BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028916
MLPFSLSSSPSTRSFSLYNNINQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMK
MVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADV
ISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRQRNAARCYYF
LGDCWLSGFPAFFTCGKLEESI

High Scoring Gene Products

Symbol, full name Information P value
COR314-TM2
AT1G29390
protein from Arabidopsis thaliana 2.2e-34
COR413IM1
AT1G29395
protein from Arabidopsis thaliana 4.6e-34

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028916
        (202 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2013743 - symbol:COR314-TM2 "AT1G29390" specie...   373  2.2e-34   1
TAIR|locus:505006154 - symbol:COR413IM1 "AT1G29395" speci...   370  4.6e-34   1


>TAIR|locus:2013743 [details] [associations]
            symbol:COR314-TM2 "AT1G29390" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=IDA] [GO:0009631 "cold acclimation"
            evidence=IMP] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0031357 "integral to chloroplast inner membrane" evidence=IDA]
            [GO:0070417 "cellular response to cold" evidence=IEP] [GO:0030003
            "cellular cation homeostasis" evidence=RCA] [GO:0042631 "cellular
            response to water deprivation" evidence=RCA] [GO:0070838 "divalent
            metal ion transport" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009631 GO:GO:0070417 GO:GO:0009535
            EMBL:AC068667 GO:GO:0031357 eggNOG:NOG255765 HOGENOM:HOG000082566
            InterPro:IPR008892 Pfam:PF05562 EMBL:AY080813 EMBL:AY123008
            IPI:IPI00522873 IPI:IPI00539422 RefSeq:NP_564327.1
            RefSeq:NP_973936.1 UniGene:At.40751 IntAct:F4I1G5 PRIDE:F4I1G5
            EnsemblPlants:AT1G29390.1 GeneID:839814 KEGG:ath:AT1G29390
            TAIR:At1g29390 OMA:GYLAFQH Uniprot:F4I1G5
        Length = 226

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 78/159 (49%), Positives = 101/159 (63%)

Query:    48 NPLRLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTARNLQWISTISSTVLMLAKGTA 102
             NPLRLS + +    V+    KR+ RG S VCYA+P L+  NLQWISTIS   LM A+GT 
Sbjct:    45 NPLRLSADRQRTATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTG 104

Query:   103 VPKSFLVPLFALQAPADVISWIKGEYGIWXXXXXXXXXXXXXIPGELELPFMALLLVIVA 162
             + KSF+VPLFALQAP  ++SW+KGEYGIW              P ELELPF+ALLLVIVA
Sbjct:   105 IHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVA 164

Query:   163 PHQVLTLRQRNAARCYYFLGDCWLSGFPAFFTCGKLEES 201
             P+QV+++R +           C+L+ F  F   G L+++
Sbjct:   165 PYQVMSIRGKQEGAILSLAISCFLA-FQHFSRAGTLQKA 202


>TAIR|locus:505006154 [details] [associations]
            symbol:COR413IM1 "AT1G29395" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid
            membrane" evidence=ISS;IDA] [GO:0009631 "cold acclimation"
            evidence=IEP;IMP] [GO:0009737 "response to abscisic acid stimulus"
            evidence=IEP;RCA] [GO:0042631 "cellular response to water
            deprivation" evidence=IEP;RCA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0031357 "integral to chloroplast inner membrane"
            evidence=IDA] [GO:0070417 "cellular response to cold" evidence=IEP]
            [GO:0009269 "response to desiccation" evidence=RCA] [GO:0009409
            "response to cold" evidence=RCA] [GO:0009414 "response to water
            deprivation" evidence=RCA] [GO:0009651 "response to salt stress"
            evidence=RCA] [GO:0042538 "hyperosmotic salinity response"
            evidence=RCA] EMBL:CP002684 GO:GO:0009737 GO:GO:0009631
            GO:GO:0070417 GO:GO:0009535 EMBL:AC068667 GO:GO:0042631
            GO:GO:0031357 EMBL:AK118801 EMBL:AY045942 EMBL:AY133821
            EMBL:AY087022 IPI:IPI00531686 PIR:E86416 RefSeq:NP_564328.1
            UniGene:At.24800 UniGene:At.71312 STRING:Q94AL8 PRIDE:Q94AL8
            EnsemblPlants:AT1G29395.1 GeneID:839815 KEGG:ath:AT1G29395
            TAIR:At1g29395 eggNOG:NOG255765 HOGENOM:HOG000082566
            InParanoid:Q94AL8 PhylomeDB:Q94AL8 ProtClustDB:CLSN2688079
            Genevestigator:Q94AL8 InterPro:IPR008892 Pfam:PF05562
            Uniprot:Q94AL8
        Length = 225

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 79/161 (49%), Positives = 104/161 (64%)

Query:    48 NPLRLSVNHEEMKMVT----KRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAV 103
             NPLRLS + +    V+    KR+ RG S VCYA+P++A +LQWISTIS   LMLA+GT +
Sbjct:    45 NPLRLSGDRQRTATVSTRVEKRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGI 104

Query:   104 PKSFLVPLFALQAPADVISWIKGEYGIWXXXXXXXXXXXXXIPGELELPFMALLLVIVAP 163
              KS +VPLFAL AP+ +++WIKGEYG+W              PGELELPF+ALLLVIVAP
Sbjct:   105 HKSVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAP 164

Query:   164 HQVLTLRQRNAARCYYFLGDCWLSGFPAF--FT-CGKLEES 201
             +QV+ +R +             +SGF AF  F+  G LE++
Sbjct:   165 YQVMNIRGKQEGAIIAIA----ISGFLAFQHFSRAGSLEKA 201


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.430    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       158   0.00085  106 3  11 22  0.43    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  153 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.38u 0.12s 12.50t   Elapsed:  00:00:00
  Total cpu time:  12.38u 0.12s 12.50t   Elapsed:  00:00:00
  Start:  Mon May 20 20:35:35 2013   End:  Mon May 20 20:35:35 2013

Back to top