Query 028911
Match_columns 202
No_of_seqs 185 out of 1405
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:48:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.2E-41 7.4E-46 227.8 0.1 74 2-75 1-74 (77)
2 3p57_A Myocyte-specific enhanc 100.0 4.2E-41 1.4E-45 231.8 0.1 77 2-78 1-77 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.9E-39 1.3E-43 225.6 -0.1 71 1-71 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 5E-39 1.7E-43 222.3 -0.2 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 2.5E-38 8.6E-43 222.9 0.1 69 1-69 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 91.1 1.7 5.8E-05 28.6 7.8 43 119-166 3-45 (81)
7 2w6a_A ARF GTPase-activating p 88.1 3.1 0.00011 25.5 8.7 53 117-169 8-62 (63)
8 1dip_A Delta-sleep-inducing pe 84.3 1.8 6.1E-05 27.8 4.5 30 144-173 18-47 (78)
9 2dgc_A Protein (GCN4); basic d 82.7 4.4 0.00015 25.2 5.9 36 134-173 20-55 (63)
10 1dh3_A Transcription factor CR 79.9 6.8 0.00023 23.6 5.9 33 137-173 15-47 (55)
11 2wt7_A Proto-oncogene protein 75.5 10 0.00034 23.4 5.9 33 136-172 15-47 (63)
12 2yy0_A C-MYC-binding protein; 74.9 7.7 0.00026 23.3 5.0 28 145-172 23-50 (53)
13 2oqq_A Transcription factor HY 74.4 9.6 0.00033 21.6 5.5 27 146-172 15-41 (42)
14 1t2k_D Cyclic-AMP-dependent tr 73.8 12 0.0004 22.8 5.9 33 136-172 14-46 (61)
15 1ci6_A Transcription factor AT 71.7 14 0.00048 22.8 5.9 26 147-172 22-47 (63)
16 1jnm_A Proto-oncogene C-JUN; B 71.6 14 0.00049 22.6 5.9 33 136-172 14-46 (62)
17 3nmd_A CGMP dependent protein 70.0 19 0.00064 23.0 7.2 50 116-172 15-64 (72)
18 1j1d_C Troponin I, TNI; THIN f 69.8 28 0.00095 25.0 10.3 34 113-146 52-85 (133)
19 3s9g_A Protein hexim1; cyclin 68.0 21 0.0007 24.2 6.3 26 147-172 64-89 (104)
20 2dfs_A Myosin-5A; myosin-V, in 65.7 45 0.0015 32.2 10.6 24 151-174 1019-1042(1080)
21 1j1e_C Troponin I, TNI; THIN f 62.0 49 0.0017 25.0 9.4 48 113-160 52-105 (180)
22 1gd2_E Transcription factor PA 61.5 24 0.00084 22.3 5.5 10 135-144 20-29 (70)
23 1a93_B MAX protein, coiled coi 59.1 18 0.00063 19.5 3.9 24 141-164 7-30 (34)
24 3gp4_A Transcriptional regulat 58.6 36 0.0012 24.3 6.8 54 118-172 59-112 (142)
25 2oxj_A Hybrid alpha/beta pepti 58.1 12 0.00042 20.1 3.0 21 151-171 4-24 (34)
26 1j1d_B Troponin T, TNT; THIN f 57.1 43 0.0015 23.0 6.6 32 115-146 38-69 (106)
27 1ytz_T Troponin T; muscle, THI 55.8 47 0.0016 22.8 7.6 34 113-146 36-69 (107)
28 3m48_A General control protein 53.5 13 0.00046 19.9 2.7 20 152-171 4-23 (33)
29 2rpa_A Katanin P60 ATPase-cont 49.9 5 0.00017 26.2 0.8 35 29-74 16-50 (78)
30 3gpv_A Transcriptional regulat 49.8 59 0.002 23.2 6.8 55 118-173 73-127 (148)
31 3c3f_A Alpha/beta peptide with 48.2 22 0.00076 19.0 3.0 17 153-169 6-22 (34)
32 1go4_E MAD1 (mitotic arrest de 47.2 7.6 0.00026 26.5 1.4 22 87-108 21-42 (100)
33 2zqm_A Prefoldin beta subunit 47.1 63 0.0022 21.8 7.5 39 133-172 70-108 (117)
34 1gk7_A Vimentin; intermediate 45.8 37 0.0013 18.8 5.1 27 147-173 12-38 (39)
35 1m2d_A [2Fe-2S] ferredoxin; th 43.9 10 0.00035 25.9 1.7 32 39-71 59-91 (110)
36 3c3g_A Alpha/beta peptide with 41.8 40 0.0014 17.9 3.6 13 156-168 8-20 (33)
37 1t6f_A Geminin; coiled-coil, c 41.2 43 0.0015 18.2 4.5 26 143-168 9-34 (37)
38 3hnw_A Uncharacterized protein 39.3 1E+02 0.0035 22.0 8.6 68 91-172 67-134 (138)
39 1hjb_A Ccaat/enhancer binding 38.5 83 0.0028 20.7 5.7 26 147-172 49-74 (87)
40 1uii_A Geminin; human, DNA rep 38.1 68 0.0023 21.0 4.9 27 144-170 49-75 (83)
41 3oja_B Anopheles plasmodium-re 37.9 2E+02 0.0069 24.9 11.2 26 147-172 550-575 (597)
42 2oa5_A Hypothetical protein BQ 37.4 99 0.0034 21.3 7.3 58 85-142 8-67 (110)
43 2ky6_A Mediator of RNA polymer 37.3 16 0.00056 27.1 2.0 36 36-71 116-159 (166)
44 1go4_E MAD1 (mitotic arrest de 37.1 44 0.0015 22.7 4.0 24 149-172 13-36 (100)
45 3nrf_A APAG protein; structura 36.7 8 0.00027 26.6 0.2 50 11-67 21-70 (106)
46 1p9i_A Cortexillin I/GCN4 hybr 36.1 32 0.0011 17.5 2.4 16 157-172 8-23 (31)
47 3hnw_A Uncharacterized protein 35.8 1.2E+02 0.004 21.6 11.1 18 90-107 73-90 (138)
48 1t2k_D Cyclic-AMP-dependent tr 35.8 72 0.0025 19.1 5.5 28 144-171 32-59 (61)
49 4gfh_A DNA topoisomerase 2; to 35.8 88 0.003 30.5 7.3 43 26-72 958-1000(1177)
50 2zxx_A Geminin; coiled-coil, c 35.7 44 0.0015 21.7 3.6 26 144-169 37-62 (79)
51 1wlq_A Geminin; coiled-coil; 2 35.1 58 0.002 21.3 4.1 25 145-169 42-66 (83)
52 2v71_A Nuclear distribution pr 34.7 1.5E+02 0.005 22.5 12.2 23 150-172 90-112 (189)
53 2l5g_B Putative uncharacterize 34.1 65 0.0022 18.2 5.4 37 119-163 2-38 (42)
54 1gu4_A CAAT/enhancer binding p 34.0 93 0.0032 20.0 5.9 21 152-172 40-60 (78)
55 2l16_A SEC-independent protein 33.9 1.4 4.7E-05 28.9 -3.9 30 43-74 16-45 (78)
56 2l5g_A GPS2 protein, G protein 33.6 62 0.0021 17.7 3.6 19 148-166 15-33 (38)
57 1deb_A APC protein, adenomatou 33.6 51 0.0018 19.4 3.3 21 152-172 7-27 (54)
58 1nkp_B MAX protein, MYC proto- 33.5 93 0.0032 19.8 5.3 29 146-174 52-80 (83)
59 1g6u_A Domain swapped dimer; d 33.5 65 0.0022 17.9 4.8 20 117-136 15-34 (48)
60 3na7_A HP0958; flagellar bioge 33.3 1.7E+02 0.0058 22.8 7.6 49 120-168 88-138 (256)
61 3q4f_C DNA repair protein XRCC 33.2 51 0.0018 24.8 4.1 23 148-170 161-183 (186)
62 3s4r_A Vimentin; alpha-helix, 33.2 1.1E+02 0.0036 20.3 11.2 71 86-172 10-80 (93)
63 2oa5_A Hypothetical protein BQ 33.1 33 0.0011 23.7 2.8 24 150-173 10-33 (110)
64 3na7_A HP0958; flagellar bioge 32.9 1.7E+02 0.0059 22.7 8.7 8 128-135 110-117 (256)
65 1m1j_B Fibrinogen beta chain; 32.0 1.1E+02 0.0038 26.5 6.7 134 26-171 54-191 (464)
66 1ci6_A Transcription factor AT 31.2 91 0.0031 19.0 5.5 27 145-171 34-60 (63)
67 3ghg_A Fibrinogen alpha chain; 31.2 2.8E+02 0.0095 24.5 9.6 39 130-169 114-152 (562)
68 1uo4_A General control protein 30.7 56 0.0019 17.5 2.9 16 154-169 7-22 (34)
69 3aei_A Prefoldin beta subunit 30.6 1.1E+02 0.0038 19.7 5.3 26 144-169 71-96 (99)
70 3uux_B Mitochondrial division 30.4 2E+02 0.0068 22.6 8.4 31 144-174 194-224 (242)
71 4a17_T RPL24, 60S ribosomal pr 30.0 14 0.00047 27.3 0.6 45 34-79 6-54 (158)
72 3m9b_A Proteasome-associated A 29.7 1E+02 0.0035 24.5 5.6 42 123-169 55-96 (251)
73 2hy6_A General control protein 29.7 59 0.002 17.4 2.9 12 156-167 9-20 (34)
74 3s4r_A Vimentin; alpha-helix, 28.7 1.1E+02 0.0037 20.2 4.9 35 123-157 10-46 (93)
75 2zvv_Y Cyclin-dependent kinase 28.5 14 0.00046 18.4 0.2 12 15-26 15-26 (26)
76 2aze_A Transcription factor DP 28.2 1.8E+02 0.006 21.3 7.7 49 120-170 3-51 (155)
77 1ybx_A Conserved hypothetical 27.9 1.7E+02 0.0058 21.0 7.1 67 87-153 43-132 (143)
78 1fxk_A Prefoldin; archaeal pro 27.5 1.3E+02 0.0045 19.7 8.1 26 147-172 78-103 (107)
79 3w03_C DNA repair protein XRCC 27.5 76 0.0026 24.0 4.3 25 146-170 150-174 (184)
80 1zps_A PRA-CH, phosphoribosyl- 27.5 15 0.00052 26.5 0.4 36 18-53 56-100 (138)
81 1z56_A Ligase interacting fact 27.2 61 0.0021 25.6 3.8 31 10-40 118-148 (246)
82 3ghg_B Fibrinogen beta chain; 27.1 3.1E+02 0.011 23.7 8.7 121 39-172 60-194 (461)
83 3tnu_A Keratin, type I cytoske 27.0 1.6E+02 0.0055 20.5 9.5 16 90-105 50-65 (131)
84 3h4p_A Proteasome subunit alph 26.9 14 0.00049 29.4 0.2 20 40-59 11-32 (264)
85 1am9_A Srebp-1A, protein (ster 26.8 92 0.0032 19.9 4.2 25 148-172 50-74 (82)
86 3nzj_F Proteasome component C1 26.6 13 0.00046 30.1 -0.1 20 37-56 4-23 (288)
87 3tnu_B Keratin, type II cytosk 26.4 1.6E+02 0.0056 20.4 9.9 12 93-104 37-48 (129)
88 1ryp_E 20S proteasome; multica 25.0 14 0.00049 28.7 -0.2 16 44-59 3-20 (242)
89 3hvz_A Uncharacterized protein 24.2 33 0.0011 22.0 1.5 24 44-67 7-31 (78)
90 1ytz_I Troponin I; muscle, THI 24.2 2.3E+02 0.0078 21.3 6.9 33 113-146 50-82 (182)
91 1ryp_D 20S proteasome; multica 24.1 17 0.00057 28.3 0.1 17 42-58 3-21 (241)
92 2zkr_u 60S ribosomal protein L 23.6 47 0.0016 24.5 2.4 46 34-81 4-54 (157)
93 2zhg_A Redox-sensitive transcr 23.4 99 0.0034 22.2 4.2 55 118-172 67-121 (154)
94 3mq7_A Bone marrow stromal ant 23.2 1.9E+02 0.0066 20.1 8.0 45 127-172 58-102 (121)
95 1iru_G 20S proteasome; cell cy 23.2 18 0.00061 28.5 0.1 21 39-59 5-27 (254)
96 1ryp_B 20S proteasome; multica 23.2 18 0.00062 28.3 0.1 19 41-59 5-25 (250)
97 2wvr_A Geminin; DNA replicatio 22.7 1.3E+02 0.0046 23.0 4.9 26 145-170 119-144 (209)
98 1iru_B 20S proteasome; cell cy 22.5 19 0.00064 27.8 0.1 19 41-59 5-25 (233)
99 2ygg_A Sodium/hydrogen exchang 22.3 1.3E+02 0.0043 19.0 3.9 23 119-141 4-26 (70)
100 1q06_A Transcriptional regulat 21.8 2E+02 0.0067 20.0 5.5 54 118-172 57-110 (135)
101 1iru_D 20S proteasome; cell cy 21.7 20 0.00069 28.0 0.1 18 42-59 4-23 (248)
102 1q08_A Zn(II)-responsive regul 21.4 1.7E+02 0.0058 18.7 7.6 55 118-173 16-71 (99)
103 1e52_A Excinuclease ABC subuni 20.8 1.1E+02 0.0039 18.7 3.4 42 115-156 13-58 (63)
104 2xus_A Breast cancer metastasi 20.8 1.4E+02 0.0047 17.4 5.6 33 121-160 12-44 (49)
105 1nkp_A C-MYC, MYC proto-oncoge 20.2 1.8E+02 0.0063 18.8 4.7 23 151-173 62-84 (88)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.2e-41 Score=227.83 Aligned_cols=74 Identities=47% Similarity=0.805 Sum_probs=70.3
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhccccc
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKD 75 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~~ 75 (202)
||+||+|++|+|+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+|+.||+||++.+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987653
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=4.2e-41 Score=231.77 Aligned_cols=77 Identities=45% Similarity=0.753 Sum_probs=74.0
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcccccccc
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGI 78 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~~~~~ 78 (202)
||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+||+++++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~ 77 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES 77 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998775544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=3.9e-39 Score=225.59 Aligned_cols=71 Identities=44% Similarity=0.657 Sum_probs=69.5
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhc
Q 028911 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK 71 (202)
Q Consensus 1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~ 71 (202)
|||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|+||++..|+++|..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999854
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=5e-39 Score=222.28 Aligned_cols=70 Identities=37% Similarity=0.562 Sum_probs=68.5
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhh
Q 028911 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQ 70 (202)
Q Consensus 1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~ 70 (202)
|||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=2.5e-38 Score=222.87 Aligned_cols=69 Identities=38% Similarity=0.570 Sum_probs=67.8
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhh
Q 028911 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERY 69 (202)
Q Consensus 1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY 69 (202)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999983
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.06 E-value=1.7 Score=28.62 Aligned_cols=43 Identities=28% Similarity=0.523 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTK 166 (202)
Q Consensus 119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~ 166 (202)
+|++=|.+||..+..++..| .++.-+|+.|+.+-..|.++|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999988 56667777777776665554444
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=88.14 E-value=3.1 Score=25.51 Aligned_cols=53 Identities=25% Similarity=0.411 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 117 EPCTIDELQQLENQLERSLSRIRA--RKNQLFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 117 ~~Ls~~EL~~Le~~Le~~L~~Ir~--RK~~ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
+..+++|..++...|-.+=.+|.. +-+.-+.+++..++++.+.|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 457888988888888777666643 34455678899999999999999999874
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=84.30 E-value=1.8 Score=27.82 Aligned_cols=30 Identities=37% Similarity=0.471 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
+.|.++|.+|..+...|+.||+.|+.-...
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~asp 47 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLASP 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 467899999999999999999999876553
No 9
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=82.69 E-value=4.4 Score=25.21 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 134 SLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 134 ~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
+-.+.|.|| .+.+..|..++..|..+|..|...+..
T Consensus 20 AArrsR~RK----~~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 20 AARRSRARK----LQRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666 566788888889999999998887653
No 10
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=79.90 E-value=6.8 Score=23.60 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 137 RIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 137 ~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
.-|.||. ..++.|..++..|..+|..|..++..
T Consensus 15 rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 15 ESRRKKK----EYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455563 45678888999999999999988764
No 11
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=75.46 E-value=10 Score=23.42 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 136 SRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 136 ~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
.+-|.|| .+.++.|..++..|..+|..|...+.
T Consensus 15 ~rcR~rK----k~~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 15 AKCRNRR----RELTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 45567888888888888888887765
No 12
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=74.89 E-value=7.7 Score=23.25 Aligned_cols=28 Identities=36% Similarity=0.614 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 145 LFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 145 ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
.|..+...|+.|...|.+++..|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778889999999999999998876
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=74.40 E-value=9.6 Score=21.60 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 146 FREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 146 l~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+......|..++.-|+.||..|++.+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 455667788888999999999998764
No 14
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.81 E-value=12 Score=22.85 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 136 SRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 136 ~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
.+.|.||. +.++.|..++..|..+|..|..++.
T Consensus 14 ~k~R~rKk----~~~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 14 SRSRQKRK----VWVQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455553 3456677777777777777776654
No 15
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.73 E-value=14 Score=22.78 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 147 REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 147 ~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
.+.++.|..+...|..+|..|..++.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666554
No 16
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=71.57 E-value=14 Score=22.57 Aligned_cols=33 Identities=39% Similarity=0.528 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 136 SRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 136 ~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
.+-|.|| .+.+..|..++..|..+|..|..++.
T Consensus 14 ~k~R~rK----k~~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 14 SKSRKRK----LERIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 44567788888888888888887765
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.99 E-value=19 Score=23.03 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 116 LEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 116 L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+++++. +.+|+..|......||.+.. .|..|.+.......+...|+.++.
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 88999999999999987753 355666666666667777776664
No 18
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=69.82 E-value=28 Score=24.98 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=30.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (202)
Q Consensus 113 Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll 146 (202)
.-+++++|.++|+++-..|...+..+-+-|..+-
T Consensus 52 pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3579999999999999999999999999887764
No 19
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=67.98 E-value=21 Score=24.22 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 147 REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 147 ~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
..+|..|..++..|..||..|...-+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666667777665543
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=65.66 E-value=45 Score=32.20 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Q 028911 151 EKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 151 ~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
+.|+.++..|.+||..|+.++.+.
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999999888877644
No 21
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=62.00 E-value=49 Score=24.96 Aligned_cols=48 Identities=23% Similarity=0.237 Sum_probs=37.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 028911 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQLFR------EQIEKLKEKEKIL 160 (202)
Q Consensus 113 Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~------~~i~~l~~k~~~l 160 (202)
.-++++||.++|+++-..|...+..+-+-|..+-. -+|..|+.++..|
T Consensus 52 PLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 35889999999999999999999999988877643 2455555555554
No 22
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=61.50 E-value=24 Score=22.30 Aligned_cols=10 Identities=30% Similarity=0.421 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 028911 135 LSRIRARKNQ 144 (202)
Q Consensus 135 L~~Ir~RK~~ 144 (202)
-...|.||.+
T Consensus 20 QRafReRK~~ 29 (70)
T 1gd2_E 20 QRAFRKRKED 29 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444555543
No 23
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=59.07 E-value=18 Score=19.52 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 141 RKNQLFREQIEKLKEKEKILIEEN 164 (202)
Q Consensus 141 RK~~ll~~~i~~l~~k~~~l~~en 164 (202)
||+.-....|+.|+++...|.++-
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHH
Confidence 566666666666666655555543
No 24
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=58.64 E-value=36 Score=24.33 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++++..+-...+..-..+..+ ..++.+++..+.++...|+.....|..++.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888877665443322122222 245556666666666666655555555444
No 25
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=58.07 E-value=12 Score=20.08 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028911 151 EKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 151 ~~l~~k~~~l~~en~~L~~~~ 171 (202)
.+|..|+..|..+|..|...+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 334444444444444444433
No 26
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=57.08 E-value=43 Score=22.97 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 115 GLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (202)
Q Consensus 115 ~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll 146 (202)
++++||.++|+++-..|-..+..+-+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 78999999999999999999999999887764
No 27
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=55.76 E-value=47 Score=22.81 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=30.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (202)
Q Consensus 113 Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll 146 (202)
.-++++||.++|+++-..|...+..+-+-|..+-
T Consensus 36 pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 36 PLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3578999999999999999999999999887764
No 28
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=53.48 E-value=13 Score=19.85 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028911 152 KLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 152 ~l~~k~~~l~~en~~L~~~~ 171 (202)
+|..|+..|..+|..|...+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34455555555555555444
No 29
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=49.88 E-value=5 Score=26.16 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=28.9
Q ss_pred hhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcccc
Q 028911 29 LKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (202)
Q Consensus 29 ~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~ 74 (202)
+|+|+|.+.+++=|.|++.|.. +..-|+||.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHhcC
Confidence 5899999999999988887763 6778888888664
No 30
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=49.76 E-value=59 Score=23.24 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
++|++++..+-......-..+.. ...++.+++..+.++...|+.....|..++..
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888876644322112222 23466777777777777777777777776663
No 31
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=48.23 E-value=22 Score=19.04 Aligned_cols=17 Identities=6% Similarity=0.155 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028911 153 LKEKEKILIEENTKLRE 169 (202)
Q Consensus 153 l~~k~~~l~~en~~L~~ 169 (202)
|..|+..|..+|..|..
T Consensus 6 LEdKVEeLl~~~~~Le~ 22 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXEN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHH
Confidence 33344444444444433
No 32
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.18 E-value=7.6 Score=26.53 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=14.2
Q ss_pred hHHHHHHHhhhHhHHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAK 108 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~ 108 (202)
+..|..|..+|+++++.|+..+
T Consensus 21 i~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777666655
No 33
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.08 E-value=63 Score=21.75 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 133 RSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 133 ~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
.++..+..++..+ ...|..|.++...+..+-..|+..+.
T Consensus 70 ea~~~L~~~~e~i-e~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 70 KAVAELKEKIETL-EVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333443443222 55566666666666665555555444
No 34
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=45.82 E-value=37 Score=18.80 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 147 REQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 147 ~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
-+.....=.|++.|+++|..|..++..
T Consensus 12 NdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 12 NDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556888999999999988753
No 35
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=43.86 E-value=10 Score=25.86 Aligned_cols=32 Identities=16% Similarity=0.357 Sum_probs=23.9
Q ss_pred cCcceeeeeecCCCCccccccc-ccchhhhhhhc
Q 028911 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERYQK 71 (202)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~-s~~~il~RY~~ 71 (202)
|+---.++|+ |+|..|...+| .+..||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5555556666 88888887777 89999998754
No 36
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.77 E-value=40 Score=17.95 Aligned_cols=13 Identities=8% Similarity=-0.038 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 028911 156 KEKILIEENTKLR 168 (202)
Q Consensus 156 k~~~l~~en~~L~ 168 (202)
|+..|..+|..|.
T Consensus 8 KvEeLl~~~~~Le 20 (33)
T 3c3g_A 8 KLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHH
Confidence 3333333333333
No 37
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.20 E-value=43 Score=18.19 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 143 NQLFREQIEKLKEKEKILIEENTKLR 168 (202)
Q Consensus 143 ~~ll~~~i~~l~~k~~~l~~en~~L~ 168 (202)
+..++..|+.-...+..|.++|..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34556666666667777888887775
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.26 E-value=1e+02 Score=21.97 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 91 KEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 91 ~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
-.++.+++.+.+.++.....+ -+|+..|...|...-..+ .-+..+++.|+++...|+.++..|...
T Consensus 67 adEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~-----e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKA-----ESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554333222 345555555444443333 223455566677777777777776665
Q ss_pred Hc
Q 028911 171 CG 172 (202)
Q Consensus 171 ~~ 172 (202)
+.
T Consensus 133 ~~ 134 (138)
T 3hnw_A 133 LN 134 (138)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.49 E-value=83 Score=20.68 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 147 REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 147 ~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
..+-..|+.++..|..|...|+..+.
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555554444
No 40
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.13 E-value=68 Score=20.95 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
.-|+++|+.++.....|.++|..|+.-
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.87 E-value=2e+02 Score=24.93 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 147 REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 147 ~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
..+++..+++...+.+|+..+..++.
T Consensus 550 e~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 550 EKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666665554
No 42
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=37.42 E-value=99 Score=21.26 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=40.0
Q ss_pred cchHHHHHHHhhhHhHHHHHHHHHhhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028911 85 DHSQHAKEETSNMMTKLEFLEVAKRKL--LGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (202)
Q Consensus 85 ~~~~~l~~e~~kL~~~~e~le~~~r~l--~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK 142 (202)
..++.|..++.+|+-++..|....+.- .+.+-..|+..+=+.+-.....+|...-.+|
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999988777652 2245677999888887777777776665554
No 43
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=37.27 E-value=16 Score=27.10 Aligned_cols=36 Identities=17% Similarity=0.504 Sum_probs=25.6
Q ss_pred hcccCcceeeeeecCCCCccc-cccc-------ccchhhhhhhc
Q 028911 36 SVLCDAEVALIIFSPRGKLYE-FSSC-------SINKTIERYQK 71 (202)
Q Consensus 36 svLCda~valivfs~~gk~~~-~~s~-------s~~~il~RY~~ 71 (202)
+.-|++.|-+++|||.-+.|. |... .+..||..|+.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 456999999999999888775 5443 35555555544
No 44
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.13 E-value=44 Score=22.69 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 149 QIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 149 ~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++..+++++..|..||..|+..++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 45
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=36.67 E-value=8 Score=26.62 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=34.8
Q ss_pred ecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhh
Q 028911 11 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIE 67 (202)
Q Consensus 11 I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~ 67 (202)
|.++.....||-=.-..|.++.-+|+.+ |++.|+|.|+-|-. ..++..|.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~l--dTVde~L~ 70 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRL--DTVDEELT 70 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEE--EEECGGGG
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEe--cccchhhh
Confidence 3444555667777778889999999954 59999999987654 33444444
No 46
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=36.12 E-value=32 Score=17.46 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHc
Q 028911 157 EKILIEENTKLREQCG 172 (202)
Q Consensus 157 ~~~l~~en~~L~~~~~ 172 (202)
...|+-||+.|..+++
T Consensus 8 lasleaenkqlkakve 23 (31)
T 1p9i_A 8 LASLEAENKQLKAKVE 23 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456667777776655
No 47
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=35.84 E-value=1.2e+02 Score=21.65 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=8.1
Q ss_pred HHHHHhhhHhHHHHHHHH
Q 028911 90 AKEETSNMMTKLEFLEVA 107 (202)
Q Consensus 90 l~~e~~kL~~~~e~le~~ 107 (202)
++.++..|..+++.+...
T Consensus 73 ~~~~~~~L~~~l~~~~kE 90 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKE 90 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.77 E-value=72 Score=19.15 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
.-+..+...|+.++..|.+|+..|...+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777778888888888887765
No 49
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=35.76 E-value=88 Score=30.51 Aligned_cols=43 Identities=19% Similarity=0.452 Sum_probs=28.1
Q ss_pred cchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcc
Q 028911 26 NGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (202)
Q Consensus 26 ~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~ 72 (202)
.+|+|.- .|.+-.++ ..+++|.+.|++..|.+ +++||..|..+
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~~--l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKYNS--VNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEECSS--HHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCcCC--HHHHHHHHHHH
Confidence 3555543 24333332 25788999999988855 68888888664
No 50
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=35.70 E-value=44 Score=21.68 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
..|+.+|+.++.....|.++|..|..
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666777777766654
No 51
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.14 E-value=58 Score=21.28 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 145 LFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 145 ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
.|++.|+.++.....|.++|..|+.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666667777766654
No 52
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=34.75 E-value=1.5e+02 Score=22.46 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 028911 150 IEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 150 i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+..|+.....|...+..|..++.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443
No 53
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.06 E-value=65 Score=18.17 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 119 CTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEE 163 (202)
Q Consensus 119 Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~e 163 (202)
+|-+||-+--..++.-+..+ .++|..|++|.+.|++.
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kt--------e~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMV--------EQQISKLKKKQQQLEEE 38 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence 44455555444444444444 45677778888877764
No 54
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=34.02 E-value=93 Score=19.95 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 028911 152 KLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 152 ~l~~k~~~l~~en~~L~~~~~ 172 (202)
.++.+...|..+|..|+.++.
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666655554
No 55
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=33.86 E-value=1.4 Score=28.89 Aligned_cols=30 Identities=40% Similarity=0.668 Sum_probs=21.1
Q ss_pred eeeeeecCCCCcccccccccchhhhhhhcccc
Q 028911 43 VALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (202)
Q Consensus 43 valivfs~~gk~~~~~s~s~~~il~RY~~~~~ 74 (202)
||||||+| +|+++.+. ++-..+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~r-~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR-AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH-HHHHHHHHHHHHHH
Confidence 78999999 58887765 35566666666543
No 56
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.62 E-value=62 Score=17.75 Aligned_cols=19 Identities=53% Similarity=0.497 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028911 148 EQIEKLKEKEKILIEENTK 166 (202)
Q Consensus 148 ~~i~~l~~k~~~l~~en~~ 166 (202)
+||..|+.+...|.+|--.
T Consensus 15 eQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554433
No 57
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.57 E-value=51 Score=19.37 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 028911 152 KLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 152 ~l~~k~~~l~~en~~L~~~~~ 172 (202)
.|-+++..|..||..|++.+.
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344556666667777777665
No 58
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.52 E-value=93 Score=19.79 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 146 FREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 146 l~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
|..++..|+.....|..+|..|..++...
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666777777888888888887654
No 59
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.46 E-value=65 Score=17.93 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 028911 117 EPCTIDELQQLENQLERSLS 136 (202)
Q Consensus 117 ~~Ls~~EL~~Le~~Le~~L~ 136 (202)
+++|.+||..||..|+.--+
T Consensus 15 egfspeelaaleselqalek 34 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEK 34 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 46899999999987765433
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.26 E-value=1.7e+02 Score=22.77 Aligned_cols=49 Identities=20% Similarity=0.254 Sum_probs=27.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 028911 120 TIDELQQLENQLERSLSRIRARKNQLF--REQIEKLKEKEKILIEENTKLR 168 (202)
Q Consensus 120 s~~EL~~Le~~Le~~L~~Ir~RK~~ll--~~~i~~l~~k~~~l~~en~~L~ 168 (202)
+.+|+..|...++..-.++..--.+++ +++++.++.....+...-..+.
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~ 138 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELE 138 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888877666654433332 2444444444443333333333
No 61
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=33.20 E-value=51 Score=24.84 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028911 148 EQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 148 ~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
++|..|+.+...|++||..|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888999999998764
No 62
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.15 E-value=1.1e+02 Score=20.29 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=41.2
Q ss_pred chHHHHHHHhhhHhHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 86 HSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENT 165 (202)
Q Consensus 86 ~~~~l~~e~~kL~~~~e~le~~~r~l~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~ 165 (202)
.++.|...++..-.+...|+..++.+. .++..+. ..-.++-..++...|..|++++..+..++.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le---------~~i~~l~-------~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~ 73 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILL---------AELEQLK-------GQGKSRLGDLYEEEMRELRRQVDQLTNDKA 73 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHh-------hccCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555555555555544432 1121111 112334455778888888888888888887
Q ss_pred HHHHHHc
Q 028911 166 KLREQCG 172 (202)
Q Consensus 166 ~L~~~~~ 172 (202)
.|.-++.
T Consensus 74 ~l~~e~d 80 (93)
T 3s4r_A 74 RVEVERD 80 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776554
No 63
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=33.06 E-value=33 Score=23.68 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 150 IEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 150 i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
++.|..+...|+-||+.|++++..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567778888899999999999964
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.91 E-value=1.7e+02 Score=22.72 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 028911 128 ENQLERSL 135 (202)
Q Consensus 128 e~~Le~~L 135 (202)
|..+...+
T Consensus 110 E~eile~~ 117 (256)
T 3na7_A 110 NREIENLQ 117 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.97 E-value=1.1e+02 Score=26.52 Aligned_cols=134 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred cchhhhhhhhhcccCcceeeeeecCCCCccccccc--ccchhhhhhhcccccccccccccccchHHHHHHHhhhHhHHHH
Q 028911 26 NGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC--SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEF 103 (202)
Q Consensus 26 ~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~--s~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~~~~e~ 103 (202)
.|+.||.-|.. -||+=| ..+++.+-.||+. .+.+.|-+|+...... -++++..-.++.........
T Consensus 54 ~~~~~~~~~~~--~~a~~c---~~~~~~~G~~CPTtC~l~D~L~k~q~~V~~~-------LqeLe~~l~~lsn~Ts~~~~ 121 (464)
T 1m1j_B 54 KQAMKKGPIIY--PDAGGC---KHPLDELGVLCPTGCELQTTLLKQEKTVKPV-------LRDLKDRVAKFSDTSTTMYQ 121 (464)
T ss_dssp ---------CC--CCCSCE---ECSSTTTCEEEECTTHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccCcccC--CCCCCc---cccCCCccCcCCCccHHHHHHHHhhhhhHhH-------HHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHhhhcCCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 104 LEVAKRKLLGDGLEPCTIDE--LQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 104 le~~~r~l~Ge~L~~Ls~~E--L~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
+-..+...+.+.-..+.-.+ +.+....|+.....|......-....|..|+.....+......|...+
T Consensus 122 ~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 122 YVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
No 66
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.23 E-value=91 Score=18.95 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 145 LFREQIEKLKEKEKILIEENTKLREQC 171 (202)
Q Consensus 145 ll~~~i~~l~~k~~~l~~en~~L~~~~ 171 (202)
-+..+...|+.++..|..|+..|+.-+
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777777776654
No 67
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.20 E-value=2.8e+02 Score=24.54 Aligned_cols=39 Identities=10% Similarity=0.239 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 130 QLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 130 ~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
.|+..+..|+.+-+..+ .+|..||.-+..+..+-+.|.-
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333 4445555555444444444443
No 68
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=30.71 E-value=56 Score=17.52 Aligned_cols=16 Identities=6% Similarity=0.243 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028911 154 KEKEKILIEENTKLRE 169 (202)
Q Consensus 154 ~~k~~~l~~en~~L~~ 169 (202)
..|+..|..+|..|..
T Consensus 7 EdKVEeLl~~n~~Le~ 22 (34)
T 1uo4_A 7 EDKGEEILSKLYHIEN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 3344444444444433
No 69
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=30.56 E-value=1.1e+02 Score=19.72 Aligned_cols=26 Identities=46% Similarity=0.756 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
-.+..+|+.|+++++.+.++-+.|+.
T Consensus 71 l~ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 71 LVYKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46678899999999999998877754
No 70
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=30.38 E-value=2e+02 Score=22.62 Aligned_cols=31 Identities=6% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
+++.+.+..+.+.|-.|+.+...+..++...
T Consensus 194 ~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~ 224 (242)
T 3uux_B 194 EKLLGKIANIEQNQLLLEDNLKQIDDRLDFL 224 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666665533
No 71
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=30.04 E-value=14 Score=27.35 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=28.0
Q ss_pred hhhcccCcce----eeeeecCCCCcccccccccchhhhhhhccccccccc
Q 028911 34 ELSVLCDAEV----ALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGIN 79 (202)
Q Consensus 34 ELsvLCda~v----alivfs~~gk~~~~~s~s~~~il~RY~~~~~~~~~~ 79 (202)
|+|.-||.+| +.+..-.+|++|.|+|+--...+ .....|....|.
T Consensus 6 ~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f-~~krnPRkl~WT 54 (158)
T 4a17_T 6 GTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLS-LRKVKAQKITWT 54 (158)
T ss_dssp EECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHH-HHTCCGGGSTTS
T ss_pred EEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHH-HcccCcccchhH
Confidence 5677788877 44444578999999997222222 344455555553
No 72
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.73 E-value=1e+02 Score=24.47 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 123 ELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLRE 169 (202)
Q Consensus 123 EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~ 169 (202)
.+.+|+.+++.. ..+++.|.+.+..++++...|.+|+..|+.
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555554332 335566777888888888888888887764
No 73
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=29.72 E-value=59 Score=17.39 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 028911 156 KEKILIEENTKL 167 (202)
Q Consensus 156 k~~~l~~en~~L 167 (202)
|+..|..+|..|
T Consensus 9 kVEeLl~~~~~L 20 (34)
T 2hy6_A 9 AVEELASANYHL 20 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhHHH
Confidence 333333333333
No 74
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.75 E-value=1.1e+02 Score=20.25 Aligned_cols=35 Identities=26% Similarity=0.593 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 028911 123 ELQQLENQLERSLSRIR--ARKNQLFREQIEKLKEKE 157 (202)
Q Consensus 123 EL~~Le~~Le~~L~~Ir--~RK~~ll~~~i~~l~~k~ 157 (202)
+|+.|-..|-.-+.+|| +..+..|..+|..++.+.
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~ 46 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQG 46 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56777777777777777 345666666666666553
No 75
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=28.51 E-value=14 Score=18.39 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=8.1
Q ss_pred CCcccccccccc
Q 028911 15 TSRQVTFSKRRN 26 (202)
Q Consensus 15 ~~R~vtfsKRr~ 26 (202)
+.|++.|.||+.
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 457777777763
No 76
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=28.18 E-value=1.8e+02 Score=21.31 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 120 TIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 120 s~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
|+.|...|+..-...+.+|+.++.+|- ++...+-=-++|.+-|..+..+
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~Lq--eL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQLQ--ELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999987775542 2222222346778888777764
No 77
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=27.94 E-value=1.7e+02 Score=21.05 Aligned_cols=67 Identities=12% Similarity=0.239 Sum_probs=41.6
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhh---------------cCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAKRKL---------------LGD--------GLEPCTIDELQQLENQLERSLSRIRARKN 143 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~r~l---------------~Ge--------~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~ 143 (202)
+..+-.++.+++++++.++.++... .|. |-+-+..+|...||+.|-.+++....+-.
T Consensus 43 m~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~aAvNdA~~ka~ 122 (143)
T 1ybx_A 43 INNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRKAD 122 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666666666665542 121 11224456777888888888888888777
Q ss_pred HHHHHHHHHH
Q 028911 144 QLFREQIEKL 153 (202)
Q Consensus 144 ~ll~~~i~~l 153 (202)
+...+.+..+
T Consensus 123 e~~~e~M~~l 132 (143)
T 1ybx_A 123 EMVTAEISKI 132 (143)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 78
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.53 E-value=1.3e+02 Score=19.68 Aligned_cols=26 Identities=4% Similarity=0.169 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 147 REQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 147 ~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
...|..|.++...+..+-..|...+.
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777776666654
No 79
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=27.48 E-value=76 Score=23.96 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 146 FREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 146 l~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
+.+.+..|+.+...|+++|..|+..
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777788888877765
No 80
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=27.45 E-value=15 Score=26.52 Aligned_cols=36 Identities=19% Similarity=0.393 Sum_probs=27.7
Q ss_pred cccccccccch---------hhhhhhhhcccCcceeeeeecCCCC
Q 028911 18 QVTFSKRRNGL---------LKKAFELSVLCDAEVALIIFSPRGK 53 (202)
Q Consensus 18 ~vtfsKRr~GL---------~KKA~ELsvLCda~valivfs~~gk 53 (202)
-..||+-|+.| +-+..++.+-||.|+-|+..-+.|-
T Consensus 56 ~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~ 100 (138)
T 1zps_A 56 AHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 100 (138)
T ss_dssp CEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred EEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCC
Confidence 34457767755 4456799999999999999988883
No 81
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=27.20 E-value=61 Score=25.56 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred eecCCCCccccccccccchhhhhhhhhcccC
Q 028911 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCD 40 (202)
Q Consensus 10 ~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCd 40 (202)
.|++..-=++|+-||-.|+..|-.+|+.--+
T Consensus 118 ~iev~~~~~itmrkri~~Itqrlg~ltL~~~ 148 (246)
T 1z56_A 118 RMQDDEVWKVVMELESSAIIRKIAELTLHPV 148 (246)
T ss_dssp -------------------------------
T ss_pred CceeCCEEEEEEeehhhHHHhhheeEEeecC
Confidence 3444444578999999999988887765444
No 82
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=27.06 E-value=3.1e+02 Score=23.74 Aligned_cols=121 Identities=12% Similarity=0.172 Sum_probs=62.4
Q ss_pred cCcceeeeeecCCCCccccccc--ccchhhhhhhcccccccccccccccchHHHHHHHhhhH-------hHHHHHHHH--
Q 028911 39 CDAEVALIIFSPRGKLYEFSSC--SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMM-------TKLEFLEVA-- 107 (202)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~--s~~~il~RY~~~~~~~~~~~~~~~~~~~~l~~e~~kL~-------~~~e~le~~-- 107 (202)
-||.-|.+ ++..+=+||.. .+.+.|-+|+..... +++.|...+..+. .-+..++..
T Consensus 60 pd~g~c~~---~~~~fG~yCPTtCglad~L~kye~~V~~----------dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~ 126 (461)
T 3ghg_B 60 PDAGGCLH---ADPDLGVLCPTGCQLQEALLQQERPIRN----------SVDELNNNVEAVSQTSSSSFQYMYLLKDLWQ 126 (461)
T ss_dssp CCCCCCBC---SSTTTCBCEECHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCCCccc---cCcccCCcCCCcchHHHHHHhcccchhh----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 67766644 33444456654 799999999875432 2333332222221 111111111
Q ss_pred --HhhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 108 --KRKLLG-DGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 108 --~r~l~G-e~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++...+ +.+-.=+-++|.+....+...+...-.---+.|...++.+..|+..|...-..+...+.
T Consensus 127 ~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~ 194 (461)
T 3ghg_B 127 KRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQMEYCR 194 (461)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 111111 22222333444444444444444444444566777788888888888888777777764
No 83
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.00 E-value=1.6e+02 Score=20.48 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=6.2
Q ss_pred HHHHHhhhHhHHHHHH
Q 028911 90 AKEETSNMMTKLEFLE 105 (202)
Q Consensus 90 l~~e~~kL~~~~e~le 105 (202)
+..++..++.....|+
T Consensus 50 L~~el~~l~~~~~sLE 65 (131)
T 3tnu_A 50 LEIELQSQLSMKASLE 65 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHH
Confidence 3333444433333333
No 84
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=26.92 E-value=14 Score=29.39 Aligned_cols=20 Identities=35% Similarity=0.865 Sum_probs=12.8
Q ss_pred CcceeeeeecCCCCccc--ccc
Q 028911 40 DAEVALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 40 da~valivfs~~gk~~~--~~s 59 (202)
+-|-++-+|||.|++|+ |+.
T Consensus 11 ~yd~~~t~fSp~Grl~QvEYA~ 32 (264)
T 3h4p_A 11 AYDRAITVFSPEGRLYQVEYAR 32 (264)
T ss_dssp -----CCCCCSSSSCHHHHHHH
T ss_pred ccCCCcceECCCCeeHHHHhHH
Confidence 44677889999999995 654
No 85
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.79 E-value=92 Score=19.92 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 148 EQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 148 ~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+-|..|+..+..|.+++..|+..+.
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788888888887765
No 86
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=26.63 E-value=13 Score=30.07 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=15.8
Q ss_pred cccCcceeeeeecCCCCccc
Q 028911 37 VLCDAEVALIIFSPRGKLYE 56 (202)
Q Consensus 37 vLCda~valivfs~~gk~~~ 56 (202)
+-.+-|-++-+|||.|++|+
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHH
T ss_pred CcCCccCCcccCCCCCchHH
Confidence 44566778889999999996
No 87
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.40 E-value=1.6e+02 Score=20.36 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=4.5
Q ss_pred HHhhhHhHHHHH
Q 028911 93 ETSNMMTKLEFL 104 (202)
Q Consensus 93 e~~kL~~~~e~l 104 (202)
++..++..+..|
T Consensus 37 Ei~elrr~iq~L 48 (129)
T 3tnu_B 37 EISEMNRMIQRL 48 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 88
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=24.99 E-value=14 Score=28.70 Aligned_cols=16 Identities=38% Similarity=0.883 Sum_probs=12.5
Q ss_pred eeeeecCCCCccc--ccc
Q 028911 44 ALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 44 alivfs~~gk~~~--~~s 59 (202)
++-+|||.|++|+ |+.
T Consensus 3 ~~t~fsp~Grl~QvEyA~ 20 (242)
T 1ryp_E 3 GVSTFSPEGRLFQVEYSL 20 (242)
T ss_dssp CTTCBCTTSCBHHHHHHH
T ss_pred CCceECCCCcChHHHhHH
Confidence 4568999999995 653
No 89
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=24.21 E-value=33 Score=21.99 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=18.3
Q ss_pred eeeeecCCCCccccccc-ccchhhh
Q 028911 44 ALIIFSPRGKLYEFSSC-SINKTIE 67 (202)
Q Consensus 44 alivfs~~gk~~~~~s~-s~~~il~ 67 (202)
-+.||.|+|..++++.. .+.+++.
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~ 31 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAY 31 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHH
Confidence 36789999999999885 5555543
No 90
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=24.16 E-value=2.3e+02 Score=21.27 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 113 GDGLEPCTIDELQQLENQLERSLSRIRARKNQLF 146 (202)
Q Consensus 113 Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll 146 (202)
.-++++ |.++|+++-..|...+..+-+-|..+-
T Consensus 50 PLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE 82 (182)
T 1ytz_I 50 PLSLPG-SMQELQELSKKLHAKIDSVDEERYDTE 82 (182)
T ss_dssp CCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 357888 999999999999999999988887664
No 91
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=24.12 E-value=17 Score=28.31 Aligned_cols=17 Identities=41% Similarity=0.956 Sum_probs=13.5
Q ss_pred ceeeeeecCCCCccc--cc
Q 028911 42 EVALIIFSPRGKLYE--FS 58 (202)
Q Consensus 42 ~valivfs~~gk~~~--~~ 58 (202)
|-++-+|||.|++|. |+
T Consensus 3 d~~~t~fsp~Grl~QvEya 21 (241)
T 1ryp_D 3 DRALSIFSPDGHIFQVEYA 21 (241)
T ss_dssp CCCCSCCBTTTBCHHHHHH
T ss_pred CCCceeECCCCcchHHHHH
Confidence 456779999999995 65
No 92
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.56 E-value=47 Score=24.49 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=29.0
Q ss_pred hhhcccCcce----eeeeecCCCCccccccc-ccchhhhhhhccccccccccc
Q 028911 34 ELSVLCDAEV----ALIIFSPRGKLYEFSSC-SINKTIERYQKKTKDIGINSK 81 (202)
Q Consensus 34 ELsvLCda~v----alivfs~~gk~~~~~s~-s~~~il~RY~~~~~~~~~~~~ 81 (202)
|+|.-||..| +.+..-.+|++|.|+|+ +-.. + .....|....|...
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~-f-~~krnPRKl~WT~~ 54 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESA-F-LSKRNPRQINWTVL 54 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHH-H-HTTCCTTTCTTCST
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHH-H-HccCCcccchhHHH
Confidence 6777888877 44444478899999997 4332 2 34445655555433
No 93
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=23.35 E-value=99 Score=22.23 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+++++++..+-..+...-...-..-..++..++..+.++...|+.....|...+.
T Consensus 67 G~sl~eI~~~l~~~~~~~~~~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~~~ 121 (154)
T 2zhg_A 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIG 121 (154)
T ss_dssp TCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666666665543221100000112245556666777777777777777777765
No 94
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.22 E-value=1.9e+02 Score=20.06 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 127 LENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 127 Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
|-..|+.--... ..+.+-+.++|..|.++.+....+-..|+....
T Consensus 58 L~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 58 LMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 333444433333 335667788999999998888888888887765
No 95
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=23.21 E-value=18 Score=28.50 Aligned_cols=21 Identities=19% Similarity=0.613 Sum_probs=16.0
Q ss_pred cCcceeeeeecCCCCccc--ccc
Q 028911 39 CDAEVALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 39 Cda~valivfs~~gk~~~--~~s 59 (202)
.+=|-++-+|||.|++|+ |+.
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~ 27 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAM 27 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHH
T ss_pred cccCCCCccCCcCCccHHHHhHH
Confidence 445667789999999995 654
No 96
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=23.18 E-value=18 Score=28.32 Aligned_cols=19 Identities=37% Similarity=0.600 Sum_probs=14.7
Q ss_pred cceeeeeecCCCCccc--ccc
Q 028911 41 AEVALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 41 a~valivfs~~gk~~~--~~s 59 (202)
-|-++-+|||.|++|+ |+.
T Consensus 5 yd~~~t~fsp~Grl~QvEyA~ 25 (250)
T 1ryp_B 5 YSFSLTTFSPSGKLGQIDYAL 25 (250)
T ss_dssp CCSBSSCBCTTSCBHHHHHHH
T ss_pred ccCCceeECCCCccHHHHhHH
Confidence 4567789999999995 643
No 97
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.73 E-value=1.3e+02 Score=22.97 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 145 LFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 145 ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
-|+++|+.++.....|.++|..|+.-
T Consensus 119 ~Lh~~ie~l~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 119 KLHKEIEQKDNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666655543
No 98
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=22.52 E-value=19 Score=27.82 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=14.6
Q ss_pred cceeeeeecCCCCccc--ccc
Q 028911 41 AEVALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 41 a~valivfs~~gk~~~--~~s 59 (202)
=|-.+-+|||.|++|+ |+.
T Consensus 5 yd~~~t~fsp~Grl~QvEya~ 25 (233)
T 1iru_B 5 YSFSLTTFSPSGKLVQIEYAL 25 (233)
T ss_dssp CCSBSCCCCTTSCCHHHHHHH
T ss_pred ccCCceeECCCCeEehhHhHH
Confidence 3556779999999995 753
No 99
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=22.30 E-value=1.3e+02 Score=19.00 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 028911 119 CTIDELQQLENQLERSLSRIRAR 141 (202)
Q Consensus 119 Ls~~EL~~Le~~Le~~L~~Ir~R 141 (202)
|+.+++.++-+-|...|.+||.|
T Consensus 4 ls~~~~e~ir~IL~~NLykiRqr 26 (70)
T 2ygg_A 4 LSKDKEEEIRKILRNNLQKTRQR 26 (70)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999977
No 100
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=21.81 E-value=2e+02 Score=19.98 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
++|++|+..+-...+..-... ..-..++.+++..+.++...|+.....|...+.
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 110 (135)
T 1q06_A 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALAN 110 (135)
T ss_dssp TCCHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777776654332110001 112245666666777777777666666666554
No 101
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=21.74 E-value=20 Score=28.03 Aligned_cols=18 Identities=33% Similarity=0.912 Sum_probs=13.7
Q ss_pred ceeeeeecCCCCccc--ccc
Q 028911 42 EVALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 42 ~valivfs~~gk~~~--~~s 59 (202)
|-.+-+|||.|++|. |+-
T Consensus 4 d~~~t~fsp~Grl~QvEYA~ 23 (248)
T 1iru_D 4 DRAITVFSPDGHLFQVEYAQ 23 (248)
T ss_dssp CCCCSCCCTTSCCHHHHHHH
T ss_pred cCCCceECCCCcchHHHHHH
Confidence 445678999999995 653
No 102
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.42 E-value=1.7e+02 Score=18.74 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 118 PCTIDELQQLENQLERSLS-RIRARKNQLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~-~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
++|++|+..+-...+..-. .+ ..-..++.+++..+.++...|+.....|...+..
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888887654321100 11 1223567777777788877777777777776653
No 103
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=20.81 E-value=1.1e+02 Score=18.69 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=20.9
Q ss_pred CCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 115 GLEPCTIDELQQ----LENQLERSLSRIRARKNQLFREQIEKLKEK 156 (202)
Q Consensus 115 ~L~~Ls~~EL~~----Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k 156 (202)
+...++.+++.. |+..+..+.....--+-..+.++|..|+++
T Consensus 13 ~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 13 VPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp SSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 345555555444 444444444444444555556666665543
No 104
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=20.79 E-value=1.4e+02 Score=17.44 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 121 IDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKIL 160 (202)
Q Consensus 121 ~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l 160 (202)
+++|..||.+. -.=|++++.+.+..++++...+
T Consensus 12 ld~l~~LEkqF-------~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQF-------SELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666433 2346778888888887776554
No 105
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.21 E-value=1.8e+02 Score=18.77 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Q 028911 151 EKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 151 ~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
..+......|..+|..|..++..
T Consensus 62 ~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 62 QKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444566777777776653
Done!