Query 028911
Match_columns 202
No_of_seqs 185 out of 1405
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:29:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 2E-40 4.4E-45 263.8 2.8 162 1-162 1-189 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 5.4E-36 1.2E-40 203.8 3.1 75 2-76 1-75 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.3E-32 2.7E-37 190.0 3.3 78 2-79 1-79 (83)
4 smart00432 MADS MADS domain. 100.0 6.2E-32 1.3E-36 173.7 3.6 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 3.9E-31 8.5E-36 170.2 3.3 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1.2E-29 2.7E-34 158.0 -1.6 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 3.4E-20 7.3E-25 132.6 12.0 90 84-173 11-100 (100)
8 KOG0015 Regulator of arginine 99.8 1.8E-21 3.9E-26 159.0 2.4 66 2-67 63-128 (338)
9 COG5068 ARG80 Regulator of arg 99.5 2.6E-15 5.7E-20 128.1 2.9 68 1-68 81-148 (412)
10 PF06005 DUF904: Protein of un 95.2 0.21 4.5E-06 33.3 7.7 48 119-171 1-48 (72)
11 PF10584 Proteasome_A_N: Prote 90.8 0.057 1.2E-06 27.8 -0.3 14 43-56 3-16 (23)
12 PRK04098 sec-independent trans 88.7 0.18 3.8E-06 38.8 0.7 82 42-133 14-95 (158)
13 PRK15422 septal ring assembly 88.1 4.7 0.0001 27.2 7.1 42 119-165 1-42 (79)
14 PF01166 TSC22: TSC-22/dip/bun 87.5 1.7 3.6E-05 27.6 4.4 30 144-173 17-46 (59)
15 cd07429 Cby_like Chibby, a nuc 86.8 1.1 2.5E-05 32.2 3.9 25 149-173 73-97 (108)
16 PF06698 DUF1192: Protein of u 86.5 1.9 4E-05 27.6 4.3 33 110-142 12-44 (59)
17 COG3074 Uncharacterized protei 85.6 8.1 0.00018 25.5 7.0 42 119-165 1-42 (79)
18 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.2 13 0.00028 27.4 10.7 30 144-173 101-130 (132)
19 KOG4797 Transcriptional regula 84.2 7.5 0.00016 27.9 6.9 26 144-169 70-95 (123)
20 PF08317 Spc7: Spc7 kinetochor 81.4 7.3 0.00016 33.4 7.3 59 114-172 201-261 (325)
21 PRK10884 SH3 domain-containing 78.2 34 0.00073 27.5 10.9 77 91-172 92-170 (206)
22 KOG4797 Transcriptional regula 77.9 22 0.00048 25.5 7.5 46 129-174 48-93 (123)
23 smart00787 Spc7 Spc7 kinetocho 77.7 11 0.00023 32.4 7.1 59 114-172 196-256 (312)
24 PF06156 DUF972: Protein of un 75.9 24 0.00051 25.3 7.4 49 121-174 7-55 (107)
25 PF07106 TBPIP: Tat binding pr 75.4 21 0.00045 27.4 7.7 55 87-145 81-135 (169)
26 PF10504 DUF2452: Protein of u 75.3 20 0.00043 27.6 7.2 44 120-163 28-74 (159)
27 PRK13169 DNA replication intia 71.6 35 0.00076 24.6 7.6 49 121-174 7-55 (110)
28 PF10226 DUF2216: Uncharacteri 71.5 30 0.00065 27.4 7.5 34 141-174 48-81 (195)
29 smart00338 BRLZ basic region l 71.2 21 0.00045 22.8 5.7 35 135-173 17-51 (65)
30 PF00170 bZIP_1: bZIP transcri 69.3 26 0.00057 22.2 5.9 34 135-172 17-50 (64)
31 TIGR02449 conserved hypothetic 68.5 30 0.00065 22.5 6.6 50 123-172 1-52 (65)
32 TIGR02338 gimC_beta prefoldin, 68.3 40 0.00087 24.0 8.8 45 127-172 61-105 (110)
33 cd00187 TOP4c DNA Topoisomeras 67.9 42 0.00091 30.3 8.8 60 7-73 257-328 (445)
34 KOG1962 B-cell receptor-associ 67.2 42 0.0009 27.2 7.8 56 119-174 155-212 (216)
35 PRK09343 prefoldin subunit bet 66.2 48 0.001 24.1 8.5 42 130-172 68-109 (121)
36 PF07716 bZIP_2: Basic region 65.5 29 0.00063 21.3 5.9 34 135-172 16-49 (54)
37 PRK10884 SH3 domain-containing 63.9 53 0.0011 26.4 7.9 11 96-106 90-100 (206)
38 PHA03162 hypothetical protein; 63.0 61 0.0013 24.1 8.3 59 84-142 12-74 (135)
39 PF06156 DUF972: Protein of un 62.6 50 0.0011 23.6 6.8 40 132-172 7-46 (107)
40 PF05812 Herpes_BLRF2: Herpesv 62.4 59 0.0013 23.8 7.8 57 86-142 4-64 (118)
41 COG0139 HisI Phosphoribosyl-AM 62.3 3.9 8.4E-05 29.4 1.0 39 16-54 49-96 (111)
42 PHA03155 hypothetical protein; 61.2 60 0.0013 23.5 8.1 58 85-142 8-65 (115)
43 PF04849 HAP1_N: HAP1 N-termin 60.4 44 0.00096 28.6 7.1 52 123-174 214-267 (306)
44 PF14645 Chibby: Chibby family 59.3 16 0.00034 26.6 3.7 24 149-172 72-95 (116)
45 PF14662 CCDC155: Coiled-coil 59.1 90 0.0019 24.8 10.9 18 151-168 98-115 (193)
46 PF09151 DUF1936: Domain of un 59.0 7.8 0.00017 21.3 1.6 27 34-60 2-30 (36)
47 TIGR02231 conserved hypothetic 58.1 1.4E+02 0.0029 27.3 10.5 50 117-167 122-171 (525)
48 COG4467 Regulator of replicati 57.3 70 0.0015 23.0 7.3 48 121-173 7-54 (114)
49 KOG0250 DNA repair protein RAD 56.3 1.9E+02 0.0042 29.0 11.4 24 84-107 660-683 (1074)
50 KOG4252 GTP-binding protein [S 55.3 75 0.0016 25.3 7.0 29 39-73 91-119 (246)
51 TIGR01478 STEVOR variant surfa 55.0 18 0.0004 30.5 3.9 44 7-71 25-69 (295)
52 PF14009 DUF4228: Domain of un 54.2 9.5 0.00021 29.0 2.0 32 40-72 14-46 (181)
53 COG2433 Uncharacterized conser 54.0 2E+02 0.0043 27.2 11.3 49 122-170 450-503 (652)
54 TIGR03752 conj_TIGR03752 integ 53.2 1.8E+02 0.0039 26.5 10.5 72 88-172 69-140 (472)
55 PF09278 MerR-DNA-bind: MerR, 52.9 55 0.0012 20.4 5.3 49 118-167 14-62 (65)
56 PF15254 CCDC14: Coiled-coil d 52.8 2.3E+02 0.0049 27.6 10.9 87 87-174 389-481 (861)
57 cd01109 HTH_YyaN Helix-Turn-He 52.3 67 0.0015 22.7 6.1 53 118-171 57-109 (113)
58 PF09941 DUF2173: Uncharacteri 52.0 11 0.00024 27.1 1.9 28 32-60 3-30 (108)
59 PF09744 Jnk-SapK_ap_N: JNK_SA 51.8 1.1E+02 0.0023 23.5 8.2 29 145-173 86-114 (158)
60 PF01502 PRA-CH: Phosphoribosy 50.3 5.7 0.00012 26.7 0.2 37 17-53 18-63 (75)
61 PRK13169 DNA replication intia 49.5 97 0.0021 22.3 6.7 40 132-172 7-46 (110)
62 PF06005 DUF904: Protein of un 49.5 71 0.0015 21.1 5.3 26 144-169 14-39 (72)
63 PF11629 Mst1_SARAH: C termina 49.4 45 0.00098 20.4 3.9 19 115-133 4-22 (49)
64 PRK13729 conjugal transfer pil 48.3 1.1E+02 0.0023 28.0 7.8 30 144-173 93-122 (475)
65 PRK11637 AmiB activator; Provi 47.9 2E+02 0.0043 25.5 11.0 79 85-172 47-127 (428)
66 PF03980 Nnf1: Nnf1 ; InterPr 46.6 64 0.0014 22.7 5.2 47 115-174 60-106 (109)
67 PRK00888 ftsB cell division pr 46.4 62 0.0014 23.0 5.1 19 153-171 39-57 (105)
68 KOG4005 Transcription factor X 45.9 1.4E+02 0.003 24.8 7.4 30 143-172 106-135 (292)
69 KOG0183 20S proteasome, regula 45.8 11 0.00024 30.5 1.2 19 41-59 4-24 (249)
70 cd01107 HTH_BmrR Helix-Turn-He 45.1 1.1E+02 0.0023 21.6 6.1 49 117-171 57-105 (108)
71 PF14915 CCDC144C: CCDC144C pr 44.9 2E+02 0.0043 24.6 9.5 79 90-174 4-82 (305)
72 cd04769 HTH_MerR2 Helix-Turn-H 44.9 68 0.0015 22.9 5.2 53 118-170 56-108 (116)
73 PHA02592 52 DNA topisomerase I 44.7 2.4E+02 0.0052 25.5 11.0 29 42-72 298-326 (439)
74 PF13870 DUF4201: Domain of un 42.5 1.6E+02 0.0034 22.7 11.6 84 87-173 8-102 (177)
75 KOG0184 20S proteasome, regula 42.2 14 0.0003 30.1 1.2 24 36-59 3-28 (254)
76 PF04977 DivIC: Septum formati 42.2 59 0.0013 21.1 4.2 30 145-174 21-50 (80)
77 KOG4643 Uncharacterized coiled 42.0 81 0.0018 31.4 6.4 44 131-174 283-327 (1195)
78 COG4917 EutP Ethanolamine util 40.8 18 0.00039 27.1 1.6 25 35-59 59-83 (148)
79 PF05529 Bap31: B-cell recepto 40.7 1.7E+02 0.0038 22.7 7.6 32 142-173 155-186 (192)
80 PF09789 DUF2353: Uncharacteri 40.4 2.4E+02 0.0053 24.3 10.6 73 20-108 34-109 (319)
81 PF05325 DUF730: Protein of un 40.3 59 0.0013 22.9 4.0 25 35-60 19-48 (122)
82 PF11365 DUF3166: Protein of u 40.3 75 0.0016 22.4 4.5 30 144-173 11-40 (96)
83 PF06937 EURL: EURL protein; 40.3 1.3E+02 0.0029 25.2 6.7 38 109-146 209-246 (285)
84 PRK13824 replication initiatio 39.9 76 0.0017 28.2 5.6 95 33-141 102-212 (404)
85 TIGR01950 SoxR redox-sensitive 39.3 82 0.0018 23.6 5.0 55 118-172 57-111 (142)
86 KOG0971 Microtubule-associated 39.2 4.1E+02 0.0089 26.6 11.7 87 86-172 326-427 (1243)
87 KOG0804 Cytoplasmic Zn-finger 38.7 3E+02 0.0066 25.0 10.2 31 138-168 379-409 (493)
88 PF04849 HAP1_N: HAP1 N-termin 38.4 45 0.00097 28.5 3.8 25 149-173 161-185 (306)
89 PF10491 Nrf1_DNA-bind: NLS-bi 38.2 22 0.00047 28.6 1.7 47 26-72 35-88 (214)
90 cd01282 HTH_MerR-like_sg3 Heli 37.9 1.3E+02 0.0027 21.4 5.6 53 118-171 56-111 (112)
91 PLN03229 acetyl-coenzyme A car 37.6 1.7E+02 0.0037 28.3 7.7 91 42-140 49-144 (762)
92 TIGR00606 rad50 rad50. This fa 37.6 4.8E+02 0.01 27.0 11.5 55 118-172 821-881 (1311)
93 PF02183 HALZ: Homeobox associ 37.3 92 0.002 18.6 5.2 33 141-173 5-37 (45)
94 KOG3684 Ca2+-activated K+ chan 36.3 3.4E+02 0.0073 24.8 10.1 68 101-172 405-472 (489)
95 COG1382 GimC Prefoldin, chaper 35.7 1.8E+02 0.0038 21.3 6.4 41 132-173 69-109 (119)
96 PF05812 Herpes_BLRF2: Herpesv 35.5 66 0.0014 23.5 3.8 27 149-175 4-30 (118)
97 PF10623 PilI: Plasmid conjuga 35.5 31 0.00068 23.3 1.9 30 42-71 8-40 (83)
98 PF07676 PD40: WD40-like Beta 35.4 27 0.00058 19.4 1.4 19 42-60 10-28 (39)
99 cd04787 HTH_HMRTR_unk Helix-Tu 35.3 1.5E+02 0.0031 21.7 5.8 54 118-172 57-110 (133)
100 PF10211 Ax_dynein_light: Axon 34.7 2.3E+02 0.0049 22.3 10.2 22 151-172 166-187 (189)
101 smart00338 BRLZ basic region l 34.7 1.2E+02 0.0026 19.1 5.3 28 144-171 36-63 (65)
102 PRK10803 tol-pal system protei 34.3 13 0.00028 30.9 -0.1 21 85-105 61-81 (263)
103 TIGR02047 CadR-PbrR Cd(II)/Pb( 34.3 1.5E+02 0.0032 21.5 5.7 54 118-172 57-110 (127)
104 PF07106 TBPIP: Tat binding pr 34.3 2.1E+02 0.0045 21.8 8.8 54 88-142 112-165 (169)
105 PHA03155 hypothetical protein; 33.8 70 0.0015 23.2 3.6 26 150-175 10-35 (115)
106 cd04770 HTH_HMRTR Helix-Turn-H 33.5 1.6E+02 0.0036 20.9 5.8 53 118-171 57-109 (123)
107 cd04776 HTH_GnyR Helix-Turn-He 33.3 1.8E+02 0.004 20.8 6.3 52 118-170 55-109 (118)
108 PHA03162 hypothetical protein; 33.2 70 0.0015 23.8 3.6 26 150-175 15-40 (135)
109 PRK15002 redox-sensitivie tran 33.0 1.4E+02 0.003 22.7 5.4 55 118-172 67-121 (154)
110 PRK09514 zntR zinc-responsive 32.5 1.5E+02 0.0032 22.0 5.4 55 118-172 58-112 (140)
111 cd01108 HTH_CueR Helix-Turn-He 32.4 1.8E+02 0.0038 21.1 5.8 54 118-172 57-110 (127)
112 PHA01750 hypothetical protein 32.0 1.5E+02 0.0032 19.4 7.2 25 147-171 48-72 (75)
113 cd02980 TRX_Fd_family Thioredo 31.8 31 0.00068 22.2 1.5 30 39-69 47-77 (77)
114 KOG0930 Guanine nucleotide exc 31.8 1.2E+02 0.0026 25.8 5.2 44 115-167 7-50 (395)
115 PF13758 Prefoldin_3: Prefoldi 31.7 1.9E+02 0.0041 20.5 5.5 16 89-104 9-24 (99)
116 COG4831 Roadblock/LC7 domain [ 31.6 33 0.00072 24.1 1.6 30 30-60 3-32 (109)
117 TIGR02209 ftsL_broad cell divi 31.5 1.5E+02 0.0032 19.6 4.9 32 144-175 27-58 (85)
118 TIGR02051 MerR Hg(II)-responsi 31.2 1.7E+02 0.0038 21.0 5.6 52 118-172 56-107 (124)
119 PF10224 DUF2205: Predicted co 31.2 1.7E+02 0.0037 19.8 6.8 26 149-174 38-63 (80)
120 PRK10227 DNA-binding transcrip 31.0 1.7E+02 0.0037 21.6 5.5 54 118-172 57-110 (135)
121 KOG0963 Transcription factor/C 30.8 4.3E+02 0.0093 25.0 9.0 82 93-174 122-208 (629)
122 smart00340 HALZ homeobox assoc 30.8 96 0.0021 18.4 3.2 26 150-175 7-32 (44)
123 PF09789 DUF2353: Uncharacteri 30.4 3.6E+02 0.0078 23.3 10.1 46 129-175 68-113 (319)
124 cd04785 HTH_CadR-PbrR-like Hel 30.3 1.8E+02 0.004 20.9 5.6 54 118-172 57-110 (126)
125 cd01110 HTH_SoxR Helix-Turn-He 29.6 1.9E+02 0.004 21.5 5.6 55 118-172 57-111 (139)
126 TIGR01005 eps_transp_fam exopo 29.6 5.1E+02 0.011 24.8 10.4 48 87-134 196-249 (754)
127 PF01920 Prefoldin_2: Prefoldi 29.5 1.9E+02 0.004 19.7 8.0 26 147-172 75-100 (106)
128 KOG0709 CREB/ATF family transc 29.4 53 0.0011 29.7 2.9 55 118-172 233-310 (472)
129 TIGR03017 EpsF chain length de 29.1 4E+02 0.0087 23.4 9.5 112 62-175 150-281 (444)
130 PF08702 Fib_alpha: Fibrinogen 29.0 2.5E+02 0.0055 21.1 7.1 25 49-73 8-34 (146)
131 PLN02372 violaxanthin de-epoxi 29.0 4.3E+02 0.0093 23.8 10.8 28 121-148 378-405 (455)
132 PF14282 FlxA: FlxA-like prote 28.8 2.1E+02 0.0046 20.2 9.0 60 92-168 19-78 (106)
133 PHA02109 hypothetical protein 28.7 1.8E+02 0.004 22.8 5.4 43 109-163 178-222 (233)
134 TIGR02043 ZntR Zn(II)-responsi 28.6 1.7E+02 0.0037 21.3 5.2 55 118-172 58-112 (131)
135 PF12018 DUF3508: Domain of un 28.4 28 0.00061 29.2 1.0 32 19-60 210-241 (281)
136 KOG4637 Adaptor for phosphoino 28.3 32 0.0007 30.2 1.3 41 33-73 367-412 (464)
137 KOG0241 Kinesin-like protein [ 28.2 6E+02 0.013 25.9 9.6 65 87-174 366-430 (1714)
138 PLN03230 acetyl-coenzyme A car 27.8 3.3E+02 0.0073 24.5 7.5 75 53-139 38-122 (431)
139 cd04783 HTH_MerR1 Helix-Turn-H 27.6 2.2E+02 0.0047 20.5 5.6 52 118-172 57-108 (126)
140 PF07558 Shugoshin_N: Shugoshi 27.3 78 0.0017 18.9 2.6 31 141-171 14-44 (46)
141 TIGR03007 pepcterm_ChnLen poly 27.1 4.6E+02 0.01 23.5 10.2 49 62-112 140-188 (498)
142 KOG4603 TBP-1 interacting prot 27.0 3.1E+02 0.0068 21.5 8.7 15 39-53 48-62 (201)
143 TIGR03545 conserved hypothetic 26.9 5.3E+02 0.011 24.1 9.2 50 89-140 179-230 (555)
144 TIGR01916 F420_cofE F420-0:gam 26.2 52 0.0011 27.2 2.1 28 33-60 133-160 (243)
145 PF04880 NUDE_C: NUDE protein, 26.2 1.6E+02 0.0035 22.8 4.8 14 124-137 2-15 (166)
146 PF12537 DUF3735: Protein of u 25.8 1.4E+02 0.003 19.5 3.8 25 121-145 47-71 (72)
147 COG0216 PrfA Protein chain rel 25.8 4.5E+02 0.0099 23.0 8.0 91 61-168 8-103 (363)
148 TIGR02044 CueR Cu(I)-responsiv 25.7 2.5E+02 0.0053 20.3 5.6 54 118-172 57-110 (127)
149 cd03064 TRX_Fd_NuoE TRX-like [ 25.5 40 0.00087 22.2 1.2 28 39-69 52-80 (80)
150 PF07888 CALCOCO1: Calcium bin 25.3 5.6E+02 0.012 23.9 10.8 8 53-60 106-113 (546)
151 COG5000 NtrY Signal transducti 25.0 41 0.00088 31.7 1.4 22 36-57 374-395 (712)
152 PF10186 Atg14: UV radiation r 24.9 3.9E+02 0.0084 21.8 10.4 12 53-64 9-20 (302)
153 COG5068 ARG80 Regulator of arg 24.8 52 0.0011 29.2 2.0 59 8-72 18-77 (412)
154 TIGR02894 DNA_bind_RsfA transc 24.6 3.3E+02 0.0072 21.0 11.5 57 116-172 77-135 (161)
155 PF04999 FtsL: Cell division p 24.6 2.2E+02 0.0047 19.4 4.9 32 143-174 37-68 (97)
156 PF04945 YHS: YHS domain; Int 24.5 30 0.00065 20.5 0.4 22 39-60 6-30 (47)
157 PF04111 APG6: Autophagy prote 24.4 4.5E+02 0.0097 22.4 10.2 16 89-104 47-62 (314)
158 KOG0946 ER-Golgi vesicle-tethe 24.4 7E+02 0.015 24.7 10.1 79 89-172 615-695 (970)
159 PF08432 Vfa1: AAA-ATPase Vps4 24.3 1.3E+02 0.0028 23.5 4.0 22 87-108 64-85 (182)
160 TIGR01069 mutS2 MutS2 family p 24.1 6.8E+02 0.015 24.4 11.4 30 123-152 540-569 (771)
161 KOG0182 20S proteasome, regula 23.9 45 0.00097 27.0 1.3 18 39-56 7-24 (246)
162 PRK13923 putative spore coat p 23.9 2.5E+02 0.0053 21.9 5.4 9 116-124 100-108 (170)
163 PF14662 CCDC155: Coiled-coil 23.8 3.8E+02 0.0082 21.4 10.0 16 90-105 20-35 (193)
164 PF04697 Pinin_SDK_N: pinin/SD 23.7 1.4E+02 0.003 22.2 3.7 37 87-123 5-41 (134)
165 cd04790 HTH_Cfa-like_unk Helix 23.5 3E+02 0.0065 21.1 5.9 47 118-171 58-104 (172)
166 KOG4311 Histidinol dehydrogena 23.4 1E+02 0.0023 26.0 3.4 57 15-71 180-257 (359)
167 PF05991 NYN_YacP: YacP-like N 23.4 3.4E+02 0.0074 20.7 6.9 55 20-75 23-92 (166)
168 PF06785 UPF0242: Uncharacteri 23.3 5.1E+02 0.011 22.7 8.3 43 129-172 130-172 (401)
169 PF09388 SpoOE-like: Spo0E lik 23.2 1.7E+02 0.0036 17.1 4.0 21 118-138 21-41 (45)
170 PF09798 LCD1: DNA damage chec 23.1 5.1E+02 0.011 24.8 8.2 50 123-172 5-57 (654)
171 PF12165 DUF3594: Domain of un 23.0 42 0.00091 24.9 0.9 33 20-52 9-47 (137)
172 PF02151 UVR: UvrB/uvrC motif; 23.0 1.5E+02 0.0032 16.5 4.0 33 123-155 3-35 (36)
173 PF04859 DUF641: Plant protein 22.9 3.2E+02 0.007 20.3 9.5 52 119-171 80-131 (131)
174 PRK09413 IS2 repressor TnpA; R 22.8 2.4E+02 0.0052 20.2 5.0 27 146-172 76-102 (121)
175 PF06020 Roughex: Drosophila r 22.6 40 0.00087 28.6 0.9 16 36-51 183-198 (334)
176 PRK01470 tatA twin arginine tr 22.6 11 0.00023 23.4 -1.9 31 43-75 14-44 (51)
177 cd01106 HTH_TipAL-Mta Helix-Tu 22.5 2.7E+02 0.0058 19.2 6.0 15 118-132 57-71 (103)
178 PF14775 NYD-SP28_assoc: Sperm 22.5 2.1E+02 0.0047 18.0 5.0 43 121-172 15-57 (60)
179 PRK13752 putative transcriptio 22.4 2.9E+02 0.0063 20.6 5.5 52 118-172 64-115 (144)
180 PF04873 EIN3: Ethylene insens 22.3 29 0.00063 30.3 0.0 44 20-63 48-92 (354)
181 cd08888 SRPBCC_PITPNA-B_like L 22.3 1.1E+02 0.0024 25.5 3.4 27 113-139 231-257 (258)
182 PLN03128 DNA topoisomerase 2; 22.1 4.5E+02 0.0098 26.9 8.1 27 44-72 961-987 (1135)
183 KOG4673 Transcription factor T 22.1 7.4E+02 0.016 24.1 9.8 36 140-175 604-639 (961)
184 PF13252 DUF4043: Protein of u 22.1 45 0.00098 28.9 1.1 28 31-58 270-299 (341)
185 KOG0837 Transcriptional activa 22.0 4E+02 0.0087 22.4 6.5 56 114-171 192-250 (279)
186 PF07407 Seadorna_VP6: Seadorn 22.0 2.4E+02 0.0052 24.6 5.3 46 115-174 25-70 (420)
187 KOG3119 Basic region leucine z 21.8 2.2E+02 0.0047 23.8 5.1 23 151-173 218-240 (269)
188 PRK11519 tyrosine kinase; Prov 21.6 3.5E+02 0.0077 25.9 7.1 49 62-112 246-294 (719)
189 PF10211 Ax_dynein_light: Axon 21.5 4E+02 0.0088 20.9 11.1 18 143-160 165-182 (189)
190 PF04566 RNA_pol_Rpb2_4: RNA p 21.4 33 0.00071 22.0 0.1 31 22-54 23-54 (63)
191 cd03750 proteasome_alpha_type_ 21.1 37 0.0008 27.3 0.4 16 44-59 4-21 (227)
192 PRK09841 cryptic autophosphory 21.0 4.6E+02 0.0099 25.1 7.7 26 86-111 268-293 (726)
193 KOG4643 Uncharacterized coiled 20.9 7.7E+02 0.017 25.0 9.0 30 145-174 312-341 (1195)
194 PRK11637 AmiB activator; Provi 20.9 5.9E+02 0.013 22.5 11.2 20 146-165 108-127 (428)
195 cd04775 HTH_Cfa-like Helix-Tur 20.9 3E+02 0.0064 19.0 5.6 45 118-171 57-101 (102)
196 PF13540 RCC1_2: Regulator of 20.7 44 0.00096 17.7 0.5 24 36-60 3-26 (30)
197 PRK15422 septal ring assembly 20.6 2.8E+02 0.0061 18.7 5.1 29 144-172 14-42 (79)
198 cd04779 HTH_MerR-like_sg4 Heli 20.6 3.6E+02 0.0078 19.9 7.3 49 118-167 56-107 (134)
199 smart00782 PhnA_Zn_Ribbon PhnA 20.5 52 0.0011 19.9 0.8 22 28-49 2-23 (47)
200 PTZ00370 STEVOR; Provisional 20.5 1.1E+02 0.0023 26.1 2.9 42 8-71 26-68 (296)
201 PRK13293 F420-0--gamma-glutamy 20.4 77 0.0017 26.2 2.1 27 34-60 135-161 (245)
202 PF07888 CALCOCO1: Calcium bin 20.3 7.1E+02 0.015 23.2 12.2 22 150-171 215-236 (546)
203 cd04786 HTH_MerR-like_sg7 Heli 20.2 3E+02 0.0066 20.1 5.1 29 144-172 81-109 (131)
204 PF09726 Macoilin: Transmembra 20.1 4.3E+02 0.0093 25.4 7.2 82 90-171 458-561 (697)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=2e-40 Score=263.78 Aligned_cols=162 Identities=47% Similarity=0.656 Sum_probs=132.1
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccc--cchhhhhhhcccccccc
Q 028911 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS--INKTIERYQKKTKDIGI 78 (202)
Q Consensus 1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s--~~~il~RY~~~~~~~~~ 78 (202)
|||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|++++ |..|++||...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999986 99999999997766544
Q ss_pred cccccccc-h-------------------HHHHHHHhhhHhHHHHHHH---HHhhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 028911 79 NSKIVEDH-S-------------------QHAKEETSNMMTKLEFLEV---AKRKLLGDGLEPCTI-DELQQLENQLERS 134 (202)
Q Consensus 79 ~~~~~~~~-~-------------------~~l~~e~~kL~~~~e~le~---~~r~l~Ge~L~~Ls~-~EL~~Le~~Le~~ 134 (202)
........ . ..+......+....+.++. ..+++.|+++.+++. .+|..++.+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 33221110 0 1133445555566666554 378899999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 028911 135 LSRIRARKNQLFREQIE-KLKEKEKILIE 162 (202)
Q Consensus 135 L~~Ir~RK~~ll~~~i~-~l~~k~~~l~~ 162 (202)
+..++..+...+.+++. .++.++..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEA 189 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhccc
Confidence 99999999988888776 55555544443
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=5.4e-36 Score=203.83 Aligned_cols=75 Identities=76% Similarity=1.040 Sum_probs=72.7
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcccccc
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI 76 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~~~ 76 (202)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|+||++++||+||.+.++..
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~ 75 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS 75 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=1.3e-32 Score=189.96 Aligned_cols=78 Identities=51% Similarity=0.732 Sum_probs=73.0
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccc-cchhhhhhhccccccccc
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCS-INKTIERYQKKTKDIGIN 79 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s-~~~il~RY~~~~~~~~~~ 79 (202)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+++.|++++ +..++++|...+...+..
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK 79 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence 899999999999999999999999999999999999999999999999999999998875 999999999988765443
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=6.2e-32 Score=173.74 Aligned_cols=59 Identities=78% Similarity=1.100 Sum_probs=58.1
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~ 60 (202)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999886
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=3.9e-31 Score=170.16 Aligned_cols=59 Identities=80% Similarity=1.116 Sum_probs=57.8
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~ 60 (202)
||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.95 E-value=1.2e-29 Score=157.97 Aligned_cols=51 Identities=69% Similarity=1.072 Sum_probs=47.1
Q ss_pred eeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc
Q 028911 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 (202)
Q Consensus 9 k~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s 59 (202)
|+|+|++.|++||+|||.||||||+|||+||||+||+|||||+|++|.|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999987
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.84 E-value=3.4e-20 Score=132.61 Aligned_cols=90 Identities=42% Similarity=0.623 Sum_probs=86.7
Q ss_pred ccchHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEE 163 (202)
Q Consensus 84 ~~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~e 163 (202)
..+.+.|+.++.+|+.+++.|+..+|+++|++|++||++||..||.+|+.+|.+||+||++++.++|+.|++|++.|.++
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcc
Q 028911 164 NTKLREQCGM 173 (202)
Q Consensus 164 n~~L~~~~~~ 173 (202)
|..|+.++++
T Consensus 91 n~~L~~~~~e 100 (100)
T PF01486_consen 91 NNQLRQKIEE 100 (100)
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.82 E-value=1.8e-21 Score=158.96 Aligned_cols=66 Identities=42% Similarity=0.644 Sum_probs=62.1
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhh
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIE 67 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~ 67 (202)
||+||+|.+|+|+..|.|||||||.|+||||+|||||+|.+|-|+|.|.+|.+|.|+.|.++.||.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~ 128 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMIT 128 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccccccccc
Confidence 799999999999999999999999999999999999999999999999999999999986655543
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.54 E-value=2.6e-15 Score=128.13 Aligned_cols=68 Identities=40% Similarity=0.593 Sum_probs=63.6
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhh
Q 028911 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIER 68 (202)
Q Consensus 1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~R 68 (202)
|||+||.|.+|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|++|..+.|+.-
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 78999999999999999999999999999999999999999999999999999999999866655443
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.21 E-value=0.21 Score=33.30 Aligned_cols=48 Identities=35% Similarity=0.562 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
+|++.|..||..+..++..| .++..+++.|+.+-..|.++|..|....
T Consensus 1 M~~E~l~~LE~ki~~aveti-----~~Lq~e~eeLke~n~~L~~e~~~L~~en 48 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETI-----ALLQMENEELKEKNNELKEENEELKEEN 48 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 57889999999999999998 4566777888887666666665555443
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=90.83 E-value=0.057 Score=27.78 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=11.4
Q ss_pred eeeeeecCCCCccc
Q 028911 43 VALIIFSPRGKLYE 56 (202)
Q Consensus 43 valivfs~~gk~~~ 56 (202)
-.+.+|||.|++|.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 45678999999985
No 12
>PRK04098 sec-independent translocase; Provisional
Probab=88.66 E-value=0.18 Score=38.76 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=44.6
Q ss_pred ceeeeeecCCCCcccccccccchhhhhhhcccccccccccccccchHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCH
Q 028911 42 EVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTI 121 (202)
Q Consensus 42 ~valivfs~~gk~~~~~s~s~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~ 121 (202)
=||||||+| +|++.++- .+-..+..|++........- ..+-.+..++.+..+.+..++.....+| ..+++
T Consensus 14 vVaLlvfGP-~KLP~~~r-~lGk~ir~~K~~~~~~k~~l-~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~~ 83 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAMV-DIAKFFKAVKKTINDAKSTL-DKEINIEEIKEEALKYKKEFESAVESLK-------KKLKF 83 (158)
T ss_pred HHHHhhcCc-hHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccCh
Confidence 378999999 48776654 35555666655443321100 0012344556666666666555554443 22667
Q ss_pred HHHHHHHHHHHH
Q 028911 122 DELQQLENQLER 133 (202)
Q Consensus 122 ~EL~~Le~~Le~ 133 (202)
++|.++-..+..
T Consensus 84 eel~~~~~~~~~ 95 (158)
T PRK04098 84 EELDDLKITAEN 95 (158)
T ss_pred HHHHHHhhhhhh
Confidence 777766544444
No 13
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=88.11 E-value=4.7 Score=27.22 Aligned_cols=42 Identities=29% Similarity=0.529 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENT 165 (202)
Q Consensus 119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~ 165 (202)
+|++=|..||..+..++..| .++.=+|+.|+.+-..|.+++.
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999988 5677777888877655555433
No 14
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.46 E-value=1.7 Score=27.61 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
+.+.++|..|..+...|+.||..|+..+..
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 567889999999999999999999987653
No 15
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=86.84 E-value=1.1 Score=32.16 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 149 QIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 149 ~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
++..++++.+.|+|||+.|+-|++.
T Consensus 73 e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 73 EVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788889999999888763
No 16
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.46 E-value=1.9 Score=27.58 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=27.3
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028911 110 KLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (202)
Q Consensus 110 ~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK 142 (202)
+..|+||+.||++||..--..|+.-+.+++.-.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999998888888777776543
No 17
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.61 E-value=8.1 Score=25.45 Aligned_cols=42 Identities=29% Similarity=0.529 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENT 165 (202)
Q Consensus 119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~ 165 (202)
+|++=|..||..+..++..| .|+.=+|+.|+.|-..|..|-.
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHH
Confidence 46777888888888888777 4566666666666554444333
No 18
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.15 E-value=13 Score=27.45 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
..|..++..++.+...|..+|..|..+++.
T Consensus 101 ~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 101 EQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999874
No 19
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=84.24 E-value=7.5 Score=27.85 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
+.+.++|..|-.+...|++||..|+.
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777764
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.42 E-value=7.3 Score=33.42 Aligned_cols=59 Identities=31% Similarity=0.513 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 114 DGLEPCTIDELQQLENQLERSLSRIRARKNQLF--REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 114 e~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll--~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
..++.++..+|..+...|...-..|..++..+- ..+...+..+...+.++-..+...+.
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558899999999999999998888887765543 35555555555555555555555444
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.23 E-value=34 Score=27.50 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=38.0
Q ss_pred HHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 91 KEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIR--ARKNQLFREQIEKLKEKEKILIEENTKLR 168 (202)
Q Consensus 91 ~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir--~RK~~ll~~~i~~l~~k~~~l~~en~~L~ 168 (202)
...+..++.+++.++..+....++ . -....++.+.+..+-..|. ...++-+.+++..++.+...|..+|..++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~-~----~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT-W----NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444333322 0 1233333333333322232 33344556777777777777777777776
Q ss_pred HHHc
Q 028911 169 EQCG 172 (202)
Q Consensus 169 ~~~~ 172 (202)
+...
T Consensus 167 ~~~~ 170 (206)
T PRK10884 167 RTII 170 (206)
T ss_pred HHHH
Confidence 6544
No 22
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=77.94 E-value=22 Score=25.49 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 129 NQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 129 ~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
..++.++.-|+..-+--..++++.|+.+++.|.+.|..|.......
T Consensus 48 NKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lL 93 (123)
T KOG4797|consen 48 NKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLL 93 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667666677778999999999999999999998875533
No 23
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=77.67 E-value=11 Score=32.40 Aligned_cols=59 Identities=25% Similarity=0.433 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 114 DGLEPCTIDELQQLENQLERSLSRIRARKNQLF--REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 114 e~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll--~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++++.++.++|..+...|......|..++..+- .++...+..++....++-..+...+.
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999888877665542 24444444444444444444444433
No 24
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=75.89 E-value=24 Score=25.31 Aligned_cols=49 Identities=37% Similarity=0.445 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
++.+.+||.+|...+..|.+=| .++..|-..-..|.-||..|+..+...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK-----~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELK-----KQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777776666665433 333455555566777788888777644
No 25
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.42 E-value=21 Score=27.40 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=25.9
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQL 145 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~l 145 (202)
+..++.++..++.++..++..+..+. ..++.+||...-..|..-+..+.+|-..+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333 33455555555555555555555554443
No 26
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=75.31 E-value=20 Score=27.61 Aligned_cols=44 Identities=32% Similarity=0.438 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 028911 120 TIDELQQLENQLERSLSRIRAR---KNQLFREQIEKLKEKEKILIEE 163 (202)
Q Consensus 120 s~~EL~~Le~~Le~~L~~Ir~R---K~~ll~~~i~~l~~k~~~l~~e 163 (202)
+..||..|-++++.+-.-+|++ |-.++.+||..|+++-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6779999999999999888876 7778889999999887666553
No 27
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.61 E-value=35 Score=24.60 Aligned_cols=49 Identities=37% Similarity=0.419 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
++.+.+||.+|...+..+..=| .++..+=..-..|.-||..|+..+...
T Consensus 7 fd~l~~le~~l~~l~~el~~LK-----~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALK-----KQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888877777775544 333455566677788888888888853
No 28
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=71.48 E-value=30 Score=27.40 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 141 RKNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 141 RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
|+-+.-..+|..|+.--+.|+++|..|+.-|.-.
T Consensus 48 rrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFL 81 (195)
T PF10226_consen 48 RRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFL 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4445566777788888888999999999877633
No 29
>smart00338 BRLZ basic region leucin zipper.
Probab=71.15 E-value=21 Score=22.76 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 135 LSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 135 L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
-...|.||. ..+..|..++..|..+|..|..++..
T Consensus 17 A~~~R~rKk----~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 17 ARRSRERKK----AEIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455553 34566777777777777777766653
No 30
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=69.26 E-value=26 Score=22.22 Aligned_cols=34 Identities=38% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 135 LSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 135 L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
-...|.||. ..+..|..++..|..+|..|...+.
T Consensus 17 Ar~~R~RKk----~~~~~Le~~~~~L~~en~~L~~~~~ 50 (64)
T PF00170_consen 17 ARRSRQRKK----QYIEELEEKVEELESENEELKKELE 50 (64)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556663 3446666666666666666665544
No 31
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=68.47 E-value=30 Score=22.52 Aligned_cols=50 Identities=32% Similarity=0.463 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 123 ELQQLENQLERSLSRIRAR--KNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 123 EL~~Le~~Le~~L~~Ir~R--K~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+|+.|+..|+.-+.....= -+.++..+...++..-..|.+.|..-+.+++
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888777766321 2334444444444444444444444444444
No 32
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.32 E-value=40 Score=23.95 Aligned_cols=45 Identities=20% Similarity=0.402 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 127 LENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 127 Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++...+.++..+..|++.+ ...|..+.++...+...-..++..+.
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666444 66777777777777666666666554
No 33
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=67.86 E-value=42 Score=30.27 Aligned_cols=60 Identities=18% Similarity=0.450 Sum_probs=37.6
Q ss_pred ceeeecCCCCc-ccccc---ccc-------cchhhhhh-hhhcccCcceeeeeecCCCCcccccccccchhhhhhhccc
Q 028911 7 QMKRIENATSR-QVTFS---KRR-------NGLLKKAF-ELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKT 73 (202)
Q Consensus 7 ~ik~I~n~~~R-~vtfs---KRr-------~GL~KKA~-ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~ 73 (202)
.|.-|.+.+.| .+.|. ||. .+|+|+-. +-++-| -+++|.++|++-.| ++.+||..|..+-
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~---~l~~iL~~f~~~R 328 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL---NLKEILQEFLDHR 328 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe---CHHHHHHHHHHHH
Confidence 36666777766 34442 332 25554432 223333 67888899998888 6799999987753
No 34
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.24 E-value=42 Score=27.22 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 119 CTIDELQQLENQLERSLSRIRAR--KNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 119 Ls~~EL~~Le~~Le~~L~~Ir~R--K~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
-..+|+..|+..++..-...... +..-+..|.+.+.+....|.++|+.|+.++...
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 34567777777777666655333 344567888888888899999999999998743
No 35
>PRK09343 prefoldin subunit beta; Provisional
Probab=66.20 E-value=48 Score=24.11 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 130 QLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 130 ~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
..+.+...+..|+ +.+...|..|.++...|.+.-..+...+.
T Consensus 68 d~~e~~~~l~~r~-E~ie~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 68 DKTKVEKELKERK-ELLELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554 33346677777777776666666665554
No 36
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=65.53 E-value=29 Score=21.29 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 135 LSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 135 L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
-.+-|.|| ...+..|...+..|..+|..|..++.
T Consensus 16 A~r~R~rk----k~~~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 16 ARRSRQRK----KQREEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555 34456778888888888888887765
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.92 E-value=53 Score=26.38 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=5.0
Q ss_pred hhHhHHHHHHH
Q 028911 96 NMMTKLEFLEV 106 (202)
Q Consensus 96 kL~~~~e~le~ 106 (202)
.++..+..++.
T Consensus 90 ~~~~rlp~le~ 100 (206)
T PRK10884 90 SLRTRVPDLEN 100 (206)
T ss_pred cHHHHHHHHHH
Confidence 34444444443
No 38
>PHA03162 hypothetical protein; Provisional
Probab=63.00 E-value=61 Score=24.13 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=44.5
Q ss_pred ccchHHHHHHHhhhHhHHHHHHHHHhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028911 84 EDHSQHAKEETSNMMTKLEFLEVAKRKLLGDG----LEPCTIDELQQLENQLERSLSRIRARK 142 (202)
Q Consensus 84 ~~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~----L~~Ls~~EL~~Le~~Le~~L~~Ir~RK 142 (202)
+..++.|..++.+|+-++..|...++.-.|.+ -..|+..+=+-+-.....+|...-++|
T Consensus 12 ~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999998887766655 345888887777777776666655544
No 39
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=62.61 E-value=50 Score=23.62 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 132 ERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 132 e~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
-..+..+-..- .-+.+++..|+.....|.+||..|+-...
T Consensus 7 ~~~l~~le~~l-~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 7 FDRLDQLEQQL-GQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333 34578899999999999999999987655
No 40
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=62.38 E-value=59 Score=23.77 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=41.3
Q ss_pred chHHHHHHHhhhHhHHHHHHHHHhhhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028911 86 HSQHAKEETSNMMTKLEFLEVAKRKLLG----DGLEPCTIDELQQLENQLERSLSRIRARK 142 (202)
Q Consensus 86 ~~~~l~~e~~kL~~~~e~le~~~r~l~G----e~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK 142 (202)
.++.|..++.+|+-++..|...+++-.| .+-.-|+..+=+.+-.....+|...-.+|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999998888887 66777998888777777777776655554
No 41
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=62.33 E-value=3.9 Score=29.45 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=29.1
Q ss_pred Cccccccccccch---------hhhhhhhhcccCcceeeeeecCCCCc
Q 028911 16 SRQVTFSKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGKL 54 (202)
Q Consensus 16 ~R~vtfsKRr~GL---------~KKA~ELsvLCda~valivfs~~gk~ 54 (202)
.+-..||+-|+-| +-|..|+.+-||.|+-+++..+.|.+
T Consensus 49 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg~ 96 (111)
T COG0139 49 GEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGGP 96 (111)
T ss_pred CeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 3444557767644 45578999999999999999986643
No 42
>PHA03155 hypothetical protein; Provisional
Probab=61.23 E-value=60 Score=23.51 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=45.7
Q ss_pred cchHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028911 85 DHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (202)
Q Consensus 85 ~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK 142 (202)
..++.|..++.+|+-++..|...+++-.+.+-.-|+..+=..+-.....+|...-++|
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999998887766666677999888888777777777665554
No 43
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=60.37 E-value=44 Score=28.56 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 123 ELQQLENQLERSLSRIRARKNQL--FREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 123 EL~~Le~~Le~~L~~Ir~RK~~l--l~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
++..|...|..........-.++ +..+|-.++++.+.+.-||..|...+...
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455555555555554443333 45778888888888888888888877644
No 44
>PF14645 Chibby: Chibby family
Probab=59.32 E-value=16 Score=26.61 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 149 QIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 149 ~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
....++++.+.|++||+.|+-+++
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666777777777777665
No 45
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=59.13 E-value=90 Score=24.84 Aligned_cols=18 Identities=39% Similarity=0.375 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028911 151 EKLKEKEKILIEENTKLR 168 (202)
Q Consensus 151 ~~l~~k~~~l~~en~~L~ 168 (202)
..|-.++..|+++|..|.
T Consensus 98 q~L~~~i~~Lqeen~kl~ 115 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLL 115 (193)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 333344444444444443
No 46
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=59.02 E-value=7.8 Score=21.30 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=17.6
Q ss_pred hhhcccCcceeeeeecCCCC--ccccccc
Q 028911 34 ELSVLCDAEVALIIFSPRGK--LYEFSSC 60 (202)
Q Consensus 34 ELsvLCda~valivfs~~gk--~~~~~s~ 60 (202)
.|+--||+-|-+-||...|. +|-.++|
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNP 30 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-T
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 36667999999999999995 4544445
No 47
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.08 E-value=1.4e+02 Score=27.35 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 117 EPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKL 167 (202)
Q Consensus 117 ~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L 167 (202)
+..++.++.++-..+...+..++.+...+ ..++..++++...|+.+-..|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 35688899999999888888888776443 445555555555555444333
No 48
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=57.35 E-value=70 Score=23.00 Aligned_cols=48 Identities=38% Similarity=0.477 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
++.+.+||.+|-..+..|-.=|.++ ..+=..-..|.-||..|++.+..
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 4677888888888888776655443 44445566778888888998887
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=56.30 E-value=1.9e+02 Score=29.04 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=14.9
Q ss_pred ccchHHHHHHHhhhHhHHHHHHHH
Q 028911 84 EDHSQHAKEETSNMMTKLEFLEVA 107 (202)
Q Consensus 84 ~~~~~~l~~e~~kL~~~~e~le~~ 107 (202)
++.++.++.+...++.++-.++..
T Consensus 660 d~~ie~le~e~~~l~~~~~~l~~~ 683 (1074)
T KOG0250|consen 660 DDEIEDLEREASRLQKEILELENQ 683 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777655555543
No 50
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=55.28 E-value=75 Score=25.34 Aligned_cols=29 Identities=31% Similarity=0.594 Sum_probs=20.5
Q ss_pred cCcceeeeeecCCCCcccccccccchhhhhhhccc
Q 028911 39 CDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKT 73 (202)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~s~~~il~RY~~~~ 73 (202)
-||.+||+|||.++. | |.+.+++=|.+..
T Consensus 91 rgaqa~vLVFSTTDr-~-----SFea~~~w~~kv~ 119 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDR-Y-----SFEATLEWYNKVQ 119 (246)
T ss_pred ccccceEEEEecccH-H-----HHHHHHHHHHHHH
Confidence 589999999998754 2 4566666665543
No 51
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=54.96 E-value=18 Score=30.46 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=31.3
Q ss_pred ceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc-cccchhhhhhhc
Q 028911 7 QMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQK 71 (202)
Q Consensus 7 ~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s-~s~~~il~RY~~ 71 (202)
.+..|.|.+.|..+=|+ .||..|.+ ++| .|-+ |.|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 45678888888776332 57888875 444 3545 699999999865
No 52
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=54.22 E-value=9.5 Score=28.96 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=25.3
Q ss_pred CcceeeeeecCCCCccccccc-ccchhhhhhhcc
Q 028911 40 DAEVALIIFSPRGKLYEFSSC-SINKTIERYQKK 72 (202)
Q Consensus 40 da~valivfs~~gk~~~~~s~-s~~~il~RY~~~ 72 (202)
...++-||+ ++|++.+|..| .+.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCC
Confidence 455555555 78999999888 899999998665
No 53
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.98 E-value=2e+02 Score=27.17 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 122 DELQQLENQLERSLSRIR-----ARKNQLFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 122 ~EL~~Le~~Le~~L~~Ir-----~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
.++..|+..|+..-..++ .|+-+.+...|..|+++...-...-..|..+
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666555554 2344556667777776654433333344433
No 54
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.23 E-value=1.8e+02 Score=26.50 Aligned_cols=72 Identities=17% Similarity=0.304 Sum_probs=38.0
Q ss_pred HHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 88 QHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKL 167 (202)
Q Consensus 88 ~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L 167 (202)
..++.++..+..+++.+..++..+. +....+..++..++...| +-+.++.+.|+.....++..-..|
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~----~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSET----QELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554433221 122334455555555544 334556666666666666666667
Q ss_pred HHHHc
Q 028911 168 REQCG 172 (202)
Q Consensus 168 ~~~~~ 172 (202)
..++.
T Consensus 136 ~~~l~ 140 (472)
T TIGR03752 136 QRRLA 140 (472)
T ss_pred HHHHh
Confidence 76663
No 55
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=52.85 E-value=55 Score=20.43 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKL 167 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L 167 (202)
++|++|+.++-..-+..-...... .+++..+++.+.++...|..--..|
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~-~~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADR-RALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777762211111111111 2555666666666665555544433
No 56
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.84 E-value=2.3e+02 Score=27.58 Aligned_cols=87 Identities=22% Similarity=0.226 Sum_probs=52.5
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhh------cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAKRKL------LGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKIL 160 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~r~l------~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l 160 (202)
++-|+.|..-|+.++..|...+|.- .|..--++-+--|+.|-..|+.-|..-..- -+++...-++|-+-...+
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~-~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKS-QELLQSKNEELLKVIENQ 467 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHh-HHHHHHhHHHHHHHHHHH
Confidence 3446677777777777666655542 121112344446666666665555544222 246666677777777888
Q ss_pred HHHHHHHHHHHccC
Q 028911 161 IEENTKLREQCGMQ 174 (202)
Q Consensus 161 ~~en~~L~~~~~~~ 174 (202)
.+||+.|.+.+.+.
T Consensus 468 ~~Enk~~~~~~~ek 481 (861)
T PF15254_consen 468 KEENKRLRKMFQEK 481 (861)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999888776643
No 57
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=52.30 E-value=67 Score=22.73 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
++|++|+..+-......-..+. .-..++.+++..+..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIP-ERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888776554322111121 2235677777777777777777666666654
No 58
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=52.00 E-value=11 Score=27.10 Aligned_cols=28 Identities=36% Similarity=0.263 Sum_probs=21.7
Q ss_pred hhhhhcccCcceeeeeecCCCCccccccc
Q 028911 32 AFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 32 A~ELsvLCda~valivfs~~gk~~~~~s~ 60 (202)
-.+|-.|-|| +|+..||++|++.+|-..
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G~ 30 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKGE 30 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeecC
Confidence 4567777777 566789999999998663
No 59
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=51.79 E-value=1.1e+02 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 145 LFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 145 ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
.+..+...|..++..|+.+|..|..++..
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555566777777788888888766654
No 60
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=50.31 E-value=5.7 Score=26.65 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=27.6
Q ss_pred ccccccccccchhhh---------hhhhhcccCcceeeeeecCCCC
Q 028911 17 RQVTFSKRRNGLLKK---------AFELSVLCDAEVALIIFSPRGK 53 (202)
Q Consensus 17 R~vtfsKRr~GL~KK---------A~ELsvLCda~valivfs~~gk 53 (202)
+-+-||+-|++|-.| +.|+.+-||.|.-|+..-|.|.
T Consensus 18 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 18 RATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp B-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred cEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 444568888777555 5789999999999999998886
No 61
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=49.50 E-value=97 Score=22.33 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 132 ERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 132 e~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
-.++..+-..- ..+..++..|+.....|.+||..|+-...
T Consensus 7 fd~l~~le~~l-~~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 7 FDALDDLEQNL-GVLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443333 34467888999999999999998886644
No 62
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.49 E-value=71 Score=21.11 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
+-..+.|..|+.+...|.++|..|..
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~ 39 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKE 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33445555555555555555555553
No 63
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=49.40 E-value=45 Score=20.38 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=11.7
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 028911 115 GLEPCTIDELQQLENQLER 133 (202)
Q Consensus 115 ~L~~Ls~~EL~~Le~~Le~ 133 (202)
.|..+|++||++.-..|+.
T Consensus 4 fLk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 4 FLKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGGS-HHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhCCH
Confidence 4567888888775555443
No 64
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.33 E-value=1.1e+02 Score=27.95 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
+++..+...++.+...++.||..|+.+++.
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 455566667788888999999999999864
No 65
>PRK11637 AmiB activator; Provisional
Probab=47.93 E-value=2e+02 Score=25.50 Aligned_cols=79 Identities=13% Similarity=0.251 Sum_probs=40.2
Q ss_pred cchHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 028911 85 DHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKN--QLFREQIEKLKEKEKILIE 162 (202)
Q Consensus 85 ~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~--~ll~~~i~~l~~k~~~l~~ 162 (202)
.+++.++.++..++.++..++...... ..+|..++.+|...-..|..... .-+..+|..++.+...++.
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~---------~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASL---------LAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555554444332 23455566666655555543322 2334555666655555555
Q ss_pred HHHHHHHHHc
Q 028911 163 ENTKLREQCG 172 (202)
Q Consensus 163 en~~L~~~~~ 172 (202)
+-..++..+.
T Consensus 118 ~l~~~~~~l~ 127 (428)
T PRK11637 118 QQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 66
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=46.64 E-value=64 Score=22.73 Aligned_cols=47 Identities=28% Similarity=0.187 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 115 GLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 115 ~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
...+++++++. ++.-......+++.|..+...+..+|..|...+...
T Consensus 60 ~~~~l~P~~~i-------------~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 60 WRHSLTPEEDI-------------RAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCCChHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667776653 333344556778888999999999999999988754
No 67
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.41 E-value=62 Score=22.96 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028911 153 LKEKEKILIEENTKLREQC 171 (202)
Q Consensus 153 l~~k~~~l~~en~~L~~~~ 171 (202)
++++...++.+|..|..++
T Consensus 39 ~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 39 QQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 68
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=45.94 E-value=1.4e+02 Score=24.75 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 143 NQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++.|..+.+.|+.+-+.|.-+|..|...++
T Consensus 106 n~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 106 NEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 355666777777777777777777777766
No 69
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.80 E-value=11 Score=30.46 Aligned_cols=19 Identities=37% Similarity=0.847 Sum_probs=15.6
Q ss_pred cceeeeeecCCCCccc--ccc
Q 028911 41 AEVALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 41 a~valivfs~~gk~~~--~~s 59 (202)
-|-||-||||+|.++. |+.
T Consensus 4 ydraltvFSPDGhL~QVEYAq 24 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQ 24 (249)
T ss_pred cccceEEECCCCCEEeeHhHH
Confidence 4678999999999985 654
No 70
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=45.13 E-value=1.1e+02 Score=21.59 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 117 EPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 117 ~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
-++++.|+..+-..... .....++..+++.+.++...++..-..|...+
T Consensus 57 ~G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 57 LGFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred cCCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888877665442 34445666666777776666666666655544
No 71
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=44.95 E-value=2e+02 Score=24.59 Aligned_cols=79 Identities=10% Similarity=0.190 Sum_probs=48.9
Q ss_pred HHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 90 AKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 90 l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
|+.+++.|+-+++.+......-.. --++|..-+....+..-+.|+ -..+.+...|-....+...|.-||..|..
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~-----ky~ediei~Kekn~~Lqk~lK-LneE~ltkTi~qy~~QLn~L~aENt~L~S 77 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEK-----KYLEDIEILKEKNDDLQKSLK-LNEETLTKTIFQYNGQLNVLKAENTMLNS 77 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhhhHHHHHHHHHHHhH
Confidence 566777777777666544322111 114555555555555444443 34456677777888888888888888888
Q ss_pred HHccC
Q 028911 170 QCGMQ 174 (202)
Q Consensus 170 ~~~~~ 174 (202)
+++..
T Consensus 78 kLe~E 82 (305)
T PF14915_consen 78 KLEKE 82 (305)
T ss_pred HHHHh
Confidence 88643
No 72
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=44.92 E-value=68 Score=22.88 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
+++++|+..+-...+..-...-..-..++.++.+.+.++...|+..-+.|...
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAF 108 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777765544322101111112344455555555555555444444443
No 73
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=44.65 E-value=2.4e+02 Score=25.46 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=23.1
Q ss_pred ceeeeeecCCCCcccccccccchhhhhhhcc
Q 028911 42 EVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (202)
Q Consensus 42 ~valivfs~~gk~~~~~s~s~~~il~RY~~~ 72 (202)
-+-+++|+++|++..|. ++.+||..|..+
T Consensus 298 ~~Nm~~~d~~g~~~~~~--~~~~Il~~f~~~ 326 (439)
T PHA02592 298 SQNITVINENGKLKVYE--NAEDLIRDFVEI 326 (439)
T ss_pred eeeEEEEecCCeeeecC--CHHHHHHHHHHH
Confidence 36788999999988884 468899988664
No 74
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.50 E-value=1.6e+02 Score=22.68 Aligned_cols=84 Identities=23% Similarity=0.322 Sum_probs=48.4
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAKRKL--LGDGLEPCTIDELQQLENQLERSLSRIRARKNQLF---------REQIEKLKE 155 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~r~l--~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll---------~~~i~~l~~ 155 (202)
+..++-.+..++.++..++..++.. +|++ |.+-|..+|.-.-..-...|.+|-.+|. ...+...+.
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~---L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGEG---LHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666555554443 4544 6666666666666666666655544432 234455666
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 028911 156 KEKILIEENTKLREQCGM 173 (202)
Q Consensus 156 k~~~l~~en~~L~~~~~~ 173 (202)
|...+..++..++..+..
T Consensus 85 Kl~~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777777766553
No 75
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=42.16 E-value=14 Score=30.09 Aligned_cols=24 Identities=21% Similarity=0.571 Sum_probs=19.9
Q ss_pred hcccCcceeeeeecCCCCccc--ccc
Q 028911 36 SVLCDAEVALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 36 svLCda~valivfs~~gk~~~--~~s 59 (202)
||=.|-|.|.-+|||+|++|+ |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 455788999999999999996 665
No 76
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.15 E-value=59 Score=21.06 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 145 LFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 145 ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
-+..++..++++...+..+|..|..++...
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777788888888888888777765
No 77
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=41.99 E-value=81 Score=31.42 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 131 LERSLSRIRARKNQ-LFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 131 Le~~L~~Ir~RK~~-ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
|+.-|...|+|-+. -+..+|-.++++...++.++...+.+.+..
T Consensus 283 LeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL 327 (1195)
T KOG4643|consen 283 LEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEEL 327 (1195)
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44455555555332 234556666666666666666666666654
No 78
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=40.76 E-value=18 Score=27.06 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=20.1
Q ss_pred hhcccCcceeeeeecCCCCcccccc
Q 028911 35 LSVLCDAEVALIIFSPRGKLYEFSS 59 (202)
Q Consensus 35 LsvLCda~valivfs~~gk~~~~~s 59 (202)
+.++|||||-++|-+.+.+-..||.
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p 83 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPP 83 (148)
T ss_pred HHHhhccceeeeeecccCccccCCc
Confidence 6789999999999998877555543
No 79
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.73 E-value=1.7e+02 Score=22.72 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 142 KNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 142 K~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
+..-..++++.++++....+.+...|++|.+.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777777664
No 80
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=40.37 E-value=2.4e+02 Score=24.31 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=37.2
Q ss_pred cccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc---cccchhhhhhhcccccccccccccccchHHHHHHHhh
Q 028911 20 TFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS---CSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSN 96 (202)
Q Consensus 20 tfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s---~s~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~k 96 (202)
++..|..+|-++-.|+--.|+ ..|++..++. .++-.++..+...... ...++..+++.+..
T Consensus 34 qLqer~q~LKkk~~el~~~~~---------~~~d~~~~~~~~~~~La~lL~~sre~Nk~-------L~~Ev~~Lrqkl~E 97 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAA---------GFGDPSIPPEKENKNLAQLLSESREQNKK-------LKEEVEELRQKLNE 97 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---------ccCCccCCcccchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 344566676666666653222 2233333332 1455566655442211 12345566666666
Q ss_pred hHhHHHHHHHHH
Q 028911 97 MMTKLEFLEVAK 108 (202)
Q Consensus 97 L~~~~e~le~~~ 108 (202)
++.++..|...+
T Consensus 98 ~qGD~KlLR~~l 109 (319)
T PF09789_consen 98 AQGDIKLLREKL 109 (319)
T ss_pred HhchHHHHHHHH
Confidence 677766666654
No 81
>PF05325 DUF730: Protein of unknown function (DUF730); InterPro: IPR007989 This family consists of several uncharacterised Arabidopsis thaliana proteins of unknown function.
Probab=40.33 E-value=59 Score=22.85 Aligned_cols=25 Identities=32% Similarity=0.733 Sum_probs=17.3
Q ss_pred hhcccCcceeeeeecC-----CCCccccccc
Q 028911 35 LSVLCDAEVALIIFSP-----RGKLYEFSSC 60 (202)
Q Consensus 35 LsvLCda~valivfs~-----~gk~~~~~s~ 60 (202)
..|-||+.+.|||-.+ +|++| |+-|
T Consensus 19 v~ie~dcnakvvvats~dpvts~kly-fscp 48 (122)
T PF05325_consen 19 VPIECDCNAKVVVATSRDPVTSGKLY-FSCP 48 (122)
T ss_pred cceeccCCceEEEEeccCCcccceee-ecCc
Confidence 3577999999888764 46666 4334
No 82
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=40.33 E-value=75 Score=22.36 Aligned_cols=30 Identities=33% Similarity=0.398 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
|+..++.+.|+++...+.++|..|...+..
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~k 40 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNK 40 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999887763
No 83
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=40.31 E-value=1.3e+02 Score=25.19 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=29.2
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 109 RKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (202)
Q Consensus 109 r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll 146 (202)
.+..-|.|++|+++||.+|-..|-..+..|-+.-.+.+
T Consensus 209 ~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~v 246 (285)
T PF06937_consen 209 PHYSREELNSMTLDELKQLNEKLLQQIQDVFEELTQQV 246 (285)
T ss_pred cccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566899999999999999988887777765544443
No 84
>PRK13824 replication initiation protein RepC; Provisional
Probab=39.87 E-value=76 Score=28.23 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=53.9
Q ss_pred hhhhcccCcceeeeee--cCCCCccccccc----------ccchhhhhhhcccccccccccccccchHHHHHHHhhhHhH
Q 028911 33 FELSVLCDAEVALIIF--SPRGKLYEFSSC----------SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTK 100 (202)
Q Consensus 33 ~ELsvLCda~valivf--s~~gk~~~~~s~----------s~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~ 100 (202)
.-|+.|.+| +||++ ||+||=|-+-.. ++..++.||....... +..+.-+.++..++.+
T Consensus 102 Rhla~Lvea--GLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~A--------~~~~ae~~~~r~lr~~ 171 (404)
T PRK13824 102 RHLAALVEA--GLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEALA--------EQVAAERKALRRLRER 171 (404)
T ss_pred HHHHHHHHC--CCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 345566554 46666 589998865321 4556777776654322 2223334556666666
Q ss_pred HHHHHHHHhhhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028911 101 LEFLEVAKRKLLG----DGLEPCTIDELQQLENQLERSLSRIRAR 141 (202)
Q Consensus 101 ~e~le~~~r~l~G----e~L~~Ls~~EL~~Le~~Le~~L~~Ir~R 141 (202)
+..+....+.+.. +.+.+ +...+...+...+..++.+
T Consensus 172 it~~rRdi~~li~~a~~~~~~~----~w~~~~~~~~~i~~~l~R~ 212 (404)
T PRK13824 172 LTLCRRDIAKLIEAAIEEGVPG----DWEGVEQRFRAIVARLPRR 212 (404)
T ss_pred HHHHHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHHHcCCC
Confidence 6666666655442 22221 4667777777777766533
No 85
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=39.26 E-value=82 Score=23.57 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++++..+-..+...-...-.....++.+++..+.++...|+..-..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~~ 111 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCIG 111 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888887765432111111222345666667777777777766666666655
No 86
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.20 E-value=4.1e+02 Score=26.61 Aligned_cols=87 Identities=20% Similarity=0.320 Sum_probs=46.9
Q ss_pred chHHHHHHHhhhHhHHHHHHHHHhhh------cCCCCCCCCHHHHHHHHH---HHHHHHHHHHHH------HHHHHHHHH
Q 028911 86 HSQHAKEETSNMMTKLEFLEVAKRKL------LGDGLEPCTIDELQQLEN---QLERSLSRIRAR------KNQLFREQI 150 (202)
Q Consensus 86 ~~~~l~~e~~kL~~~~e~le~~~r~l------~Ge~L~~Ls~~EL~~Le~---~Le~~L~~Ir~R------K~~ll~~~i 150 (202)
..+.|+.++..++++++.|+..+--+ .|.+.-..|--++.+||. .|-.+|-+.|.- -.+.+..++
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34456777777777777766544222 255555566666666665 466666665532 223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 028911 151 EKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 151 ~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+..+.....|...-..|..++.
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d 427 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELD 427 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 4444444444444444544443
No 87
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=38.66 E-value=3e+02 Score=24.95 Aligned_cols=31 Identities=35% Similarity=0.334 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 138 IRARKNQLFREQIEKLKEKEKILIEENTKLR 168 (202)
Q Consensus 138 Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~ 168 (202)
+-++|.+-+.+.+..+++....+.|+|+.|.
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~ 409 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEEREENKKLI 409 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555
No 88
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.37 E-value=45 Score=28.52 Aligned_cols=25 Identities=48% Similarity=0.585 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 149 QIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 149 ~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
+++.|++|.+.|++||..|+.....
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999987553
No 89
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=38.20 E-value=22 Score=28.60 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=36.4
Q ss_pred cchhhhh----hhhhcccCcceeeeeecCC---CCcccccccccchhhhhhhcc
Q 028911 26 NGLLKKA----FELSVLCDAEVALIIFSPR---GKLYEFSSCSINKTIERYQKK 72 (202)
Q Consensus 26 ~GL~KKA----~ELsvLCda~valivfs~~---gk~~~~~s~s~~~il~RY~~~ 72 (202)
.-|+.|- .|++|-+|-++.|++.+|+ +..-.|+...++.|+..|...
T Consensus 35 ~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 35 TRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHHH
Confidence 3466654 7999999999999999975 234458887888888888763
No 90
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.93 E-value=1.3e+02 Score=21.37 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSL---SRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L---~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
++|++|+..+-...+..- ... ....+++.+++..+..+...|+..-..|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~l 111 (112)
T cd01282 56 GLTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDAYL 111 (112)
T ss_pred CCCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477777777655433221 111 12235666666666676666666555555443
No 91
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=37.58 E-value=1.7e+02 Score=28.28 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=43.8
Q ss_pred ceeeeeecCCCCccccccc-----ccchhhhhhhcccccccccccccccchHHHHHHHhhhHhHHHHHHHHHhhhcCCCC
Q 028911 42 EVALIIFSPRGKLYEFSSC-----SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGL 116 (202)
Q Consensus 42 ~valivfs~~gk~~~~~s~-----s~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L 116 (202)
++.|+.---.||-++|||| +++.=.-+|.+.-.....+.....-+. ..-+..|..+++.++.... -.|-
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldf---Ekpi~ele~ki~el~~~~~-~~~~-- 122 (762)
T PLN03229 49 DLAVVAKIRKGKKHEYPWPADPDPNVKGGVLSYLSHFKPLKEKPKPVTLDF---EKPLVDLEKKIVDVRKMAN-ETGL-- 122 (762)
T ss_pred ceEEEeeeccccccCCCCCCCCCCCcccchhhHhhccCCCCCCCCCCCcch---hhHHHHHHHHHHHHHhhhh-cccc--
Confidence 3444444567888888886 444433344443222211111111121 2345666677766653211 1111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 028911 117 EPCTIDELQQLENQLERSLSRIRA 140 (202)
Q Consensus 117 ~~Ls~~EL~~Le~~Le~~L~~Ir~ 140 (202)
++ -+++..|+..+......|-+
T Consensus 123 -~~-~~ei~~Le~k~~~~~~~iy~ 144 (762)
T PLN03229 123 -DF-SDQIISLESKYQQALKDLYT 144 (762)
T ss_pred -cH-HHHHHHHHHHHHHHHHHHHc
Confidence 12 24677777777666555543
No 92
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.56 E-value=4.8e+02 Score=26.98 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKN------QLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~------~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+.++++|+.--..+...+..++.... +-+..+|..|+.++..+..+...+...+.
T Consensus 821 ~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 821 DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888777777777777643322 22345666666655555555544444433
No 93
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.34 E-value=92 Score=18.56 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 141 RKNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 141 RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
+-...|....+.|+..-..|..||..|+.++..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567778888888888899999999888764
No 94
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=36.30 E-value=3.4e+02 Score=24.76 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 101 LEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 101 ~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
....+.++|+++.. .-++-|+......+.+.+..+.+|.+++ ..+|+.|..|...|.+.-+.|-.-+.
T Consensus 405 fR~Vk~~qRkl~e~---~nsl~d~aK~~~~myd~~~~l~~~q~~l-e~qI~~Le~kl~~l~~~l~s~~~~~~ 472 (489)
T KOG3684|consen 405 FRSVKWEQRKLSEQ---ANSLVDLAKTQNDMYDLLQELHSRQEEL-EKQIDTLESKLEALTASLSSLPGLLA 472 (489)
T ss_pred HHHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCchhhc
Confidence 33444555666643 3457799999999999999999998776 68899999988888887766655444
No 95
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.66 E-value=1.8e+02 Score=21.34 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 132 ERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 132 e~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
+.++..+..|+ +.+.-+|.+|.+++..+.++-..|+..+-.
T Consensus 69 ~~~~~eL~er~-E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERK-ETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555 455677888888888888887777776653
No 96
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=35.54 E-value=66 Score=23.50 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Q 028911 149 QIEKLKEKEKILIEENTKLREQCGMQP 175 (202)
Q Consensus 149 ~i~~l~~k~~~l~~en~~L~~~~~~~~ 175 (202)
.++.|..+...|+-||+.|++++....
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 467788889999999999999998554
No 97
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=35.49 E-value=31 Score=23.26 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=22.9
Q ss_pred ceeeeeecCCC--Cccccccc-ccchhhhhhhc
Q 028911 42 EVALIIFSPRG--KLYEFSSC-SINKTIERYQK 71 (202)
Q Consensus 42 ~valivfs~~g--k~~~~~s~-s~~~il~RY~~ 71 (202)
.+-++|++.+| |+|.++.+ ....++.+|..
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~T 40 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCT 40 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccC
Confidence 46788999887 57766664 78888999865
No 98
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=35.40 E-value=27 Score=19.38 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=14.3
Q ss_pred ceeeeeecCCCCccccccc
Q 028911 42 EVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 42 ~valivfs~~gk~~~~~s~ 60 (202)
.-.-..|||+|+-..|+|.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 4556789999999988874
No 99
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=35.29 E-value=1.5e+02 Score=21.74 Aligned_cols=54 Identities=7% Similarity=0.252 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-...+..-... .....++..++..+..+...|+..-..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAVS 110 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888877655432211111 112346666677777777666665555655544
No 100
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=34.74 E-value=2.3e+02 Score=22.31 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc
Q 028911 151 EKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 151 ~~l~~k~~~l~~en~~L~~~~~ 172 (202)
...+.....|...|..|..+++
T Consensus 166 k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 166 KKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455556666666554
No 101
>smart00338 BRLZ basic region leucin zipper.
Probab=34.69 E-value=1.2e+02 Score=19.11 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
+.|..+...|+.+...|..++..|...+
T Consensus 36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 36 EQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667777777888888888777665
No 102
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=34.30 E-value=13 Score=30.93 Aligned_cols=21 Identities=0% Similarity=0.102 Sum_probs=11.2
Q ss_pred cchHHHHHHHhhhHhHHHHHH
Q 028911 85 DHSQHAKEETSNMMTKLEFLE 105 (202)
Q Consensus 85 ~~~~~l~~e~~kL~~~~e~le 105 (202)
..++.++.|+.+|+-++|.+.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 344555566666655555444
No 103
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=34.29 E-value=1.5e+02 Score=21.54 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-..-+..-... ..-.+++..+++.+..+...|+..-..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02047 57 DMSLAEIRQLLRYQDKPEKSC-SDVNALLDEHISHVRARIIKLQALIEQLVDLRG 110 (127)
T ss_pred CCCHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788777654222111001 122346677777777777777776666665444
No 104
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.26 E-value=2.1e+02 Score=21.77 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=35.8
Q ss_pred HHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028911 88 QHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (202)
Q Consensus 88 ~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK 142 (202)
..+...+..|..+++.++..+..+.+ +-...+.+|...++..........+.||
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666555 3344777777777777777777777776
No 105
>PHA03155 hypothetical protein; Provisional
Probab=33.83 E-value=70 Score=23.20 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Q 028911 150 IEKLKEKEKILIEENTKLREQCGMQP 175 (202)
Q Consensus 150 i~~l~~k~~~l~~en~~L~~~~~~~~ 175 (202)
++.|..+...|+-||+.|++++....
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~~ 35 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQHG 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 56777888889999999999997543
No 106
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.48 E-value=1.6e+02 Score=20.93 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
+++++|+..+-.....+-... ....+++.+++..+.++...|......|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777665443210001 12234556666666666666666555555544
No 107
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.28 E-value=1.8e+02 Score=20.81 Aligned_cols=52 Identities=8% Similarity=0.184 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSL---SRIRARKNQLFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L---~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
+++++++..+-...+..- ..++ ...+++.+++..+..+...|+..-..|...
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~ 109 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLE-KMLEKIEKRRAELEQQRRDIDAALAELDAA 109 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666554433211 1111 122455666666666666655555554444
No 108
>PHA03162 hypothetical protein; Provisional
Probab=33.18 E-value=70 Score=23.81 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Q 028911 150 IEKLKEKEKILIEENTKLREQCGMQP 175 (202)
Q Consensus 150 i~~l~~k~~~l~~en~~L~~~~~~~~ 175 (202)
++.|..+...|+-||+.|++++....
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~~ 40 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEGT 40 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777888889999999999997553
No 109
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=32.96 E-value=1.4e+02 Score=22.75 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-......-...-.....++.+++..+.++...|+..-..|...+.
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i~ 121 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIG 121 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4778888777654322111001112345555566666666666666666665553
No 110
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=32.54 E-value=1.5e+02 Score=22.04 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-......-...-.....++.++++.+.++...|.+....|.....
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLND 112 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777776543211000000112345666666666666666665555554433
No 111
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=32.42 E-value=1.8e+02 Score=21.09 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-......-... .....++..++..+.++...|+.....|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 110 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRAS-ADVKALALEHIAELERKIAELQAMRRTLQQLAD 110 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888887654322111011 112356777777777777777776666666554
No 112
>PHA01750 hypothetical protein
Probab=32.02 E-value=1.5e+02 Score=19.36 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 147 REQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 147 ~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
..+|+.++.+..+++++-+.+.+++
T Consensus 48 ~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 48 KTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3344444444444555555554443
No 113
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=31.77 E-value=31 Score=22.24 Aligned_cols=30 Identities=17% Similarity=0.520 Sum_probs=20.8
Q ss_pred cCcceeeeeecCCCCccccccc-ccchhhhhh
Q 028911 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERY 69 (202)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~-s~~~il~RY 69 (202)
|+..-.++|+ |.|..|...+| .+..|++.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 6666566665 67788887776 777777653
No 114
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.77 E-value=1.2e+02 Score=25.80 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 115 GLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKL 167 (202)
Q Consensus 115 ~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L 167 (202)
.-++||.+|-.. |.+||.||.+|+ ++|+.|+..+....+|-..|
T Consensus 7 ep~~Ls~~E~~e--------L~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 7 EPNDLSEEERME--------LENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCCHHHHHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 346677777555 456999998875 78899998887776665444
No 115
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=31.70 E-value=1.9e+02 Score=20.47 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=10.0
Q ss_pred HHHHHHhhhHhHHHHH
Q 028911 89 HAKEETSNMMTKLEFL 104 (202)
Q Consensus 89 ~l~~e~~kL~~~~e~l 104 (202)
.|..|++.|+.+++.+
T Consensus 9 ~w~aEYe~LKEEi~~l 24 (99)
T PF13758_consen 9 TWEAEYEGLKEEIEAL 24 (99)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4556666666666665
No 116
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=31.61 E-value=33 Score=24.11 Aligned_cols=30 Identities=37% Similarity=0.376 Sum_probs=22.6
Q ss_pred hhhhhhhcccCcceeeeeecCCCCccccccc
Q 028911 30 KKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 30 KKA~ELsvLCda~valivfs~~gk~~~~~s~ 60 (202)
-|-.||--+-|| +|.=.|||+||+.+|-++
T Consensus 3 ekLdeLlqi~Gv-~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 3 EKLDELLQIKGV-MAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hhHHHHhCccce-eEeceeCCCCceEEeeCC
Confidence 355677777676 445679999999999885
No 117
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.47 E-value=1.5e+02 Score=19.57 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCGMQP 175 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~~ 175 (202)
.-+..++..++++...++.+|..|+.++....
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35567788888888889999999998877543
No 118
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=31.21 E-value=1.7e+02 Score=21.04 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-...+. ..+ ..-..++.+++..++++...|..-...|...+.
T Consensus 56 G~sl~eI~~~l~~~~~--~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THC-REMYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred CCCHHHHHHHHhcccC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776643321 111 112245666677777777777666666666554
No 119
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=31.19 E-value=1.7e+02 Score=19.80 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 149 QIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 149 ~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
.|+..+..-..|..||..|+.-|+..
T Consensus 38 Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 38 RVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566788888888887744
No 120
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=31.01 E-value=1.7e+02 Score=21.59 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+++++|+.++-...+..=... ....+++.+++..+..+...|+..-..|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888877665432110001 111245666777777777777777666666554
No 121
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=30.82 E-value=4.3e+02 Score=24.98 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=42.3
Q ss_pred HHhhhHhHHHHHHHHHhhhcCCCCCCCCH-HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 93 ETSNMMTKLEFLEVAKRKLLGDGLEPCTI-DELQQLENQLERSLS----RIRARKNQLFREQIEKLKEKEKILIEENTKL 167 (202)
Q Consensus 93 e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~-~EL~~Le~~Le~~L~----~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L 167 (202)
|..+++++.+.+....-.+.+..+.-.++ +.+..++..++.... -+.....+=..+....|+..+..+.++|..|
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544443333322221111 234445555544444 4455555555566666666667777777777
Q ss_pred HHHHccC
Q 028911 168 REQCGMQ 174 (202)
Q Consensus 168 ~~~~~~~ 174 (202)
.+++...
T Consensus 202 e~ki~~l 208 (629)
T KOG0963|consen 202 EKKISSL 208 (629)
T ss_pred HHHHHHH
Confidence 7666544
No 122
>smart00340 HALZ homeobox associated leucin zipper.
Probab=30.77 E-value=96 Score=18.36 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Q 028911 150 IEKLKEKEKILIEENTKLREQCGMQP 175 (202)
Q Consensus 150 i~~l~~k~~~l~~en~~L~~~~~~~~ 175 (202)
.+.|++=-..|-+||..|++.+.+..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667767788899999998887543
No 123
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=30.40 E-value=3.6e+02 Score=23.29 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 028911 129 NQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQP 175 (202)
Q Consensus 129 ~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~~ 175 (202)
..|...|...|.+- .-+..+++.|+++...++.++..|+.++....
T Consensus 68 ~~La~lL~~sre~N-k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 68 KNLAQLLSESREQN-KKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 34444555666654 45688999999999999999999999988654
No 124
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=30.33 E-value=1.8e+02 Score=20.94 Aligned_cols=54 Identities=13% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+++++|+..+-......-... .....++..++..+.++...|+.....|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (126)
T cd04785 57 GFSLEEIRALLALSDRPDRSC-AEADAIARAHLADVRARIADLRRLEAELKRMVA 110 (126)
T ss_pred CCCHHHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888887654332210011 122356777777777877777777777776664
No 125
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=29.61 E-value=1.9e+02 Score=21.47 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+++++|+..+-..+...-.........++..+...+.++...|+.--..|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~ 111 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTKADWERLSRAWRDRLDERIAELQQLRDQLDGCIG 111 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888876554322110001111234555556666666666666666666664
No 126
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.59 E-value=5.1e+02 Score=24.79 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=30.5
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhh------cCCCCCCCCHHHHHHHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAKRKL------LGDGLEPCTIDELQQLENQLERS 134 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~r~l------~Ge~L~~Ls~~EL~~Le~~Le~~ 134 (202)
.+++..++..++++++..+..+..+ .+..-..+.-.+|.+|+.+|..+
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a 249 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRA 249 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHH
Confidence 5677778888888887777655433 12222345557888888777653
No 127
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.48 E-value=1.9e+02 Score=19.73 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 147 REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 147 ~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
..+|+.+.++...+..+-..+...+.
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666665554
No 128
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=29.35 E-value=53 Score=29.65 Aligned_cols=55 Identities=22% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFR-----------------------EQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~-----------------------~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+.++.+.--|-+.=|..|++||.+...... .+-..|++|+..|+.+|..|..++.
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~ 310 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLK 310 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHH
Confidence 455555555666666777777655333322 2334555566666666666555554
No 129
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=29.11 E-value=4e+02 Score=23.43 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=56.2
Q ss_pred cchhhhhhhcccccccccccccccchHHHHHHHhhhHhHHHHHHHHHhhhcC-C---CC---CCCCHHHHHHHHHHHHHH
Q 028911 62 INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLG-D---GL---EPCTIDELQQLENQLERS 134 (202)
Q Consensus 62 ~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~le~~~r~l~G-e---~L---~~Ls~~EL~~Le~~Le~~ 134 (202)
++.+++.|....-..... .......++..++..++++++..+..+..+.- . ++ .++....|.+|..++...
T Consensus 150 ~n~~~~~y~~~~~~~~~~--~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~ 227 (444)
T TIGR03017 150 ANAFAQAYIDTNIELKVE--PAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAA 227 (444)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHH
Confidence 455566777654432211 11233567778888888888877766544321 1 11 123345666666655544
Q ss_pred HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 028911 135 LSRIRARKNQL-------------FREQIEKLKEKEKILIEENTKLREQCGMQP 175 (202)
Q Consensus 135 L~~Ir~RK~~l-------------l~~~i~~l~~k~~~l~~en~~L~~~~~~~~ 175 (202)
-.....-..++ -...+..++.+...++.+-..|...+...+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~h 281 (444)
T TIGR03017 228 QAQVMDASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNH 281 (444)
T ss_pred HHHHHHHHHHHhccCCcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33221111000 012345566666666666666666555443
No 130
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=29.00 E-value=2.5e+02 Score=21.12 Aligned_cols=25 Identities=8% Similarity=0.367 Sum_probs=15.8
Q ss_pred cCCCCccccccc--ccchhhhhhhccc
Q 028911 49 SPRGKLYEFSSC--SINKTIERYQKKT 73 (202)
Q Consensus 49 s~~gk~~~~~s~--s~~~il~RY~~~~ 73 (202)
..++..-.|+.+ .|...|.+|..-.
T Consensus 8 ~~de~~G~~CPTgC~i~~~L~k~~~~v 34 (146)
T PF08702_consen 8 CADEDFGSYCPTGCGIQDFLDKYERDV 34 (146)
T ss_dssp CSSTTTTEEEE-HHHHHHHHHHHHHHH
T ss_pred ccCccccCCCCCcchHHHHHHHHccch
Confidence 344444444444 7999999997744
No 131
>PLN02372 violaxanthin de-epoxidase
Probab=28.97 E-value=4.3e+02 Score=23.77 Aligned_cols=28 Identities=25% Similarity=0.627 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 121 IDELQQLENQLERSLSRIRARKNQLFRE 148 (202)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~RK~~ll~~ 148 (202)
++|..+++.+|+.-...|+..-..++..
T Consensus 378 ~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 378 VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777665555544
No 132
>PF14282 FlxA: FlxA-like protein
Probab=28.77 E-value=2.1e+02 Score=20.17 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 92 EETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLR 168 (202)
Q Consensus 92 ~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~ 168 (202)
..+..|++++..|+..+..+... .+++.++-. .+.++|..+|..|+.....|+.+...-.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k~---------------~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--SDLDAEQKQ---------------QQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cCCCHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556665555555554432 344555443 4556666777777766666655544433
No 133
>PHA02109 hypothetical protein
Probab=28.70 E-value=1.8e+02 Score=22.83 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=26.5
Q ss_pred hhhcCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 109 RKLLGDGLEPCT--IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEE 163 (202)
Q Consensus 109 r~l~Ge~L~~Ls--~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~e 163 (202)
+...|+.|++|+ ++++..|+..|+ .+.++..+++-|..++..+
T Consensus 178 ~~~t~~~L~~~~~~L~~I~~L~~ki~------------~LS~E~~Q~~~Ki~N~R~~ 222 (233)
T PHA02109 178 RSHTGENLEGLTDKLKQISELTIKLE------------ALSDEACQVKHKILNLRAE 222 (233)
T ss_pred hccchhhhhhhhHHHHhhHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 455788888876 456666665544 4556666666666665543
No 134
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=28.62 E-value=1.7e+02 Score=21.35 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+++++|+..+-......-...-..-..++.++++.+.++...|+.-...|.....
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSCAEVKAIVDAKLELVDEKINELTKIRRSLKKLSD 112 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778887776653211000000122356777777777777777776666665544
No 135
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=28.44 E-value=28 Score=29.22 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=24.0
Q ss_pred ccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc
Q 028911 19 VTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 19 vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~ 60 (202)
+||.+|. ||+ +--+..++++.| .||.|.|+|+
T Consensus 210 ~tl~~~~-GLL-------lPG~p~~Gv~~~--~~k~y~F~s~ 241 (281)
T PF12018_consen 210 WTLAERD-GLL-------LPGNPSIGVLKY--KDKYYAFSSR 241 (281)
T ss_pred EEEeccC-cee-------ecCCCccceeEE--cCEEEEeCCH
Confidence 4677664 754 556678888888 6799999997
No 136
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=28.30 E-value=32 Score=30.23 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=27.6
Q ss_pred hhhhcccCcce--eeeeecCCCCccccccc---ccchhhhhhhccc
Q 028911 33 FELSVLCDAEV--ALIIFSPRGKLYEFSSC---SINKTIERYQKKT 73 (202)
Q Consensus 33 ~ELsvLCda~v--alivfs~~gk~~~~~s~---s~~~il~RY~~~~ 73 (202)
+=|||+||-+| |||--..+|=-|.-|.. ++++.+.-|...+
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhh
Confidence 56999999888 66555566644433322 6788888887755
No 137
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.15 E-value=6e+02 Score=25.89 Aligned_cols=65 Identities=26% Similarity=0.237 Sum_probs=36.2
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTK 166 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~ 166 (202)
+..+++|+++|+.+++..+ -.++..|+..|+.+.+-| .+=......|.+.+++.|+.
T Consensus 366 irElReEve~lr~qL~~ae---------------~~~~~el~e~l~esekli--------~ei~~twEEkl~ktE~in~e 422 (1714)
T KOG0241|consen 366 IRELREEVEKLREQLEQAE---------------AMKLPELKEKLEESEKLI--------KEITVTWEEKLRKTEEINQE 422 (1714)
T ss_pred HHHHHHHHHHHHHHHhhhh---------------hccchHHHHHHHHHHHHH--------HHHHhHHHHHHHHHHHHHHH
Confidence 4456666666666554432 223445555555555433 22223445566777778888
Q ss_pred HHHHHccC
Q 028911 167 LREQCGMQ 174 (202)
Q Consensus 167 L~~~~~~~ 174 (202)
++.+++..
T Consensus 423 rq~~L~~~ 430 (1714)
T KOG0241|consen 423 RQAQLESM 430 (1714)
T ss_pred HHHHHHHH
Confidence 77777644
No 138
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=27.81 E-value=3.3e+02 Score=24.49 Aligned_cols=75 Identities=7% Similarity=0.096 Sum_probs=36.0
Q ss_pred Cccccccc------ccch----hhhhhhcccccccccccccccchHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHH
Q 028911 53 KLYEFSSC------SINK----TIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTID 122 (202)
Q Consensus 53 k~~~~~s~------s~~~----il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~ 122 (202)
..++||+| .+.. .|.+|+-+.....+ .. -+. ...+..|..+++.|+.... ..+. +++ +
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--l~f---e~pi~ele~ki~el~~~~~-~~~~---~~~-~ 105 (431)
T PLN03230 38 LEHEYPWPEKLPQGELTTGALKILNRFKPLKNKPKP--VT--LPF---EKPIVDLENRIDEVRELAN-KTGV---DFS-A 105 (431)
T ss_pred CCCCCCCcccCCCCcccccHHHHHHhcCCCCCCCCC--Cc--cch---hhHHHHHHHHHHHHHhhhh-cccc---cHH-H
Confidence 34788876 3333 66666554433221 11 111 1345666667766653211 1111 222 4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028911 123 ELQQLENQLERSLSRIR 139 (202)
Q Consensus 123 EL~~Le~~Le~~L~~Ir 139 (202)
|+..||..++.....|-
T Consensus 106 ei~~l~~~~~~~~~~i~ 122 (431)
T PLN03230 106 QIAELEERYDQVRRELY 122 (431)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66667666665555443
No 139
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=27.61 E-value=2.2e+02 Score=20.50 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+++++|+.++-..-... .. ..-..++.++++.+.++...|+..-..|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~--~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~~ 108 (126)
T cd04783 57 GFTLDEIAELLELDDGT--DC-SEARELAEQKLAEVDEKIADLQRMRASLQELVS 108 (126)
T ss_pred CCCHHHHHHHHhcccCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777655432211 01 122355666666677766666666666665554
No 140
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=27.26 E-value=78 Score=18.91 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 141 RKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 141 RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
+.+..+.-.|..+..+...|..||..|+.++
T Consensus 14 K~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 14 KRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------HHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4455667778888888888999999888764
No 141
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=27.13 E-value=4.6e+02 Score=23.51 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=30.5
Q ss_pred cchhhhhhhcccccccccccccccchHHHHHHHhhhHhHHHHHHHHHhhhc
Q 028911 62 INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLL 112 (202)
Q Consensus 62 ~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~le~~~r~l~ 112 (202)
++.+++.|.......... ....-.+++..++..++.+++..+..++.+.
T Consensus 140 ~n~l~~~yi~~~~~~~~~--~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQ--DSDSAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHhhcccchh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666687754322111 1123456788888888888888887776543
No 142
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.96 E-value=3.1e+02 Score=21.52 Aligned_cols=15 Identities=27% Similarity=-0.035 Sum_probs=8.4
Q ss_pred cCcceeeeeecCCCC
Q 028911 39 CDAEVALIIFSPRGK 53 (202)
Q Consensus 39 Cda~valivfs~~gk 53 (202)
|=|+.+-|+|-..||
T Consensus 48 ~La~~Gki~~K~YGK 62 (201)
T KOG4603|consen 48 QLAQQGKIKEKMYGK 62 (201)
T ss_pred HHHHcCchhHHhccc
Confidence 555555565555554
No 143
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=26.86 E-value=5.3e+02 Score=24.08 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHHHhhh--HhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028911 89 HAKEETSNM--MTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRA 140 (202)
Q Consensus 89 ~l~~e~~kL--~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~ 140 (202)
.|.+.+..| +.+++.++.....+...++.+ +.++.+....++.....++.
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~--p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKN--PLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHHHH
Confidence 466666666 556666666666666655543 34555555555544444433
No 144
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=26.20 E-value=52 Score=27.19 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.2
Q ss_pred hhhhcccCcceeeeeecCCCCccccccc
Q 028911 33 FELSVLCDAEVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 33 ~ELsvLCda~valivfs~~gk~~~~~s~ 60 (202)
.+|.-.++++|+|||..+.|+++--+.+
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~ 160 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQV 160 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCC
Confidence 3455678999999999999999887665
No 145
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=26.20 E-value=1.6e+02 Score=22.84 Aligned_cols=14 Identities=29% Similarity=0.710 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 028911 124 LQQLENQLERSLSR 137 (202)
Q Consensus 124 L~~Le~~Le~~L~~ 137 (202)
|.++|..+..++.+
T Consensus 2 LeD~EsklN~AIER 15 (166)
T PF04880_consen 2 LEDFESKLNQAIER 15 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666553
No 146
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=25.83 E-value=1.4e+02 Score=19.52 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 121 IDELQQLENQLERSLSRIRARKNQL 145 (202)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~RK~~l 145 (202)
-.|+..+|+.|......+.+||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688999999999999998888654
No 147
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=25.79 E-value=4.5e+02 Score=22.99 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=45.2
Q ss_pred ccchhhhhhhccccccccccc-ccccchHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028911 61 SINKTIERYQKKTKDIGINSK-IVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIR 139 (202)
Q Consensus 61 s~~~il~RY~~~~~~~~~~~~-~~~~~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir 139 (202)
.++.+.+||............ ........+..+...|..-... +.+...+...|..+-.-+.
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~-----------------~~~~~~~~~~l~~a~~~l~ 70 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEK-----------------YREYKKAQEDLEDAKEMLA 70 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHh
Confidence 577888888876543322111 1112233344444444333322 2334444444444333333
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 140 ARK----NQLFREQIEKLKEKEKILIEENTKLR 168 (202)
Q Consensus 140 ~RK----~~ll~~~i~~l~~k~~~l~~en~~L~ 168 (202)
..+ ..+..++|..++.+...|+++-+.|-
T Consensus 71 ~~~D~em~ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 71 EEKDPEMREMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 25667777788777777777665553
No 148
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=25.75 E-value=2.5e+02 Score=20.27 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-......-. .......++..++..+.++...|+.....|...+.
T Consensus 57 G~sL~eI~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (127)
T TIGR02044 57 GFSLEECKELLNLWNDPNR-TSADVKARTLEKVAEIERKISELQSMRDQLEALAQ 110 (127)
T ss_pred CCCHHHHHHHHHhhccCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677887776543221100 01122245666677777777777777777766654
No 149
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=25.48 E-value=40 Score=22.18 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=19.7
Q ss_pred cCcceeeeeecCCCCccccccc-ccchhhhhh
Q 028911 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERY 69 (202)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~-s~~~il~RY 69 (202)
|+-..+++| +|..|...+| .+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 776666666 3778877776 777777654
No 150
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.29 E-value=5.6e+02 Score=23.89 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=4.8
Q ss_pred Cccccccc
Q 028911 53 KLYEFSSC 60 (202)
Q Consensus 53 k~~~~~s~ 60 (202)
.+|.|..|
T Consensus 106 ~pFqf~~~ 113 (546)
T PF07888_consen 106 TPFQFRAP 113 (546)
T ss_pred CCcccCCC
Confidence 36666655
No 151
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=24.97 E-value=41 Score=31.70 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.3
Q ss_pred hcccCcceeeeeecCCCCcccc
Q 028911 36 SVLCDAEVALIIFSPRGKLYEF 57 (202)
Q Consensus 36 svLCda~valivfs~~gk~~~~ 57 (202)
|||.|+-++||+|.++|.++.+
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 6999999999999999998875
No 152
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.85 E-value=3.9e+02 Score=21.84 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=5.8
Q ss_pred Ccccccccccch
Q 028911 53 KLYEFSSCSINK 64 (202)
Q Consensus 53 k~~~~~s~s~~~ 64 (202)
+...||..++..
T Consensus 9 ~~~~~C~~C~~~ 20 (302)
T PF10186_consen 9 RRRFYCANCVNN 20 (302)
T ss_pred CCCeECHHHHHH
Confidence 333455555444
No 153
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=24.83 E-value=52 Score=29.21 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=45.1
Q ss_pred eeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCccccccc-ccchhhhhhhcc
Q 028911 8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC-SINKTIERYQKK 72 (202)
Q Consensus 8 ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~-s~~~il~RY~~~ 72 (202)
|+++-+...-..||.+++.| ||+.+||..+-+.+|....-...|+++ -+.+.-.-|+..
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~~ 77 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQKF 77 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhhh
Confidence 67788888888999999999 999999999988888877667777775 344444444443
No 154
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.57 E-value=3.3e+02 Score=21.01 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 116 LEPCTIDELQQLENQLERSLSRIR--ARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 116 L~~Ls~~EL~~Le~~Le~~L~~Ir--~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
...+++++...+-+.+........ ..-.+-+..++..|+.+...|+.+|..|..++.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~ 135 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLS 135 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999998888887776422221 112334566777777777777777777766554
No 155
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=24.56 E-value=2.2e+02 Score=19.39 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 143 NQLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
...+..+++.+++....|.+||..|.-+....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555678999999999999999999776644
No 156
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=24.51 E-value=30 Score=20.48 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=15.2
Q ss_pred cCcce---eeeeecCCCCccccccc
Q 028911 39 CDAEV---ALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 39 Cda~v---alivfs~~gk~~~~~s~ 60 (202)
|+..| +-.-..=.|+.|.|+|+
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~ 30 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSE 30 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSH
T ss_pred CCCEEccCccEEEEECCEEEEEcCH
Confidence 67777 55556678999999996
No 157
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.44 E-value=4.5e+02 Score=22.44 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=7.1
Q ss_pred HHHHHHhhhHhHHHHH
Q 028911 89 HAKEETSNMMTKLEFL 104 (202)
Q Consensus 89 ~l~~e~~kL~~~~e~l 104 (202)
.+..++..+..+.+.+
T Consensus 47 ~~~~el~~le~Ee~~l 62 (314)
T PF04111_consen 47 ELEEELEKLEQEEEEL 62 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 158
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.39 E-value=7e+02 Score=24.66 Aligned_cols=79 Identities=24% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHhhhHhHHHHHHHHHhhhcC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 89 HAKEETSNMMTKLEFLEVAKRKLLG--DGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTK 166 (202)
Q Consensus 89 ~l~~e~~kL~~~~e~le~~~r~l~G--e~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~ 166 (202)
++..+..+|-++++-+-+.+-.-.+ +..+.+..+.+.++-.....--.-||+- ..+++.+++++..|..||..
T Consensus 615 ~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~l-----D~~~e~lkQ~~~~l~~e~ee 689 (970)
T KOG0946|consen 615 ALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIREL-----DYQIENLKQMEKELQVENEE 689 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHH
Confidence 4555666666666554443322111 2334455555555544444433333332 33445555555555555555
Q ss_pred HHHHHc
Q 028911 167 LREQCG 172 (202)
Q Consensus 167 L~~~~~ 172 (202)
|..++.
T Consensus 690 L~~~vq 695 (970)
T KOG0946|consen 690 LEEEVQ 695 (970)
T ss_pred HHHHHH
Confidence 554444
No 159
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=24.33 E-value=1.3e+02 Score=23.55 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=14.8
Q ss_pred hHHHHHHHhhhHhHHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAK 108 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~ 108 (202)
.+.|..++++++++.+.-+...
T Consensus 64 ~~el~~eiekvkke~Eekq~~k 85 (182)
T PF08432_consen 64 KKELEEEIEKVKKEYEEKQKWK 85 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhHHh
Confidence 4467778888877776655544
No 160
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.07 E-value=6.8e+02 Score=24.38 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 123 ELQQLENQLERSLSRIRARKNQLFREQIEK 152 (202)
Q Consensus 123 EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~ 152 (202)
++..+...|+..+...+.++.+++.+.-..
T Consensus 540 e~~~~~~~l~~~~~~l~~~~~~~~~~a~~e 569 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERERNKKLELEKE 569 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555433333
No 161
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.95 E-value=45 Score=27.02 Aligned_cols=18 Identities=39% Similarity=0.822 Sum_probs=15.3
Q ss_pred cCcceeeeeecCCCCccc
Q 028911 39 CDAEVALIIFSPRGKLYE 56 (202)
Q Consensus 39 Cda~valivfs~~gk~~~ 56 (202)
.|-|--+.||||.|++|.
T Consensus 7 agfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CCccceEEEECCCceEEe
Confidence 456778899999999996
No 162
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=23.94 E-value=2.5e+02 Score=21.94 Aligned_cols=9 Identities=11% Similarity=0.493 Sum_probs=5.9
Q ss_pred CCCCCHHHH
Q 028911 116 LEPCTIDEL 124 (202)
Q Consensus 116 L~~Ls~~EL 124 (202)
..+++++++
T Consensus 100 ~~~it~~~v 108 (170)
T PRK13923 100 ISDLTLEDV 108 (170)
T ss_pred cccCCHHHH
Confidence 456777776
No 163
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.76 E-value=3.8e+02 Score=21.36 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=6.7
Q ss_pred HHHHHhhhHhHHHHHH
Q 028911 90 AKEETSNMMTKLEFLE 105 (202)
Q Consensus 90 l~~e~~kL~~~~e~le 105 (202)
|..++.+|+..++.++
T Consensus 20 L~~en~kL~~~ve~~e 35 (193)
T PF14662_consen 20 LADENAKLQRSVETAE 35 (193)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 164
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=23.67 E-value=1.4e+02 Score=22.24 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=30.0
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDE 123 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~E 123 (202)
+..|+.++++.++.+..+...++++.|.|.++.-.-+
T Consensus 5 v~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~q 41 (134)
T PF04697_consen 5 VRTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPGQ 41 (134)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCccc
Confidence 4567888999999999999999999999976665443
No 165
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=23.48 E-value=3e+02 Score=21.14 Aligned_cols=47 Identities=11% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
+++++|+..+-..-... ...++.+++..+.++...|...-..|...+
T Consensus 58 G~sL~eI~~ll~~~~~~-------~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 58 GVSLEDIRSLLQQPGDD-------ATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CCCHHHHHHHHhcCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777655432222 223455555555555555555554544443
No 166
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=23.36 E-value=1e+02 Score=25.97 Aligned_cols=57 Identities=19% Similarity=0.439 Sum_probs=38.2
Q ss_pred CCccccccccccch---------hhhhhhhhcccCcceeeeeecCCCCc-------cccccc-----ccchhhhhhhc
Q 028911 15 TSRQVTFSKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGKL-------YEFSSC-----SINKTIERYQK 71 (202)
Q Consensus 15 ~~R~vtfsKRr~GL---------~KKA~ELsvLCda~valivfs~~gk~-------~~~~s~-----s~~~il~RY~~ 71 (202)
+.|-|.||+-|..| +-+.-.++|-||-|.-..+.-++|+- ..|+.. +++.||..-.+
T Consensus 180 ~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l~f~v~q~g~gfCHl~t~~Cfg~~~~gL~~LEs~l~~Rk~ 257 (359)
T KOG4311|consen 180 SGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSLIFLVTQDGPGFCHLGTETCFGTSVFGLYSLESILSKRKE 257 (359)
T ss_pred cCcceEEecccceeeeccccCcCceeeEEEeeccCccceEEEEecCCCcccccCcceeeeeechhhhhHHHHHHHhhh
Confidence 45677788888745 44456889999999877777787773 234432 57777554444
No 167
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=23.35 E-value=3.4e+02 Score=20.68 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=35.8
Q ss_pred cccccccchhhhhhhhhcccCcceeeeeecCCC----C---------ccccccc--ccchhhhhhhccccc
Q 028911 20 TFSKRRNGLLKKAFELSVLCDAEVALIIFSPRG----K---------LYEFSSC--SINKTIERYQKKTKD 75 (202)
Q Consensus 20 tfsKRr~GL~KKA~ELsvLCda~valivfs~~g----k---------~~~~~s~--s~~~il~RY~~~~~~ 75 (202)
.|-.=|.-|+.-..+.+-+.+.+| +|||...+ . -..|+.. +.+..|++|......
T Consensus 23 ~l~~aR~~Li~~L~~y~~~~~~~v-~VVFDa~~~~~~~~~~~~~~gi~Vvft~~~~tAD~~Ie~~v~~~~~ 92 (166)
T PF05991_consen 23 DLEAARERLIEMLSEYAQFSGYEV-IVVFDAYKVPGGSEEREEYGGIEVVFTKEGETADDYIERLVRELKN 92 (166)
T ss_pred CHHHHHHHHHHHHHHHhcccCCEE-EEEEeCCcCCCCCceeeeeCceEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345556677888888888999776 45676321 1 1124442 788999999876554
No 168
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.33 E-value=5.1e+02 Score=22.68 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 129 NQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 129 ~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++||..+.+.++++.++ .=+++.+.+.-+..++|+..|-..+.
T Consensus 130 q~LE~li~~~~EEn~~l-qlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCL-QLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 44555555555555333 44555555555555555555544443
No 169
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=23.24 E-value=1.7e+02 Score=17.10 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSLSRI 138 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~I 138 (202)
+++-.+.-.+.+.||.-+...
T Consensus 21 ~l~~~~vl~~Sq~LD~lI~~y 41 (45)
T PF09388_consen 21 GLTDPEVLELSQELDKLINEY 41 (45)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 677788888888888877643
No 170
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=23.05 E-value=5.1e+02 Score=24.76 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 123 ELQQLENQLERSLSRIRARKNQLF---REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 123 EL~~Le~~Le~~L~~Ir~RK~~ll---~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+|..|+++-+.-+..-+.+.+.+- .++++.||.-.+.|+.|.+.|.-...
T Consensus 5 kL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r 57 (654)
T PF09798_consen 5 KLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELR 57 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444433 46777788888888888888875544
No 171
>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.
Probab=23.03 E-value=42 Score=24.88 Aligned_cols=33 Identities=36% Similarity=0.701 Sum_probs=24.8
Q ss_pred cccccccchhhhh----hhhhcccCcce-eeeeec-CCC
Q 028911 20 TFSKRRNGLLKKA----FELSVLCDAEV-ALIIFS-PRG 52 (202)
Q Consensus 20 tfsKRr~GL~KKA----~ELsvLCda~v-alivfs-~~g 52 (202)
-|+-||.||+|-- .|+.-+||-+- .|-+|+ |+|
T Consensus 9 df~~RR~g~v~ALT~dve~Fy~~CDP~kenLCLYG~p~~ 47 (137)
T PF12165_consen 9 DFSGRRAGIVRALTTDVEEFYQQCDPEKENLCLYGHPDG 47 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccceEEecCCCC
Confidence 4889999998754 67888999776 555666 555
No 172
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=23.03 E-value=1.5e+02 Score=16.45 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 123 ELQQLENQLERSLSRIRARKNQLFREQIEKLKE 155 (202)
Q Consensus 123 EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~ 155 (202)
.+..|+..+..+...-+=-+-..+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 345566666666665555555555666655554
No 173
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.92 E-value=3.2e+02 Score=20.28 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
-.+.+++.+-.-.+..+++..+.- +.-..+|..|+++...+...|..|.+++
T Consensus 80 a~~~e~qsli~~yE~~~~kLe~e~-~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 80 AEIQEQQSLIKTYEIVVKKLEAEL-RAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 346788888777777777765544 3346789999999999999999987753
No 174
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.75 E-value=2.4e+02 Score=20.17 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 146 FREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 146 l~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+.+++..|+++...|..||..|++-.+
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888899988887764
No 175
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=22.65 E-value=40 Score=28.56 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=13.2
Q ss_pred hcccCcceeeeeecCC
Q 028911 36 SVLCDAEVALIIFSPR 51 (202)
Q Consensus 36 svLCda~valivfs~~ 51 (202)
.-+||+||||+||--.
T Consensus 183 ~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKG 198 (334)
T ss_pred CccccceEEeeehhhh
Confidence 4579999999999753
No 176
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=22.65 E-value=11 Score=23.35 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=21.3
Q ss_pred eeeeeecCCCCcccccccccchhhhhhhccccc
Q 028911 43 VALIIFSPRGKLYEFSSCSINKTIERYQKKTKD 75 (202)
Q Consensus 43 valivfs~~gk~~~~~s~s~~~il~RY~~~~~~ 75 (202)
|++|||.| +|+++.+. ++-.-+..|++....
T Consensus 14 i~llvFGp-~KLP~l~r-~lG~~i~~Fk~~~~~ 44 (51)
T PRK01470 14 IIFVLFGA-GKLPQVMS-DLAKGLKAFKDGMKD 44 (51)
T ss_pred HHHHhcCc-hHhHHHHH-HHHHHHHHHHHHhcc
Confidence 78999998 58887655 355566677765443
No 177
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=22.54 E-value=2.7e+02 Score=19.17 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLE 132 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le 132 (202)
+++++++..+-....
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 688888888776553
No 178
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=22.49 E-value=2.1e+02 Score=18.05 Aligned_cols=43 Identities=28% Similarity=0.283 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++.-..|+..++.-......| . .+-+....|+++|..|+.-+.
T Consensus 15 ~~~W~~L~~~l~rY~~vL~~R--------~-~l~~e~~~L~~qN~eLr~lLk 57 (60)
T PF14775_consen 15 IRLWDALENFLKRYNKVLLDR--------A-ALIQEKESLEQQNEELRSLLK 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444433333 2 233344778889999987664
No 179
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=22.36 E-value=2.9e+02 Score=20.63 Aligned_cols=52 Identities=17% Similarity=0.198 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-..-+... -..-..++.+++..+.++...|+.....|...+.
T Consensus 64 G~sL~eI~~ll~~~~~~~---~~~~~~ll~~k~~~l~~~i~~L~~~~~~L~~~~~ 115 (144)
T PRK13752 64 GFSLDEIAELLRLEDGTH---CEEASSLAEHKLKDVREKMADLARMEAVLSELVC 115 (144)
T ss_pred CCCHHHHHHHHhccCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777776553221110 0112356666777777777777776666666554
No 180
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=22.34 E-value=29 Score=30.30 Aligned_cols=44 Identities=34% Similarity=0.415 Sum_probs=0.0
Q ss_pred cccccccchhhhhhhhhcccCcceee-eeecCCCCcccccccccc
Q 028911 20 TFSKRRNGLLKKAFELSVLCDAEVAL-IIFSPRGKLYEFSSCSIN 63 (202)
Q Consensus 20 tfsKRr~GL~KKA~ELsvLCda~val-ivfs~~gk~~~~~s~s~~ 63 (202)
+-+.=-.|++|=+.=..-+|+|.-+| =+.+..||+-+|+|+++.
T Consensus 48 ~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 48 KMSRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp ---------------------------------------------
T ss_pred hhhhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 33334457777777778899999999 788889999999999876
No 181
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=22.27 E-value=1.1e+02 Score=25.50 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=23.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 028911 113 GDGLEPCTIDELQQLENQLERSLSRIR 139 (202)
Q Consensus 113 Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir 139 (202)
=+.=-+|+++|+..+|......|..+|
T Consensus 231 ~DeW~gltmedIR~~E~~t~~~l~~~~ 257 (258)
T cd08888 231 LDKWHGLTMDDIRRMEDETKKELDEMR 257 (258)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 355578999999999999999999887
No 182
>PLN03128 DNA topoisomerase 2; Provisional
Probab=22.15 E-value=4.5e+02 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=20.8
Q ss_pred eeeeecCCCCcccccccccchhhhhhhcc
Q 028911 44 ALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (202)
Q Consensus 44 alivfs~~gk~~~~~s~s~~~il~RY~~~ 72 (202)
-+++|.+.|++..|.+ +.+||..|..+
T Consensus 961 nm~l~d~~~~i~ky~~--~~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKYDS--PEDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCCCC--HHHHHHHHHHH
Confidence 5778889998888854 58888888664
No 183
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=22.09 E-value=7.4e+02 Score=24.09 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 028911 140 ARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQP 175 (202)
Q Consensus 140 ~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~~ 175 (202)
.|++++|..+|..|+++....+.-|..|..++....
T Consensus 604 arrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TT 639 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETT 639 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 467778888888888887777777777777666544
No 184
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=22.06 E-value=45 Score=28.94 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=21.2
Q ss_pred hhhhhhcccCcceeeeeecC--CCCccccc
Q 028911 31 KAFELSVLCDAEVALIIFSP--RGKLYEFS 58 (202)
Q Consensus 31 KA~ELsvLCda~valivfs~--~gk~~~~~ 58 (202)
.+-.-++||||.++++.|+. +|-.|.|.
T Consensus 270 ~~v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 270 VAVARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred cceeeeeeechhheeeeeeccCCCcccccc
Confidence 45567899999999999997 34455554
No 185
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=22.01 E-value=4e+02 Score=22.36 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCCCCCH--HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 114 DGLEPCTI--DELQQLEN-QLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 114 e~L~~Ls~--~EL~~Le~-~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
+.|..+.+ +|+..+|+ .+-+....-+.|| ...++|..|++++..+.-+|..|-..+
T Consensus 192 ~pispid~e~qe~~kleRkrlrnreaa~Kcr~--rkLdrisrLEdkv~~lk~~n~~L~~~l 250 (279)
T KOG0837|consen 192 EPISPIDMEDQEKIKLERKRLRNREAASKCRK--RKLDRISRLEDKVKTLKIYNRDLASEL 250 (279)
T ss_pred CCCCcccchhHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 34444443 35555555 3444444444444 446888999988887766666555443
No 186
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.97 E-value=2.4e+02 Score=24.56 Aligned_cols=46 Identities=30% Similarity=0.333 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 115 GLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 115 ~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
.|++.|++|+-.|.+. ++-|..+++.|+.++..| |+..|+..+.+.
T Consensus 25 ~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL--E~e~l~s~V~E~ 70 (420)
T PF07407_consen 25 ELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL--ENEMLRSHVCED 70 (420)
T ss_pred cccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH--HHHhhhhhhhhH
No 187
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=21.82 E-value=2.2e+02 Score=23.81 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Q 028911 151 EKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 151 ~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
++++.++..|..||..|+.+++.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543
No 188
>PRK11519 tyrosine kinase; Provisional
Probab=21.62 E-value=3.5e+02 Score=25.85 Aligned_cols=49 Identities=8% Similarity=0.123 Sum_probs=30.4
Q ss_pred cchhhhhhhcccccccccccccccchHHHHHHHhhhHhHHHHHHHHHhhhc
Q 028911 62 INKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLL 112 (202)
Q Consensus 62 ~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~le~~~r~l~ 112 (202)
+..+.+.|....-.... .......+++.+++..++.+++..+..+..+.
T Consensus 246 aN~l~~~Yi~~~~~~k~--~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 246 LNSITRNYLEQNIERKS--EEASKSLAFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667665433211 11123467888889999988888887765543
No 189
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.52 E-value=4e+02 Score=20.87 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028911 143 NQLFREQIEKLKEKEKIL 160 (202)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l 160 (202)
.....++|+.|++....|
T Consensus 165 ~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 165 EKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555554444444
No 190
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=21.41 E-value=33 Score=22.03 Aligned_cols=31 Identities=35% Similarity=0.563 Sum_probs=21.8
Q ss_pred cccccchhhhhhhhhcccCc-ceeeeeecCCCCc
Q 028911 22 SKRRNGLLKKAFELSVLCDA-EVALIIFSPRGKL 54 (202)
Q Consensus 22 sKRr~GL~KKA~ELsvLCda-~valivfs~~gk~ 54 (202)
..||.|.+.+ |.|+-+|. +=.+-|++..|++
T Consensus 23 ~~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 23 NLRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HHhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 4688886655 88888874 5588888888864
No 191
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.13 E-value=37 Score=27.28 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=12.7
Q ss_pred eeeeecCCCCccc--ccc
Q 028911 44 ALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 44 alivfs~~gk~~~--~~s 59 (202)
.+-+|||+|++|+ |+.
T Consensus 4 ~~t~fsp~Grl~QveyA~ 21 (227)
T cd03750 4 SLTTFSPSGKLVQIEYAL 21 (227)
T ss_pred CCceECCCCeEhHHHHHH
Confidence 4568999999995 765
No 192
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=20.97 E-value=4.6e+02 Score=25.15 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=19.1
Q ss_pred chHHHHHHHhhhHhHHHHHHHHHhhh
Q 028911 86 HSQHAKEETSNMMTKLEFLEVAKRKL 111 (202)
Q Consensus 86 ~~~~l~~e~~kL~~~~e~le~~~r~l 111 (202)
..+++.+++..++.+++..+..+..+
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888887766443
No 193
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.88 E-value=7.7e+02 Score=25.04 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 145 LFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 145 ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
-|..+-+..+.|...|++||+.|.-+-+..
T Consensus 312 dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 312 DMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777888888888888887655433
No 194
>PRK11637 AmiB activator; Provisional
Probab=20.87 E-value=5.9e+02 Score=22.51 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028911 146 FREQIEKLKEKEKILIEENT 165 (202)
Q Consensus 146 l~~~i~~l~~k~~~l~~en~ 165 (202)
+..+|..++.+...+.+.-.
T Consensus 108 l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 108 LNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666555544333
No 195
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=20.85 E-value=3e+02 Score=19.03 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
+++++|+..+-..-. -..++.++.+.+.++...|++.-..|...+
T Consensus 57 G~~l~ei~~~~~~~~---------~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 101 (102)
T cd04775 57 GLPLEEIAGCLAQPH---------VQAILEERLQSLNREIQRLRQQQQVLAAIL 101 (102)
T ss_pred CCCHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577777776543211 135666777777777777766666665543
No 196
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=20.70 E-value=44 Score=17.74 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=16.1
Q ss_pred hcccCcceeeeeecCCCCccccccc
Q 028911 36 SVLCDAEVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 36 svLCda~valivfs~~gk~~~~~s~ 60 (202)
+|-|+..-.+++.+ +|++|.|++.
T Consensus 3 ~ia~G~~ht~al~~-~g~v~~wG~n 26 (30)
T PF13540_consen 3 QIACGGYHTCALTS-DGEVYCWGDN 26 (30)
T ss_dssp EEEEESSEEEEEE--TTEEEEEE--
T ss_pred EEEecCCEEEEEEc-CCCEEEEcCC
Confidence 45677777777775 5899999875
No 197
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.57 E-value=2.8e+02 Score=18.72 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+--.+.|..|+-.+..|.+.|..|...+.
T Consensus 14 qqAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 14 QQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777766544
No 198
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.56 E-value=3.6e+02 Score=19.90 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLER---SLSRIRARKNQLFREQIEKLKEKEKILIEENTKL 167 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~---~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L 167 (202)
++|++|+..+-...+. ....+. .+.+.+..++..+..+...|.+-...|
T Consensus 56 G~sL~eI~~~l~~~~~~~~~~~~~~-~~~~~l~~~i~~Le~~l~~L~~~~~~l 107 (134)
T cd04779 56 RLSLAEIKDQLEEVQRSDKEQREVA-QEVQLVCDQIDGLEHRLKQLKPIASQT 107 (134)
T ss_pred CCCHHHHHHHHHhhccccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665555443332 122232 233456666666666666665544444
No 199
>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.
Probab=20.54 E-value=52 Score=19.89 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=17.0
Q ss_pred hhhhhhhhhcccCcceeeeeec
Q 028911 28 LLKKAFELSVLCDAEVALIIFS 49 (202)
Q Consensus 28 L~KKA~ELsvLCda~valivfs 49 (202)
|.+-+..-+=||+++..|.+|-
T Consensus 2 L~~Rs~~kCELC~a~~~L~vy~ 23 (47)
T smart00782 2 LLARCESKCELCGSDSPLVVYA 23 (47)
T ss_pred hhHHcCCcccCcCCCCCceEEe
Confidence 3445556678999999999987
No 200
>PTZ00370 STEVOR; Provisional
Probab=20.47 E-value=1.1e+02 Score=26.06 Aligned_cols=42 Identities=19% Similarity=0.429 Sum_probs=26.4
Q ss_pred eeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccc-cccchhhhhhhc
Q 028911 8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS-CSINKTIERYQK 71 (202)
Q Consensus 8 ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s-~s~~~il~RY~~ 71 (202)
+-.|.|.+.|. |-+- -.||..|. |+| .|-+ |.|++|++.|..
T Consensus 26 ~~li~n~t~~~-t~~s------------R~L~Ecel----~~p-----~YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 26 VSLIQNNTQRT-TIKS------------RLLAQTQN----HNP-----HYHNDPELKEIIDKMNE 68 (296)
T ss_pred cccccCCCccc-ccce------------eehhhhhc----CCC-----CCCCcHHHHHHHHHHhH
Confidence 34567777655 2222 25777775 445 2444 699999999865
No 201
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=20.42 E-value=77 Score=26.23 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.4
Q ss_pred hhhcccCcceeeeeecCCCCccccccc
Q 028911 34 ELSVLCDAEVALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 34 ELsvLCda~valivfs~~gk~~~~~s~ 60 (202)
+|.-.|+++|+|||..+.|+++-.+..
T Consensus 135 ~l~~~~g~~v~VIItDt~gr~~R~G~t 161 (245)
T PRK13293 135 GLEELTGKKVGVIITDTNGRPFRKGQR 161 (245)
T ss_pred HHHHHHCCCEEEEEEcCCCcccccCCc
Confidence 455678999999999999998877664
No 202
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.26 E-value=7.1e+02 Score=23.24 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028911 150 IEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 150 i~~l~~k~~~l~~en~~L~~~~ 171 (202)
...++.++..|.++...|..+.
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555554444443
No 203
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=20.17 E-value=3e+02 Score=20.12 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
.++.+++..+..+...|++.-..|...+.
T Consensus 81 ~~l~~k~~~i~~~i~~L~~~~~~L~~~i~ 109 (131)
T cd04786 81 AALERKVADIEALEARLAQNKAQLLVLID 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666665554
No 204
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=20.10 E-value=4.3e+02 Score=25.43 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHhhhHhHHHHHHHHHhhhcCCCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 028911 90 AKEETSNMMTKLEFLEVAKRKLLGDGLEPC--------TIDELQQLENQLERSLSRIRARKNQLFREQIEK--------- 152 (202)
Q Consensus 90 l~~e~~kL~~~~e~le~~~r~l~Ge~L~~L--------s~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~--------- 152 (202)
++.++..++.+++.|+..+-.+.-..-.+. -+.|.+..-..||.-|..-|.+|.+-=..-...
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~ 537 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ 537 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc
Q ss_pred -----HHHHHHHHHHHHHHHHHHH
Q 028911 153 -----LKEKEKILIEENTKLREQC 171 (202)
Q Consensus 153 -----l~~k~~~l~~en~~L~~~~ 171 (202)
++.+.+.|+.|-..|+..+
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~el 561 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRREL 561 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Done!