Query 028916
Match_columns 202
No_of_seqs 67 out of 69
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 06:56:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3esi_A Uncharacterized protein 8.7 1.1E+02 0.0039 23.3 1.1 16 144-159 36-51 (129)
2 3emu_A Leucine rich repeat and 8.6 2.5E+02 0.0085 20.8 2.9 30 68-102 87-116 (161)
3 3izx_B Capsid protein VP1; cyt 7.2 2.2E+02 0.0074 30.2 2.6 37 111-153 515-552 (1333)
4 3s4e_A Dual specificity protei 7.2 2.8E+02 0.0096 19.7 2.6 30 68-102 81-110 (144)
5 2f3y_B Voltage-dependent L-typ 6.5 95 0.0033 18.8 -0.2 11 183-194 4-14 (26)
6 3ezz_A Dual specificity protei 6.4 3.4E+02 0.012 19.1 2.7 30 68-102 81-110 (144)
7 4h4g_A (3R)-hydroxymyristoyl-[ 6.0 1.9E+02 0.0064 22.2 1.1 16 142-157 55-72 (160)
8 3ljb_A Interferon-induced GTP- 5.6 1.6E+02 0.0054 25.2 0.6 25 119-143 37-61 (271)
9 4b8u_A 3-hydroxydecanoyl-[acyl 5.4 2E+02 0.007 23.0 1.1 14 144-157 70-83 (171)
10 3phf_B Envelope glycoprotein L 5.2 2E+02 0.0069 22.3 0.9 19 133-151 65-84 (108)
No 1
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=8.72 E-value=1.1e+02 Score=23.32 Aligned_cols=16 Identities=31% Similarity=0.218 Sum_probs=13.8
Q ss_pred cCCCccchhhhhhhhh
Q 028916 144 FIPGELELPFMALLLV 159 (202)
Q Consensus 144 ~fP~eLElP~a~iLLv 159 (202)
|||+.--+|+.+++=.
T Consensus 36 HFPg~PVmPGVl~iE~ 51 (129)
T 3esi_A 36 HFTGQPLLPGVAQLDW 51 (129)
T ss_dssp TTBSSCCCCHHHHHHH
T ss_pred CCCCCCcCCcHHHHHH
Confidence 9999999999987754
No 2
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=8.62 E-value=2.5e+02 Score=20.78 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=19.7
Q ss_pred CCceeEeecCCCchhhHHHHHHHHHhhHhhhcCCC
Q 028916 68 RGFSAVCYASPLTARNLQWISTISSTVLMLAKGTA 102 (202)
Q Consensus 68 ~g~~~~c~a~~~~t~~LqWiasiAAi~LiLdr~Tn 102 (202)
.|--.|+|.++.+.+ ++++++|||...+-+
T Consensus 87 ~~~VlVHC~~G~sRS-----~~vv~ayLm~~~~~s 116 (161)
T 3emu_A 87 KEGVLIISGTGVNKA-----PAIVIAFLMYYQRLS 116 (161)
T ss_dssp TCEEEEEESSSSSHH-----HHHHHHHHHHHTTCC
T ss_pred CCeEEEEcCCCCcHH-----HHHHHHHHHHHhCCC
Confidence 344445666777766 568888998766544
No 3
>3izx_B Capsid protein VP1; cytoplasmic polyhedrosis virus, 3D reconstruction, cryoem, F model; 3.10A {Bombyx mori cypovirus 1} PDB: 3cnf_A 3iz3_B 3j17_B*
Probab=7.23 E-value=2.2e+02 Score=30.18 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHhhCChhhhhhhcCcchhHHHHHHHHHHHhh-cCCCccchhh
Q 028916 111 LFALQAPADVISWIKGEYGIWAAFLALLVRLFF-FIPGELELPF 153 (202)
Q Consensus 111 yialslPs~vf~~iRGe~G~WiAFlAvvlRLFF-~fP~eLElP~ 153 (202)
++|+.+=..++.|.+|++|+ ++.|||+ ++|+|++.=.
T Consensus 515 ILffIffP~la~~~~g~I~n------~Ll~l~~~~~p~Ey~~FI 552 (1333)
T 3izx_B 515 ILFALFFPTEFNRIKGDIQN------VLLLFFSRWYPVEYGIFV 552 (1333)
T ss_dssp HHHHHHSHHHHHHTTTTTHH------HHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHchHHHHHhhhHHHH------HHHHHHHHHChHHHHHHh
Confidence 45666666789999999985 7889999 8999876533
No 4
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=7.19 E-value=2.8e+02 Score=19.68 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=19.0
Q ss_pred CCceeEeecCCCchhhHHHHHHHHHhhHhhhcCCC
Q 028916 68 RGFSAVCYASPLTARNLQWISTISSTVLMLAKGTA 102 (202)
Q Consensus 68 ~g~~~~c~a~~~~t~~LqWiasiAAi~LiLdr~Tn 102 (202)
.|--.++|.++.+.+ ++++++|||...+-+
T Consensus 81 ~~~VlVHC~~G~sRS-----~~~v~ayLm~~~~~~ 110 (144)
T 3s4e_A 81 DGVVLVHSNAGVSRA-----AAIVIGFLMNSEQTS 110 (144)
T ss_dssp TCCEEEECSSSSSHH-----HHHHHHHHHHHHCCC
T ss_pred CCeEEEEcCCCCchH-----HHHHHHHHHHHcCCC
Confidence 344445556667765 567888888766543
No 5
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=6.51 E-value=95 Score=18.81 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=8.9
Q ss_pred hhhhcccchhhc
Q 028916 183 DCWLSGFPAFFT 194 (202)
Q Consensus 183 acYLl~~qHir~ 194 (202)
+-||. |+|+|+
T Consensus 4 at~LI-qdyfRk 14 (26)
T 2f3y_B 4 ATFLI-QEYFRK 14 (26)
T ss_pred hhhhH-HHHHHH
Confidence 56888 999985
No 6
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=6.44 E-value=3.4e+02 Score=19.06 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=18.3
Q ss_pred CCceeEeecCCCchhhHHHHHHHHHhhHhhhcCCC
Q 028916 68 RGFSAVCYASPLTARNLQWISTISSTVLMLAKGTA 102 (202)
Q Consensus 68 ~g~~~~c~a~~~~t~~LqWiasiAAi~LiLdr~Tn 102 (202)
.|--.+.|.++.+.+ ++++++|||...+-+
T Consensus 81 ~~~VlVHC~~G~~RS-----~~~~~aylm~~~~~~ 110 (144)
T 3ezz_A 81 RGRVLVHSQAGISRS-----ATICLAYLMMKKRVR 110 (144)
T ss_dssp TCCEEEEESSSSSHH-----HHHHHHHHHHHHTCC
T ss_pred CCeEEEECCCCCChh-----HHHHHHHHHHHcCCC
Confidence 344445555666655 567788888765543
No 7
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=6.01 E-value=1.9e+02 Score=22.19 Aligned_cols=16 Identities=25% Similarity=0.600 Sum_probs=13.1
Q ss_pred hh--cCCCccchhhhhhh
Q 028916 142 FF--FIPGELELPFMALL 157 (202)
Q Consensus 142 FF--~fP~eLElP~a~iL 157 (202)
|| |||+.=-+|+.+++
T Consensus 55 ff~gHFp~~PvmPGvL~i 72 (160)
T 4h4g_A 55 FFTGHFPKRPVMPGVLII 72 (160)
T ss_dssp GGGTSCTTSCCCCHHHHH
T ss_pred cccCCCCCCCcCcHHHHH
Confidence 55 99998889998765
No 8
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=5.62 E-value=1.6e+02 Score=25.19 Aligned_cols=25 Identities=8% Similarity=0.254 Sum_probs=20.5
Q ss_pred hhhhhhcCcchhHHHHHHHHHHHhh
Q 028916 119 DVISWIKGEYGIWAAFLALLVRLFF 143 (202)
Q Consensus 119 ~vf~~iRGe~G~WiAFlAvvlRLFF 143 (202)
-||+-+|.|+++|..-|--...-|-
T Consensus 37 rlf~~lr~eF~~w~~~l~~~~~~~~ 61 (271)
T 3ljb_A 37 RLFTRLRHEFHKWSTIIENNFQEGH 61 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhccchH
Confidence 4899999999999998877655554
No 9
>4b8u_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; lyase, fatty acid biosynthesis, inhibitor, bacterial virulen discovery; HET: IBK; 2.76A {Pseudomonas aeruginosa}
Probab=5.45 E-value=2e+02 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=12.0
Q ss_pred cCCCccchhhhhhh
Q 028916 144 FIPGELELPFMALL 157 (202)
Q Consensus 144 ~fP~eLElP~a~iL 157 (202)
|||+.=-||+.+++
T Consensus 70 HFp~~PVMPGvL~~ 83 (171)
T 4b8u_A 70 HFEGDPVMPGCLGL 83 (171)
T ss_dssp SCTTSCCCCHHHHH
T ss_pred cCCCCCCCCccHHH
Confidence 99998889998764
No 10
>3phf_B Envelope glycoprotein L; virus entry, membrane fusion, viral protein; 3.58A {Human herpesvirus 4}
Probab=5.18 E-value=2e+02 Score=22.27 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhcCCCc-cch
Q 028916 133 AFLALLVRLFFFIPGE-LEL 151 (202)
Q Consensus 133 AFlAvvlRLFF~fP~e-LEl 151 (202)
-|+||+=|++...||+ +|+
T Consensus 65 FllaVl~r~~~~~~~~l~el 84 (108)
T 3phf_B 65 FFISILKRSSSALTGHLREL 84 (108)
T ss_dssp HHHHHHHTTGGGCCTHHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHH
Confidence 3677888888877887 554
Done!