Query 028916
Match_columns 202
No_of_seqs 67 out of 69
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 04:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05562 WCOR413: Cold acclima 100.0 2.5E-63 5.4E-68 417.6 4.1 156 44-202 8-171 (187)
2 COG5416 Uncharacterized integr 25.6 74 0.0016 25.5 2.8 46 115-160 11-68 (98)
3 PRK11909 cobalt transport prot 22.9 51 0.0011 28.8 1.6 36 128-163 78-118 (230)
4 PF10990 DUF2809: Protein of u 19.6 1.2E+02 0.0026 23.0 2.9 54 122-175 8-70 (91)
5 COG3594 NolL Fucose 4-O-acetyl 19.4 78 0.0017 29.9 2.1 25 105-129 72-96 (343)
6 PRK06099 F0F1 ATP synthase sub 19.0 84 0.0018 25.5 2.0 31 115-145 65-95 (126)
7 PF10724 DUF2516: Protein of u 16.8 53 0.0011 25.8 0.3 21 81-101 67-87 (100)
8 PF04956 TrbC: TrbC/VIRB2 fami 16.5 86 0.0019 22.8 1.4 27 117-143 42-68 (99)
9 PF10167 NEP: Uncharacterised 16.1 46 0.00099 26.8 -0.1 13 182-195 30-42 (118)
10 COG0395 UgpE ABC-type sugar tr 15.6 1.1E+02 0.0024 27.4 2.1 17 134-150 157-174 (281)
No 1
>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins.
Probab=100.00 E-value=2.5e-63 Score=417.64 Aligned_cols=156 Identities=35% Similarity=0.631 Sum_probs=143.3
Q ss_pred cccccceeeccCCcceeEEeeecCCCceeEeec-CCCchhhHHHHHHHHHhhH-hhhc---CCCCCchhHHHHHHhhCCh
Q 028916 44 SFAFNPLRLSVNHEEMKMVTKRKSRGFSAVCYA-SPLTARNLQWISTISSTVL-MLAK---GTAVPKSFLVPLFALQAPA 118 (202)
Q Consensus 44 ~~~fnpl~~~~~~~~~~~~~~~~~~g~~~~c~a-~~~~t~~LqWiasiAAi~L-iLdr---~TniltSLLVPyialslPs 118 (202)
...+|+..+++|-.+.+. ..|+++..++|++ +++++++|||++++||+|| ++|| ||||+|||||||+|+|+|+
T Consensus 8 ~~~~~~~~l~sd~~~l~~--aa~kl~~~a~~~~~~~~~t~~lqWias~aAi~LlildrtnwkTniltslLVPyi~lslPs 85 (187)
T PF05562_consen 8 SSEFAAALLSSDLQELGM--AAKKLASHAICLGSLGFGTSFLQWIASIAAIYLLILDRTNWKTNILTSLLVPYIFLSLPS 85 (187)
T ss_pred cchhhhhhhccCHHHHHH--HHHhhhcceeeeccccccHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHHhCcH
Confidence 367889999987544333 3466788899995 8999999999999999999 5555 6999999999999999999
Q ss_pred hhhhhhcCcchhHHHHHHHHHHHhh--cCCCccchhhhhhhhhhccchhhhh-hcccceeeeeeehhhhhhcccchhhcc
Q 028916 119 DVISWIKGEYGIWAAFLALLVRLFF--FIPGELELPFMALLLVIVAPHQVLT-LRQRNAARCYYFLGDCWLSGFPAFFTC 195 (202)
Q Consensus 119 ~vf~~iRGe~G~WiAFlAvvlRLFF--~fP~eLElP~a~iLLvVVAP~~i~~-lRgs~~G~vI~L~IacYLl~~qHir~~ 195 (202)
++|+|+|||||+||||+|+++|||| |||||||||++++||+||||+|+|+ +||+|+|++||++|||||+ |||||++
T Consensus 86 ~if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R~~~~G~vi~l~I~~YLl-~qHi~~~ 164 (187)
T PF05562_consen 86 VIFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFRGSQIGAVICLAIACYLL-QQHIRAS 164 (187)
T ss_pred HHHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhccCCeeehhHHHHHHHHHH-HHHHHhc
Confidence 9999999999999999999999999 6999999999999999999999999 5999999999999999999 9999999
Q ss_pred CCcccCC
Q 028916 196 GKLEESI 202 (202)
Q Consensus 196 GG~r~Af 202 (202)
||+||||
T Consensus 165 Gg~r~aF 171 (187)
T PF05562_consen 165 GGFRNAF 171 (187)
T ss_pred CChhhhh
Confidence 9999997
No 2
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=25.55 E-value=74 Score=25.48 Aligned_cols=46 Identities=33% Similarity=0.593 Sum_probs=32.1
Q ss_pred hCChhhhhhhcCcchhHHH-HHHHHHHHhh-----------cCCCccchhhhhhhhhh
Q 028916 115 QAPADVISWIKGEYGIWAA-FLALLVRLFF-----------FIPGELELPFMALLLVI 160 (202)
Q Consensus 115 slPs~vf~~iRGe~G~WiA-FlAvvlRLFF-----------~fP~eLElP~a~iLLvV 160 (202)
..|.+...=.|+.+..|++ ++..++=+-| .+++-+|+|..+++|..
T Consensus 11 g~~~v~~~r~~~~w~vi~~gilillLllifav~Nt~~V~~~~lfg~~~~PLilvil~s 68 (98)
T COG5416 11 GEPAVVRKRMKGQWTVIIVGILILLLLLIFAVINTDSVEFNYLFGQWELPLILVILGA 68 (98)
T ss_pred CCCcchhhhccceeeHHHHHHHHHHHHHHHHHhccCceEEEeecchhhhhHHHHHHHH
Confidence 4466666778888888886 5555555544 26667999998877654
No 3
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=22.88 E-value=51 Score=28.76 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHhh-----cCCCccchhhhhhhhhhccc
Q 028916 128 YGIWAAFLALLVRLFF-----FIPGELELPFMALLLVIVAP 163 (202)
Q Consensus 128 ~G~WiAFlAvvlRLFF-----~fP~eLElP~a~iLLvVVAP 163 (202)
+|-|.|+++..+++++ ..=|+.+++.-.+...++.|
T Consensus 78 lGp~~a~la~~l~lllqal~fg~GGi~~LG~N~l~ma~v~~ 118 (230)
T PRK11909 78 LGPWAAVISISVALVIQALLFGDGGITAIGANCFNMAFVLP 118 (230)
T ss_pred HhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 4778999999888876 33456788887776666666
No 4
>PF10990 DUF2809: Protein of unknown function (DUF2809); InterPro: IPR021257 Some members in this family of proteins are annotated as yjgA however currently no function for the protein is known.
Probab=19.59 E-value=1.2e+02 Score=23.04 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=33.1
Q ss_pred hhhcCcch--hHHHHHHHHHHHhhcCCCccchhhhhhhhhh-------ccchhhhhhccccee
Q 028916 122 SWIKGEYG--IWAAFLALLVRLFFFIPGELELPFMALLLVI-------VAPHQVLTLRQRNAA 175 (202)
Q Consensus 122 ~~iRGe~G--~WiAFlAvvlRLFF~fP~eLElP~a~iLLvV-------VAP~~i~~lRgs~~G 175 (202)
+|+|+-.| .|.+++-..+|.|+.......++...++.-. .-+-.+-.+|++..|
T Consensus 8 ~~ir~y~GDvL~~~~vy~~~~~~~p~~~~~~~~~~~l~~~~~IE~~Ql~~~~~~~~~r~~~~g 70 (91)
T PF10990_consen 8 GFIRPYLGDVLYVVLVYCLVRFFFPRKSPKRLAIAALLFAFAIEFLQLYHAPWLLGIRSTTLG 70 (91)
T ss_pred hHHhhcccHHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHHhHHHHHcccccchh
Confidence 57787778 8999999999999944333344444333322 112223347877653
No 5
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=19.45 E-value=78 Score=29.90 Aligned_cols=25 Identities=8% Similarity=0.356 Sum_probs=19.3
Q ss_pred chhHHHHHHhhCChhhhhhhcCcch
Q 028916 105 KSFLVPLFALQAPADVISWIKGEYG 129 (202)
Q Consensus 105 tSLLVPyialslPs~vf~~iRGe~G 129 (202)
++|+|||+++++=..++..++....
T Consensus 72 ~tLivPyi~f~li~~I~~~~~~~~~ 96 (343)
T COG3594 72 RTLIVPYIFFFLIYSILYFLLRKFN 96 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999988888776665544
No 6
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=18.99 E-value=84 Score=25.51 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=24.5
Q ss_pred hCChhhhhhhcCcchhHHHHHHHHHHHhhcC
Q 028916 115 QAPADVISWIKGEYGIWAAFLALLVRLFFFI 145 (202)
Q Consensus 115 slPs~vf~~iRGe~G~WiAFlAvvlRLFF~f 145 (202)
+.+..+-++-+||-+||+.-+++.+=-|-.+
T Consensus 65 ~~~~~~~sFy~GE~~K~ilTivlf~laf~~~ 95 (126)
T PRK06099 65 KNSSKLTAFYRGEAIKFILTIVLIVIAFKLL 95 (126)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 7888899999999999988666665555444
No 7
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=16.81 E-value=53 Score=25.83 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHhhHhhhcCC
Q 028916 81 ARNLQWISTISSTVLMLAKGT 101 (202)
Q Consensus 81 t~~LqWiasiAAi~LiLdr~T 101 (202)
..++.|++.+++.+-+.|=|-
T Consensus 67 ~~~l~lig~vaa~VYl~DVRP 87 (100)
T PF10724_consen 67 LGFLGLIGAVAAGVYLVDVRP 87 (100)
T ss_pred hHHHHHHHHHHhhheeecccH
Confidence 578999998888877777653
No 8
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=16.51 E-value=86 Score=22.76 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=22.1
Q ss_pred ChhhhhhhcCcchhHHHHHHHHHHHhh
Q 028916 117 PADVISWIKGEYGIWAAFLALLVRLFF 143 (202)
Q Consensus 117 Ps~vf~~iRGe~G~WiAFlAvvlRLFF 143 (202)
=..+.+++.|..|+.++.+++++--+-
T Consensus 42 l~~i~~~l~gp~~~~i~~i~ii~~g~~ 68 (99)
T PF04956_consen 42 LCKIIDWLTGPIGKAIAIIAIIVAGIM 68 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999988765544
No 9
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=16.14 E-value=46 Score=26.82 Aligned_cols=13 Identities=0% Similarity=-0.325 Sum_probs=11.2
Q ss_pred hhhhhcccchhhcc
Q 028916 182 GDCWLSGFPAFFTC 195 (202)
Q Consensus 182 IacYLl~~qHir~~ 195 (202)
+|.|=+ |||+|++
T Consensus 30 lgLYrl-QeHvrks 42 (118)
T PF10167_consen 30 LGLYRL-QEHVRKS 42 (118)
T ss_pred HHHHHH-HHHHHHH
Confidence 588999 9999874
No 10
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=15.64 E-value=1.1e+02 Score=27.35 Aligned_cols=17 Identities=59% Similarity=0.968 Sum_probs=12.5
Q ss_pred HHHHHHHHhh-cCCCccc
Q 028916 134 FLALLVRLFF-FIPGELE 150 (202)
Q Consensus 134 FlAvvlRLFF-~fP~eLE 150 (202)
|-..++|=|| .+|+|||
T Consensus 157 f~ifl~~~ff~~iP~ele 174 (281)
T COG0395 157 FAIFLLRQFFRTIPKELE 174 (281)
T ss_pred HHHHHHHHHHHhCCHHHH
Confidence 3344778888 8999976
Done!