Query 028910
Match_columns 202
No_of_seqs 136 out of 248
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 06:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_X RPL18A, 60S ribosomal p 100.0 5.6E-99 2E-103 635.2 17.1 184 12-201 6-189 (189)
2 3iz5_S 60S ribosomal protein L 100.0 5.7E-99 2E-103 630.6 11.1 176 27-202 3-178 (178)
3 3u5e_S L18A, 60S ribosomal pro 100.0 2.7E-98 9E-103 624.0 14.2 170 28-202 2-172 (172)
4 3j21_l 50S ribosomal protein L 100.0 1E-36 3.5E-41 225.2 7.4 74 97-170 2-75 (77)
5 4adx_G RPLX; ribosome, protein 100.0 2.2E-34 7.4E-39 213.2 6.7 74 97-170 4-77 (78)
6 4adx_G RPLX; ribosome, protein 58.9 15 0.00052 26.5 4.7 62 28-92 3-64 (78)
7 3j21_l 50S ribosomal protein L 43.3 30 0.001 24.9 4.1 62 29-93 2-63 (77)
8 3ijm_A Uncharacterized restric 35.5 18 0.00061 29.4 2.1 19 96-114 113-133 (151)
9 2vy4_A U11/U12 small nuclear r 26.3 39 0.0013 20.9 2.1 27 53-79 7-33 (37)
10 2kfd_A PRE-mRNA-processing pro 25.3 30 0.001 24.8 1.6 21 116-136 45-66 (69)
11 2nr7_A Secretion activator pro 25.1 22 0.00075 29.6 1.0 43 93-135 26-74 (195)
12 2j8a_A Histone-lysine N-methyl 24.8 47 0.0016 26.4 2.8 36 78-114 27-62 (136)
13 3voq_A Target of rapamycin com 20.3 94 0.0032 24.4 3.7 46 83-131 68-113 (125)
No 1
>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X
Probab=100.00 E-value=5.6e-99 Score=635.23 Aligned_cols=184 Identities=48% Similarity=0.801 Sum_probs=178.4
Q ss_pred CCCCCCcccccccccccceeEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEec
Q 028910 12 SFTCSEPALLGGKMVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91 (202)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~lkeY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~ 91 (202)
+-+..||||+ +.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|+||+
T Consensus 6 ~~~~~~~~~~------~~l~eY~VvGr~lPt~k~p~P~lyrM~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~ 79 (189)
T 4a18_X 6 AQEPKDDTLQ------MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNEIY 79 (189)
T ss_dssp TTSCSSGGGS------CCCEEEEEEEEETTCCTTSCCCEEEEEEEESSHHHHHHHHHHHHHHHSSCCSTTEEEEEEEEEC
T ss_pred ccCCCCcccc------cceEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHHhhhhccceEEEEEEEc
Confidence 3456788887 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccC
Q 028910 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNS 171 (202)
Q Consensus 92 Ek~p~~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~~ 171 (202)
||+|++|||||||||||||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+|||++
T Consensus 80 Ek~p~~VKNfGIwlrYdSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQf~~s 159 (189)
T 4a18_X 80 EKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNA 159 (189)
T ss_dssp CSCTTSCEEEEEEEEEECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHTTCCS
T ss_pred cCCCceeEEeeEEEEEcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccccccCCCCcccCCceeecCCCCC
Q 028910 172 KIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201 (202)
Q Consensus 172 kikFPl~~r~~~~~~k~~~~~F~~~rP~t~ 201 (202)
+|+||||||+++.++++++++|+++||+||
T Consensus 160 kikFPl~hrv~~~~~~~~~~~F~~~rP~t~ 189 (189)
T 4a18_X 160 ALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189 (189)
T ss_dssp CCEEECCCCCCCCSSGGGCCSSCSSCCCCC
T ss_pred CCccccceeecccccccccceeeccCCCCC
Confidence 999999999998876778899999999997
No 2
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_S 3izc_S 3izs_S
Probab=100.00 E-value=5.7e-99 Score=630.59 Aligned_cols=176 Identities=90% Similarity=1.410 Sum_probs=162.3
Q ss_pred ccceeEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeEeeEEEE
Q 028910 27 TFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLR 106 (202)
Q Consensus 27 ~~~lkeY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~Ek~p~~VKNfGIwlr 106 (202)
.|.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|+||+||+|++|||||||||
T Consensus 3 ~~~l~eY~VvGr~lPt~k~p~p~lyrm~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlr 82 (178)
T 3iz5_S 3 AFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLR 82 (178)
T ss_dssp SCSCEEEEEEECCCCCSSSCCCCCBCCCEEESSHHHHHHHHHHHHHHTTCCCSTTCCEEEEECCCSSSSSCCCCCEEEEE
T ss_pred CceeEEEEEEEecCCCCCCCCCceEEEEeecCCeEEEeehHHHHHHHHhhhhhccceEEEEEEEccCCCceeEEeeEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCCCC
Q 028910 107 YQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPT 186 (202)
Q Consensus 107 YdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~ 186 (202)
||||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+|||+++|+||||||+++.+.
T Consensus 83 YdSrsgtHNmyKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~ikQf~~skikFPl~hrv~~~~~ 162 (178)
T 3iz5_S 83 YQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPT 162 (178)
T ss_dssp EECSSSEEEEEEECCCSCHHHHHHHHHHHHHTTSCCCTTCCCEEEEECCCTTTCCSCHHHHHHHHHHSSSSSSSSSSSGG
T ss_pred EcccCCcccchhhhhhccHHHHHHHHHHHhhhhhcccccceEEEeEEEEcHHHcCCHHHHHhhcCCCccccceeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccCCceeecCCCCCC
Q 028910 187 RKLKTTYKASRPNLFM 202 (202)
Q Consensus 187 k~~~~~F~~~rP~t~~ 202 (202)
++++++|+++||+||+
T Consensus 163 ~~~~~~F~~~rP~t~~ 178 (178)
T 3iz5_S 163 RKLKTTFKASRPNLFM 178 (178)
T ss_dssp GSSCC-----------
T ss_pred ccccCeEeccCCccCC
Confidence 7888999999999985
No 3
>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S
Probab=100.00 E-value=2.7e-98 Score=623.96 Aligned_cols=170 Identities=49% Similarity=0.881 Sum_probs=166.9
Q ss_pred cceeEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeEeeEEEEE
Q 028910 28 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRY 107 (202)
Q Consensus 28 ~~lkeY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~Ek~p~~VKNfGIwlrY 107 (202)
+.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|+||+||+|++||||||||||
T Consensus 2 ~~l~eY~VvGr~lPt~k~~~p~lyrm~iFApn~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY 81 (172)
T 3u5e_S 2 AHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRY 81 (172)
T ss_dssp CSCEEEEEEECCCCBTTBCSCCCEEEEEEESSHHHHHHHHHHHHTTTSSCCGGGCCEEEEEECCCSSTTSCEEEEEEEEE
T ss_pred CccEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHhhhhcccceEEEEEEEccCCCceeEEeeEEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeee-CCCccCCccccccccCCCcCcccccccCCCC
Q 028910 108 QSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI-PAKLCKRESTKQFHNSKIKFPLVFKKVRPPT 186 (202)
Q Consensus 108 dSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI-~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~ 186 (202)
|||||||||||||||+|++|||+|||+|||||||||+++||||+|+|| +++||+||+|+||||++||||||||+++.
T Consensus 82 dSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vkQf~~skikFPl~hrv~~~-- 159 (172)
T 3u5e_S 82 DSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS-- 159 (172)
T ss_dssp ECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHHGGGSTTCEEECCSCCCCC--
T ss_pred cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhHhhhcCCCccccccccccC--
Confidence 999999999999999999999999999999999999999999999999 89999999999999999999999999975
Q ss_pred cccCCceeecCCCCCC
Q 028910 187 RKLKTTYKASRPNLFM 202 (202)
Q Consensus 187 k~~~~~F~~~rP~t~~ 202 (202)
+++|+++||+|||
T Consensus 160 ---~~~F~~~rP~t~~ 172 (172)
T 3u5e_S 160 ---TKTFSYKRPSTFY 172 (172)
T ss_dssp ---SSSCBSSCCCCCC
T ss_pred ---CCceeccCCCCCC
Confidence 4899999999997
No 4
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-36 Score=225.19 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=72.4
Q ss_pred eeeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 028910 97 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN 170 (202)
Q Consensus 97 ~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~ 170 (202)
.|||||||++|+||+|+|||||||||++++|||||||+|||||||+|+++|||++|+||+++||+||+|+||+.
T Consensus 2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~ 75 (77)
T 3j21_l 2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL 75 (77)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=100.00 E-value=2.2e-34 Score=213.18 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=72.7
Q ss_pred eeeEeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 028910 97 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHN 170 (202)
Q Consensus 97 ~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq~YsemgsRHRar~~sIqIikVeeI~~~e~rrp~vkQf~~ 170 (202)
.|||||||++|+||+|+|||||||||++++||||+||+||||||++|+++|+|++|+||+++||+||+|+||+.
T Consensus 4 ~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~ 77 (78)
T 4adx_G 4 KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ 77 (78)
T ss_pred eeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999974
No 6
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=58.85 E-value=15 Score=26.48 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=52.8
Q ss_pred cceeEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEecc
Q 028910 28 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFE 92 (202)
Q Consensus 28 ~~lkeY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~E 92 (202)
|.++-|.|.|+-.-. .. +.-|.--+=|.|+..|..+-.--|---+++|.++-.|+.+.||.+
T Consensus 3 ~~vK~f~V~g~~~~r-~~--~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~ 64 (78)
T 4adx_G 3 MKTKIFRVKGKFLMG-DK--LQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISP 64 (78)
T ss_pred ceeEEEEEEEEEEcC-CC--eEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCH
Confidence 578999999987533 22 455677788999999999999999999999999999999999943
No 7
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.30 E-value=30 Score=24.86 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=50.4
Q ss_pred ceeEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccC
Q 028910 29 RFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEK 93 (202)
Q Consensus 29 ~lkeY~VvGr~lPtek~p~P~lyrM~IFApN~VvAKSrFWyfl~~l~K~Kkt~GeIv~~~eI~Ek 93 (202)
.+|.|.|.|+-.-. .. +.=|.=-+=|.|+..|..+-.--|---+++|.++-.|+.+.+|.+.
T Consensus 2 ~vK~f~V~g~y~~r-~~--~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~ 63 (77)
T 3j21_l 2 KVKVFRVHGYFEKN-GR--KFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPE 63 (77)
T ss_dssp CCCEEEEEEEEEET-TE--EEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTT
T ss_pred ceEEEEEEEEEEcC-CC--eEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHH
Confidence 57899999986533 22 2334455569999999999999999999999999999999999644
No 8
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=35.48 E-value=18 Score=29.38 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=16.5
Q ss_pred ceeeEe--eEEEEEecCCcce
Q 028910 96 TKIKNY--GIWLRYQSRTGYH 114 (202)
Q Consensus 96 ~~VKNf--GIwlrYdSrsgth 114 (202)
+.|=|| |.|+||+...|..
T Consensus 113 GFVynYkt~~W~rYr~g~gg~ 133 (151)
T 3ijm_A 113 GFVFNYKTQQWLRYRLGDGGV 133 (151)
T ss_dssp EEEEETTTTEEEEEETTSTTC
T ss_pred eeeEeeccCceeEEEcCCCce
Confidence 678888 9999999998875
No 9
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=26.26 E-value=39 Score=20.93 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=21.4
Q ss_pred EEeeecCceeeehhhHHHHHHHhhhhc
Q 028910 53 MKLWATNEVRAKSKFWYFLRKLKKVKK 79 (202)
Q Consensus 53 M~IFApN~VvAKSrFWyfl~~l~K~Kk 79 (202)
..=|.+||.|..+||++.|.+=++-+.
T Consensus 7 ~CPyd~~H~i~~~~l~~Hl~kC~~r~~ 33 (37)
T 2vy4_A 7 ICPYDSNHHMPKSSLAKHMASCRLRKM 33 (37)
T ss_dssp ECTTTSSCEECGGGHHHHHHHHHHHHC
T ss_pred ECCCCCCeEeCHHHHHHHHHHHhhhhh
Confidence 344789999999999999987665443
No 10
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=25.30 E-value=30 Score=24.81 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=17.3
Q ss_pred cceeeccC-ChhhHHHHHHHHh
Q 028910 116 MYKEYRDT-TLNGAVEQMYTEM 136 (202)
Q Consensus 116 myKEyRdl-t~~gAVeq~Ysem 136 (202)
-|.||+|+ .+.....|+|+|+
T Consensus 45 ~~~Ey~~l~~E~~v~~qif~~F 66 (69)
T 2kfd_A 45 ESLEYKALGDEDNIRRQIFEDF 66 (69)
T ss_dssp TSTTSGGGTTSHHHHHHHHHHH
T ss_pred cCHHHHHhhccHHHHHHHHHhc
Confidence 46799999 5558899999986
No 11
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=25.09 E-value=22 Score=29.62 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=30.4
Q ss_pred CCCceeeEeeEEEEEecCCcc------eecceeeccCChhhHHHHHHHH
Q 028910 93 KNPTKIKNYGIWLRYQSRTGY------HNMYKEYRDTTLNGAVEQMYTE 135 (202)
Q Consensus 93 k~p~~VKNfGIwlrYdSrsgt------hNmyKEyRdlt~~gAVeq~Yse 135 (202)
..|+-.=||||-.+.-++.|. +.-....|+||.++|++.+|..
T Consensus 26 ~D~GG~T~~GIT~~t~~~~g~~~~~~g~~~~~dv~~Lt~~~a~~~Iy~~ 74 (195)
T 2nr7_A 26 ADAGGATNKGVTIATWKRVGYDKDGDGDIDVEDLKLLTDDDVLNRVLKP 74 (195)
T ss_dssp GGGTCCEEECCCCCCTTTSSCBCTTSTTCCCSCGGGSCHHHHHHHTHHH
T ss_pred CCCCCCcchhhhHHHHHhcCCccccCCCCCHHHHHhCCHHHHHHHHHHH
Confidence 345667899999886555553 2223458999999999977753
No 12
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=24.82 E-value=47 Score=26.42 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=25.8
Q ss_pred hccCcceEEEEEeccCCCceeeEeeEEEEEecCCcce
Q 028910 78 KKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYH 114 (202)
Q Consensus 78 Kkt~GeIv~~~eI~Ek~p~~VKNfGIwlrYdSrsgth 114 (202)
=.+-|||.+|+-+.++....-++|| +.+|.+++|..
T Consensus 27 Fs~fGeV~~~~li~Dp~Tg~slGfg-fVef~d~~g~~ 62 (136)
T 2j8a_A 27 FKKYGEISHFEAFNDPNSALPLHVY-LIKYASSDGKI 62 (136)
T ss_dssp HHTTSCCSEEEEEECTTTCCEEEEE-EEECC------
T ss_pred HHhcCCeEEEEEEecCCCCceeeEE-EEEECCCCCCc
Confidence 3477999999999999999999998 46677655543
No 13
>3voq_A Target of rapamycin complex 2 subunit mapkap1; PH domain, membrane protein; 2.00A {Homo sapiens}
Probab=20.34 E-value=94 Score=24.39 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=27.8
Q ss_pred ceEEEEEeccCCCceeeEeeEEEEEecCCcceecceeeccCChhhHHHH
Q 028910 83 QMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQ 131 (202)
Q Consensus 83 eIv~~~eI~Ek~p~~VKNfGIwlrYdSrsgthNmyKEyRdlt~~gAVeq 131 (202)
.|+.|+ |.|++|...++|-|. |.+.+.+.+-+=|=+..+.++.|+.
T Consensus 68 ~Vv~Ck-vs~~~p~s~~~Fklv--~~~~~~~KryDFEa~~~~A~EIV~k 113 (125)
T 3voq_A 68 LLCACD-LAEEKSPSHAIFKLT--YLSNHDYKHLYFESDAATVNEIVLK 113 (125)
T ss_dssp GEEEEE-EEEECSSSCEEEEEE--EEETTEEEEEEEEECHHHHHHHHHH
T ss_pred ceEEEE-eeccCCCCcceEEEE--EeCCCCcccceeEcCcccHHHHHHH
Confidence 589999 888899788888754 5554444444434333333344443
Done!