Citrus Sinensis ID: 028913

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRIAMQMIEELLNWNCPISSPSSEI
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHcccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccccEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHcccccEEcccccccccccccccccccccccccHHHHHHcHHHHHHHccccccccccccccccccccEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mvqskkfrgvrqrqwgswvsEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNgqnaktnfpilkpnnpeaegtkgssynipekgFSELLNSKLRKCckdlspsltclrldndnshigvwqkragsrsgssWVMRVElgknkkaqnlenglpfpssrssptlvddeveagngredeDRIAMQMIEELLnwncpisspssei
Flexible Loop (DISEMBL)
mvqskkfrgvrqrqwgswvseirhpllKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSpsltclrldndnshigvwqkragsrsgssWVMRVELGknkkaqnlenglpfpssrssptlvDDEVEAGNGREDEDRIAMQMIEEllnwncpisspssei
Low Complexity Region (SEG)
MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETaeaaaraydqaaVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRIAMQMIEELLNWNCPISSPSSEI
Disordered region (IsUnstruct)
*********VRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQ********************************ELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQK***********************************************************QMIEELLNWNC*********
Disordered Region (DISOPRED)
*****KF*GVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPI*******************************************************************************************************************IAMQMIEELLNWNC*********
Disordered Region (DISEMBL)
**************WGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQ**********WVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRIAMQMIEELLNWNCPISSPSSEI
Disordered Region (DISPRO)
****KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPIL*********************FSELLNSKLRKCCKDLSPSLTCLRL*NDNSHI**WQK*******SSWV****************************************EDEDRIAMQMIEELLNWNCP********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRIAMQMIEELLNWNCPISSPSSEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q3E958	189	Ethylene-responsive trans	yes	no	0.935	1.0	0.608	4e-61
Q9LFN7	189	Ethylene-responsive trans	no	no	0.935	1.0	0.635	3e-56
Q9XI33	199	Ethylene-responsive trans	no	no	0.920	0.934	0.580	6e-56
Q94AW5	181	Ethylene-responsive trans	no	no	0.415	0.464	0.627	8e-25
P16146	164	Protein PPLZ02 OS=Lupinus	N/A	no	0.316	0.390	0.647	4e-19
Q9FK12	354	Ethylene-responsive trans	no	no	0.306	0.175	0.645	2e-17
Q9SVQ0	388	Ethylene-responsive trans	no	no	0.311	0.162	0.634	2e-17
Q9SIE4	261	Ethylene-responsive trans	no	no	0.752	0.582	0.358	3e-17
Q8H1E4	334	Ethylene-responsive trans	no	no	0.470	0.284	0.45	3e-17
O65665	272	Ethylene-responsive trans	no	no	0.475	0.352	0.441	9e-17

>sp|Q3E958|SHN3_ARATH Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1

 Score =  234 bits (596), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 147/202 (72%), Gaps = 13/202 (6%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MV SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAAVLMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGV 120
           NFP++K N   +     S+   P K  SELLN+KLRK CKD +P LTCLRLDND+SHIGV
Sbjct: 61  NFPVIKSNGSNSLEI-NSALRSP-KSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGV 118

Query: 121 WQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRI 180
           WQKRAGS++  +WV  VELG    A+      P     ++   V +E       +++D++
Sbjct: 119 WQKRAGSKTSPNWVKLVELGDKVNAR------PGGDIETNKMKVRNE-----DVQEDDQM 167

Query: 181 AMQMIEELLNWNCPISSPSSEI 202
           AMQMIEELLNW CP S   +++
Sbjct: 168 AMQMIEELLNWTCPGSGSIAQV 189

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFN7|SHN2_ARATH Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1

 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 146/192 (76%), Gaps = 3/192 (1%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MV S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAA+LMNGQNAKT
Sbjct: 1   MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGV 120
           NFP++K           +S  +  K  SELLN+KLRK CKDL+PSLTCLRLD D+SHIGV
Sbjct: 61  NFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGV 120

Query: 121 WQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRI 180
           WQKRAGS++  +WVMR+ELG       ++ GL   ++ +   +  +E E      DED++
Sbjct: 121 WQKRAGSKTSPTWVMRLELGNVVNESAVDLGL---TTMNKQNVEKEEEEEEAIISDEDQL 177

Query: 181 AMQMIEELLNWN 192
           AM+MIEELLNW+
Sbjct: 178 AMEMIEELLNWS 189

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI33|WIN1_ARATH Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1

 Score =  216 bits (551), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 119/205 (58%), Positives = 145/205 (70%), Gaps = 19/205 (9%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MVQ+KKFRGVRQR WGSWV+EIRHPLLKRR+WLGTFETAE AARAYD+AAVLM+G+NAKT
Sbjct: 1   MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query: 61  NFPILKPNNPEAEGTKGSS---------YNIPEKGFSELLNSKLRKCCKDLSPSLTCLRL 111
           NFP+   NN   E ++G +          +      S +L++KLRKCCK  SPSLTCLRL
Sbjct: 61  NFPL--NNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRL 118

Query: 112 DNDNSHIGVWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAG 171
           D  +SHIGVWQKRAGS+S SSWVM VELG    +Q   +     +S+ +      EVE G
Sbjct: 119 DTASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTS----KASQDAILAPTTEVEIG 174

Query: 172 NGRE----DEDRIAMQMIEELLNWN 192
             RE    +E+++A+QMIEELLN N
Sbjct: 175 GSREEVLDEEEKVALQMIEELLNTN 199

Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Confers drought resistance. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AW5|ERF03_ARATH Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1

 Score =  113 bits (283), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/94 (62%), Positives = 65/94 (69%), Gaps = 10/94 (10%)

Query: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPI 64
          ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFETAE AARAYD+AA LM G  A+TNFP 
Sbjct: 6  QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65

Query: 65 LKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKC 98
              NP A  T  S      K  S  L +KL KC
Sbjct: 66 ----NPNAIPTSSS------KLLSATLTAKLHKC 89

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P16146|PZ02_LUPPO Protein PPLZ02 OS=Lupinus polyphyllus GN=PPLZ02 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 4/68 (5%)

Query: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPI 64
          +++RG RQR WGSWVSEIRH +LK R+W GTFE+AE AARAYD+AA LM G  A+TNFP 
Sbjct: 6  QRYRGFRQRHWGSWVSEIRHSILKTRIWQGTFESAEDAARAYDEAARLMCGTRARTNFPY 65

Query: 65 LKPNNPEA 72
              NP A
Sbjct: 66 ----NPNA 69

Essential for all lupin cells independent of the respective tissue.

Lupinus polyphyllus (taxid: 3874)

>sp|Q9FK12|CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 46/62 (74%)

Query: 3   QSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNF 62
           Q KKFRGVRQR WG W +EIR P  +RR+WLGTFETAE AA  YD AA+ + G +A TNF
Sbjct: 121 QIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180

Query: 63  PI 64
            I
Sbjct: 181 SI 182

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVQ0|ERF62_ARATH Ethylene-responsive transcription factor ERF062 OS=Arabidopsis thaliana GN=ERF062 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 47/63 (74%)

Query: 4   SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFP 63
           +K +RGVRQR WG WV+EIR P  + RVWLGTFETAE AA AYD AA ++ G+ A  NFP
Sbjct: 229 TKLYRGVRQRHWGKWVAEIRLPRNRTRVWLGTFETAEQAAMAYDTAAYILRGEFAHLNFP 288

Query: 64  ILK 66
            LK
Sbjct: 289 DLK 291

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIE4|ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 85/173 (49%), Gaps = 21/173 (12%)

Query: 7   FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFP--I 64
           +RGVRQR WG WV+EIR P  + R+WLGTFETAE AA AYDQAA  + G  AK NFP  I
Sbjct: 71  YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLI 130

Query: 65  LKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGVWQKR 124
            +  NP           +P       +++KL+  CK L  +     + +      V+   
Sbjct: 131 HEDMNP-----------LPSS-----VDTKLQAICKSLRKTEEICSVSDQTKEYSVY--- 171

Query: 125 AGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDE 177
           + S     ++ + EL   K+     N L   S RS  T + DE +A     D+
Sbjct: 172 SVSDKTELFLPKAELFLPKREHLETNELSNESPRSDETSLLDESQAEYSSSDK 224

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1E4|RAP24_ARATH Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 60/100 (60%), Gaps = 5/100 (5%)

Query: 4   SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFP 63
           +K +RGVRQR WG WV+EIR P  + R+WLGTF+TAE AA AYD+AA  + G  A+ NFP
Sbjct: 149 TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 208

Query: 64  ILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLS 103
            L+ N     G  G       K     +++KL   CK ++
Sbjct: 209 NLRHNGSHIGGDFGEY-----KPLHSSVDAKLEAICKSMA 243

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O65665|ERF60_ARATH Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 6/102 (5%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           M   K +RGVRQR WG WV+EIR P  + R+WLGTF+TAE AA AYD AA  + G+ A+ 
Sbjct: 87  MTAQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARL 146

Query: 61  NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDL 102
           NFP  +  +    G  GS +N         +++KL++ C+ L
Sbjct: 147 NFPQFRHEDGYYGG--GSCFN----PLHSSVDAKLQEICQSL 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
449437136	194	PREDICTED: ethylene-responsive transcrip	0.945	0.984	0.669	2e-67
224142619	206	AP2/ERF domain-containing transcription	0.950	0.932	0.665	2e-62
225430283	194	PREDICTED: ethylene-responsive transcrip	0.915	0.953	0.678	3e-62
224143142	178	AP2/ERF domain-containing transcription	0.871	0.988	0.721	2e-60
356565177	214	PREDICTED: ethylene-responsive transcrip	0.950	0.897	0.645	5e-60
255567035	229	DNA binding protein, putative [Ricinus c	0.970	0.855	0.593	9e-60
15239413	189	ethylene-responsive transcription factor	0.935	1.0	0.608	2e-59
297812745	189	hypothetical protein ARALYDRAFT_326806 [	0.935	1.0	0.603	8e-59
356546164	213	PREDICTED: ethylene-responsive transcrip	0.940	0.892	0.630	1e-58
356515442	185	PREDICTED: ethylene-responsive transcrip	0.915	1.0	0.666	2e-58

>gi|449437136|ref|XP_004136348.1| PREDICTED: ethylene-responsive transcription factor SHINE 3-like [Cucumis sativus] gi|449503530|ref|XP_004162048.1| PREDICTED: ethylene-responsive transcription factor SHINE 3-like [Cucumis sativus]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/203 (66%), Positives = 156/203 (76%), Gaps = 12/203 (5%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MV S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LMNGQNAKT
Sbjct: 1   MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGV 120
           NFP  K ++ EA    GSS   P K  SELL++KLRKCCK+ SPSLTCLRLD DN+HIGV
Sbjct: 61  NFPASKDHSEEASHGHGSSPMSP-KALSELLSTKLRKCCKNPSPSLTCLRLDCDNAHIGV 119

Query: 121 WQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAG---NGREDE 177
           WQKRAG+R+ S+WVMR+ELGK +        +P P S S     D + +     N  ++E
Sbjct: 120 WQKRAGTRATSNWVMRIELGKKE--------VPSPESTSQEADGDGDGDGDDHQNEIDEE 171

Query: 178 DRIAMQMIEELLNWNCPISSPSS 200
           DRIAMQMIEELLNWNCP+ S SS
Sbjct: 172 DRIAMQMIEELLNWNCPLPSTSS 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142619|ref|XP_002324652.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222866086|gb|EEF03217.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/200 (66%), Positives = 158/200 (79%), Gaps = 8/200 (4%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MVQSKKFRGVRQR WGSWVSEIRHPLLKRRVWLGTFETAE AARAYDQAA+LM+G+NAKT
Sbjct: 1   MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKT 60

Query: 61  NFPILKPNNPE-AEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIG 119
           NFPI + +N E  + +  +S   P  G SE+L++KLRKC K  SPS+TCLRLD +NS IG
Sbjct: 61  NFPIPQTSNEEDPKSSDEASLPTPPNGLSEILHAKLRKCSKAPSPSMTCLRLDTENSLIG 120

Query: 120 VWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDR 179
           VWQKRAG RS S+WVMRV+LG+ +++Q  E+ LP P  +SS  + + E+ A  G EDE R
Sbjct: 121 VWQKRAGERSDSNWVMRVQLGQ-RESQVSESTLPLP--QSSGGVSEPELRAEMG-EDE-R 175

Query: 180 IAMQMIEELLNWNCPISSPS 199
           IA+QMIEELLN NCP  SPS
Sbjct: 176 IALQMIEELLNRNCP--SPS 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430283|ref|XP_002285107.1| PREDICTED: ethylene-responsive transcription factor SHINE 3-like [Vitis vinifera]

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 133/196 (67%), Positives = 153/196 (78%), Gaps = 11/196 (5%)

Query: 4   SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFP 63
           +KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFE+AEAAARAYDQAA+LMNGQNAKTNFP
Sbjct: 5   TKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFESAEAAARAYDQAAILMNGQNAKTNFP 64

Query: 64  ILKPNNPEAEGTKGSSYN----IPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIG 119
           ++K +  E + + G+ +     +  K  SE+L +KLRKCCKD SPSLTCLRLD DNSH+G
Sbjct: 65  VVKNDQGEVKSSAGTDHEDESPLSRKALSEILTTKLRKCCKDPSPSLTCLRLDTDNSHLG 124

Query: 120 VWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGRE-DED 178
           VWQKRAG+RSGSSWVMRVELGK     + EN   F  S           EAG+G + +ED
Sbjct: 125 VWQKRAGTRSGSSWVMRVELGKKDGQVSDENSSSFLRSPRGG------AEAGDGVDGEED 178

Query: 179 RIAMQMIEELLNWNCP 194
           R+AMQMIEELLNWNCP
Sbjct: 179 RMAMQMIEELLNWNCP 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143142|ref|XP_002324859.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|118486668|gb|ABK95171.1| unknown [Populus trichocarpa] gi|222866293|gb|EEF03424.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/194 (72%), Positives = 153/194 (78%), Gaps = 18/194 (9%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAA+LMNGQNAKT
Sbjct: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCC-KDLSPSLTCLRLDNDNSHIG 119
           NFP    +     G K ++  +P K  +ELLNSKLRKCC KD SPSLTCLRLDNDNSHIG
Sbjct: 61  NFPTSHLDQDTNLG-KDNNSPLPAKALAELLNSKLRKCCGKDPSPSLTCLRLDNDNSHIG 119

Query: 120 VWQKRAGSRSGSSWVMRVELGK-NKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDED 178
           VWQK+AGSRS S+WVM+VELG  NKK +            SSPT+   E+E  NG E+ED
Sbjct: 120 VWQKKAGSRSSSNWVMKVELGNYNKKTE------------SSPTV---EIEPENGTEEED 164

Query: 179 RIAMQMIEELLNWN 192
           RIAMQMIEELLN N
Sbjct: 165 RIAMQMIEELLNRN 178

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565177|ref|XP_003550820.1| PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max]

 Score =  236 bits (601), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 131/203 (64%), Positives = 150/203 (73%), Gaps = 11/203 (5%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MVQSKKFRGVRQR WGSWVSEIRHPLLKRRVWLGTFETAE AARAYDQAA+LM+G+NAKT
Sbjct: 1   MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIP---EKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSH 117
           NFPI +   PE +    +S + P    K   E+L++KLRKC K  SPS+TCLRLD +NSH
Sbjct: 61  NFPITQ--TPEGDPKSTTSEDTPSTTSKDLEEILHAKLRKCGKVPSPSMTCLRLDPENSH 118

Query: 118 IGVWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDE 177
           IGVWQKRAG RS S+WVM V+LG  KK+ N+ N      + SS  L   EV  G   E E
Sbjct: 119 IGVWQKRAGRRSDSNWVMTVQLG--KKSVNVNNNDTHHQADSSSNLHHQEVVRGEIDE-E 175

Query: 178 DRIAMQMIEELLN-WNCPISSPS 199
           +RIA+QMIEELLN  NCP  SPS
Sbjct: 176 ERIALQMIEELLNDRNCP--SPS 196

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567035|ref|XP_002524500.1| DNA binding protein, putative [Ricinus communis] gi|223536288|gb|EEF37940.1| DNA binding protein, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 127/214 (59%), Positives = 152/214 (71%), Gaps = 18/214 (8%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MVQSKKFRGVRQR WGSWVSEIRHPLLKRR+WLGTFETAE AARAYDQAA+LM+G+NAKT
Sbjct: 1   MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGRNAKT 60

Query: 61  NFPILKPNNPEAE------------GTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTC 108
           NFPI +  N + +             +K ++      G SE+L++KLRKC K  SPS+TC
Sbjct: 61  NFPITQTPNGDPKSSTADSSTTATSSSKNTATTTAPNGLSEILHAKLRKCSKTPSPSMTC 120

Query: 109 LRLDNDNSHIGVWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEV 168
           LRLD +NSHIGVWQKRAG RS S+WVM V+LG  K+   +  G  FP + SS TL     
Sbjct: 121 LRLDTENSHIGVWQKRAGQRSDSNWVMTVQLG--KQNHEVSEGT-FPMAESSNTL-PGPP 176

Query: 169 EAGNGREDEDRIAMQMIEELLNWNCPISSPSSEI 202
           E     ++E+RIA+QMIEELLN NCP  SP  E+
Sbjct: 177 ELRTQMDEEERIALQMIEELLNRNCP--SPPFEV 208

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239413|ref|NP_197921.1| ethylene-responsive transcription factor SHINE 3 [Arabidopsis thaliana] gi|122214280|sp|Q3E958.1|SHN3_ARATH RecName: Full=Ethylene-responsive transcription factor SHINE 3 gi|332006052|gb|AED93435.1| ethylene-responsive transcription factor SHINE 3 [Arabidopsis thaliana]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 147/202 (72%), Gaps = 13/202 (6%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MV SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAAVLMNGQ+AKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGV 120
           NFP++K N   +     S+   P K  SELLN+KLRK CKD +P LTCLRLDND+SHIGV
Sbjct: 61  NFPVIKSNGSNSLEI-NSALRSP-KSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGV 118

Query: 121 WQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRI 180
           WQKRAGS++  +WV  VELG    A+      P     ++   V +E       +++D++
Sbjct: 119 WQKRAGSKTSPNWVKLVELGDKVNAR------PGGDIETNKMKVRNE-----DVQEDDQM 167

Query: 181 AMQMIEELLNWNCPISSPSSEI 202
           AMQMIEELLNW CP S   +++
Sbjct: 168 AMQMIEELLNWTCPGSGSIAQV 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812745|ref|XP_002874256.1| hypothetical protein ARALYDRAFT_326806 [Arabidopsis lyrata subsp. lyrata] gi|297320093|gb|EFH50515.1| hypothetical protein ARALYDRAFT_326806 [Arabidopsis lyrata subsp. lyrata]

 Score =  232 bits (591), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 148/202 (73%), Gaps = 13/202 (6%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MV SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+TAE AARAYDQAA+LMNGQNAKT
Sbjct: 1   MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAILMNGQNAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGV 120
           NFPI+K N  ++ G   S+   P K  SELLN+KLRK CKD +P LTCLRLDND+SHIGV
Sbjct: 61  NFPIIKSNGSDSLGV-NSTLRSP-KSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGV 118

Query: 121 WQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRI 180
           WQ RAGS++  +WV  VEL     + N   G    +++      +D+V      +++D++
Sbjct: 119 WQNRAGSKTSPNWVKLVEL---DDSVNARPGGDIGTNKMKKR--NDDV------QEDDQM 167

Query: 181 AMQMIEELLNWNCPISSPSSEI 202
           AMQMIEELLNW  P S   +++
Sbjct: 168 AMQMIEELLNWTGPASGSIAQV 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546164|ref|XP_003541501.1| PREDICTED: ethylene-responsive transcription factor WIN1-like [Glycine max]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 147/203 (72%), Gaps = 13/203 (6%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MVQSKKFRGVRQR WGSWVSEIRHPLLKRRVWLGTFETAE AARAYDQAA+LM+G+NAKT
Sbjct: 1   MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIP---EKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSH 117
           NFPI +   PE +    +S + P    K   E+L++KLRKC K  SPS+TCLRLD +NSH
Sbjct: 61  NFPITQ--TPEGDPKSTNSEDTPSTTSKDLEEILHAKLRKCSKVPSPSMTCLRLDTENSH 118

Query: 118 IGVWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDE 177
           IGVWQKRAG RS S+WVM V+LGK    + + N     +  SS      EV  G   E E
Sbjct: 119 IGVWQKRAGRRSDSNWVMTVQLGK----KTVNNNETHQADSSSNLHHHQEVVRGEIDE-E 173

Query: 178 DRIAMQMIEELLN-WNCPISSPS 199
           +RIA+QMIEELLN  NCP  SPS
Sbjct: 174 ERIALQMIEELLNDRNCP--SPS 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515442|ref|XP_003526409.1| PREDICTED: ethylene-responsive transcription factor SHINE 3-like [Glycine max]

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 147/192 (76%), Gaps = 7/192 (3%)

Query: 1   MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKT 60
           MVQ+KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAA+LMNGQNAKT
Sbjct: 1   MVQTKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKT 60

Query: 61  NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGV 120
           NFP  K N  EA+    +   +  K  SELL++KLRK CKD +PSLTCLRLD DNSHIGV
Sbjct: 61  NFPTSK-NQAEADDNNNTDTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGV 119

Query: 121 WQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRI 180
           WQK AG  SGS+WVMR+ELGK +  +        P S ++    ++EV      E+EDR+
Sbjct: 120 WQKGAGPHSGSNWVMRLELGKKQITEEGSESTESPQSSTNGATENNEV------EEEDRV 173

Query: 181 AMQMIEELLNWN 192
           A+QMIEELLNWN
Sbjct: 174 ALQMIEELLNWN 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2148022	189	SHN2 "shine2" [Arabidopsis tha	0.935	1.0	0.572	1.9e-53
TAIR|locus:2145477	189	SHN3 "shine3" [Arabidopsis tha	0.935	1.0	0.564	9.2e-52
TAIR|locus:2037698	199	SHN1 "SHINE 1" [Arabidopsis th	0.930	0.944	0.541	1.2e-49
TAIR|locus:2146985	181	ESE3 "ethylene and salt induci	0.415	0.464	0.521	5.2e-21
TAIR|locus:2201103	230	DREB26 "dehydration response e	0.292	0.256	0.457	4.9e-14
TAIR|locus:2154272	354	CRF3 "AT5G53290" [Arabidopsis	0.346	0.197	0.492	3.4e-13
TAIR|locus:2136078	287	CRF1 "AT4G11140" [Arabidopsis	0.405	0.285	0.409	9.2e-13
TAIR|locus:2029491	334	RAP2.4 "related to AP2 4" [Ara	0.470	0.284	0.37	2.2e-12
TAIR|locus:2135282	272	AT4G39780 [Arabidopsis thalian	0.475	0.352	0.362	2.6e-12
TAIR|locus:2087065	222	ERF4 "ethylene responsive elem	0.287	0.261	0.465	3.6e-12

TAIR|locus:2148022 SHN2 "shine2" [Arabidopsis thaliana (taxid:3702)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 110/192 (57%), Positives = 134/192 (69%)

Query:     1 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKT 60
             MV S+KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFET            +LMNGQNAKT
Sbjct:     1 MVHSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKT 60

Query:    61 NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGV 120
             NFP++K           +S  +  K  SELLN+KLRK CKDL+PSLTCLRLD D+SHIGV
Sbjct:    61 NFPVVKSEEGSDHVKDVNSPLMSPKSLSELLNAKLRKSCKDLTPSLTCLRLDTDSSHIGV 120

Query:   121 WQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRI 180
             WQKRAGS++  +WVMR+ELG       ++ GL   ++ +   +  +E E      DED++
Sbjct:   121 WQKRAGSKTSPTWVMRLELGNVVNESAVDLGL---TTMNKQNVEKEEEEEEAIISDEDQL 177

Query:   181 AMQMIEELLNWN 192
             AM+MIEELLNW+
Sbjct:   178 AMEMIEELLNWS 189

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2145477 SHN3 "shine3" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 114/202 (56%), Positives = 137/202 (67%)

Query:     1 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKT 60
             MV SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTF+T            VLMNGQ+AKT
Sbjct:     1 MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT 60

Query:    61 NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDNDNSHIGV 120
             NFP++K N   +     S+   P K  SELLN+KLRK CKD +P LTCLRLDND+SHIGV
Sbjct:    61 NFPVIKSNGSNSLEIN-SALRSP-KSLSELLNAKLRKNCKDQTPYLTCLRLDNDSSHIGV 118

Query:   121 WQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNGREDEDRI 180
             WQKRAGS++  +WV  VELG    A+      P     ++   V +E    + +ED D++
Sbjct:   119 WQKRAGSKTSPNWVKLVELGDKVNAR------PGGDIETNKMKVRNE----DVQED-DQM 167

Query:   181 AMQMIEELLNWNCPISSPSSEI 202
             AMQMIEELLNW CP S   +++
Sbjct:   168 AMQMIEELLNWTCPGSGSIAQV 189

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2037698 SHN1 "SHINE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 110/203 (54%), Positives = 134/203 (66%)

Query:     1 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKT 60
             MVQ+KKFRGVRQR WGSWV+EIRHPLLKRR+WLGTFET            VLM+G+NAKT
Sbjct:     1 MVQTKKFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKT 60

Query:    61 NFPILKPNNPE-AEG------TKGSSYNIPEKGFSELLNSKLRKCCKDLSPSLTCLRLDN 113
             NFP+   N  E +EG      +   S +      S +L++KLRKCCK  SPSLTCLRLD 
Sbjct:    61 NFPLNNNNTGETSEGKTDISASSTMSSSTSSSSLSSILSAKLRKCCKSPSPSLTCLRLDT 120

Query:   114 DNSHIGVWQKRAGSRSGSSWVMRVELGKNKKAQNLENGLPFPSSRSSPTLVDDEVEAGNG 173
              +SHIGVWQKRAGS+S SSWVM VELG    +Q   +     +S+ +      EVE G  
Sbjct:   121 ASSHIGVWQKRAGSKSDSSWVMTVELGPASSSQETTS----KASQDAILAPTTEVEIGGS 176

Query:   174 RED----EDRIAMQMIEELLNWN 192
             RE+    E+++A+QMIEELLN N
Sbjct:   177 REEVLDEEEKVALQMIEELLNTN 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010166 "wax metabolic process" evidence=IMP

GO:0010143 "cutin biosynthetic process" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2146985 ESE3 "ethylene and salt inducible 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 49/94 (52%), Positives = 54/94 (57%)

Query:     5 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFPI 64
             ++FRGVRQR WGSWVSEIRHPLLK R+WLGTFET             LM G  A+TNFP 
Sbjct:     6 QRFRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPY 65

Query:    65 LKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKC 98
                 NP A  T  S      K  S  L +KL KC
Sbjct:    66 ----NPNAIPTSSS------KLLSATLTAKLHKC 89

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2201103 DREB26 "dehydration response element-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 27/59 (45%), Positives = 34/59 (57%)

Query:     5 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFP 63
             KK++GVR R WGSWVSEIR P  K R+WLG++ T            + + G  A  NFP
Sbjct:    48 KKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFP 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2154272 CRF3 "AT5G53290" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 35/71 (49%), Positives = 41/71 (57%)

Query:     3 QSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNF 62
             Q KKFRGVRQR WG W +EIR P  +RR+WLGTFET            + + G +A TNF
Sbjct:   121 QIKKFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180

Query:    63 PILKPNNPEAE 73
              I  P   E E
Sbjct:   181 SI-PPQEEEEE 190

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2136078 CRF1 "AT4G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 9.2e-13, P = 9.2e-13
 Identities = 36/88 (40%), Positives = 49/88 (55%)

Query:     4 SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFP 63
             ++KFRGVRQR WG W +EIR P  + RVWLGTF+T            + + G NA+ NFP
Sbjct:    84 TRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143

Query:    64 ILKPNNPEAEGTKGSSYNIPEKGFSELL 91
                P  P  E  + +S  +  KG S+ +
Sbjct:   144 --PP--PVTENVEEASTEV--KGVSDFI 165

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=RCA;IMP

GO:0048825 "cotyledon development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2029491 RAP2.4 "related to AP2 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 37/100 (37%), Positives = 51/100 (51%)

Query:     4 SKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFP 63
             +K +RGVRQR WG WV+EIR P  + R+WLGTF+T              + G  A+ NFP
Sbjct:   149 TKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFP 208

Query:    64 ILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDLS 103
              L+ N     G  G  Y    K     +++KL   CK ++
Sbjct:   209 NLRHNGSHIGGDFGE-Y----KPLHSSVDAKLEAICKSMA 243

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP;IMP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IGI

GO:0009611 "response to wounding" evidence=IEP

GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0009409 "response to cold" evidence=IEP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2135282 AT4G39780 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 2.6e-12, P = 2.6e-12
 Identities = 37/102 (36%), Positives = 54/102 (52%)

Query:     1 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKT 60
             M   K +RGVRQR WG WV+EIR P  + R+WLGTF+T              + G+ A+ 
Sbjct:    87 MTAQKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARL 146

Query:    61 NFPILKPNNPEAEGTKGSSYNIPEKGFSELLNSKLRKCCKDL 102
             NFP  +  +    G  GS +N P       +++KL++ C+ L
Sbjct:   147 NFPQFRHEDGYYGG--GSCFN-P---LHSSVDAKLQEICQSL 182

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2087065 ERF4 "ethylene responsive element binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 27/58 (46%), Positives = 33/58 (56%)

Query:     6 KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFP 63
             ++RGVR+R WG + +EIR P  K RVWLGTF+T                G  AKTNFP
Sbjct:    24 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3E958	SHN3_ARATH	No assigned EC number	0.6089	0.9356	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-31
pfam00847	53	pfam00847, AP2, AP2 domain	4e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  116 bits (292), Expect = 2e-34
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query: 6  KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPIL 65
          K+RGVRQR WG WV+EIR P   +RVWLGTF+TAE AARAYD+AA    G++A+ NFP  
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 66 KPNN 69
            ++
Sbjct: 61 LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  108 bits (272), Expect = 2e-31
 Identities = 38/61 (62%), Positives = 46/61 (75%)

Query: 5  KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPI 64
           K+RGVRQR WG WV+EIR P   RR+WLGTF+TAE AARAYD+AA+ + G +A  NFP 
Sbjct: 1  SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

Query: 65 L 65
           
Sbjct: 61 S 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 58.4 bits (142), Expect = 4e-12
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 5  KKFRGVRQR-QWGSWVSEIRHP--LLKRRVWLGTFETAEAAARAYDQAAVLMNG 55
            ++GVR   +WG WV+EIR P    K+R  LGTF T E AARA   A + + G
Sbjct: 1  SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.85
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
PHA00280	121	putative NHN endonuclease	99.38
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.15
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	82.59

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.85  E-value=1.8e-21  Score=137.28  Aligned_cols=63  Identities=60%  Similarity=1.056  Sum_probs=60.1

Q ss_pred             CeeeeeECCCCeEEEEeeeCCCCeEEecCCcchHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 028913            6 KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPILKPN   68 (202)
Q Consensus         6 kyRGVr~r~~GkW~A~I~~~~~~k~i~LGtFdT~EeAA~AYD~AA~k~~G~~A~tNFP~~~~~   68 (202)
                      +|+||+++++|||+|+|+++..++++|||+|+|+||||.|||.|+++++|.++.+|||.+.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            699998888999999999977799999999999999999999999999999999999999886

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=1.9e-21  Score=135.53  Aligned_cols=61  Identities=62%  Similarity=1.083  Sum_probs=58.1

Q ss_pred             CCeeeeeECCCCeEEEEeeeCCCCeEEecCCcchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 028913            5 KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPIL   65 (202)
Q Consensus         5 SkyRGVr~r~~GkW~A~I~~~~~~k~i~LGtFdT~EeAA~AYD~AA~k~~G~~A~tNFP~~   65 (202)
                      |+||||+++++|||+|+|+++..++++|||+|+|+||||.|||.|+++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            7899999888999999999987799999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.38  E-value=7.3e-13  Score=105.33  Aligned_cols=53  Identities=15%  Similarity=0.298  Sum_probs=48.5

Q ss_pred             CCCeeeee-ECCCCeEEEEeeeCCCCeEEecCCcchHHHHHHHHHHHHHHhcCCCCC
Q 028913            4 SKKFRGVR-QRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAVLMNGQNAK   59 (202)
Q Consensus         4 sSkyRGVr-~r~~GkW~A~I~~~~~~k~i~LGtFdT~EeAA~AYD~AA~k~~G~~A~   59 (202)
                      +|+|+||+ +...|||+|+|...  ||+++||.|+++|+|+.||+ ++.++||.||.
T Consensus        66 ~SG~kGV~~~k~~~kw~A~I~~~--gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         66 TSGLKGLSWSKEREMWRGTVTAE--GKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCeeEEecCCCeEEEEEEEC--CEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            69999995 66789999999997  99999999999999999997 78899999884

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.15  E-value=9.2e-11  Score=79.68  Aligned_cols=52  Identities=29%  Similarity=0.484  Sum_probs=44.7

Q ss_pred             CCeeeee-ECCCCeEEEEeeeCCC---CeEEecCCcchHHHHHHHHHHHHHHhcCC
Q 028913            5 KKFRGVR-QRQWGSWVSEIRHPLL---KRRVWLGTFETAEAAARAYDQAAVLMNGQ   56 (202)
Q Consensus         5 SkyRGVr-~r~~GkW~A~I~~~~~---~k~i~LGtFdT~EeAA~AYD~AA~k~~G~   56 (202)
                      |+|+||+ .+..++|+|+|++...   +++++||.|+++++|++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899995 5558999999998321   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=82.59  E-value=5.3  Score=26.04  Aligned_cols=38  Identities=13%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             eEEEEee--eCCCC--eEEecCCcchHHHHHHHHHHHHHHhc
Q 028913           17 SWVSEIR--HPLLK--RRVWLGTFETAEAAARAYDQAAVLMN   54 (202)
Q Consensus        17 kW~A~I~--~~~~~--k~i~LGtFdT~EeAA~AYD~AA~k~~   54 (202)
                      +|..+|.  ++..|  ++++-+.|.|..||-.+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  43234  67888999999999999988776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-08
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		4e-08

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 2  VQSKKFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFETXXXXXXXXXXXXVLMNGQNAKT 60
           + K +RGVRQR WG + +EIR P     RVWLGTFET              M G  A  
Sbjct: 1  AKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALL 60
Query: 61 NFPI 64
          NFP+
Sbjct: 61 NFPL 64

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/61 (45%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5  KKFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFETXXXXXXXXXXXXVLMNGQNAKTNFP 63
          K +RGVRQR WG + +EIR P     RVWLGTFET              M G  A  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 64 I 64
          +
Sbjct: 61 L 61
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-31

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  108 bits (273), Expect = 1e-31
 Identities = 37/61 (60%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 5  KKFRGVRQRQWGSWVSEIRHPLLKR-RVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFP 63
          K +RGVRQR WG + +EIR P     RVWLGTFETAE AA AYD+AA  M G  A  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 64 I 64
          +
Sbjct: 61 L 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.76

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=8.1e-25  Score=154.32  Aligned_cols=61  Identities=61%  Similarity=0.994  Sum_probs=57.2

Q ss_pred             CCeeeeeECCCCeEEEEeeeCCC-CeEEecCCcchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 028913            5 KKFRGVRQRQWGSWVSEIRHPLL-KRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPIL   65 (202)
Q Consensus         5 SkyRGVr~r~~GkW~A~I~~~~~-~k~i~LGtFdT~EeAA~AYD~AA~k~~G~~A~tNFP~~   65 (202)
                      .+||||++++||||+|+|+++.. ++++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            37999998889999999999864 69999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.76  E-value=0.28  Score=35.52  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=19.7

Q ss_pred             CCCCeeee-eECCCCeEEEEeeeC
Q 028913            3 QSKKFRGV-RQRQWGSWVSEIRHP   25 (202)
Q Consensus         3 rsSkyRGV-r~r~~GkW~A~I~~~   25 (202)
                      .+|+|.|| +....+.|.|+-.++
T Consensus         4 ~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            4 MSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCcEEeecCCceEEEEEecC
Confidence            57999999 566689999998886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	7e-29

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  100 bits (251), Expect = 7e-29
 Identities = 37/61 (60%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 5  KKFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFP 63
          K +RGVRQR WG + +EIR P     RVWLGTFETAE AA AYD+AA  M G  A  NFP
Sbjct: 1  KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Query: 64 I 64
          +
Sbjct: 61 L 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=5e-25  Score=154.18  Aligned_cols=60  Identities=60%  Similarity=0.988  Sum_probs=55.8

Q ss_pred             CeeeeeECCCCeEEEEeeeCC-CCeEEecCCcchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 028913            6 KFRGVRQRQWGSWVSEIRHPL-LKRRVWLGTFETAEAAARAYDQAAVLMNGQNAKTNFPIL   65 (202)
Q Consensus         6 kyRGVr~r~~GkW~A~I~~~~-~~k~i~LGtFdT~EeAA~AYD~AA~k~~G~~A~tNFP~~   65 (202)
                      +||||+++++|||+|+|+++. .++++|||+|+|+||||+|||.|+++++|.++.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            699999888999999999864 458999999999999999999999999999999999975