BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028916
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I1G5|CRIM2_ARATH Cold-regulated 413 inner membrane protein 2, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1
Length = 226
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/166 (55%), Positives = 115/166 (69%), Gaps = 6/166 (3%)
Query: 41 SWSSFAFNPLRLSVNHEEMKMVT----KRKSRGFSAVCYASP-LTARNLQWISTISSTVL 95
S S FNPLRLS + + V+ KR+ RG S VCYA+P L+ NLQWISTIS L
Sbjct: 38 STSVVCFNPLRLSADRQRTATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVAL 97
Query: 96 MLAKGTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMA 155
M A+GT + KSF+VPLFALQAP ++SW+KGEYGIWAAFLALL RLFF P ELELPF+A
Sbjct: 98 MFARGTGIHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIA 157
Query: 156 LLLVIVAPHQVLTLRQRNAARCYYFLGDCWLSGFPAFFTCGKLEES 201
LLLVIVAP+QV+++R + C+L+ F F G L+++
Sbjct: 158 LLLVIVAPYQVMSIRGKQEGAILSLAISCFLA-FQHFSRAGTLQKA 202
>sp|Q94AL8|CRIM1_ARATH Cold-regulated 413 inner membrane protein 1, chloroplastic
OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1
Length = 225
Score = 175 bits (443), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 129/198 (65%), Gaps = 11/198 (5%)
Query: 11 STRSFSLYNN---INQPILTRQTKLFGSRSFSSSWSSFAFNPLRLSVNHEEMKMVT---- 63
S+R SL++ ++ + +R + L G S FNPLRLS + + V+
Sbjct: 8 SSRIVSLHHQKPFLSLKLRSRPSDLSG---LGRHTSPVCFNPLRLSGDRQRTATVSTRVE 64
Query: 64 KRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAPADVISW 123
KR+ RG S VCYA+P++A +LQWISTIS LMLA+GT + KS +VPLFAL AP+ +++W
Sbjct: 65 KRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFALHAPSSIVAW 124
Query: 124 IKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRQRNAARCYYFLGD 183
IKGEYG+WAAFLAL+ RLFF PGELELPF+ALLLVIVAP+QV+ +R +
Sbjct: 125 IKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQEGAIIAIAIS 184
Query: 184 CWLSGFPAFFTCGKLEES 201
+L+ F F G LE++
Sbjct: 185 GFLA-FQHFSRAGSLEKA 201
>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis
thaliana GN=COR413PM2 PE=2 SV=1
Length = 203
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 11/118 (9%)
Query: 55 NHEEMKMVTKRKSRGFSAVCYASPLT--ARNLQWISTISSTVLMLAK----GTAVPKSFL 108
+ EE+K+ K+ FS V L L+++++ ++ L++ T + S L
Sbjct: 23 DMEELKVAAKKL---FSDVSKLGGLGFGVSFLKFLASFAAIYLLILDRTNWKTKMLTSLL 79
Query: 109 VPLFALQAPADVISWIKGEYGIWAAFLALLVRLFF--FIPGELELPFMALLLVIVAPH 164
+P L P+ + +++ G+ G W AF+A+++RLFF P LE+P +LL++V+PH
Sbjct: 80 IPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILLLVVSPH 137
>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis
thaliana GN=At4g37220 PE=2 SV=2
Length = 202
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 84 LQWISTISSTVLMLAK----GTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLV 139
LQW ++I + L++ T + + LVP P+ + + G++G W A +A++V
Sbjct: 50 LQWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIV 109
Query: 140 RLFF--FIPGELELPFMALLLVIVAPHQVL-TLRQRNAARCYYFLGDCWL 186
RLFF P LE+P +L+V+V+P + TLR+ + C+L
Sbjct: 110 RLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYL 159
>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis
thaliana GN=COR413PM1 PE=1 SV=1
Length = 197
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 84 LQWISTISSTVLMLAK----GTAVPKSFLVPLFALQAPADVISWIKGEYGIWAAFLALLV 139
L+W+++I++ L++ T + S L+P P+ + +GE G W AF+A++V
Sbjct: 48 LEWVASIAAIYLLVLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVV 107
Query: 140 RLFF 143
+LFF
Sbjct: 108 QLFF 111
>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis
thaliana GN=At2g23680 PE=2 SV=1
Length = 189
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 84 LQWISTISSTVLMLAKGTA------VPKSFLVPLFALQAPADVISWIKGEYGIWAAFLAL 137
L+W+++I + LM+ T + S L P P + ++ G W A L +
Sbjct: 31 LRWLASIVAVFLMILDQTKWKYSNNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTV 90
Query: 138 LVRLFFFIPGE----LELPFMALLLVIVAPHQVLTLRQRNAARCYYFLGD-CWLSGF 189
++RL F+P LE+P +LL++V P + + R+ R Y GD C L+ F
Sbjct: 91 ILRL--FLPNHFHESLEIPGATILLIVVTPSDIGAIF-RDDLR--YTGGDVCLLTSF 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,849,607
Number of Sequences: 539616
Number of extensions: 2464078
Number of successful extensions: 7077
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7063
Number of HSP's gapped (non-prelim): 12
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)