BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028915
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 31/116 (26%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+EF
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFDSSKDRNDPFEFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGY 190
+GG + E V +GMKVGG R + +PP+ GY
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGY 185
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 31/116 (26%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFGSSKDRNDPFAFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGY 190
+GG + E V +GMKVGG R + +PP+ GY
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGY 185
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 31/116 (26%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFDSSKDRNDPFAFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGY 190
+GG + E V +GMKVGG R + +PP+ GY
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGY 185
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 31/116 (26%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFDSSKDRNDPFAFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGY 190
+GG + E V +GMKVGG R + +PP+ GY
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGY 185
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 31/116 (26%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFDSSKDRNDPFAFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGY 190
+GG + E V +GMKVGG R + +PP+ GY
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGY 185
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 31/119 (26%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 5 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFDSSKDRNDPFAFV 56
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKK 193
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 57 LGGGHVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGAR 92
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 31/119 (26%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 25 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFDSSKDRNDPFAFV 76
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKK 193
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 77 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGAR 112
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 31/119 (26%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 9 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFDSSKDRNDPFAFV 60
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKK 193
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 61 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGAR 96
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 31/113 (27%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 5 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWL--------TDGQKFDSSKDRNDPFAFV 56
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPE 187
+GG + E V +GMKVGG R + +PP+
Sbjct: 57 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQ 86
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 29/124 (23%)
Query: 72 DYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRES-KLLAGNRSIAEP 130
++ + GL + D V G GP A KG ++ H+ V E+ K+ + + +P
Sbjct: 6 EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHY---------VGKLENGKVFDSSYNRGKP 56
Query: 131 YEFKVGGPPGKERKREFVDNQN-GLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAG 189
F++G E + + G+ + P M GGKRT+ +PPE
Sbjct: 57 LTFRIG-------VGEVIKGWDQGILGSDGIPP-----------MLTGGKRTLRIPPELA 98
Query: 190 YDKK 193
Y +
Sbjct: 99 YGDR 102
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 172 EGMKVGGKRTVIVPPEAGYDKKRMNEIP 199
+GM VG KR +I+PP GY K+ +IP
Sbjct: 80 KGMCVGEKRKLIIPPALGYGKEGKGKIP 107
>pdb|1OSG|A Chain A, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|B Chain B, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|C Chain C, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|D Chain D, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|E Chain E, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|F Chain F, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|3V56|A Chain A, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|B Chain B, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|C Chain C, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|D Chain D, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|E Chain E, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|F Chain F, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide
Length = 208
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 57 SEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSR 116
+ ++ RNK+A+ + T D L+ I + + P QKGS V + F+ +A+ +
Sbjct: 47 NSSQNSRNKRAVQGPEETVTQDCLQL--IADSETPTIQKGSYTFVPWLLSFKRGSALEEK 104
Query: 117 ESKLL 121
E+K+L
Sbjct: 105 ENKIL 109
>pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|B Chain B, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|C Chain C, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|D Chain D, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
Length = 549
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 18 PQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTS 77
P+ TT+ + + S ++ I LP + S+ +C +R ++ L YH+ S
Sbjct: 188 PESTTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSH--LMSYHSAS 245
Query: 78 DGLKYYDIVEGKGPVAQKGSTVQVHF 103
+ D+ G V +G Q F
Sbjct: 246 CVVVGEDVSVDDGKVVAEGLLAQFGF 271
>pdb|3OI8|A Chain A, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
pdb|3OI8|B Chain B, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
Length = 156
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 56 CSEARERRNKKAIPLEDYHTTSDGLKYYDIVE 87
E RE+RN AI +++Y TS + + DI+E
Sbjct: 125 LKEFREQRNHXAIVIDEYGGTSGLVTFEDIIE 156
>pdb|2L47|A Chain A, Solution Structure Of The Plyg Catalytic Domain
Length = 165
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 20 HTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDG 79
H + K+A+ IP+ R A A C + N+++I +E ++ S G
Sbjct: 54 HIAVDDKKAIQGIPLERNAWA---------------CGDGNGSGNRQSISVEICYSKSGG 98
Query: 80 LKYY 83
+YY
Sbjct: 99 DRYY 102
>pdb|4ATS|A Chain A, Structure Of The Orf273 Protein From The Acidianus Two-
Tailed Virus
Length = 293
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 55 KCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEG------KGPVAQKGSTVQVHFDCIFR 108
K +E RE ++ IP E+ T+D K DIVE + +K T++ + I R
Sbjct: 24 KITEEREFQSISEIPEEEIDATNDEEKLADIVENEIEKEIRKSKTRKCKTIENFYYYILR 83
Query: 109 G--ITAVSSRESKLLAGNRSIAEPYEF 133
I S + ++ G RS + Y F
Sbjct: 84 DGKIYPASDYDIEVEKGKRSANDIYAF 110
>pdb|4ART|A Chain A, Structure Of The Orf273 Protein From The Acidianus
Two-Tailed Virus
pdb|4ART|B Chain B, Structure Of The Orf273 Protein From The Acidianus
Two-Tailed Virus
Length = 279
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 55 KCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEG------KGPVAQKGSTVQVHFDCIFR 108
K +E RE ++ IP E+ T+D K DIVE + +K T++ + I R
Sbjct: 4 KITEEREFQSISEIPEEEIDATNDEEKLADIVENEIEKEIRKSKTRKCKTIENFYYYILR 63
Query: 109 G--ITAVSSRESKLLAGNRSIAEPYEF 133
I S + ++ G RS + Y F
Sbjct: 64 DGKIYPASDYDIEVEKGKRSANDIYAF 90
>pdb|1YB0|A Chain A, Structure Of Plyl
pdb|1YB0|B Chain B, Structure Of Plyl
pdb|1YB0|C Chain C, Structure Of Plyl
Length = 159
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 20 HTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDG 79
H + KQA+ IP R A A C + N+++I +E ++ S G
Sbjct: 54 HVAVDDKQAIQGIPWERNAWA---------------CGDGNGPGNRESISVEICYSKSGG 98
Query: 80 LKYY 83
+YY
Sbjct: 99 DRYY 102
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 26.9 bits (58), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 72 DYHTTSDGLKYYDIVEG--KGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAE 129
DY TTS+ + D VE G + G V V + G TA+ + + G S+
Sbjct: 238 DYLTTSNKVSLGDTVEAYENGSLNAAGKHVVV----LGGGDTAMDCVRTAIRQGATSVKC 293
Query: 130 PYEFKVGGPPGKERKREFVDNQNGLFSAQAAPK 162
Y PG +R+ + + F QAAP+
Sbjct: 294 LYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPE 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,077,705
Number of Sequences: 62578
Number of extensions: 235507
Number of successful extensions: 517
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 34
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)