Query 028911
Match_columns 202
No_of_seqs 185 out of 1405
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 06:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1egwa_ d.88.1.1 (A:) Myocyte 100.0 9.6E-41 7E-45 219.3 0.1 71 2-72 1-71 (71)
2 d1srsa_ d.88.1.1 (A:) Serum re 100.0 1.3E-38 9.8E-43 214.2 -0.4 71 1-71 2-72 (84)
3 d1mnma_ d.88.1.1 (A:) MCM1 tra 100.0 3.5E-38 2.6E-42 213.6 -0.6 73 2-74 3-75 (85)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 61.1 17 0.0012 23.1 7.7 30 144-173 75-104 (107)
5 d1pvma3 g.41.13.1 (A:143-178) 60.2 2.3 0.00017 21.3 1.7 26 35-60 3-30 (36)
6 d1r8ea1 a.6.1.3 (A:3-120) Tran 54.7 22 0.0016 22.6 6.7 27 144-170 87-113 (118)
7 d1q08a_ a.6.1.3 (A:) Transcrip 51.6 17 0.0012 22.5 5.4 53 118-170 16-68 (94)
8 d1kafa_ d.199.1.1 (A:) DNA-bin 48.8 1.9 0.00014 27.7 0.2 53 5-72 22-75 (108)
9 d1bjta_ e.11.1.1 (A:) DNA topo 47.2 33 0.0024 29.5 8.4 27 44-72 556-582 (760)
10 d1uklc_ a.38.1.1 (C:) SREBP-2 41.2 24 0.0017 19.9 4.5 25 148-172 33-57 (61)
11 d1zpsa1 b.168.1.1 (A:8-131) Ph 36.8 3.5 0.00026 27.6 0.1 38 16-53 47-93 (124)
12 d1m2da_ c.47.1.11 (A:) Thiored 36.1 7.6 0.00056 24.5 1.7 32 39-71 57-89 (101)
13 d2oa5a1 d.362.1.1 (A:7-102) Un 33.9 50 0.0036 20.6 7.3 56 87-142 4-61 (96)
14 d2oa5a1 d.362.1.1 (A:7-102) Un 33.9 15 0.0011 23.2 2.8 25 150-174 4-28 (96)
15 d1e52a_ a.2.9.1 (A:) C-termina 30.0 22 0.0016 20.0 2.8 40 117-156 8-51 (56)
16 d1u3em2 d.285.1.1 (M:106-174) 28.3 11 0.0008 21.9 1.3 18 43-60 16-33 (69)
17 d1iruc_ d.153.1.4 (C:) Proteas 27.5 5.5 0.0004 29.5 -0.3 17 42-58 5-23 (250)
18 d1r8da_ a.6.1.3 (A:) Multidrug 24.9 52 0.0038 20.3 4.5 10 119-128 60-69 (109)
19 d1yara1 d.153.1.4 (A:13-233) P 24.1 8.3 0.00061 27.7 0.2 12 47-58 2-15 (221)
20 d2vgba3 c.49.1.1 (A:440-573) P 24.0 14 0.00098 24.5 1.3 26 27-53 15-40 (134)
21 d1irug_ d.153.1.4 (G:) Proteas 23.9 7.9 0.00058 28.5 0.1 22 37-58 3-26 (245)
22 d1rypf_ d.153.1.4 (F:) Proteas 22.8 7.3 0.00053 28.4 -0.3 18 42-59 6-25 (233)
23 d1t27a_ d.129.3.4 (A:) Phoshat 20.8 44 0.0032 25.0 3.8 27 114-140 233-259 (269)
24 d1b43a1 a.60.7.1 (A:220-339) F 20.5 9.2 0.00067 25.1 -0.2 11 34-44 8-18 (120)
No 1
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=9.6e-41 Score=219.31 Aligned_cols=71 Identities=49% Similarity=0.834 Sum_probs=69.5
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcc
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~ 72 (202)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||++++|++||.++
T Consensus 1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~~ 71 (71)
T d1egwa_ 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEY 71 (71)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC
T ss_pred CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999763
No 2
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1.3e-38 Score=214.23 Aligned_cols=71 Identities=37% Similarity=0.549 Sum_probs=69.6
Q ss_pred CCccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhc
Q 028911 1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQK 71 (202)
Q Consensus 1 MgR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~ 71 (202)
+||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.|+++|..
T Consensus 2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~ 72 (84)
T d1srsa_ 2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 72 (84)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999975
No 3
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=3.5e-38 Score=213.57 Aligned_cols=73 Identities=42% Similarity=0.651 Sum_probs=70.5
Q ss_pred CccccceeeecCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcccc
Q 028911 2 VRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTK 74 (202)
Q Consensus 2 gR~Ki~ik~I~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~~~ 74 (202)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..|++||...+.
T Consensus 3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~~ 75 (85)
T d1mnma_ 3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNL 75 (85)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHH
T ss_pred CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcccH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999986543
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=61.08 E-value=17 Score=23.06 Aligned_cols=30 Identities=3% Similarity=0.151 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQCGM 173 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~~~~ 173 (202)
..+..+|..|.+.+..+.++-..++.++..
T Consensus 75 e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 75 ETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777778888888877777777653
No 5
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=60.21 E-value=2.3 Score=21.30 Aligned_cols=26 Identities=19% Similarity=0.430 Sum_probs=20.2
Q ss_pred hhcccCcceeeeeecCCCC--ccccccc
Q 028911 35 LSVLCDAEVALIIFSPRGK--LYEFSSC 60 (202)
Q Consensus 35 LsvLCda~valivfs~~gk--~~~~~s~ 60 (202)
|+--||+-|-+-||...|. +|-.++|
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvfrcsnp 30 (36)
T d1pvma3 3 LCPKCGVGVLEPVYNEKGEIKVFRCSNP 30 (36)
T ss_dssp BCTTTSSSBEEEEECTTSCEEEEEESCT
T ss_pred cCCccCceEEEEeecCCCcEEEEEcCCC
Confidence 5667999999999999995 4544545
No 6
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=54.71 E-value=22 Score=22.63 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 144 QLFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 144 ~ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
+.+.++++.|+.....+......+...
T Consensus 87 ~~l~~~i~~l~~~~~~l~~~~~~l~~~ 113 (118)
T d1r8ea1 87 RQIREKLDFLSALEQTISLVKKRMKRQ 113 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444444433334433
No 7
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=51.64 E-value=17 Score=22.53 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 118 PCTIDELQQLENQLERSLSRIRARKNQLFREQIEKLKEKEKILIEENTKLREQ 170 (202)
Q Consensus 118 ~Ls~~EL~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k~~~l~~en~~L~~~ 170 (202)
++|++|+.+|-..-+..-..--..-..++.+++..+..+...|+.--..|...
T Consensus 16 GFsL~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L~~l 68 (94)
T d1q08a_ 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (94)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888876544321111111223466777777777777776655555543
No 8
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=48.82 E-value=1.9 Score=27.72 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=37.9
Q ss_pred ccceeee-cCCCCccccccccccchhhhhhhhhcccCcceeeeeecCCCCcccccccccchhhhhhhcc
Q 028911 5 KTQMKRI-ENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (202)
Q Consensus 5 Ki~ik~I-~n~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gk~~~~~s~s~~~il~RY~~~ 72 (202)
+|++|.| +|.++=.++|+||-.|+-+ +-| -.+|.+--|+-.-++..+..|.+.
T Consensus 22 ~i~lk~v~inRsNyev~f~krT~GiR~----fEi-----------~n~G~~RIfgYkm~e~~~q~Ft~l 75 (108)
T d1kafa_ 22 GFVLKKVEIYRSNYLAILEKRTNGIRN----FEI-----------NNNGNMRIFGYKMMEHHIQKFTDI 75 (108)
T ss_dssp TCCEEEEEEETTEEEEEEEEEETTEEE----EEE-----------CTTSEEEEEEESCCHHHHHHHHTT
T ss_pred ceeEeeeeeccccceeehhhhcCceeE----EEE-----------ecCCcEEEEeeeccHHHHHHHhhc
Confidence 5788888 4777889999999999643 111 256777667766667777777664
No 9
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.24 E-value=33 Score=29.54 Aligned_cols=27 Identities=22% Similarity=0.629 Sum_probs=21.7
Q ss_pred eeeeecCCCCcccccccccchhhhhhhcc
Q 028911 44 ALIIFSPRGKLYEFSSCSINKTIERYQKK 72 (202)
Q Consensus 44 alivfs~~gk~~~~~s~s~~~il~RY~~~ 72 (202)
.+++|.+.|++..|.+ +.+||..|..+
T Consensus 556 Nm~l~d~~g~i~k~~s--l~eIL~~f~~~ 582 (760)
T d1bjta_ 556 NMVAFDPHGKIKKYNS--VNEILSEFYYV 582 (760)
T ss_dssp TEEEECTTSCEEEESS--HHHHHHHHHHH
T ss_pred ceeEEcCCCcccchhh--HHHHHHHHHHH
Confidence 4788999999998855 68888888664
No 10
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.19 E-value=24 Score=19.91 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 028911 148 EQIEKLKEKEKILIEENTKLREQCG 172 (202)
Q Consensus 148 ~~i~~l~~k~~~l~~en~~L~~~~~ 172 (202)
+-|..|++++..|.+|+..|+....
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 57 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888889999998887764
No 11
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=36.80 E-value=3.5 Score=27.57 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=30.4
Q ss_pred Cccccccccccchhhhh---------hhhhcccCcceeeeeecCCCC
Q 028911 16 SRQVTFSKRRNGLLKKA---------FELSVLCDAEVALIIFSPRGK 53 (202)
Q Consensus 16 ~R~vtfsKRr~GL~KKA---------~ELsvLCda~valivfs~~gk 53 (202)
.+-..||+-|+.|-+|. .|+.+-||.|+-++...+.|-
T Consensus 47 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~q~G~ 93 (124)
T d1zpsa1 47 GTAHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGG 93 (124)
T ss_dssp SBCEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSC
T ss_pred CcEEEEEhhhhhhhhhhhhcCCeeEEEEEEcCCCCCEEEEEEecccc
Confidence 34455688888777664 689999999999999998884
No 12
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=36.07 E-value=7.6 Score=24.50 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=23.0
Q ss_pred cCcceeeeeecCCCCccccccc-ccchhhhhhhc
Q 028911 39 CDAEVALIIFSPRGKLYEFSSC-SINKTIERYQK 71 (202)
Q Consensus 39 Cda~valivfs~~gk~~~~~s~-s~~~il~RY~~ 71 (202)
|+..-.++| -|.|..|...+| .+.+|++++..
T Consensus 57 C~~gP~v~i-~P~~~~Y~~v~~e~v~~Iv~~hl~ 89 (101)
T d1m2da_ 57 SMMGPVVVV-YPDGVWYGQVKPEDVDEIVEKHLK 89 (101)
T ss_dssp GGGCSCEEE-ETTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCceEEE-cCCccEEecCCHHHHHHHHHHHHH
Confidence 554444444 477888888887 89999998755
No 13
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=33.95 E-value=50 Score=20.59 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=37.0
Q ss_pred hHHHHHHHhhhHhHHHHHHHHHhhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028911 87 SQHAKEETSNMMTKLEFLEVAKRKL--LGDGLEPCTIDELQQLENQLERSLSRIRARK 142 (202)
Q Consensus 87 ~~~l~~e~~kL~~~~e~le~~~r~l--~Ge~L~~Ls~~EL~~Le~~Le~~L~~Ir~RK 142 (202)
.+.|..++.+|+-++..|....++- .+.+-..|+..+=.-+-.....+|...-.+|
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~qke~~I~s~~~~lts~A~kK 61 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 61 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999998888877763 2345577998877777666666666554444
No 14
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=33.85 E-value=15 Score=23.15 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Q 028911 150 IEKLKEKEKILIEENTKLREQCGMQ 174 (202)
Q Consensus 150 i~~l~~k~~~l~~en~~L~~~~~~~ 174 (202)
++.|..+...|+-||+.|++++...
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~~ 28 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKSS 28 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888899999999999998854
No 15
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=29.99 E-value=22 Score=20.01 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=20.7
Q ss_pred CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028911 117 EPCTIDEL----QQLENQLERSLSRIRARKNQLFREQIEKLKEK 156 (202)
Q Consensus 117 ~~Ls~~EL----~~Le~~Le~~L~~Ir~RK~~ll~~~i~~l~~k 156 (202)
-++|.++| ..|+..+..+-....=-+--.+.++|..|++.
T Consensus 8 ~~ls~~el~k~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~ 51 (56)
T d1e52a_ 8 MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 51 (56)
T ss_dssp CCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 34555554 34444444444444444555566666666553
No 16
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=28.29 E-value=11 Score=21.94 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.3
Q ss_pred eeeeeecCCCCccccccc
Q 028911 43 VALIIFSPRGKLYEFSSC 60 (202)
Q Consensus 43 valivfs~~gk~~~~~s~ 60 (202)
--++|.||+|.-|.|+|.
T Consensus 16 kpIyvis~sGh~y~f~s~ 33 (69)
T d1u3em2 16 KPIIVISPDGIEKEYPST 33 (69)
T ss_dssp CCEEEECTTSCEEEESCH
T ss_pred CCEEEEcCCCceEEcchH
Confidence 347889999999999885
No 17
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.53 E-value=5.5 Score=29.45 Aligned_cols=17 Identities=41% Similarity=0.968 Sum_probs=13.8
Q ss_pred ceeeeeecCCCCccc--cc
Q 028911 42 EVALIIFSPRGKLYE--FS 58 (202)
Q Consensus 42 ~valivfs~~gk~~~--~~ 58 (202)
|-++-+|||+|++|+ |+
T Consensus 5 d~~~t~fsp~Grl~QvEyA 23 (250)
T d1iruc_ 5 DSRTTIFSPEGRLYQVEYA 23 (250)
T ss_dssp CCCTTCCCTTSCCHHHHHH
T ss_pred CCCCeeECCCCcchHHHHH
Confidence 566779999999986 54
No 18
>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN {Bacillus subtilis [TaxId: 1423]}
Probab=24.92 E-value=52 Score=20.29 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=6.8
Q ss_pred CCHHHHHHHH
Q 028911 119 CTIDELQQLE 128 (202)
Q Consensus 119 Ls~~EL~~Le 128 (202)
++++++..+-
T Consensus 60 ~sl~eI~~~l 69 (109)
T d1r8da_ 60 FRLDEIKEML 69 (109)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 6777777654
No 19
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=24.09 E-value=8.3 Score=27.72 Aligned_cols=12 Identities=42% Similarity=1.273 Sum_probs=10.2
Q ss_pred eecCCCCccc--cc
Q 028911 47 IFSPRGKLYE--FS 58 (202)
Q Consensus 47 vfs~~gk~~~--~~ 58 (202)
||||+|++|+ |+
T Consensus 2 ~fsp~G~l~QvEYa 15 (221)
T d1yara1 2 VFSPDGRLFQVEYA 15 (221)
T ss_dssp CCCTTSCCHHHHHH
T ss_pred eECCCCcchHHHHH
Confidence 7999999985 74
No 20
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.03 E-value=14 Score=24.49 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=20.6
Q ss_pred chhhhhhhhhcccCcceeeeeecCCCC
Q 028911 27 GLLKKAFELSVLCDAEVALIIFSPRGK 53 (202)
Q Consensus 27 GL~KKA~ELsvLCda~valivfs~~gk 53 (202)
.+-.=|-+++.-++|. |+|||+.+|.
T Consensus 15 aia~sav~~A~~l~a~-aIvv~T~sG~ 40 (134)
T d2vgba3 15 VTAIGAVEAAFKCCAA-AIIVLTTTGR 40 (134)
T ss_dssp HHHHHHHHHHHHHTCS-EEEEECSSSH
T ss_pred HHHHHHHHHHHhCCCC-EEEEEcCCcH
Confidence 3445578889889998 5999999986
No 21
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.89 E-value=7.9 Score=28.52 Aligned_cols=22 Identities=18% Similarity=0.587 Sum_probs=17.4
Q ss_pred cccCcceeeeeecCCCCccc--cc
Q 028911 37 VLCDAEVALIIFSPRGKLYE--FS 58 (202)
Q Consensus 37 vLCda~valivfs~~gk~~~--~~ 58 (202)
+=.|-|-.+=+|||+|++++ |+
T Consensus 3 ~~~~yd~~~t~Fsp~Grl~QvEYa 26 (245)
T d1irug_ 3 IGTGYDLSASTFSPDGRVFQVEYA 26 (245)
T ss_dssp CCSSTTSCTTCCCTTSCCHHHHHH
T ss_pred CccccCCCCceECCCCeehHHHHH
Confidence 44577788889999999985 63
No 22
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.81 E-value=7.3 Score=28.39 Aligned_cols=18 Identities=28% Similarity=0.761 Sum_probs=13.5
Q ss_pred ceeeeeecCCCCccc--ccc
Q 028911 42 EVALIIFSPRGKLYE--FSS 59 (202)
Q Consensus 42 ~valivfs~~gk~~~--~~s 59 (202)
|-.+-+|||+|++|+ |+.
T Consensus 6 d~~~t~FspdGrl~QvEyA~ 25 (233)
T d1rypf_ 6 DGDTVTFSPTGRLFQVEYAL 25 (233)
T ss_dssp SSCTTCCCTTSCCHHHHHHH
T ss_pred cCCCceECCCCcChHHHHHH
Confidence 345567999999995 764
No 23
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.81 E-value=44 Score=24.96 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=23.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 028911 114 DGLEPCTIDELQQLENQLERSLSRIRA 140 (202)
Q Consensus 114 e~L~~Ls~~EL~~Le~~Le~~L~~Ir~ 140 (202)
+.=-+|+++|+..+|......|.++|.
T Consensus 233 DeW~gmTmedIR~~E~e~q~~L~~~~~ 259 (269)
T d1t27a_ 233 DKWVDLTMDDIRRMEEETKRQLDEMRQ 259 (269)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 444679999999999999999988775
No 24
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.50 E-value=9.2 Score=25.08 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=8.9
Q ss_pred hhhcccCccee
Q 028911 34 ELSVLCDAEVA 44 (202)
Q Consensus 34 ELsvLCda~va 44 (202)
+||+|||+|=+
T Consensus 8 dl~iL~G~DY~ 18 (120)
T d1b43a1 8 ELAILVGTDYN 18 (120)
T ss_dssp HHHHHHCCTTS
T ss_pred HHHHHhCCCCC
Confidence 78999998843
Done!