Query 028915
Match_columns 202
No_of_seqs 225 out of 1329
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.9 1.3E-26 2.8E-31 192.3 12.8 102 66-201 89-192 (205)
2 TIGR03516 ppisom_GldI peptidyl 99.9 2E-24 4.3E-29 177.4 11.5 103 66-201 57-163 (177)
3 KOG0552 FKBP-type peptidyl-pro 99.9 5.8E-24 1.3E-28 179.6 11.2 96 73-201 115-213 (226)
4 KOG0544 FKBP-type peptidyl-pro 99.9 1.7E-22 3.7E-27 148.9 9.3 92 79-202 2-96 (108)
5 KOG0549 FKBP-type peptidyl-pro 99.9 2.2E-22 4.7E-27 164.3 10.7 94 76-201 66-163 (188)
6 PRK11570 peptidyl-prolyl cis-t 99.9 6.6E-22 1.4E-26 166.0 11.2 103 66-202 90-194 (206)
7 PRK10902 FKBP-type peptidyl-pr 99.8 6.3E-20 1.4E-24 159.5 11.8 102 66-201 134-236 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.7 1.9E-17 4.2E-22 121.1 9.0 78 92-201 4-84 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.6 2.8E-15 6.2E-20 120.9 6.8 73 92-196 4-77 (156)
10 COG1047 SlpA FKBP-type peptidy 99.4 3.2E-13 7E-18 110.3 7.5 73 92-196 2-75 (174)
11 PRK10737 FKBP-type peptidyl-pr 99.4 1.1E-12 2.4E-17 109.4 6.9 72 92-196 2-74 (196)
12 KOG0543 FKBP-type peptidyl-pro 99.3 6.2E-12 1.3E-16 113.8 10.3 91 77-201 83-177 (397)
13 KOG0543 FKBP-type peptidyl-pro 98.5 1.6E-07 3.4E-12 85.5 5.9 58 86-176 1-60 (397)
14 TIGR00115 tig trigger factor. 98.4 8.1E-07 1.8E-11 81.1 8.7 69 92-194 146-214 (408)
15 PRK01490 tig trigger factor; P 98.3 2.1E-06 4.6E-11 79.1 8.7 69 92-194 157-225 (435)
16 COG0544 Tig FKBP-type peptidyl 98.0 1.5E-05 3.3E-10 74.1 7.2 64 93-190 158-223 (441)
17 KOG0545 Aryl-hydrocarbon recep 96.9 0.00039 8.5E-09 60.6 1.4 78 76-185 8-90 (329)
18 cd01090 Creatinase Creatine am 48.8 19 0.00042 30.2 3.2 60 91-179 75-134 (228)
19 cd01089 PA2G4-like Related to 40.2 41 0.00088 28.0 3.9 62 91-179 81-145 (228)
20 PLN00044 multi-copper oxidase- 37.0 43 0.00092 32.8 3.9 32 74-105 38-76 (596)
21 PHA02122 hypothetical protein 37.0 61 0.0013 22.0 3.5 20 94-113 39-58 (65)
22 COG0024 Map Methionine aminope 36.3 56 0.0012 28.5 4.2 25 91-115 85-109 (255)
23 PF15240 Pro-rich: Proline-ric 34.0 25 0.00055 29.2 1.6 18 39-56 2-19 (179)
24 PRK12897 methionine aminopepti 33.1 55 0.0012 27.6 3.6 61 90-179 82-142 (248)
25 TIGR00501 met_pdase_II methion 32.6 77 0.0017 27.8 4.5 26 90-115 72-97 (295)
26 PF09122 DUF1930: Domain of un 31.0 63 0.0014 22.4 2.9 22 165-186 35-56 (68)
27 cd01088 MetAP2 Methionine Amin 30.0 86 0.0019 27.4 4.4 27 90-116 68-94 (291)
28 PLN00067 PsbP domain-containin 28.6 1.8E+02 0.0039 25.6 6.0 29 33-61 42-70 (263)
29 PRK12318 methionine aminopepti 28.1 67 0.0015 28.2 3.4 26 90-115 123-148 (291)
30 PRK12896 methionine aminopepti 27.5 72 0.0016 26.7 3.4 25 90-114 88-112 (255)
31 PTZ00053 methionine aminopepti 27.2 76 0.0016 30.2 3.7 26 91-116 232-257 (470)
32 PRK08671 methionine aminopepti 26.4 1.1E+02 0.0025 26.6 4.5 25 91-115 70-94 (291)
33 PRK00226 greA transcription el 26.3 1.1E+02 0.0025 24.1 4.2 24 164-187 123-146 (157)
34 COG4704 Uncharacterized protei 25.7 2.7E+02 0.0059 22.3 6.0 19 94-112 72-90 (151)
35 TIGR00500 met_pdase_I methioni 25.4 88 0.0019 26.1 3.5 26 90-115 81-106 (247)
36 cd01086 MetAP1 Methionine Amin 24.5 90 0.002 25.8 3.4 26 90-115 73-98 (238)
37 TIGR00495 crvDNA_42K 42K curve 23.1 1.2E+02 0.0025 28.0 4.1 25 91-115 99-123 (389)
38 PLN03158 methionine aminopepti 23.0 1E+02 0.0022 28.6 3.6 61 90-179 215-275 (396)
39 PLN00042 photosystem II oxygen 22.3 2.1E+02 0.0045 25.2 5.2 12 32-43 48-59 (260)
40 TIGR03096 nitroso_cyanin nitro 21.9 2.1E+02 0.0045 22.6 4.7 28 77-104 43-76 (135)
41 TIGR01462 greA transcription e 21.7 1.8E+02 0.0038 22.9 4.4 25 163-187 117-141 (151)
42 COG3712 FecR Fe2+-dicitrate se 21.7 1.7E+02 0.0037 26.5 4.7 46 72-117 114-166 (322)
43 PF01272 GreA_GreB: Transcript 20.6 1.1E+02 0.0023 21.2 2.6 23 164-186 43-65 (77)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-26 Score=192.26 Aligned_cols=102 Identities=35% Similarity=0.587 Sum_probs=93.3
Q ss_pred CCCCCCCceeCCCCeEEEEEecCCCCccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccc
Q 028915 66 KAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERK 144 (202)
Q Consensus 66 ~~~~~~~~~~~~sGl~~~~l~~G~G~~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~ 144 (202)
++.......++++|++|++++.|+|..|+.+|.|.|||+|+ .||++||||+++ ++|+.|.+|.
T Consensus 89 ~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~r---------g~p~~f~l~~------- 152 (205)
T COG0545 89 KNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDR---------GQPAEFPLGG------- 152 (205)
T ss_pred hhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCcccccccc---------CCCceeecCC-------
Confidence 34445567889999999999999999999999999999997 699999999985 9999999984
Q ss_pred cccccccCcccccCCCCCCCchHHHHhcCCCcCcEEEEEEcCCCCCCCCCCC-CCCCC
Q 028915 145 REFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPVK 201 (202)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~i~Gle~aL~gMkvG~k~~v~IPp~lgYG~~g~~-~IPpn 201 (202)
+|+||++||++|++|++|+++|||+||||++|.+ .||||
T Consensus 153 ------------------vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~~g~Ippn 192 (205)
T COG0545 153 ------------------VIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPN 192 (205)
T ss_pred ------------------eeehHHHHHhhCCCCceEEEEeCchhccCcCCCCCCCCCC
Confidence 7999999999999999999999999999999954 59998
No 2
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.91 E-value=2e-24 Score=177.42 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=91.3
Q ss_pred CCCCCCCceeCCCCeEEEEEec--CCCCccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcc
Q 028915 66 KAIPLEDYHTTSDGLKYYDIVE--GKGPVAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKE 142 (202)
Q Consensus 66 ~~~~~~~~~~~~sGl~~~~l~~--G~G~~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~ 142 (202)
+..+...|.++++|++|.++++ |+|..|+.||.|.+||+++ .+|++|+++++ ..|+.|.+|.+
T Consensus 57 ~~~~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~----------~~P~~f~vg~~---- 122 (177)
T TIGR03516 57 SADSIVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEE----------LGPQTYKVDQQ---- 122 (177)
T ss_pred HhCCCCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCC----------CCCEEEEeCCc----
Confidence 3345678899999999999876 7778899999999999996 79999999976 46999999875
Q ss_pred cccccccccCcccccCCCCCCCchHHHHhcCCCcCcEEEEEEcCCCCCCCCCCC-CCCCC
Q 028915 143 RKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPVK 201 (202)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~i~Gle~aL~gMkvG~k~~v~IPp~lgYG~~g~~-~IPpn 201 (202)
++++||+++|.+|++|++++|+|||++|||++|.+ .||||
T Consensus 123 -------------------~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~~Ippn 163 (177)
T TIGR03516 123 -------------------DLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQNKIGPN 163 (177)
T ss_pred -------------------chhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCCCcCcC
Confidence 47899999999999999999999999999999975 49998
No 3
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.8e-24 Score=179.65 Aligned_cols=96 Identities=41% Similarity=0.651 Sum_probs=90.2
Q ss_pred ceeCCCCeEEEEEecCCCCccCCCCEEEEEEEEEe--CCeEEeeccchhhccCCCCCCCCeE-EEeCCCCCccccccccc
Q 028915 73 YHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF--RGITAVSSRESKLLAGNRSIAEPYE-FKVGGPPGKERKREFVD 149 (202)
Q Consensus 73 ~~~~~sGl~~~~l~~G~G~~p~~Gd~V~v~Y~g~~--~G~~fdss~~~~~~~~~~~~~~p~~-f~vG~~~g~~~~~~~~~ 149 (202)
..++++||+|+|++.|+|+.+..|+.|.+||.|++ +|++||+++. +.|+. |.+|.+
T Consensus 115 ~~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~----------~kp~~~f~lg~g----------- 173 (226)
T KOG0552|consen 115 SRTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG----------GKPFKLFRLGSG----------- 173 (226)
T ss_pred ceecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC----------CCCccccccCCC-----------
Confidence 36789999999999999999999999999999974 7999999986 68999 999986
Q ss_pred ccCcccccCCCCCCCchHHHHhcCCCcCcEEEEEEcCCCCCCCCCCCCCCCC
Q 028915 150 NQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPVK 201 (202)
Q Consensus 150 ~~~g~~~~~~~~~~i~Gle~aL~gMkvG~k~~v~IPp~lgYG~~g~~~IPpn 201 (202)
++|+||+.+|.+|++|++|+|+|||+||||.++.+.||||
T Consensus 174 ------------~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~~~Ippn 213 (226)
T KOG0552|consen 174 ------------EVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGVPEIPPN 213 (226)
T ss_pred ------------CCCchHHHhhhhhccCCeeEEEeCccccccccCcCcCCCC
Confidence 5999999999999999999999999999999999999998
No 4
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.7e-22 Score=148.92 Aligned_cols=92 Identities=28% Similarity=0.454 Sum_probs=84.6
Q ss_pred CeEEEEEecCCC-CccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccc
Q 028915 79 GLKYYDIVEGKG-PVAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFS 156 (202)
Q Consensus 79 Gl~~~~l~~G~G-~~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~ 156 (202)
|+....+..|+| ..|+.||+|++||++. .||+.||||+++ ++||.|.+|.+
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr---------~kPfkf~IGkg------------------ 54 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDR---------GKPFKFKIGKG------------------ 54 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccccc---------CCCeeEEecCc------------------
Confidence 678899999999 5599999999999995 699999999885 89999999997
Q ss_pred cCCCCCCCchHHHHhcCCCcCcEEEEEEcCCCCCCCCCCC-CCCCCC
Q 028915 157 AQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPVKP 202 (202)
Q Consensus 157 ~~~~~~~i~Gle~aL~gMkvG~k~~v~IPp~lgYG~~g~~-~IPpn~ 202 (202)
++|+||++++..|.+|++.++.|+|++|||.+|.+ .||||-
T Consensus 55 -----eVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~~IppNa 96 (108)
T KOG0544|consen 55 -----EVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPGGIPPNA 96 (108)
T ss_pred -----ceeechhhcchhccccccceeeeccccccCCCCCCCccCCCc
Confidence 58999999999999999999999999999999965 499983
No 5
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.2e-22 Score=164.27 Aligned_cols=94 Identities=28% Similarity=0.387 Sum_probs=81.8
Q ss_pred CCCCeEEEEEecC--CCCccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccC
Q 028915 76 TSDGLKYYDIVEG--KGPVAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQN 152 (202)
Q Consensus 76 ~~sGl~~~~l~~G--~G~~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~ 152 (202)
+.+.+++..+.+- -..+.+.||++.+||++. .||++||||+++ ++|++|++|.+
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~r---------g~P~~f~LG~g-------------- 122 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSR---------GAPFTFTLGTG-------------- 122 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccC---------CCCEEEEeCCC--------------
Confidence 3456677776653 345699999999999995 799999999985 89999999997
Q ss_pred cccccCCCCCCCchHHHHhcCCCcCcEEEEEEcCCCCCCCCCCCC-CCCC
Q 028915 153 GLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPVK 201 (202)
Q Consensus 153 g~~~~~~~~~~i~Gle~aL~gMkvG~k~~v~IPp~lgYG~~g~~~-IPpn 201 (202)
++|+||+++|.+|++||||+++|||+||||++|.+. ||++
T Consensus 123 ---------qVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~IP~~ 163 (188)
T KOG0549|consen 123 ---------QVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPPKIPGD 163 (188)
T ss_pred ---------ceeccHhHHhhhhCcccceEEecCccccCccCCCCCCCCCC
Confidence 589999999999999999999999999999999654 9986
No 6
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.87 E-value=6.6e-22 Score=165.98 Aligned_cols=103 Identities=27% Similarity=0.438 Sum_probs=92.8
Q ss_pred CCCCCCCceeCCCCeEEEEEecCCCCccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccc
Q 028915 66 KAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERK 144 (202)
Q Consensus 66 ~~~~~~~~~~~~sGl~~~~l~~G~G~~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~ 144 (202)
.+.......++++|++|+++++|+|..|..||.|.|||+++ .||++||||+++ ++|+.|.++.
T Consensus 90 ~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~---------g~P~~f~l~~------- 153 (206)
T PRK11570 90 ENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVAR---------GEPAEFPVNG------- 153 (206)
T ss_pred HhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCC---------CCCeEEEeec-------
Confidence 34455678899999999999999999999999999999996 699999999874 7899999964
Q ss_pred cccccccCcccccCCCCCCCchHHHHhcCCCcCcEEEEEEcCCCCCCCCCCC-CCCCCC
Q 028915 145 REFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPVKP 202 (202)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~i~Gle~aL~gMkvG~k~~v~IPp~lgYG~~g~~-~IPpn~ 202 (202)
+|+||+++|.+|++|++++|+|||++|||++|.+ .||||.
T Consensus 154 ------------------vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s 194 (206)
T PRK11570 154 ------------------VIPGWIEALTLMPVGSKWELTIPHELAYGERGAGASIPPFS 194 (206)
T ss_pred ------------------hhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCCCcCCCC
Confidence 6899999999999999999999999999999976 599983
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.82 E-value=6.3e-20 Score=159.54 Aligned_cols=102 Identities=30% Similarity=0.454 Sum_probs=92.2
Q ss_pred CCCCCCCceeCCCCeEEEEEecCCCCccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccc
Q 028915 66 KAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERK 144 (202)
Q Consensus 66 ~~~~~~~~~~~~sGl~~~~l~~G~G~~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~ 144 (202)
.+.....+.++++|++|+++++|+|..|+.||.|.|||+++ .||++|++++++ +.|+.|.++.
T Consensus 134 ~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~---------g~p~~f~l~~------- 197 (269)
T PRK10902 134 KFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTR---------GEPLSFRLDG------- 197 (269)
T ss_pred HhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccC---------CCceEEecCC-------
Confidence 34455678899999999999999999999999999999997 699999999864 7899998864
Q ss_pred cccccccCcccccCCCCCCCchHHHHhcCCCcCcEEEEEEcCCCCCCCCCCCCCCCC
Q 028915 145 REFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPVK 201 (202)
Q Consensus 145 ~~~~~~~~g~~~~~~~~~~i~Gle~aL~gMkvG~k~~v~IPp~lgYG~~g~~~IPpn 201 (202)
+|+||+++|++|++|++++|+||++++||.++.+.||||
T Consensus 198 ------------------vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~gIppn 236 (269)
T PRK10902 198 ------------------VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPAN 236 (269)
T ss_pred ------------------cchHHHHHHhcCCCCcEEEEEECchhhCCCCCCCCCCCC
Confidence 689999999999999999999999999999998789987
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.73 E-value=1.9e-17 Score=121.14 Aligned_cols=78 Identities=36% Similarity=0.637 Sum_probs=70.4
Q ss_pred ccCCCCEEEEEEEEEe-CCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHHH
Q 028915 92 VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (202)
Q Consensus 92 ~p~~Gd~V~v~Y~g~~-~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~a 170 (202)
.|+.||.|.+||+++. +|++|++++.. ..|+.|.+|.+ ++++||+++
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~---------~~~~~~~~g~~-----------------------~~i~g~e~a 51 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQE---------GEPFEFRLGSG-----------------------QVIPGLEEA 51 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTT---------TSEEEEETTSS-----------------------SSSHHHHHH
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeec---------CcceeeeeccC-----------------------ccccchhhh
Confidence 4999999999999975 99999999753 78999999986 478999999
Q ss_pred hcCCCcCcEEEEEEcCCCCCCCCCCC--CCCCC
Q 028915 171 TEGMKVGGKRTVIVPPEAGYDKKRMN--EIPVK 201 (202)
Q Consensus 171 L~gMkvG~k~~v~IPp~lgYG~~g~~--~IPpn 201 (202)
|.+|++|++++|+|||+++||+++.. .||||
T Consensus 52 l~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~ 84 (94)
T PF00254_consen 52 LIGMKVGEKREFYVPPELAYGEKGLEPPKIPPN 84 (94)
T ss_dssp HTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTT
T ss_pred cccccCCCEeeeEeCChhhcCccccCCCCcCCC
Confidence 99999999999999999999999873 49986
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.58 E-value=2.8e-15 Score=120.86 Aligned_cols=73 Identities=32% Similarity=0.430 Sum_probs=66.1
Q ss_pred ccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHHH
Q 028915 92 VAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (202)
Q Consensus 92 ~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~a 170 (202)
.++.||.|.+||+++ .+|++||||++. ++|+.|.+|.+ ++++||+++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~---------~~P~~f~~G~g-----------------------~vi~gle~a 51 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNN---------GKPALFRLGDG-----------------------SLSEGLEQQ 51 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCC---------CCCEEEEeCCC-----------------------CccHHHHHH
Confidence 578999999999997 589999999863 68999999986 478999999
Q ss_pred hcCCCcCcEEEEEEcCCCCCCCCCCC
Q 028915 171 TEGMKVGGKRTVIVPPEAGYDKKRMN 196 (202)
Q Consensus 171 L~gMkvG~k~~v~IPp~lgYG~~g~~ 196 (202)
|.+|++|++++|.|||++|||++...
T Consensus 52 L~gm~~Ge~~~v~ipp~~ayG~~d~~ 77 (156)
T PRK15095 52 LLGLKVGDKKTFSLEPEAAFGVPSPD 77 (156)
T ss_pred HcCCCCCCEEEEEEChHHhcCCCChH
Confidence 99999999999999999999998753
No 10
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.2e-13 Score=110.33 Aligned_cols=73 Identities=26% Similarity=0.405 Sum_probs=66.0
Q ss_pred ccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHHH
Q 028915 92 VAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (202)
Q Consensus 92 ~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~a 170 (202)
.+.+||.|.+||+++ .||++||||.+. .+|+.|.+|.+ ++++|||+|
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~---------~~P~~~i~G~g-----------------------~li~glE~a 49 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDEN---------YGPLTFIVGAG-----------------------QLIPGLEEA 49 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEccccc---------CCCeEEEecCC-----------------------CcchhHHHH
Confidence 468899999999998 479999999763 67999999986 588999999
Q ss_pred hcCCCcCcEEEEEEcCCCCCCCCCCC
Q 028915 171 TEGMKVGGKRTVIVPPEAGYDKKRMN 196 (202)
Q Consensus 171 L~gMkvG~k~~v~IPp~lgYG~~g~~ 196 (202)
|.+|.+|++.+|.|||+.|||.+...
T Consensus 50 l~g~~~Ge~~~V~IpPE~AfGe~~~~ 75 (174)
T COG1047 50 LLGKEVGEEFTVEIPPEDAFGEYDPD 75 (174)
T ss_pred HhCCCCCceeEEEeCchHhcCCCChH
Confidence 99999999999999999999998864
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.37 E-value=1.1e-12 Score=109.44 Aligned_cols=72 Identities=21% Similarity=0.268 Sum_probs=65.5
Q ss_pred ccCCCCEEEEEEEEEe-CCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHHH
Q 028915 92 VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (202)
Q Consensus 92 ~p~~Gd~V~v~Y~g~~-~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~a 170 (202)
++++++.|+++|+.+. +|++||+|+. .+|+.|.+|.+ ++++|||++
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~----------~~Pl~~~~G~g-----------------------~lipglE~a 48 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV----------SAPLDYLHGHG-----------------------SLISGLETA 48 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC----------CCCeEEEeCCC-----------------------cchHHHHHH
Confidence 4678999999999974 8999999975 68999999986 588999999
Q ss_pred hcCCCcCcEEEEEEcCCCCCCCCCCC
Q 028915 171 TEGMKVGGKRTVIVPPEAGYDKKRMN 196 (202)
Q Consensus 171 L~gMkvG~k~~v~IPp~lgYG~~g~~ 196 (202)
|.+|++|++.+|.|||+.|||++...
T Consensus 49 L~G~~~Gd~~~v~l~peeAyGe~d~~ 74 (196)
T PRK10737 49 LEGHEVGDKFDVAVGANDAYGQYDEN 74 (196)
T ss_pred HcCCCCCCEEEEEEChHHhcCCCChH
Confidence 99999999999999999999998864
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.2e-12 Score=113.78 Aligned_cols=91 Identities=24% Similarity=0.286 Sum_probs=77.4
Q ss_pred CCCeEEEEEecCCC--CccCCCCEEEEEEEEEeCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcc
Q 028915 77 SDGLKYYDIVEGKG--PVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGL 154 (202)
Q Consensus 77 ~sGl~~~~l~~G~G--~~p~~Gd~V~v~Y~g~~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~ 154 (202)
+.+|..+++++|.| ..|..|.+|.|||.|.+.|.+|+++. ..|+|..|+..
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~------------~~fe~~~Ge~~--------------- 135 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDGVFDQRE------------LRFEFGEGEDI--------------- 135 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCcceeccc------------cceEEecCCcc---------------
Confidence 78999999999999 66999999999999987777888653 34777777631
Q ss_pred cccCCCCCCCchHHHHhcCCCcCcEEEEEEcCCCCCCCCCC--CCCCCC
Q 028915 155 FSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRM--NEIPVK 201 (202)
Q Consensus 155 ~~~~~~~~~i~Gle~aL~gMkvG~k~~v~IPp~lgYG~~g~--~~IPpn 201 (202)
.+|.||+.+|..|++|+++.|+|+|+++||+.+. ..||||
T Consensus 136 -------~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPn 177 (397)
T KOG0543|consen 136 -------DVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPN 177 (397)
T ss_pred -------chhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCC
Confidence 4789999999999999999999999999996664 359998
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.6e-07 Score=85.46 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=51.9
Q ss_pred ecCCCC-ccCCCCEEEEEEEEE-eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCC
Q 028915 86 VEGKGP-VAQKGSTVQVHFDCI-FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKP 163 (202)
Q Consensus 86 ~~G~G~-~p~~Gd~V~v~Y~g~-~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~ 163 (202)
++|.|. .|..||.|.+||+++ .||+.||||.+ +.|+.|.+|.+ ++
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d----------~~~~~~~lg~g-----------------------~v 47 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD----------GDPFKFDLGKG-----------------------SV 47 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC----------CCceeeecCCC-----------------------cc
Confidence 368884 599999999999997 69999999987 68999999997 58
Q ss_pred CchHHHHhcCCCc
Q 028915 164 PPAMYSVTEGMKV 176 (202)
Q Consensus 164 i~Gle~aL~gMkv 176 (202)
|.||+.++..|+.
T Consensus 48 i~~~~~gv~tm~~ 60 (397)
T KOG0543|consen 48 IKGWDLGVATMKK 60 (397)
T ss_pred ccccccccccccc
Confidence 8999999999998
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.44 E-value=8.1e-07 Score=81.09 Aligned_cols=69 Identities=23% Similarity=0.418 Sum_probs=60.1
Q ss_pred ccCCCCEEEEEEEEEeCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHHHh
Q 028915 92 VAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVT 171 (202)
Q Consensus 92 ~p~~Gd~V~v~Y~g~~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~aL 171 (202)
.++.||.|.++|+++.+|..|+++. ..++.|.+|.+ .+++||+++|
T Consensus 146 ~~~~gD~V~v~~~~~~dg~~~~~~~-----------~~~~~~~lg~~-----------------------~~~~~~ee~L 191 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFIDGEAFEGGK-----------AENFSLELGSG-----------------------QFIPGFEEQL 191 (408)
T ss_pred ccCCCCEEEEEEEEEECCEECcCCC-----------CCCeEEEECCC-----------------------CcchhHHHHh
Confidence 4788999999999998999887653 56899999985 4789999999
Q ss_pred cCCCcCcEEEEEEcCCCCCCCCC
Q 028915 172 EGMKVGGKRTVIVPPEAGYDKKR 194 (202)
Q Consensus 172 ~gMkvG~k~~v~IPp~lgYG~~g 194 (202)
.||++|++++|.++....|+...
T Consensus 192 ~G~k~Gd~~~~~v~~p~~~~~~~ 214 (408)
T TIGR00115 192 VGMKAGEEKEIKVTFPEDYHAEE 214 (408)
T ss_pred CCCCCCCeeEEEecCccccCccc
Confidence 99999999999999877887655
No 15
>PRK01490 tig trigger factor; Provisional
Probab=98.33 E-value=2.1e-06 Score=79.06 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=58.7
Q ss_pred ccCCCCEEEEEEEEEeCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHHHh
Q 028915 92 VAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVT 171 (202)
Q Consensus 92 ~p~~Gd~V~v~Y~g~~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~aL 171 (202)
.++.||.|.++|++..+|+.|+++. ..++.|.+|.+ .+++||+++|
T Consensus 157 ~~~~gD~V~vd~~~~~~g~~~~~~~-----------~~~~~~~lg~~-----------------------~~~~~fee~L 202 (435)
T PRK01490 157 PAENGDRVTIDFVGSIDGEEFEGGK-----------AEDFSLELGSG-----------------------RFIPGFEEQL 202 (435)
T ss_pred cCCCCCEEEEEEEEEECCEECcCCC-----------CCceEEEEcCC-----------------------CcchhHHHHh
Confidence 4799999999999999999887653 56899999986 4789999999
Q ss_pred cCCCcCcEEEEEEcCCCCCCCCC
Q 028915 172 EGMKVGGKRTVIVPPEAGYDKKR 194 (202)
Q Consensus 172 ~gMkvG~k~~v~IPp~lgYG~~g 194 (202)
.||++|+++.+.++....|+...
T Consensus 203 ~G~k~Ge~~~~~~~~p~~~~~~~ 225 (435)
T PRK01490 203 VGMKAGEEKTIDVTFPEDYHAED 225 (435)
T ss_pred CCCCCCCeeEEEecCcccccccc
Confidence 99999999999888766776543
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.5e-05 Score=74.13 Aligned_cols=64 Identities=23% Similarity=0.409 Sum_probs=54.1
Q ss_pred cCCCCEEEEEEEEEeCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHHHhc
Q 028915 93 AQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTE 172 (202)
Q Consensus 93 p~~Gd~V~v~Y~g~~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~aL~ 172 (202)
++.||.|+|+|.|..||..|.... .+-+.|.+|.+ ..||||+++|.
T Consensus 158 a~~gD~v~IDf~g~iDg~~fegg~-----------ae~~~l~lGs~-----------------------~fipgFe~~Lv 203 (441)
T COG0544 158 AENGDRVTIDFEGSVDGEEFEGGK-----------AENFSLELGSG-----------------------RFIPGFEDQLV 203 (441)
T ss_pred cccCCEEEEEEEEEEcCeeccCcc-----------ccCeEEEEcCC-----------------------CchhhHHhhhc
Confidence 899999999999999999886542 45789999997 47899999999
Q ss_pred CCCcCcEEE--EEEcCCCCC
Q 028915 173 GMKVGGKRT--VIVPPEAGY 190 (202)
Q Consensus 173 gMkvG~k~~--v~IPp~lgY 190 (202)
||+.|++.. +.+|.++.-
T Consensus 204 G~k~Ge~k~i~vtFP~dy~a 223 (441)
T COG0544 204 GMKAGEEKDIKVTFPEDYHA 223 (441)
T ss_pred cCcCCCeeEEEEEcccccch
Confidence 999999977 666766543
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00039 Score=60.58 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=64.1
Q ss_pred CCCCeEEEEEecCCCC--ccCCCCEEEEEEEEE---eCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccc
Q 028915 76 TSDGLKYYDIVEGKGP--VAQKGSTVQVHFDCI---FRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDN 150 (202)
Q Consensus 76 ~~sGl~~~~l~~G~G~--~p~~Gd~V~v~Y~g~---~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~ 150 (202)
...|++.+++..|+|. +-.+|..|.+||... ..++++|+|+. .++|+++.+|..
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk---------~gkPmeiiiGkk------------ 66 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK---------VGKPMEIIIGKK------------ 66 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh---------cCCCeEEeeccc------------
Confidence 3468999999999995 467899999999975 24678888876 389999999984
Q ss_pred cCcccccCCCCCCCchHHHHhcCCCcCcEEEEEEc
Q 028915 151 QNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVP 185 (202)
Q Consensus 151 ~~g~~~~~~~~~~i~Gle~aL~gMkvG~k~~v~IP 185 (202)
| -.+-||.-|..|+++|...|.+-
T Consensus 67 ----F-------kL~VwE~il~tM~v~EvaqF~~d 90 (329)
T KOG0545|consen 67 ----F-------KLEVWEIILTTMRVHEVAQFWCD 90 (329)
T ss_pred ----c-------ccHHHHHHHHHHhhhhHHHhhhh
Confidence 1 35889999999999998877664
No 18
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=48.82 E-value=19 Score=30.17 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=38.0
Q ss_pred CccCCCCEEEEEEEEEeCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHHH
Q 028915 91 PVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (202)
Q Consensus 91 ~~p~~Gd~V~v~Y~g~~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~a 170 (202)
..+++||.|.+.+-+.++|..-|.+ .+|.+|..+.. .++.++ .+..+.+.+
T Consensus 75 r~l~~GD~v~~d~g~~~~GY~ad~~---------------RT~~vG~~~~~--~~~~~~------------~~~ea~~~~ 125 (228)
T cd01090 75 RKVQRGDILSLNCFPMIAGYYTALE---------------RTLFLDEVSDA--HLKIWE------------ANVAVHERG 125 (228)
T ss_pred cccCCCCEEEEEEeEEECCEeeeeE---------------EEEECCCCCHH--HHHHHH------------HHHHHHHHH
Confidence 4589999999998888888655543 34667754311 222222 234667777
Q ss_pred hcCCCcCcE
Q 028915 171 TEGMKVGGK 179 (202)
Q Consensus 171 L~gMkvG~k 179 (202)
+..||+|-+
T Consensus 126 ~~~~rpG~~ 134 (228)
T cd01090 126 LELIKPGAR 134 (228)
T ss_pred HHHcCCCCc
Confidence 777777755
No 19
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=40.22 E-value=41 Score=28.04 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=38.5
Q ss_pred CccCCCCEEEEEEEEEeCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCc---ccccccccccCcccccCCCCCCCchH
Q 028915 91 PVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGK---ERKREFVDNQNGLFSAQAAPKPPPAM 167 (202)
Q Consensus 91 ~~p~~Gd~V~v~Y~g~~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~---~~~~~~~~~~~g~~~~~~~~~~i~Gl 167 (202)
..++.||.|.+.+-+.++|..-|-+ .+|.+|..+.. .+.++.++ ....+.
T Consensus 81 ~~l~~Gd~v~iD~g~~~~GY~sD~t---------------RT~~vG~~~~~~~~~~~~~~~~------------~~~ea~ 133 (228)
T cd01089 81 YTLKDGDVVKIDLGCHIDGYIAVVA---------------HTIVVGAEAETPVTGKKADVIA------------AAHYAL 133 (228)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEE---------------EEEEeCCcCccccchHHHHHHH------------HHHHHH
Confidence 4589999999999888899766544 34666653210 01112211 123567
Q ss_pred HHHhcCCCcCcE
Q 028915 168 YSVTEGMKVGGK 179 (202)
Q Consensus 168 e~aL~gMkvG~k 179 (202)
+.++..||+|-+
T Consensus 134 ~~~~~~~kpG~~ 145 (228)
T cd01089 134 EAALRLLRPGNQ 145 (228)
T ss_pred HHHHHHhCCCCc
Confidence 778888888865
No 20
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=36.99 E-value=43 Score=32.76 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=19.8
Q ss_pred eeCCCC--eE-EEEEecCC--CCc--cCCCCEEEEEEEE
Q 028915 74 HTTSDG--LK-YYDIVEGK--GPV--AQKGSTVQVHFDC 105 (202)
Q Consensus 74 ~~~~sG--l~-~~~l~~G~--G~~--p~~Gd~V~v~Y~g 105 (202)
..+++| .. ...+..|. |+. +..||.|.|+.+-
T Consensus 38 ~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N 76 (596)
T PLN00044 38 SAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRN 76 (596)
T ss_pred EEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEe
Confidence 346777 33 23344454 443 7899999998764
No 21
>PHA02122 hypothetical protein
Probab=36.96 E-value=61 Score=21.99 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.1
Q ss_pred CCCCEEEEEEEEEeCCeEEe
Q 028915 94 QKGSTVQVHFDCIFRGITAV 113 (202)
Q Consensus 94 ~~Gd~V~v~Y~g~~~G~~fd 113 (202)
..||.|.|+|....+|+.|-
T Consensus 39 ~~gd~v~vn~e~~~ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVVNGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEECCEEEE
Confidence 36899999999988998774
No 22
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=36.28 E-value=56 Score=28.53 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.4
Q ss_pred CccCCCCEEEEEEEEEeCCeEEeec
Q 028915 91 PVAQKGSTVQVHFDCIFRGITAVSS 115 (202)
Q Consensus 91 ~~p~~Gd~V~v~Y~g~~~G~~fdss 115 (202)
...+.||.|.|.....+||..-|++
T Consensus 85 ~vlk~GDiv~IDvg~~~dG~~~Dsa 109 (255)
T COG0024 85 KVLKEGDIVKIDVGAHIDGYIGDTA 109 (255)
T ss_pred cccCCCCEEEEEEEEEECCeeeeEE
Confidence 4588999999999998999877765
No 23
>PF15240 Pro-rich: Proline-rich
Probab=33.99 E-value=25 Score=29.15 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhcCCCc
Q 028915 39 AAILISSLPFSVISLPKC 56 (202)
Q Consensus 39 ~~l~~~al~~~~~~~~~~ 56 (202)
|++||+|+.|++.|++..
T Consensus 2 LlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQST 19 (179)
T ss_pred hhHHHHHHHHHhhhcccc
Confidence 566666666666666554
No 24
>PRK12897 methionine aminopeptidase; Reviewed
Probab=33.12 E-value=55 Score=27.60 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=38.4
Q ss_pred CCccCCCCEEEEEEEEEeCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHH
Q 028915 90 GPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYS 169 (202)
Q Consensus 90 G~~p~~Gd~V~v~Y~g~~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~ 169 (202)
...++.||.|.+.+-+.++|..-|.+ .+|.+|....+. ++.++ .+..+++.
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~t---------------RT~~vG~~s~~~--~~~~~------------~~~~a~~~ 132 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSA---------------WTYRVGKVSDEA--EKLLL------------VAENALYK 132 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEE---------------EEEEcCCCCHHH--HHHHH------------HHHHHHHH
Confidence 45689999999999887888766644 346667642111 11111 12356777
Q ss_pred HhcCCCcCcE
Q 028915 170 VTEGMKVGGK 179 (202)
Q Consensus 170 aL~gMkvG~k 179 (202)
++..|++|-+
T Consensus 133 ~i~~~kpG~~ 142 (248)
T PRK12897 133 GIDQAVIGNR 142 (248)
T ss_pred HHHhhcCCCc
Confidence 7788888754
No 25
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=32.60 E-value=77 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=20.8
Q ss_pred CCccCCCCEEEEEEEEEeCCeEEeec
Q 028915 90 GPVAQKGSTVQVHFDCIFRGITAVSS 115 (202)
Q Consensus 90 G~~p~~Gd~V~v~Y~g~~~G~~fdss 115 (202)
....+.||.|.+++-+.+||...|.+
T Consensus 72 ~~~l~~GDvV~iD~G~~~dGY~aD~a 97 (295)
T TIGR00501 72 KTVFKDGDVVKLDLGAHVDGYIADTA 97 (295)
T ss_pred CccCCCCCEEEEEEeEEECCEEEEEE
Confidence 34589999999998878899766654
No 26
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=30.96 E-value=63 Score=22.44 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.4
Q ss_pred chHHHHhcCCCcCcEEEEEEcC
Q 028915 165 PAMYSVTEGMKVGGKRTVIVPP 186 (202)
Q Consensus 165 ~Gle~aL~gMkvG~k~~v~IPp 186 (202)
+-+..|+..|+.||+..|++-+
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS 56 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKS 56 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETT
T ss_pred HHHHHHHHHhhcCceeEEEEec
Confidence 5688999999999999998854
No 27
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=29.96 E-value=86 Score=27.36 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred CCccCCCCEEEEEEEEEeCCeEEeecc
Q 028915 90 GPVAQKGSTVQVHFDCIFRGITAVSSR 116 (202)
Q Consensus 90 G~~p~~Gd~V~v~Y~g~~~G~~fdss~ 116 (202)
...++.||.|.+..-+.++|..-|.++
T Consensus 68 ~~~l~~GDvV~iD~G~~~dGY~sD~ar 94 (291)
T cd01088 68 DTVLKEGDVVKLDFGAHVDGYIADSAF 94 (291)
T ss_pred CcccCCCCEEEEEEEEEECCEEEEEEE
Confidence 356899999999987778997666543
No 28
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=28.62 E-value=1.8e+02 Score=25.62 Aligned_cols=29 Identities=31% Similarity=0.364 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHHHhhcCCCchhHHH
Q 028915 33 PISRRAAAILISSLPFSVISLPKCSEARE 61 (202)
Q Consensus 33 ~vsRr~~~l~~~al~~~~~~~~~~~~a~~ 61 (202)
...||.++..+++..+.+.....++++++
T Consensus 42 ~~~rr~~~~~~~~~~~~~~~~~~~~~~~~ 70 (263)
T PLN00067 42 VIHRRELLLGLALAPLILIAPEPPAEARE 70 (263)
T ss_pred hhHHHHHHhhhhhhhhhhccCCchhhhhe
Confidence 35677665665554444455554555544
No 29
>PRK12318 methionine aminopeptidase; Provisional
Probab=28.12 E-value=67 Score=28.15 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=20.5
Q ss_pred CCccCCCCEEEEEEEEEeCCeEEeec
Q 028915 90 GPVAQKGSTVQVHFDCIFRGITAVSS 115 (202)
Q Consensus 90 G~~p~~Gd~V~v~Y~g~~~G~~fdss 115 (202)
...++.||.|.+.+-+.++|..-|.+
T Consensus 123 ~~~l~~GD~V~vD~g~~~~GY~aDit 148 (291)
T PRK12318 123 DIPLKNGDIMNIDVSCIVDGYYGDCS 148 (291)
T ss_pred CCccCCCCEEEEEEeEEECcEEEEEE
Confidence 35689999999999888888665544
No 30
>PRK12896 methionine aminopeptidase; Reviewed
Probab=27.52 E-value=72 Score=26.67 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=19.4
Q ss_pred CCccCCCCEEEEEEEEEeCCeEEee
Q 028915 90 GPVAQKGSTVQVHFDCIFRGITAVS 114 (202)
Q Consensus 90 G~~p~~Gd~V~v~Y~g~~~G~~fds 114 (202)
...++.||.|.+.+-+.++|..-|.
T Consensus 88 ~~~l~~Gd~v~iD~g~~~~gY~aD~ 112 (255)
T PRK12896 88 PRVIKDGDLVNIDVSAYLDGYHGDT 112 (255)
T ss_pred CccCCCCCEEEEEEeEEECcEEEee
Confidence 3558999999999888788865543
No 31
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=27.23 E-value=76 Score=30.20 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=22.1
Q ss_pred CccCCCCEEEEEEEEEeCCeEEeecc
Q 028915 91 PVAQKGSTVQVHFDCIFRGITAVSSR 116 (202)
Q Consensus 91 ~~p~~Gd~V~v~Y~g~~~G~~fdss~ 116 (202)
..++.||.|.|++-+.++|...|+++
T Consensus 232 ~vLk~GDvVkID~G~~vdGYiaD~Ar 257 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHVNGRIIDCAF 257 (470)
T ss_pred cEecCCCeEEEEEeEEECCEEEeEEE
Confidence 45899999999999889998887654
No 32
>PRK08671 methionine aminopeptidase; Provisional
Probab=26.38 E-value=1.1e+02 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.3
Q ss_pred CccCCCCEEEEEEEEEeCCeEEeec
Q 028915 91 PVAQKGSTVQVHFDCIFRGITAVSS 115 (202)
Q Consensus 91 ~~p~~Gd~V~v~Y~g~~~G~~fdss 115 (202)
..++.||.|.+++-+.++|..-|.+
T Consensus 70 ~~l~~GDvV~iD~G~~~dGY~aD~a 94 (291)
T PRK08671 70 RVFPEGDVVKLDLGAHVDGYIADTA 94 (291)
T ss_pred cccCCCCEEEEEEeEEECCEEEEEE
Confidence 4589999999998778899766654
No 33
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=26.35 E-value=1.1e+02 Score=24.10 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.6
Q ss_pred CchHHHHhcCCCcCcEEEEEEcCC
Q 028915 164 PPAMYSVTEGMKVGGKRTVIVPPE 187 (202)
Q Consensus 164 i~Gle~aL~gMkvG~k~~v~IPp~ 187 (202)
..-|-.+|.|.++|+...+.+|..
T Consensus 123 ~SPlG~aLlGk~~Gd~v~~~~p~g 146 (157)
T PRK00226 123 ESPIARALIGKKVGDTVEVTTPGG 146 (157)
T ss_pred CChHHHHHhCCCCCCEEEEEcCCC
Confidence 356789999999999999999853
No 34
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.70 E-value=2.7e+02 Score=22.28 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=12.5
Q ss_pred CCCCEEEEEEEEEeCCeEE
Q 028915 94 QKGSTVQVHFDCIFRGITA 112 (202)
Q Consensus 94 ~~Gd~V~v~Y~g~~~G~~f 112 (202)
-.||.|...|.+..-|+.-
T Consensus 72 it~dpv~~~f~~Lk~G~YA 90 (151)
T COG4704 72 ITGDPVSKSFYGLKPGKYA 90 (151)
T ss_pred ccCCchhheeecCCCccEE
Confidence 3578888888776555543
No 35
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=25.39 E-value=88 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCccCCCCEEEEEEEEEeCCeEEeec
Q 028915 90 GPVAQKGSTVQVHFDCIFRGITAVSS 115 (202)
Q Consensus 90 G~~p~~Gd~V~v~Y~g~~~G~~fdss 115 (202)
...++.||.|.+.+-+.++|..-|.+
T Consensus 81 ~~~l~~Gd~v~iD~g~~~~gY~aD~~ 106 (247)
T TIGR00500 81 KKVLKDGDIVNIDVGVIYDGYHGDTA 106 (247)
T ss_pred CcccCCCCEEEEEEEEEECCEEEEEE
Confidence 35689999999999888888765544
No 36
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=24.48 E-value=90 Score=25.78 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=20.0
Q ss_pred CCccCCCCEEEEEEEEEeCCeEEeec
Q 028915 90 GPVAQKGSTVQVHFDCIFRGITAVSS 115 (202)
Q Consensus 90 G~~p~~Gd~V~v~Y~g~~~G~~fdss 115 (202)
...+++||.|.+.+-+.++|..-|-+
T Consensus 73 ~~~l~~Gd~v~id~g~~~~GY~ad~~ 98 (238)
T cd01086 73 DRVLKDGDIVNIDVGVELDGYHGDSA 98 (238)
T ss_pred CcccCCCCEEEEEEEEEECCEEEEEE
Confidence 35588999999999887888655543
No 37
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=23.10 E-value=1.2e+02 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.539 Sum_probs=21.0
Q ss_pred CccCCCCEEEEEEEEEeCCeEEeec
Q 028915 91 PVAQKGSTVQVHFDCIFRGITAVSS 115 (202)
Q Consensus 91 ~~p~~Gd~V~v~Y~g~~~G~~fdss 115 (202)
...+.||.|.|++-+.+||..-|.+
T Consensus 99 ~~Lk~GDvVkIDlG~~idGY~aD~a 123 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHIDGFIALVA 123 (389)
T ss_pred cCcCCCCEEEEEEEEEECCEEEEEE
Confidence 4589999999999888999877654
No 38
>PLN03158 methionine aminopeptidase; Provisional
Probab=23.00 E-value=1e+02 Score=28.59 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=38.5
Q ss_pred CCccCCCCEEEEEEEEEeCCeEEeeccchhhccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCchHHH
Q 028915 90 GPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYS 169 (202)
Q Consensus 90 G~~p~~Gd~V~v~Y~g~~~G~~fdss~~~~~~~~~~~~~~p~~f~vG~~~g~~~~~~~~~~~~g~~~~~~~~~~i~Gle~ 169 (202)
...++.||.|.+...++++|..-|.+ .+|.+|..+.+ .++.++ ....+++.
T Consensus 215 ~r~L~~GDiV~iDvg~~~~GY~aD~t---------------RT~~VG~~~~e--~~~l~e------------~~~eal~~ 265 (396)
T PLN03158 215 ARKLEDGDIVNVDVTVYYKGCHGDLN---------------ETFFVGNVDEA--SRQLVK------------CTYECLEK 265 (396)
T ss_pred CccCCCCCEEEEEEeEEECCEEEeEE---------------eEEEcCCCCHH--HHHHHH------------HHHHHHHH
Confidence 34589999999999988899665544 34566653211 111111 13467777
Q ss_pred HhcCCCcCcE
Q 028915 170 VTEGMKVGGK 179 (202)
Q Consensus 170 aL~gMkvG~k 179 (202)
++..+|+|-+
T Consensus 266 aI~~vkPGv~ 275 (396)
T PLN03158 266 AIAIVKPGVR 275 (396)
T ss_pred HHHHcCCCCC
Confidence 8888888743
No 39
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=22.31 E-value=2.1e+02 Score=25.19 Aligned_cols=12 Identities=50% Similarity=0.634 Sum_probs=7.4
Q ss_pred cchhhHHHHHHH
Q 028915 32 IPISRRAAAILI 43 (202)
Q Consensus 32 ~~vsRr~~~l~~ 43 (202)
..++||..++++
T Consensus 48 ~~~srr~~l~~~ 59 (260)
T PLN00042 48 SAVSRRAALALL 59 (260)
T ss_pred ccccHHHHHHHH
Confidence 448999754443
No 40
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=21.94 E-value=2.1e+02 Score=22.64 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCCCC------ccCCCCEEEEEEE
Q 028915 77 SDGLKYYDIVEGKGP------VAQKGSTVQVHFD 104 (202)
Q Consensus 77 ~sGl~~~~l~~G~G~------~p~~Gd~V~v~Y~ 104 (202)
..|+.+..++.|++. +++.||.|+++++
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE
Confidence 678999999888872 2899999999975
No 41
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=21.67 E-value=1.8e+02 Score=22.93 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=21.5
Q ss_pred CCchHHHHhcCCCcCcEEEEEEcCC
Q 028915 163 PPPAMYSVTEGMKVGGKRTVIVPPE 187 (202)
Q Consensus 163 ~i~Gle~aL~gMkvG~k~~v~IPp~ 187 (202)
+..-|-.+|.|.++|+...+.+|..
T Consensus 117 ~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 117 IDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred CCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 4467889999999999999998854
No 42
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=21.67 E-value=1.7e+02 Score=26.46 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=34.8
Q ss_pred CceeCCCCeEEEEEecCCCCccCCCCEEEEEEEE--E----eCCeEEe-eccc
Q 028915 72 DYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDC--I----FRGITAV-SSRE 117 (202)
Q Consensus 72 ~~~~~~sGl~~~~l~~G~G~~p~~Gd~V~v~Y~g--~----~~G~~fd-ss~~ 117 (202)
+|.+.....+-..|..|+--+...++.|.|.|.. + ..|+.|. ...+
T Consensus 114 dy~Ta~GErR~v~L~DGS~l~Lnt~Sav~vr~~~~~R~VrL~rGea~f~va~d 166 (322)
T COG3712 114 DYATATGERRDVTLADGSRLELNTRSAVDVRFDAGQRRVRLLRGEALFDVAHD 166 (322)
T ss_pred hhhccCCceEEEEeCCCCEEEEcCCCeEEEEecCCeeEEEEecceEEEEecCC
Confidence 6777777777888888887888999999999985 2 4787654 4443
No 43
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=20.62 E-value=1.1e+02 Score=21.18 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.5
Q ss_pred CchHHHHhcCCCcCcEEEEEEcC
Q 028915 164 PPAMYSVTEGMKVGGKRTVIVPP 186 (202)
Q Consensus 164 i~Gle~aL~gMkvG~k~~v~IPp 186 (202)
..-|-.||.|.++|+...+.+|.
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETT
T ss_pred cCHHHHHhcCCCCCCEEEEEeCC
Confidence 46788999999999999999985
Done!