Query 028916
Match_columns 202
No_of_seqs 67 out of 69
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 06:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028916.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028916hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1neia_ d.253.1.1 (A:) Hypothe 10.7 23 0.0017 23.4 -0.2 29 98-126 20-48 (60)
2 d1omca_ g.3.6.1 (A:) Conotoxin 7.3 79 0.0057 17.7 1.1 16 36-51 2-17 (27)
3 d1jb0j_ f.23.18.1 (J:) Subunit 6.4 1.7E+02 0.012 17.7 2.5 23 130-152 17-40 (41)
4 d1yyda1 a.93.1.1 (A:1-357) Fun 6.2 1E+02 0.0076 25.2 1.9 20 122-144 27-46 (357)
5 d1di0a_ c.16.1.1 (A:) Lumazine 5.6 85 0.0062 22.8 0.8 15 144-158 42-56 (148)
6 d1kz1a_ c.16.1.1 (A:) Lumazine 5.4 88 0.0064 22.8 0.8 15 144-158 50-64 (150)
7 d1b34a_ b.38.1.1 (A:) D1 core 4.6 94 0.0069 20.0 0.4 10 144-153 68-77 (80)
8 d1nqua_ c.16.1.1 (A:) Lumazine 4.5 1.1E+02 0.0081 22.3 0.8 15 144-158 52-66 (154)
9 d1mkpa_ c.45.1.1 (A:) Mapk pho 4.5 1.9E+02 0.014 18.9 2.1 29 68-101 83-111 (144)
10 d1rvv1_ c.16.1.1 (1:) Lumazine 4.5 1.1E+02 0.0081 22.3 0.8 13 144-156 52-64 (154)
No 1
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=10.72 E-value=23 Score=23.39 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.3
Q ss_pred hcCCCCCchhHHHHHHhhCChhhhhhhcC
Q 028916 98 AKGTAVPKSFLVPLFALQAPADVISWIKG 126 (202)
Q Consensus 98 dr~TniltSLLVPyialslPs~vf~~iRG 126 (202)
|+.+..+-.|++|-++-..--+++|.+||
T Consensus 20 D~e~~~~~~L~~p~~aae~vKdLvNiVRg 48 (60)
T d1neia_ 20 DYETETPMTLLVPEVAAEVIKDLVNTVRS 48 (60)
T ss_dssp EEECCCSGGGTCHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHhcChHHHHHHHHHHHHHHhc
Confidence 55677778899999998888889998887
No 2
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=7.27 E-value=79 Score=17.67 Aligned_cols=16 Identities=38% Similarity=0.322 Sum_probs=12.8
Q ss_pred cCCCCCCCccccccee
Q 028916 36 RSFSSSWSSFAFNPLR 51 (202)
Q Consensus 36 ~~~~~~~s~~~fnpl~ 51 (202)
.||++|-||-.||=-|
T Consensus 2 kspgsscsptsynccr 17 (27)
T d1omca_ 2 KSPGSSCSPTSYNCCR 17 (27)
T ss_dssp BCTTCBCCTTTTCBSS
T ss_pred CCCCCcCCCcccchhc
Confidence 4788999998888655
No 3
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=6.41 E-value=1.7e+02 Score=17.73 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHhh-cCCCccchh
Q 028916 130 IWAAFLALLVRLFF-FIPGELELP 152 (202)
Q Consensus 130 ~WiAFlAvvlRLFF-~fP~eLElP 152 (202)
.|..|.|.++==+- .|||-|-.|
T Consensus 17 ~w~~~tAG~lIEiNRFfPD~L~~P 40 (41)
T d1jb0j_ 17 IWMTITAGILIEFNRFYPDLLFHP 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred HHHHHHHHHHHHHHhhCchhhcCC
Confidence 58888887764444 569987766
No 4
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Probab=6.16 E-value=1e+02 Score=25.18 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=14.9
Q ss_pred hhhcCcchhHHHHHHHHHHHhhc
Q 028916 122 SWIKGEYGIWAAFLALLVRLFFF 144 (202)
Q Consensus 122 ~~iRGe~G~WiAFlAvvlRLFF~ 144 (202)
+.++||.|.+.+ -++||+||
T Consensus 27 ~~~~~~c~~~A~---~~lRL~FH 46 (357)
T d1yyda1 27 TIFQNECGEDAH---EVIRLTFH 46 (357)
T ss_dssp HTTTTSSSHHHH---HHHHHHHH
T ss_pred HHhcCCccHHHH---HHHHHHHh
Confidence 456788887644 57999996
No 5
>d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]}
Probab=5.56 E-value=85 Score=22.77 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=11.9
Q ss_pred cCCCccchhhhhhhh
Q 028916 144 FIPGELELPFMALLL 158 (202)
Q Consensus 144 ~fP~eLElP~a~iLL 158 (202)
..||-+|+|.++=-+
T Consensus 42 ~VPGa~EiP~aa~~l 56 (148)
T d1di0a_ 42 DVPGAYEIPLHAKTL 56 (148)
T ss_dssp EESSGGGHHHHHHHH
T ss_pred EcCChhhhHHHHHHH
Confidence 579999999986543
No 6
>d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=5.35 E-value=88 Score=22.77 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=11.6
Q ss_pred cCCCccchhhhhhhh
Q 028916 144 FIPGELELPFMALLL 158 (202)
Q Consensus 144 ~fP~eLElP~a~iLL 158 (202)
..||-+|+|.++=.+
T Consensus 50 ~VPGa~EiP~~~~~~ 64 (150)
T d1kz1a_ 50 SVPGSWELPQGIRAS 64 (150)
T ss_dssp ECSSGGGHHHHHHHH
T ss_pred EeCCHHHHHHHHHHH
Confidence 479999999876443
No 7
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.55 E-value=94 Score=20.01 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=5.8
Q ss_pred cCCCccchhh
Q 028916 144 FIPGELELPF 153 (202)
Q Consensus 144 ~fP~eLElP~ 153 (202)
++||.++++-
T Consensus 68 ~lPd~l~~~~ 77 (80)
T d1b34a_ 68 ILPDSLPLDT 77 (80)
T ss_dssp ECCTTCCHHH
T ss_pred ECCCCccccc
Confidence 5666665543
No 8
>d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]}
Probab=4.50 E-value=1.1e+02 Score=22.29 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=11.8
Q ss_pred cCCCccchhhhhhhh
Q 028916 144 FIPGELELPFMALLL 158 (202)
Q Consensus 144 ~fP~eLElP~a~iLL 158 (202)
..||-+|+|.++=.+
T Consensus 52 ~VPGa~EiP~~~~~l 66 (154)
T d1nqua_ 52 RVPGSWEIPVAAGEL 66 (154)
T ss_dssp EESSGGGHHHHHHHH
T ss_pred EeCCHHHhHHHHHHH
Confidence 579999999887443
No 9
>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1 (mkp3) [TaxId: 9606]}
Probab=4.48 E-value=1.9e+02 Score=18.94 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=18.5
Q ss_pred CCceeEeecCCCchhhHHHHHHHHHhhHhhhcCC
Q 028916 68 RGFSAVCYASPLTARNLQWISTISSTVLMLAKGT 101 (202)
Q Consensus 68 ~g~~~~c~a~~~~t~~LqWiasiAAi~LiLdr~T 101 (202)
.|--.+||.++.+.+ ++++++|||-.++-
T Consensus 83 ~~~VlVHC~~G~~RS-----~~vv~aYLm~~~~~ 111 (144)
T d1mkpa_ 83 NCGVLVHSLAGISRS-----VTVTVAYLMQKLNL 111 (144)
T ss_dssp TCEEEEECSSCSHHH-----HHHHHHHHHHHHTC
T ss_pred cceEEEEecccccch-----HHHHHHHHHHHhCC
Confidence 444455776766665 56777788776543
No 10
>d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]}
Probab=4.47 E-value=1.1e+02 Score=22.26 Aligned_cols=13 Identities=46% Similarity=1.114 Sum_probs=10.5
Q ss_pred cCCCccchhhhhh
Q 028916 144 FIPGELELPFMAL 156 (202)
Q Consensus 144 ~fP~eLElP~a~i 156 (202)
..||-+|+|.++=
T Consensus 52 ~VPGa~EiP~~~~ 64 (154)
T d1rvv1_ 52 WVPGAFEIPFAAK 64 (154)
T ss_dssp EESSGGGHHHHHH
T ss_pred EECceeeHHHHHH
Confidence 5799999997654
Done!