Query 028917
Match_columns 202
No_of_seqs 232 out of 2014
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:34:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03767 NAD(P)H:quinone oxido 100.0 3.8E-40 8.2E-45 252.8 22.8 199 1-202 1-200 (200)
2 TIGR01755 flav_wrbA NAD(P)H:qu 100.0 9.4E-40 2E-44 249.8 22.0 195 4-200 2-197 (197)
3 KOG3135 1,4-benzoquinone reduc 100.0 5.9E-38 1.3E-42 224.1 19.4 200 2-202 1-202 (203)
4 COG0655 WrbA Multimeric flavod 100.0 7.4E-29 1.6E-33 191.2 19.1 194 4-201 2-206 (207)
5 PRK06756 flavodoxin; Provision 100.0 1.1E-27 2.4E-32 175.5 16.7 146 1-197 1-147 (148)
6 PRK05569 flavodoxin; Provision 100.0 1.5E-27 3.2E-32 173.4 16.5 138 1-194 1-140 (141)
7 PRK05568 flavodoxin; Provision 100.0 3.6E-27 7.7E-32 171.6 16.8 138 3-195 2-141 (142)
8 PRK06703 flavodoxin; Provision 99.9 8.9E-26 1.9E-30 165.9 16.3 149 1-201 1-151 (151)
9 PRK06242 flavodoxin; Provision 99.9 1.3E-25 2.9E-30 164.8 13.6 146 4-196 2-149 (150)
10 TIGR01753 flav_short flavodoxi 99.9 6.1E-25 1.3E-29 159.2 15.6 138 5-194 1-140 (140)
11 PRK07308 flavodoxin; Validated 99.9 1.3E-24 2.9E-29 158.8 15.5 144 1-196 1-145 (146)
12 PF03358 FMN_red: NADPH-depend 99.9 5.1E-25 1.1E-29 162.0 10.9 139 3-147 1-144 (152)
13 PRK11921 metallo-beta-lactamas 99.9 1.6E-24 3.6E-29 181.9 15.2 144 3-197 248-393 (394)
14 PRK05452 anaerobic nitric oxid 99.9 1.4E-23 3E-28 179.6 16.0 144 3-198 252-397 (479)
15 PRK09267 flavodoxin FldA; Vali 99.9 1.8E-22 3.9E-27 151.0 18.2 161 1-195 1-165 (169)
16 PRK10569 NAD(P)H-dependent FMN 99.9 9.5E-23 2.1E-27 154.9 14.9 169 4-198 2-173 (191)
17 TIGR03566 FMN_reduc_MsuE FMN r 99.9 1.9E-21 4.1E-26 146.1 12.6 169 4-198 1-172 (174)
18 TIGR03567 FMN_reduc_SsuE FMN r 99.9 3.8E-21 8.2E-26 144.1 12.9 167 4-195 1-170 (171)
19 PRK12359 flavodoxin FldB; Prov 99.9 5E-20 1.1E-24 137.2 18.5 162 4-197 2-168 (172)
20 COG0426 FpaA Uncharacterized f 99.9 5.2E-21 1.1E-25 156.6 12.6 141 4-195 248-388 (388)
21 PRK00170 azoreductase; Reviewe 99.9 5.4E-21 1.2E-25 146.8 11.8 141 1-144 1-170 (201)
22 TIGR01752 flav_long flavodoxin 99.8 9.8E-20 2.1E-24 135.9 15.2 117 4-148 1-120 (167)
23 PRK01355 azoreductase; Reviewe 99.8 4.1E-20 8.8E-25 141.7 12.5 142 1-144 1-164 (199)
24 PRK09271 flavodoxin; Provision 99.8 2.4E-19 5.2E-24 132.9 15.6 143 4-198 2-148 (160)
25 PRK09739 hypothetical protein; 99.8 4.4E-20 9.6E-25 141.6 9.9 115 3-120 4-132 (199)
26 TIGR02690 resist_ArsH arsenica 99.8 1.6E-18 3.4E-23 133.5 15.9 172 3-201 27-204 (219)
27 TIGR01754 flav_RNR ribonucleot 99.8 1.9E-18 4.1E-23 125.4 13.4 106 4-136 2-111 (140)
28 PF12682 Flavodoxin_4: Flavodo 99.8 8.1E-19 1.8E-23 129.2 10.1 117 4-135 1-128 (156)
29 PRK07116 flavodoxin; Provision 99.8 1.7E-18 3.7E-23 128.4 10.7 121 1-135 2-131 (160)
30 PRK13556 azoreductase; Provisi 99.8 1.1E-17 2.4E-22 129.2 14.9 142 1-144 1-176 (208)
31 PRK11104 hemG protoporphyrinog 99.8 4.4E-18 9.5E-23 128.0 10.2 87 4-118 2-88 (177)
32 PRK06934 flavodoxin; Provision 99.8 4.1E-18 8.8E-23 131.1 9.6 120 3-135 36-184 (221)
33 PF12641 Flavodoxin_3: Flavodo 99.7 1.3E-17 2.8E-22 122.8 10.6 146 6-191 1-160 (160)
34 PRK09004 FMN-binding protein M 99.7 1E-16 2.2E-21 116.9 14.0 118 1-145 1-119 (146)
35 COG0716 FldA Flavodoxins [Ener 99.7 1.6E-16 3.4E-21 116.7 15.1 148 1-196 1-150 (151)
36 PRK13555 azoreductase; Provisi 99.7 4.6E-16 9.9E-21 119.7 15.7 139 1-141 1-173 (208)
37 PF02525 Flavodoxin_2: Flavodo 99.7 1.3E-16 2.9E-21 122.3 12.5 139 3-144 1-172 (199)
38 PF12724 Flavodoxin_5: Flavodo 99.7 9.8E-17 2.1E-21 116.8 9.5 87 6-120 1-87 (143)
39 PF00258 Flavodoxin_1: Flavodo 99.7 7.6E-16 1.7E-20 111.9 12.4 119 7-145 1-124 (143)
40 PRK08105 flavodoxin; Provision 99.7 3E-15 6.4E-20 109.6 14.6 120 1-145 1-121 (149)
41 PRK04930 glutathione-regulated 99.7 9.5E-16 2.1E-20 115.3 11.9 130 3-145 6-150 (184)
42 COG0431 Predicted flavoprotein 99.7 1.8E-15 3.8E-20 114.6 13.0 131 3-146 1-137 (184)
43 COG4635 HemG Flavodoxin [Energ 99.6 9E-16 2E-20 110.0 8.0 109 3-138 1-111 (175)
44 PRK00871 glutathione-regulated 99.6 5.3E-14 1.1E-18 105.2 13.0 128 5-145 2-142 (176)
45 COG2249 MdaB Putative NADPH-qu 99.6 1.6E-14 3.4E-19 109.3 8.4 113 3-120 1-125 (189)
46 PRK05723 flavodoxin; Provision 99.5 1.3E-12 2.8E-17 95.7 14.3 117 3-144 1-121 (151)
47 COG1182 AcpD Acyl carrier prot 99.5 1.5E-12 3.2E-17 97.7 13.1 140 1-141 1-170 (202)
48 PRK10953 cysJ sulfite reductas 99.4 6.3E-12 1.4E-16 110.6 14.8 120 2-144 61-181 (600)
49 TIGR01931 cysJ sulfite reducta 99.3 3E-11 6.5E-16 106.6 14.7 119 3-144 59-178 (597)
50 KOG4530 Predicted flavoprotein 99.3 9.3E-12 2E-16 89.2 8.1 132 3-143 11-150 (199)
51 PRK03600 nrdI ribonucleotide r 99.1 1.1E-09 2.3E-14 78.5 10.4 121 4-193 2-128 (134)
52 TIGR00333 nrdI ribonucleoside- 99.0 1.8E-08 3.8E-13 71.2 11.1 73 7-119 1-74 (125)
53 PRK02551 flavoprotein NrdI; Pr 98.6 1.9E-06 4.1E-11 63.0 11.7 139 3-196 2-152 (154)
54 KOG1159 NADP-dependent flavopr 98.5 1.9E-06 4.2E-11 72.6 10.4 119 3-143 1-121 (574)
55 PF07972 Flavodoxin_NdrI: NrdI 97.7 0.00016 3.4E-09 50.9 6.1 63 7-97 1-68 (122)
56 COG1780 NrdI Protein involved 97.6 0.0026 5.6E-08 45.1 11.6 126 5-197 3-133 (141)
57 PRK10310 PTS system galactitol 97.1 0.0016 3.4E-08 43.7 5.2 39 1-40 1-39 (94)
58 COG0369 CysJ Sulfite reductase 96.8 0.0034 7.5E-08 55.5 6.8 117 4-143 49-166 (587)
59 PRK10427 putative PTS system f 96.8 0.011 2.5E-07 41.0 7.9 64 1-81 1-67 (114)
60 PRK10499 PTS system N,N'-diace 96.2 0.17 3.8E-06 34.6 10.5 98 3-138 4-103 (106)
61 TIGR00853 pts-lac PTS system, 96.1 0.011 2.3E-07 39.8 4.2 37 2-40 3-39 (95)
62 COG1440 CelA Phosphotransferas 96.0 0.1 2.3E-06 35.1 8.6 80 3-116 2-81 (102)
63 PRK07053 glutamine amidotransf 95.8 0.079 1.7E-06 41.7 8.6 58 1-82 1-59 (234)
64 PF02302 PTS_IIB: PTS system, 95.7 0.043 9.3E-07 36.1 5.8 59 4-83 1-59 (90)
65 cd05565 PTS_IIB_lactose PTS_II 95.5 0.034 7.3E-07 37.7 4.6 79 4-116 2-80 (99)
66 COG1445 FrwB Phosphotransferas 95.4 0.11 2.4E-06 36.1 7.1 62 3-81 2-66 (122)
67 PRK09590 celB cellobiose phosp 95.3 0.038 8.3E-07 37.7 4.5 36 3-40 2-37 (104)
68 KOG1160 Fe-S oxidoreductase [E 95.1 0.33 7.2E-06 41.3 10.1 91 4-119 48-143 (601)
69 cd05566 PTS_IIB_galactitol PTS 94.4 0.15 3.2E-06 33.5 5.4 34 3-37 1-34 (89)
70 cd05564 PTS_IIB_chitobiose_lic 94.4 0.084 1.8E-06 35.5 4.2 79 4-116 1-79 (96)
71 COG3414 SgaB Phosphotransferas 93.5 0.36 7.9E-06 32.2 5.9 32 3-35 2-33 (93)
72 PRK13143 hisH imidazole glycer 93.1 0.7 1.5E-05 35.3 7.9 46 4-80 2-47 (200)
73 PRK06490 glutamine amidotransf 92.4 1.2 2.7E-05 35.0 8.6 56 2-81 7-63 (239)
74 PF06283 ThuA: Trehalose utili 92.3 1.5 3.2E-05 33.8 8.8 81 4-114 1-87 (217)
75 cd05567 PTS_IIB_mannitol PTS_I 91.8 0.67 1.5E-05 30.3 5.5 36 3-39 1-36 (87)
76 PRK08250 glutamine amidotransf 90.9 2.2 4.9E-05 33.5 8.6 55 4-82 2-57 (235)
77 cd05569 PTS_IIB_fructose PTS_I 90.7 2 4.3E-05 28.8 7.0 59 6-81 2-63 (96)
78 PRK11559 garR tartronate semia 90.7 6 0.00013 31.9 11.2 119 1-147 1-122 (296)
79 KOG3179 Predicted glutamine sy 90.4 5.3 0.00011 30.7 9.6 68 3-89 5-79 (245)
80 PRK01175 phosphoribosylformylg 90.0 4.4 9.4E-05 32.5 9.6 56 1-80 2-57 (261)
81 PRK05665 amidotransferase; Pro 89.9 7 0.00015 30.8 10.6 71 1-92 1-79 (240)
82 PRK09065 glutamine amidotransf 89.8 5.2 0.00011 31.4 9.8 75 2-97 1-84 (237)
83 PRK11574 oxidative-stress-resi 89.1 3.1 6.7E-05 31.4 7.9 102 1-117 1-108 (196)
84 cd00133 PTS_IIB PTS_IIB: subun 88.8 1.9 4.2E-05 27.1 5.7 31 4-35 1-31 (84)
85 PRK06895 putative anthranilate 88.6 4.3 9.3E-05 30.6 8.3 52 3-81 2-54 (190)
86 PRK09548 PTS system ascorbate- 88.3 1.1 2.5E-05 39.8 5.5 36 2-38 506-541 (602)
87 TIGR00829 FRU PTS system, fruc 88.3 3.5 7.5E-05 27.0 6.6 58 7-81 2-62 (85)
88 cd05563 PTS_IIB_ascorbate PTS_ 88.1 2.1 4.6E-05 27.6 5.6 31 4-35 1-31 (86)
89 PF03446 NAD_binding_2: NAD bi 88.1 5.4 0.00012 29.2 8.4 118 1-147 1-120 (163)
90 PRK11404 putative PTS system 87.6 2.8 6.2E-05 36.6 7.5 59 3-78 4-65 (482)
91 PRK01372 ddl D-alanine--D-alan 87.6 2.5 5.5E-05 34.2 6.9 41 1-42 3-46 (304)
92 cd05568 PTS_IIB_bgl_like PTS_I 86.8 1.4 3E-05 28.2 4.1 27 3-29 1-27 (85)
93 PRK05928 hemD uroporphyrinogen 86.2 1.8 4E-05 33.6 5.3 72 1-98 1-72 (249)
94 PRK10712 PTS system fructose-s 85.5 4.1 8.9E-05 36.3 7.5 62 3-81 104-168 (563)
95 COG1927 Mtd Coenzyme F420-depe 84.9 16 0.00035 28.3 12.1 95 1-116 1-95 (277)
96 PRK13146 hisH imidazole glycer 84.9 3 6.5E-05 32.1 5.7 49 1-79 1-49 (209)
97 PF00289 CPSase_L_chain: Carba 84.7 5.7 0.00012 27.3 6.5 105 1-145 1-105 (110)
98 PRK13170 hisH imidazole glycer 83.8 3.2 7E-05 31.5 5.5 43 4-77 2-44 (196)
99 CHL00188 hisH imidazole glycer 83.0 10 0.00022 29.2 8.0 48 1-80 1-48 (210)
100 COG0287 TyrA Prephenate dehydr 82.5 24 0.00053 28.5 10.9 71 18-98 13-85 (279)
101 PRK00994 F420-dependent methyl 82.4 21 0.00045 28.2 9.2 89 1-116 1-95 (277)
102 PRK11880 pyrroline-5-carboxyla 82.2 10 0.00022 30.1 8.0 78 1-97 1-82 (267)
103 PRK13608 diacylglycerol glucos 82.2 2.8 6.1E-05 35.3 5.0 39 2-42 5-47 (391)
104 COG2910 Putative NADH-flavin r 81.1 18 0.00039 27.6 8.2 85 3-97 1-88 (211)
105 PRK10017 colanic acid biosynth 80.9 34 0.00073 29.5 11.1 50 66-121 112-161 (426)
106 PF08357 SEFIR: SEFIR domain; 80.6 2.6 5.7E-05 30.3 3.8 68 3-82 1-70 (150)
107 PRK14571 D-alanyl-alanine synt 80.4 8.9 0.00019 31.0 7.2 38 4-42 2-42 (299)
108 cd01741 GATase1_1 Subgroup of 79.9 19 0.00042 26.8 8.5 52 4-80 1-55 (188)
109 PRK09765 PTS system 2-O-a-mann 79.3 9.9 0.00021 34.5 7.7 62 3-81 164-228 (631)
110 PRK08229 2-dehydropantoate 2-r 79.0 23 0.00049 29.1 9.3 74 1-83 1-85 (341)
111 COG0118 HisH Glutamine amidotr 78.0 7.4 0.00016 29.8 5.5 81 1-116 1-82 (204)
112 cd03147 GATase1_Ydr533c_like T 77.8 26 0.00057 27.4 8.8 41 68-115 91-134 (231)
113 PRK14194 bifunctional 5,10-met 77.7 38 0.00082 27.8 12.0 40 3-43 34-73 (301)
114 PRK15461 NADH-dependent gamma- 77.3 37 0.0008 27.5 12.7 118 4-147 3-121 (296)
115 PRK08727 hypothetical protein; 76.5 34 0.00074 26.6 10.5 76 5-97 43-119 (233)
116 PRK10125 putative glycosyl tra 75.8 10 0.00022 32.3 6.5 38 4-42 2-40 (405)
117 PRK13055 putative lipid kinase 75.6 6.1 0.00013 32.7 5.0 40 1-41 1-42 (334)
118 COG1587 HemD Uroporphyrinogen- 75.5 15 0.00032 29.0 6.9 58 21-98 136-195 (248)
119 cd01080 NAD_bind_m-THF_DH_Cycl 74.7 9.1 0.0002 28.4 5.2 53 4-82 46-98 (168)
120 PF00763 THF_DHG_CYH: Tetrahyd 74.2 22 0.00048 24.6 6.8 67 3-84 30-100 (117)
121 PF13192 Thioredoxin_3: Thiore 74.1 13 0.00028 23.3 5.2 37 4-42 2-38 (76)
122 PRK14179 bifunctional 5,10-met 73.9 47 0.001 27.0 11.0 41 3-44 33-73 (284)
123 cd03142 GATase1_ThuA Type 1 gl 73.9 19 0.0004 28.0 6.9 61 19-98 24-86 (215)
124 PF01866 Diphthamide_syn: Puta 73.3 14 0.00031 30.2 6.5 58 3-79 210-268 (307)
125 TIGR01692 HIBADH 3-hydroxyisob 73.2 47 0.001 26.7 9.9 107 19-147 7-116 (288)
126 cd03825 GT1_wcfI_like This fam 73.2 7.2 0.00016 31.6 4.8 38 4-42 2-40 (365)
127 PRK00861 putative lipid kinase 73.1 10 0.00022 30.8 5.6 40 1-42 1-42 (300)
128 PRK05282 (alpha)-aspartyl dipe 73.1 11 0.00024 29.7 5.5 14 66-79 74-87 (233)
129 PF13380 CoA_binding_2: CoA bi 72.9 22 0.00048 24.5 6.5 108 3-146 1-109 (116)
130 COG2984 ABC-type uncharacteriz 72.4 9.9 0.00021 31.3 5.2 39 3-42 160-198 (322)
131 PRK00094 gpsA NAD(P)H-dependen 72.2 30 0.00065 28.1 8.2 83 1-98 1-92 (325)
132 cd04962 GT1_like_5 This family 72.2 4.9 0.00011 32.9 3.6 37 4-41 2-38 (371)
133 PRK11780 isoprenoid biosynthes 72.1 41 0.0009 26.1 8.5 39 3-42 2-43 (217)
134 PLN02832 glutamine amidotransf 70.8 32 0.00069 27.3 7.7 46 1-79 1-46 (248)
135 COG2085 Predicted dinucleotide 70.2 49 0.0011 25.7 8.3 83 1-96 1-83 (211)
136 PRK14619 NAD(P)H-dependent gly 69.8 59 0.0013 26.4 11.0 63 3-97 5-67 (308)
137 PRK13059 putative lipid kinase 69.8 12 0.00025 30.4 5.2 40 1-42 1-42 (295)
138 COG0386 BtuE Glutathione perox 69.7 34 0.00074 25.1 6.9 43 105-147 22-65 (162)
139 TIGR01737 FGAM_synth_I phospho 69.6 38 0.00083 26.3 7.9 48 4-80 2-49 (227)
140 COG2210 Peroxiredoxin family p 69.4 16 0.00034 26.2 5.1 39 1-40 1-39 (137)
141 PRK09212 pyruvate dehydrogenas 69.2 23 0.00049 29.3 6.9 70 13-97 209-279 (327)
142 cd03148 GATase1_EcHsp31_like T 69.2 38 0.00082 26.6 7.8 30 68-97 93-125 (232)
143 PRK15005 universal stress prot 68.7 11 0.00024 26.3 4.5 41 1-42 1-42 (144)
144 PF01695 IstB_IS21: IstB-like 68.4 7.8 0.00017 29.0 3.7 67 5-79 49-116 (178)
145 PRK05395 3-dehydroquinate dehy 68.2 19 0.00041 26.1 5.4 78 3-97 2-92 (146)
146 cd01748 GATase1_IGP_Synthase T 68.0 33 0.00072 25.8 7.2 45 5-80 1-45 (198)
147 COG3360 Uncharacterized conser 67.5 11 0.00024 23.4 3.5 27 3-29 7-33 (71)
148 PF10087 DUF2325: Uncharacteri 67.3 33 0.00071 22.7 6.2 40 65-114 42-81 (97)
149 PRK14184 bifunctional 5,10-met 67.2 67 0.0015 26.1 9.1 40 3-43 32-71 (286)
150 PRK13527 glutamine amidotransf 66.4 21 0.00046 27.0 5.8 50 4-79 2-51 (200)
151 PRK14187 bifunctional 5,10-met 66.2 72 0.0016 26.1 11.3 40 3-43 33-72 (294)
152 COG1597 LCB5 Sphingosine kinas 66.0 25 0.00053 28.7 6.4 41 1-42 1-43 (301)
153 PF09314 DUF1972: Domain of un 65.8 56 0.0012 24.7 12.9 73 2-94 1-77 (185)
154 PF00117 GATase: Glutamine ami 65.6 26 0.00057 26.0 6.2 61 13-97 7-68 (192)
155 PRK00961 H(2)-dependent methyl 65.5 74 0.0016 26.0 9.2 32 65-97 135-166 (342)
156 PF02780 Transketolase_C: Tran 65.2 11 0.00025 26.0 3.8 38 4-45 11-48 (124)
157 TIGR00322 diphth2_R diphthamid 64.8 26 0.00056 29.1 6.3 40 3-43 233-273 (332)
158 CHL00144 odpB pyruvate dehydro 64.5 27 0.00059 28.9 6.5 69 13-96 209-278 (327)
159 PRK01231 ppnK inorganic polyph 64.1 17 0.00036 29.7 5.0 37 2-39 4-40 (295)
160 cd03805 GT1_ALG2_like This fam 64.0 13 0.00028 30.8 4.6 37 3-40 1-38 (392)
161 cd01452 VWA_26S_proteasome_sub 63.8 19 0.0004 27.3 4.9 38 4-42 109-146 (187)
162 cd03802 GT1_AviGT4_like This f 63.6 17 0.00036 29.1 5.1 38 4-42 2-46 (335)
163 PRK11538 ribosome-associated p 63.5 32 0.00069 23.4 5.6 53 16-97 3-55 (105)
164 PF04392 ABC_sub_bind: ABC tra 63.5 9.7 0.00021 30.7 3.6 39 3-42 132-170 (294)
165 PRK10834 vancomycin high tempe 63.0 36 0.00078 26.9 6.5 62 74-140 48-111 (239)
166 PRK14169 bifunctional 5,10-met 62.8 46 0.001 27.0 7.3 41 3-44 31-71 (282)
167 PLN02617 imidazole glycerol ph 62.6 51 0.0011 29.4 8.1 46 3-79 7-52 (538)
168 PRK13609 diacylglycerol glucos 62.5 15 0.00032 30.6 4.7 39 3-42 5-44 (380)
169 PRK14188 bifunctional 5,10-met 62.5 45 0.00098 27.3 7.2 41 3-44 33-73 (296)
170 PRK14167 bifunctional 5,10-met 62.4 41 0.00089 27.5 6.9 42 3-45 32-73 (297)
171 COG2044 Predicted peroxiredoxi 62.4 27 0.00058 24.5 5.1 41 1-42 1-43 (120)
172 PRK08818 prephenate dehydrogen 62.1 19 0.00041 30.4 5.1 68 3-98 5-72 (370)
173 PRK05637 anthranilate synthase 61.9 71 0.0015 24.5 8.9 32 3-40 2-33 (208)
174 PRK13141 hisH imidazole glycer 61.8 53 0.0011 24.9 7.3 45 5-80 2-46 (205)
175 PRK00726 murG undecaprenyldiph 61.7 13 0.00028 30.6 4.2 38 1-41 1-38 (357)
176 PLN02683 pyruvate dehydrogenas 61.6 44 0.00096 28.0 7.3 74 5-96 231-305 (356)
177 PRK14186 bifunctional 5,10-met 61.4 47 0.001 27.2 7.1 40 3-43 33-72 (297)
178 PRK05479 ketol-acid reductoiso 61.2 96 0.0021 25.8 9.4 56 18-81 27-83 (330)
179 cd05212 NAD_bind_m-THF_DH_Cycl 61.0 23 0.00049 25.5 4.8 48 14-82 35-82 (140)
180 PF02153 PDH: Prephenate dehyd 60.7 83 0.0018 24.9 8.8 62 66-144 40-101 (258)
181 PRK13054 lipid kinase; Reviewe 60.7 18 0.00038 29.4 4.7 38 1-40 2-39 (300)
182 PRK13525 glutamine amidotransf 60.4 27 0.00059 26.3 5.4 47 1-80 1-47 (189)
183 PF01210 NAD_Gly3P_dh_N: NAD-d 60.2 8.6 0.00019 28.0 2.5 42 66-118 64-105 (157)
184 PRK06444 prephenate dehydrogen 60.1 16 0.00035 27.9 4.1 27 4-36 2-28 (197)
185 COG1587 HemD Uroporphyrinogen- 59.8 30 0.00064 27.2 5.7 76 18-115 11-86 (248)
186 PRK14189 bifunctional 5,10-met 59.4 96 0.0021 25.2 8.7 41 3-44 33-73 (285)
187 PRK12377 putative replication 59.4 87 0.0019 24.8 8.2 68 5-79 103-171 (248)
188 PRK13566 anthranilate synthase 59.2 61 0.0013 30.1 8.2 34 3-42 527-560 (720)
189 COG2454 Uncharacterized conser 59.1 23 0.0005 27.1 4.6 70 4-90 130-199 (211)
190 PRK04155 chaperone protein Hch 59.1 82 0.0018 25.6 8.2 39 3-42 50-100 (287)
191 PF13344 Hydrolase_6: Haloacid 59.0 8.6 0.00019 25.8 2.2 57 70-143 3-59 (101)
192 COG0394 Wzb Protein-tyrosine-p 58.9 14 0.0003 26.5 3.4 26 1-29 1-28 (139)
193 TIGR00412 redox_disulf_2 small 58.9 34 0.00074 21.4 4.9 34 8-42 5-38 (76)
194 PRK12491 pyrroline-5-carboxyla 58.8 93 0.002 24.9 8.6 78 1-97 1-83 (272)
195 PTZ00182 3-methyl-2-oxobutanat 58.7 50 0.0011 27.7 7.1 69 13-96 241-310 (355)
196 PRK08939 primosomal protein Dn 58.6 14 0.00029 30.4 3.6 66 5-78 158-224 (306)
197 COG1484 DnaC DNA replication p 58.5 11 0.00024 30.0 3.1 67 5-79 107-175 (254)
198 PRK10792 bifunctional 5,10-met 58.4 57 0.0012 26.5 7.1 40 3-43 34-73 (285)
199 PRK11914 diacylglycerol kinase 58.3 23 0.0005 28.8 5.0 37 3-40 9-47 (306)
200 COG1810 Uncharacterized protei 58.2 18 0.00038 28.2 3.9 13 1-14 1-13 (224)
201 PRK14180 bifunctional 5,10-met 58.2 58 0.0012 26.5 7.1 41 3-44 32-72 (282)
202 PRK05788 cobalamin biosynthesi 57.9 14 0.00031 30.4 3.7 58 3-81 4-61 (315)
203 TIGR02717 AcCoA-syn-alpha acet 57.9 1.3E+02 0.0027 26.1 11.7 118 3-146 8-128 (447)
204 cd01750 GATase1_CobQ Type 1 gl 57.8 44 0.00095 25.2 6.1 46 6-81 2-47 (194)
205 PRK06893 DNA replication initi 57.5 52 0.0011 25.5 6.7 36 5-42 41-77 (229)
206 COG3019 Predicted metal-bindin 57.2 53 0.0012 23.7 5.9 67 5-89 27-94 (149)
207 cd03030 GRX_SH3BGR Glutaredoxi 56.9 41 0.00088 22.3 5.1 36 6-42 3-40 (92)
208 PRK14190 bifunctional 5,10-met 56.9 61 0.0013 26.4 7.0 40 3-43 33-72 (284)
209 PRK03619 phosphoribosylformylg 56.7 90 0.002 24.1 8.1 47 4-79 2-49 (219)
210 PRK01966 ddl D-alanyl-alanine 56.6 30 0.00065 28.5 5.5 40 2-42 3-45 (333)
211 PRK11199 tyrA bifunctional cho 56.3 19 0.00042 30.3 4.3 55 3-82 99-153 (374)
212 cd03146 GAT1_Peptidase_E Type 56.3 41 0.00089 25.8 5.8 25 65-93 74-98 (212)
213 PRK14176 bifunctional 5,10-met 56.3 63 0.0014 26.3 7.0 40 3-43 39-78 (287)
214 PRK14177 bifunctional 5,10-met 56.2 1.1E+02 0.0024 24.9 12.4 40 3-43 34-73 (284)
215 PRK14174 bifunctional 5,10-met 56.1 50 0.0011 27.0 6.4 41 3-44 32-72 (295)
216 PRK05752 uroporphyrinogen-III 56.0 30 0.00066 27.2 5.2 25 67-98 51-75 (255)
217 PRK07765 para-aminobenzoate sy 56.0 34 0.00074 26.4 5.3 54 4-80 2-56 (214)
218 TIGR01855 IMP_synth_hisH imida 55.8 63 0.0014 24.4 6.7 44 6-80 2-45 (196)
219 COG0693 ThiJ Putative intracel 55.1 67 0.0014 23.8 6.7 102 1-117 1-108 (188)
220 PRK14166 bifunctional 5,10-met 55.1 1.1E+02 0.0025 24.8 8.4 40 3-43 31-70 (282)
221 PRK14175 bifunctional 5,10-met 55.1 69 0.0015 26.1 7.1 41 3-44 33-73 (286)
222 COG4551 Predicted protein tyro 55.0 8.2 0.00018 25.7 1.4 44 60-116 40-83 (109)
223 PRK14168 bifunctional 5,10-met 54.8 67 0.0015 26.3 7.0 42 3-45 34-75 (297)
224 PRK10712 PTS system fructose-s 54.7 28 0.0006 31.2 5.1 32 4-36 2-35 (563)
225 cd03820 GT1_amsD_like This fam 54.5 29 0.00063 27.3 5.0 39 4-43 1-41 (348)
226 PF01113 DapB_N: Dihydrodipico 54.2 71 0.0015 22.1 7.3 40 66-119 62-101 (124)
227 PRK06928 pyrroline-5-carboxyla 54.1 1.1E+02 0.0024 24.4 9.5 26 67-98 60-85 (277)
228 COG0240 GpsA Glycerol-3-phosph 54.1 1.3E+02 0.0028 25.1 10.8 43 66-119 66-108 (329)
229 PRK02645 ppnK inorganic polyph 53.8 29 0.00063 28.4 4.8 37 3-40 4-40 (305)
230 PRK14193 bifunctional 5,10-met 53.7 58 0.0013 26.5 6.4 42 3-45 33-74 (284)
231 PF13439 Glyco_transf_4: Glyco 53.4 27 0.00058 24.7 4.2 29 13-42 11-39 (177)
232 TIGR01133 murG undecaprenyldip 53.3 22 0.00049 28.8 4.2 34 4-39 2-35 (348)
233 PRK14172 bifunctional 5,10-met 52.8 73 0.0016 25.8 6.8 41 3-44 33-73 (278)
234 COG1736 DPH2 Diphthamide synth 52.8 59 0.0013 27.3 6.4 40 3-43 238-278 (347)
235 TIGR03682 arCOG04112 arCOG0411 52.8 59 0.0013 26.7 6.5 40 3-43 213-253 (308)
236 PF03575 Peptidase_S51: Peptid 52.8 12 0.00026 27.1 2.3 41 20-78 2-42 (154)
237 TIGR00465 ilvC ketol-acid redu 52.7 1.3E+02 0.0028 24.8 9.4 65 4-82 5-70 (314)
238 cd01743 GATase1_Anthranilate_S 52.5 93 0.002 23.0 7.2 37 24-80 15-52 (184)
239 PRK12490 6-phosphogluconate de 52.5 1.2E+02 0.0027 24.4 12.5 116 4-148 2-121 (299)
240 PRK14170 bifunctional 5,10-met 52.2 82 0.0018 25.6 7.1 41 3-44 32-72 (284)
241 cd03812 GT1_CapH_like This fam 52.2 99 0.0021 24.8 7.9 38 4-42 1-39 (358)
242 PRK05339 PEP synthetase regula 52.2 51 0.0011 26.6 5.8 39 1-42 1-41 (269)
243 PRK14182 bifunctional 5,10-met 52.1 64 0.0014 26.2 6.4 40 3-43 31-70 (282)
244 PF09651 Cas_APE2256: CRISPR-a 52.1 35 0.00075 24.3 4.5 37 5-42 24-60 (136)
245 cd03129 GAT1_Peptidase_E_like 51.9 96 0.0021 23.6 7.3 58 16-94 42-99 (210)
246 PRK13526 glutamine amidotransf 51.8 47 0.001 25.0 5.3 14 66-79 34-47 (179)
247 cd04951 GT1_WbdM_like This fam 51.6 31 0.00068 27.8 4.8 38 4-42 1-39 (360)
248 COG3828 Uncharacterized protei 51.4 9.1 0.0002 29.2 1.4 37 1-38 2-39 (239)
249 PLN02605 monogalactosyldiacylg 51.1 27 0.00059 29.2 4.4 37 5-42 1-40 (382)
250 PRK14181 bifunctional 5,10-met 51.0 79 0.0017 25.8 6.8 42 3-45 27-68 (287)
251 PLN02516 methylenetetrahydrofo 50.8 68 0.0015 26.3 6.4 40 3-43 40-79 (299)
252 PRK02261 methylaspartate mutas 50.7 89 0.0019 22.2 10.3 76 4-98 3-79 (137)
253 PRK14171 bifunctional 5,10-met 50.7 1.4E+02 0.003 24.4 8.5 41 3-44 33-73 (288)
254 PRK14191 bifunctional 5,10-met 49.9 90 0.002 25.4 7.0 40 3-43 32-71 (285)
255 PLN02897 tetrahydrofolate dehy 49.8 91 0.002 26.1 7.1 41 3-44 87-127 (345)
256 PF04908 SH3BGR: SH3-binding, 49.5 59 0.0013 21.9 5.0 38 4-42 2-41 (99)
257 PRK11892 pyruvate dehydrogenas 49.4 72 0.0016 27.9 6.7 69 13-96 348-417 (464)
258 PRK07417 arogenate dehydrogena 48.8 1.4E+02 0.003 23.9 8.8 77 4-98 2-78 (279)
259 PRK03372 ppnK inorganic polyph 48.7 45 0.00097 27.4 5.1 37 2-39 5-41 (306)
260 TIGR01505 tartro_sem_red 2-hyd 48.5 1.4E+02 0.003 23.9 9.8 110 19-147 10-119 (291)
261 PRK14569 D-alanyl-alanine synt 48.5 1.3E+02 0.0028 24.3 7.9 38 3-41 4-44 (296)
262 PRK14185 bifunctional 5,10-met 48.4 72 0.0016 26.1 6.2 41 3-44 32-72 (293)
263 PF02882 THF_DHG_CYH_C: Tetrah 48.4 33 0.00071 25.3 3.9 54 4-83 38-91 (160)
264 PRK05642 DNA replication initi 47.5 35 0.00077 26.6 4.3 37 4-42 46-83 (234)
265 PRK14183 bifunctional 5,10-met 47.4 1.4E+02 0.003 24.3 7.7 42 3-45 32-73 (281)
266 CHL00197 carA carbamoyl-phosph 47.4 46 0.00099 28.3 5.1 29 4-40 194-222 (382)
267 TIGR00272 DPH2 diphthamide bio 47.2 50 0.0011 29.1 5.5 42 3-45 282-324 (496)
268 PF01993 MTD: methylene-5,6,7, 47.0 52 0.0011 26.1 4.9 80 16-117 14-95 (276)
269 PF02410 Oligomerisation: Olig 47.0 60 0.0013 21.7 4.8 42 19-85 1-42 (100)
270 PF01380 SIS: SIS domain SIS d 47.0 46 0.001 22.7 4.5 35 3-39 53-87 (131)
271 COG0078 ArgF Ornithine carbamo 46.9 1.6E+02 0.0036 24.2 8.1 54 105-191 150-203 (310)
272 cd01740 GATase1_FGAR_AT Type 1 46.9 71 0.0015 25.0 5.9 40 23-82 15-55 (238)
273 PF02662 FlpD: Methyl-viologen 46.8 98 0.0021 21.6 7.3 12 70-81 51-63 (124)
274 COG0518 GuaA GMP synthase - Gl 46.8 1.3E+02 0.0028 23.0 8.9 31 3-39 2-33 (198)
275 PF00885 DMRL_synthase: 6,7-di 46.6 32 0.0007 24.8 3.6 70 4-87 5-78 (144)
276 PRK13626 transcriptional regul 46.2 83 0.0018 28.0 6.8 36 5-41 405-440 (552)
277 PRK09189 uroporphyrinogen-III 46.1 44 0.00095 26.0 4.7 21 71-98 170-190 (240)
278 PRK10307 putative glycosyl tra 45.9 36 0.00078 28.6 4.4 38 3-41 1-41 (412)
279 PRK14173 bifunctional 5,10-met 45.9 1.5E+02 0.0032 24.2 7.6 41 3-44 30-70 (287)
280 TIGR00872 gnd_rel 6-phosphoglu 45.7 1.6E+02 0.0035 23.8 10.9 118 4-148 2-120 (298)
281 cd03795 GT1_like_4 This family 45.5 40 0.00087 27.1 4.5 38 4-42 1-41 (357)
282 cd06578 HemD Uroporphyrinogen- 45.4 69 0.0015 24.3 5.6 60 20-98 10-69 (239)
283 PRK03708 ppnK inorganic polyph 45.4 49 0.0011 26.7 4.9 35 4-39 2-36 (277)
284 cd03132 GATase1_catalase Type 45.4 1E+02 0.0023 21.5 7.9 97 3-116 2-103 (142)
285 PRK07952 DNA replication prote 44.9 1.5E+02 0.0033 23.4 7.8 71 5-82 101-173 (244)
286 PF01220 DHquinase_II: Dehydro 44.9 1.1E+02 0.0024 22.1 6.0 77 3-97 1-91 (140)
287 TIGR01823 PabB-fungal aminodeo 44.3 2.3E+02 0.0051 26.5 9.5 54 4-78 7-60 (742)
288 PLN02234 1-deoxy-D-xylulose-5- 44.3 1.7E+02 0.0037 26.9 8.4 69 13-97 552-621 (641)
289 PRK14178 bifunctional 5,10-met 44.2 1.7E+02 0.0037 23.7 11.8 42 3-45 27-68 (279)
290 cd04955 GT1_like_6 This family 43.7 35 0.00077 27.5 4.0 38 4-42 1-42 (363)
291 COG3340 PepE Peptidase E [Amin 43.7 85 0.0018 24.5 5.6 14 66-79 79-92 (224)
292 TIGR02069 cyanophycinase cyano 43.6 84 0.0018 24.9 5.9 60 4-79 30-90 (250)
293 PRK09599 6-phosphogluconate de 43.5 1.7E+02 0.0038 23.6 12.2 120 4-148 2-121 (301)
294 TIGR00147 lipid kinase, YegS/R 43.4 61 0.0013 26.0 5.2 38 3-41 2-41 (293)
295 PF01820 Dala_Dala_lig_N: D-al 43.4 98 0.0021 21.3 5.6 39 3-42 1-42 (117)
296 PRK14175 bifunctional 5,10-met 43.1 52 0.0011 26.8 4.7 52 4-81 160-211 (286)
297 PRK11200 grxA glutaredoxin 1; 43.0 84 0.0018 19.8 4.9 39 4-42 2-40 (85)
298 PF12076 Wax2_C: WAX2 C-termin 42.9 28 0.0006 25.7 2.7 26 13-39 4-29 (164)
299 PF11965 DUF3479: Domain of un 42.9 41 0.00088 25.0 3.7 66 4-85 2-70 (164)
300 PRK06835 DNA replication prote 42.8 2E+02 0.0042 23.9 8.8 70 4-79 184-254 (329)
301 PRK13337 putative lipid kinase 42.5 60 0.0013 26.3 5.1 39 3-42 2-42 (304)
302 TIGR01815 TrpE-clade3 anthrani 42.2 1.4E+02 0.003 27.8 7.7 33 3-41 517-549 (717)
303 PRK00074 guaA GMP synthase; Re 42.0 85 0.0018 27.8 6.2 34 1-40 2-35 (511)
304 PRK14568 vanB D-alanine--D-lac 42.0 70 0.0015 26.5 5.5 40 2-42 3-45 (343)
305 PRK08181 transposase; Validate 41.9 1.2E+02 0.0026 24.4 6.6 68 5-80 108-176 (269)
306 PRK08997 isocitrate dehydrogen 41.8 1.4E+02 0.0031 24.9 7.1 73 1-83 1-76 (334)
307 PF07881 Fucose_iso_N1: L-fuco 41.7 75 0.0016 23.7 4.8 111 3-140 4-130 (171)
308 PRK00207 sulfur transfer compl 41.5 72 0.0016 22.4 4.7 38 4-42 2-42 (128)
309 cd00995 PBP2_NikA_DppA_OppA_li 41.3 1E+02 0.0022 26.1 6.6 36 5-41 325-360 (466)
310 PRK14325 (dimethylallyl)adenos 41.2 1.1E+02 0.0023 26.5 6.6 25 70-94 39-63 (444)
311 TIGR03521 GldG gliding-associa 40.9 1.1E+02 0.0023 27.4 6.7 21 65-85 228-248 (552)
312 cd04124 RabL2 RabL2 subfamily. 40.9 1.3E+02 0.0028 21.3 7.6 46 66-116 67-112 (161)
313 PF01861 DUF43: Protein of unk 40.3 1.9E+02 0.0041 23.0 9.1 65 69-143 110-174 (243)
314 cd06354 PBP1_BmpA_PnrA_like Pe 40.2 1.3E+02 0.0028 23.4 6.6 37 4-41 1-41 (265)
315 PRK02649 ppnK inorganic polyph 40.0 68 0.0015 26.3 4.9 36 3-39 2-37 (305)
316 COG1435 Tdk Thymidine kinase [ 39.9 84 0.0018 24.1 5.0 37 2-40 3-40 (201)
317 PRK14192 bifunctional 5,10-met 39.5 84 0.0018 25.5 5.4 52 3-80 160-211 (283)
318 PLN02616 tetrahydrofolate dehy 39.5 1.6E+02 0.0036 24.9 7.1 41 3-44 104-144 (364)
319 cd06312 PBP1_ABC_sugar_binding 39.4 1.5E+02 0.0033 22.9 6.8 38 4-42 1-40 (271)
320 TIGR01019 sucCoAalpha succinyl 39.1 2.1E+02 0.0046 23.2 11.3 106 13-147 12-122 (286)
321 PF06554 Olfactory_mark: Olfac 38.8 33 0.00071 24.4 2.5 17 182-198 107-123 (151)
322 PF11382 DUF3186: Protein of u 38.5 1.2E+02 0.0026 24.9 6.2 50 91-144 66-115 (308)
323 COG0512 PabA Anthranilate/para 38.3 1.8E+02 0.0039 22.2 7.2 67 4-95 3-73 (191)
324 KOG1158 NADP/FAD dependent oxi 38.3 89 0.0019 28.6 5.7 71 4-98 48-120 (645)
325 PRK13181 hisH imidazole glycer 38.2 1E+02 0.0022 23.3 5.4 45 5-80 2-46 (199)
326 PF09960 DUF2194: Uncharacteri 38.2 1.6E+02 0.0034 26.7 7.3 73 4-95 55-127 (585)
327 PF03807 F420_oxidored: NADP o 37.9 64 0.0014 20.7 3.8 77 4-97 1-81 (96)
328 PLN02225 1-deoxy-D-xylulose-5- 37.8 1.4E+02 0.003 27.7 6.9 69 13-96 575-643 (701)
329 PRK09273 hypothetical protein; 37.6 52 0.0011 25.5 3.6 37 3-42 1-38 (211)
330 PF00781 DAGK_cat: Diacylglyce 37.6 1.4E+02 0.003 20.6 6.2 36 4-42 1-38 (130)
331 cd06259 YdcF-like YdcF-like. Y 37.6 1.5E+02 0.0032 20.9 6.3 62 74-139 3-64 (150)
332 PRK08811 uroporphyrinogen-III 37.5 54 0.0012 26.2 4.0 58 18-95 28-86 (266)
333 PRK15456 universal stress prot 37.4 83 0.0018 21.9 4.6 40 1-42 1-41 (142)
334 cd03823 GT1_ExpE7_like This fa 37.2 61 0.0013 25.7 4.4 38 4-42 1-42 (359)
335 PRK12361 hypothetical protein; 37.2 87 0.0019 27.9 5.6 39 1-41 241-281 (547)
336 PRK07119 2-ketoisovalerate fer 36.9 79 0.0017 26.5 5.0 37 5-45 249-285 (352)
337 COG3412 Uncharacterized protei 36.9 61 0.0013 22.9 3.6 36 1-42 1-36 (129)
338 KOG2884 26S proteasome regulat 36.8 91 0.002 24.4 4.8 39 3-42 108-146 (259)
339 cd05017 SIS_PGI_PMI_1 The memb 36.7 72 0.0016 21.7 4.1 32 4-37 44-75 (119)
340 PRK15083 PTS system mannitol-s 36.7 79 0.0017 28.8 5.3 37 3-40 379-416 (639)
341 TIGR00888 guaA_Nterm GMP synth 36.6 1.7E+02 0.0037 21.7 6.4 25 12-41 7-31 (188)
342 cd03807 GT1_WbnK_like This fam 36.1 2.1E+02 0.0046 22.4 7.9 38 4-42 1-39 (365)
343 cd08490 PBP2_NikA_DppA_OppA_li 36.0 1.6E+02 0.0035 25.1 7.0 36 5-41 323-358 (470)
344 PRK14191 bifunctional 5,10-met 36.0 76 0.0016 25.8 4.6 52 4-81 159-210 (285)
345 PRK03995 hypothetical protein; 35.9 1.5E+02 0.0032 23.9 6.1 24 4-27 2-25 (267)
346 cd03811 GT1_WabH_like This fam 35.9 64 0.0014 25.3 4.3 38 4-42 1-39 (353)
347 TIGR00514 accC acetyl-CoA carb 35.9 2.8E+02 0.0062 23.8 10.2 33 1-40 1-33 (449)
348 PRK08367 porA pyruvate ferredo 35.8 2.8E+02 0.0061 23.7 8.3 67 5-91 265-332 (394)
349 cd03134 GATase1_PfpI_like A ty 35.7 1.6E+02 0.0036 21.0 8.1 96 4-116 1-102 (165)
350 COG0473 LeuB Isocitrate/isopro 35.6 1.2E+02 0.0027 25.3 5.7 21 61-81 55-75 (348)
351 PRK10126 tyrosine phosphatase; 35.5 55 0.0012 23.5 3.4 25 1-28 1-27 (147)
352 cd03808 GT1_cap1E_like This fa 35.4 81 0.0017 24.8 4.8 37 4-42 1-37 (359)
353 PF02635 DrsE: DsrE/DsrF-like 35.3 83 0.0018 20.9 4.2 39 3-42 1-44 (122)
354 COG5012 Predicted cobalamin bi 35.1 2.1E+02 0.0046 22.4 6.6 83 6-111 106-189 (227)
355 KOG2728 Uncharacterized conser 35.1 56 0.0012 26.1 3.5 34 80-119 8-41 (302)
356 PRK08084 DNA replication initi 34.9 57 0.0012 25.4 3.7 36 5-42 47-83 (235)
357 PRK07168 bifunctional uroporph 34.6 79 0.0017 27.7 4.8 62 17-99 260-321 (474)
358 COG0296 GlgB 1,4-alpha-glucan 34.2 1.1E+02 0.0024 27.9 5.7 62 15-98 162-224 (628)
359 PRK04539 ppnK inorganic polyph 34.1 91 0.002 25.5 4.8 36 3-39 6-41 (296)
360 PRK08655 prephenate dehydrogen 34.0 90 0.0019 27.0 5.0 78 4-98 2-79 (437)
361 COG0002 ArgC Acetylglutamate s 33.9 96 0.0021 26.0 4.9 36 1-41 1-36 (349)
362 cd06388 PBP1_iGluR_AMPA_GluR4 33.9 1.7E+02 0.0037 24.5 6.6 36 3-41 125-160 (371)
363 cd03130 GATase1_CobB Type 1 gl 33.8 1.9E+02 0.0042 21.8 6.3 11 69-79 38-48 (198)
364 PRK08591 acetyl-CoA carboxylas 33.7 1E+02 0.0022 26.4 5.4 34 1-41 1-34 (451)
365 PF00582 Usp: Universal stress 33.7 94 0.002 20.6 4.4 41 1-43 1-41 (140)
366 PRK13015 3-dehydroquinate dehy 33.4 1.9E+02 0.0041 21.0 6.1 78 3-97 2-92 (146)
367 cd04153 Arl5_Arl8 Arl5/Arl8 su 33.4 1.8E+02 0.0039 21.0 6.0 48 67-117 78-125 (174)
368 PLN02347 GMP synthetase 33.3 3.6E+02 0.0077 24.2 8.9 31 4-40 12-42 (536)
369 PRK06761 hypothetical protein; 33.3 1.1E+02 0.0023 24.9 5.0 37 1-39 1-38 (282)
370 PRK06975 bifunctional uroporph 33.3 1.1E+02 0.0025 28.0 5.7 27 66-99 50-76 (656)
371 cd04795 SIS SIS domain. SIS (S 33.0 85 0.0018 19.5 3.7 31 4-36 48-78 (87)
372 cd03821 GT1_Bme6_like This fam 32.9 61 0.0013 25.8 3.7 38 4-42 1-41 (375)
373 cd00316 Oxidoreductase_nitroge 32.6 3E+02 0.0064 23.0 9.4 71 70-144 110-184 (399)
374 smart00177 ARF ARF-like small 32.5 1.9E+02 0.0042 20.9 6.9 45 69-116 78-122 (175)
375 PHA03075 glutaredoxin-like pro 32.5 99 0.0021 21.6 4.0 34 2-40 1-35 (123)
376 PRK11391 etp phosphotyrosine-p 32.5 65 0.0014 23.1 3.4 25 1-28 1-27 (144)
377 cd00578 L-fuc_L-ara-isomerases 32.5 3.3E+02 0.0071 23.5 13.3 88 4-118 2-98 (452)
378 PF05368 NmrA: NmrA-like famil 32.2 60 0.0013 24.8 3.4 48 65-119 58-105 (233)
379 cd03792 GT1_Trehalose_phosphor 32.0 87 0.0019 25.8 4.6 38 4-42 1-39 (372)
380 PRK06217 hypothetical protein; 31.9 57 0.0012 24.1 3.1 26 1-28 1-26 (183)
381 PRK07206 hypothetical protein; 31.8 63 0.0014 27.3 3.7 34 1-41 1-34 (416)
382 PRK06522 2-dehydropantoate 2-r 31.6 2.7E+02 0.0057 22.2 10.1 81 4-98 2-87 (304)
383 PRK00436 argC N-acetyl-gamma-g 31.5 1.9E+02 0.0041 24.0 6.4 15 68-82 65-79 (343)
384 PLN02958 diacylglycerol kinase 31.2 1.9E+02 0.0042 25.4 6.6 38 3-41 112-152 (481)
385 cd05009 SIS_GlmS_GlmD_2 SIS (S 31.0 1.1E+02 0.0024 21.5 4.4 35 4-39 62-96 (153)
386 PF00496 SBP_bac_5: Bacterial 31.0 1.2E+02 0.0025 24.9 5.2 72 5-94 296-367 (374)
387 PRK08118 topology modulation p 30.7 67 0.0014 23.6 3.3 26 3-29 2-27 (167)
388 PRK01911 ppnK inorganic polyph 30.7 1E+02 0.0023 25.1 4.6 35 4-39 2-36 (292)
389 cd06318 PBP1_ABC_sugar_binding 30.7 2.5E+02 0.0054 21.7 6.8 35 5-40 2-37 (282)
390 PF04016 DUF364: Domain of unk 30.6 1.6E+02 0.0036 21.1 5.2 74 23-118 23-98 (147)
391 PRK00772 3-isopropylmalate deh 30.4 1.6E+02 0.0034 24.9 5.6 70 1-79 1-73 (358)
392 PF00462 Glutaredoxin: Glutare 30.4 1.2E+02 0.0025 17.6 4.3 31 7-42 2-33 (60)
393 PF10195 Phospho_p8: DNA-bindi 30.2 44 0.00095 20.3 1.8 17 10-26 40-56 (60)
394 cd01968 Nitrogenase_NifE_I Nit 30.0 3.5E+02 0.0075 23.0 9.7 114 14-144 69-189 (410)
395 cd03145 GAT1_cyanophycinase Ty 29.9 1.5E+02 0.0033 22.7 5.3 14 65-78 77-90 (217)
396 PRK05670 anthranilate synthase 29.8 2.4E+02 0.0051 21.0 6.3 31 5-41 2-32 (189)
397 PLN02256 arogenate dehydrogena 29.8 2.9E+02 0.0063 22.6 7.1 74 3-97 37-112 (304)
398 PRK10474 putative PTS system f 29.7 1.6E+02 0.0035 19.1 5.2 46 19-81 2-48 (88)
399 PLN02582 1-deoxy-D-xylulose-5- 29.7 2.1E+02 0.0045 26.5 6.7 32 13-45 551-582 (677)
400 PRK15453 phosphoribulokinase; 29.7 1.4E+02 0.0031 24.4 5.1 41 1-43 1-44 (290)
401 PF13686 DrsE_2: DsrE/DsrF/Drs 29.7 1.3E+02 0.0028 21.8 4.5 37 3-40 3-39 (148)
402 TIGR00014 arsC arsenate reduct 29.6 1.4E+02 0.0031 20.3 4.6 33 7-43 2-34 (114)
403 PRK08659 2-oxoglutarate ferred 29.5 1.1E+02 0.0024 25.9 4.7 50 14-78 282-331 (376)
404 PF13460 NAD_binding_10: NADH( 29.5 95 0.0021 22.5 4.0 80 14-98 5-86 (183)
405 PF01583 APS_kinase: Adenylyls 29.4 1.5E+02 0.0033 21.7 4.9 28 12-41 12-39 (156)
406 PRK03378 ppnK inorganic polyph 29.3 1.3E+02 0.0029 24.4 5.0 35 3-38 6-40 (292)
407 PRK14866 hypothetical protein; 29.2 1.7E+02 0.0037 25.6 5.8 24 4-27 2-25 (451)
408 cd06320 PBP1_allose_binding Pe 29.2 2.1E+02 0.0045 22.1 6.1 37 4-41 1-38 (275)
409 COG0603 Predicted PP-loop supe 29.1 2E+02 0.0043 22.6 5.6 16 179-194 40-55 (222)
410 TIGR00204 dxs 1-deoxy-D-xylulo 29.1 2.3E+02 0.005 25.8 6.9 32 13-45 503-534 (617)
411 PRK14077 pnk inorganic polypho 29.0 1.2E+02 0.0025 24.7 4.6 35 2-38 10-44 (287)
412 PRK14188 bifunctional 5,10-met 29.0 1.3E+02 0.0027 24.7 4.8 45 16-81 167-211 (296)
413 PRK14477 bifunctional nitrogen 29.0 4.8E+02 0.01 25.1 9.2 115 13-144 94-215 (917)
414 PRK09982 universal stress prot 28.9 1.9E+02 0.0041 20.2 5.3 38 2-42 3-41 (142)
415 COG0022 AcoB Pyruvate/2-oxoglu 28.8 83 0.0018 25.9 3.6 32 13-45 208-239 (324)
416 TIGR00090 iojap_ybeB iojap-lik 28.6 1.6E+02 0.0034 19.7 4.5 49 20-97 2-50 (99)
417 TIGR01723 hmd_TIGR 5,10-methen 28.5 3.4E+02 0.0073 22.4 8.7 32 65-97 133-164 (340)
418 COG1393 ArsC Arsenate reductas 28.4 1.7E+02 0.0037 20.2 4.8 34 6-43 3-36 (117)
419 PF00919 UPF0004: Uncharacteri 28.3 88 0.0019 20.9 3.2 31 68-98 33-63 (98)
420 COG1763 MobB Molybdopterin-gua 28.3 1.8E+02 0.0039 21.4 5.1 37 1-40 1-38 (161)
421 PRK13142 hisH imidazole glycer 28.2 2.4E+02 0.0052 21.4 5.9 45 5-80 2-46 (192)
422 TIGR01382 PfpI intracellular p 28.2 2.3E+02 0.0049 20.3 7.6 35 4-41 1-35 (166)
423 cd03796 GT1_PIG-A_like This fa 28.2 1E+02 0.0022 25.8 4.3 37 4-41 1-40 (398)
424 cd03067 PDI_b_PDIR_N PDIb fami 28.2 2E+02 0.0043 19.7 4.9 38 3-42 20-60 (112)
425 PRK06545 prephenate dehydrogen 28.1 3.5E+02 0.0077 22.5 13.0 70 19-97 11-80 (359)
426 PRK14098 glycogen synthase; Pr 27.8 1.3E+02 0.0028 26.4 5.0 36 3-39 6-46 (489)
427 PLN00123 isocitrate dehydrogen 27.8 2.3E+02 0.005 24.0 6.2 64 4-84 32-100 (360)
428 cd01965 Nitrogenase_MoFe_beta_ 27.7 3.9E+02 0.0085 22.9 9.0 70 71-144 116-187 (428)
429 cd08500 PBP2_NikA_DppA_OppA_li 27.6 1.2E+02 0.0026 26.4 4.8 36 5-41 346-381 (499)
430 cd08489 PBP2_NikA The substrat 27.6 1.3E+02 0.0028 25.9 5.0 36 5-41 336-371 (488)
431 cd03784 GT1_Gtf_like This fami 27.4 1.2E+02 0.0026 25.3 4.6 36 4-41 2-37 (401)
432 cd03034 ArsC_ArsC Arsenate Red 27.4 1.7E+02 0.0036 19.9 4.6 33 7-43 2-34 (112)
433 PF00255 GSHPx: Glutathione pe 27.4 83 0.0018 21.5 3.0 42 105-147 18-61 (108)
434 PRK14025 multifunctional 3-iso 27.4 2E+02 0.0044 24.0 5.8 69 1-80 1-69 (330)
435 PF13507 GATase_5: CobB/CobQ-l 27.3 1.1E+02 0.0023 24.5 4.1 54 3-80 2-55 (259)
436 cd06316 PBP1_ABC_sugar_binding 27.3 3.1E+02 0.0067 21.5 7.5 34 4-38 1-35 (294)
437 PF02347 GDC-P: Glycine cleava 27.3 1.7E+02 0.0038 25.3 5.5 28 70-98 196-223 (429)
438 PF01750 HycI: Hydrogenase mat 27.1 65 0.0014 22.4 2.6 53 19-91 3-55 (130)
439 PF10957 DUF2758: Protein of u 27.0 1.1E+02 0.0025 18.5 3.2 35 1-41 1-35 (60)
440 PRK08507 prephenate dehydrogen 26.9 2.2E+02 0.0049 22.5 5.9 24 68-97 55-78 (275)
441 TIGR01616 nitro_assoc nitrogen 26.8 2E+02 0.0044 20.1 5.0 35 5-43 2-36 (126)
442 PF02288 Dehydratase_MU: Dehyd 26.7 81 0.0018 21.8 2.9 34 8-42 7-40 (112)
443 PF05990 DUF900: Alpha/beta hy 26.7 3.1E+02 0.0067 21.3 7.5 22 180-201 66-87 (233)
444 PRK08116 hypothetical protein; 26.6 1E+02 0.0022 24.6 3.9 36 5-42 116-152 (268)
445 PRK09922 UDP-D-galactose:(gluc 26.5 1.3E+02 0.0029 24.7 4.7 39 3-42 1-43 (359)
446 COG5426 Uncharacterized membra 26.4 72 0.0016 24.5 2.7 46 17-78 31-76 (254)
447 PRK05678 succinyl-CoA syntheta 26.4 3.6E+02 0.0077 22.0 10.4 105 14-147 15-124 (291)
448 COG1168 MalY Bifunctional PLP- 26.4 3.1E+02 0.0067 23.4 6.6 73 70-147 105-199 (388)
449 PRK11064 wecC UDP-N-acetyl-D-m 26.3 4.1E+02 0.009 22.7 11.5 30 69-98 73-106 (415)
450 PRK13768 GTPase; Provisional 26.3 1.8E+02 0.0039 22.9 5.2 39 1-42 1-40 (253)
451 PF00731 AIRC: AIR carboxylase 26.1 2.6E+02 0.0057 20.4 7.9 32 3-37 1-32 (150)
452 TIGR01501 MthylAspMutase methy 26.0 2.5E+02 0.0054 20.0 11.5 80 8-110 5-85 (134)
453 PLN02335 anthranilate synthase 26.0 2.8E+02 0.006 21.4 6.1 32 4-41 20-51 (222)
454 cd03140 GATase1_PfpI_3 Type 1 25.9 1.1E+02 0.0024 22.3 3.7 40 70-116 59-99 (170)
455 cd08512 PBP2_NikA_DppA_OppA_li 25.8 1.4E+02 0.0031 25.6 4.9 35 5-40 336-370 (476)
456 PRK10853 putative reductase; P 25.7 1.9E+02 0.0041 19.9 4.6 34 6-43 2-35 (118)
457 PRK11863 N-acetyl-gamma-glutam 25.7 2.6E+02 0.0056 23.1 6.1 34 1-41 1-34 (313)
458 cd06315 PBP1_ABC_sugar_binding 25.6 3.1E+02 0.0067 21.4 6.6 36 4-40 2-38 (280)
459 PF02595 Gly_kinase: Glycerate 25.6 1.3E+02 0.0028 25.6 4.4 40 3-42 1-43 (377)
460 cd03135 GATase1_DJ-1 Type 1 gl 25.5 2.4E+02 0.0051 20.0 5.4 83 20-116 14-101 (163)
461 PF09822 ABC_transp_aux: ABC-t 25.5 3.4E+02 0.0074 21.4 8.0 66 70-144 196-266 (271)
462 cd05013 SIS_RpiR RpiR-like pro 25.2 1.3E+02 0.0029 20.3 3.9 32 4-37 61-92 (139)
463 PF13793 Pribosyltran_N: N-ter 25.0 1.2E+02 0.0027 20.9 3.6 49 16-81 9-57 (116)
464 cd03033 ArsC_15kD Arsenate Red 24.8 2.2E+02 0.0048 19.4 4.8 33 7-43 3-35 (113)
465 cd08516 PBP2_NikA_DppA_OppA_li 24.7 1.6E+02 0.0035 25.0 5.0 36 4-40 319-354 (457)
466 cd03032 ArsC_Spx Arsenate Redu 24.6 2.3E+02 0.005 19.2 5.0 33 6-42 2-34 (115)
467 PF06230 DUF1009: Protein of u 24.5 2.4E+02 0.0052 21.9 5.4 21 125-145 52-72 (214)
468 COG0104 PurA Adenylosuccinate 24.4 1E+02 0.0023 26.4 3.6 49 65-119 361-418 (430)
469 cd02978 KaiB_like KaiB-like fa 24.3 1.4E+02 0.0031 18.8 3.4 38 5-42 3-43 (72)
470 PRK07239 bifunctional uroporph 24.3 1.2E+02 0.0025 25.5 4.0 59 20-98 159-221 (381)
471 cd03814 GT1_like_2 This family 24.2 1.1E+02 0.0024 24.4 3.7 38 4-42 1-41 (364)
472 TIGR03609 S_layer_CsaB polysac 24.2 1.8E+02 0.004 23.2 5.0 96 16-120 14-111 (298)
473 PF09314 DUF1972: Domain of un 24.1 1.6E+02 0.0035 22.2 4.3 32 110-141 3-36 (185)
474 PLN02871 UDP-sulfoquinovose:DA 23.9 1.7E+02 0.0038 25.1 5.1 40 2-42 58-101 (465)
475 TIGR01915 npdG NADPH-dependent 23.9 3.3E+02 0.0072 20.7 8.4 72 4-82 2-79 (219)
476 PTZ00142 6-phosphogluconate de 23.8 5E+02 0.011 22.8 12.4 146 19-196 12-162 (470)
477 PF04056 Ssl1: Ssl1-like; Int 23.7 1.5E+02 0.0032 22.6 4.1 38 3-42 102-140 (193)
478 cd02977 ArsC_family Arsenate R 23.7 1.8E+02 0.0039 19.2 4.2 32 7-42 2-33 (105)
479 COG1058 CinA Predicted nucleot 23.7 2.6E+02 0.0055 22.4 5.5 68 1-83 1-75 (255)
480 COG0061 nadF NAD kinase [Coenz 23.6 46 0.001 26.9 1.4 12 70-81 164-175 (281)
481 PF03738 GSP_synth: Glutathion 23.6 1.8E+02 0.0038 19.1 4.0 25 17-42 14-38 (97)
482 cd03141 GATase1_Hsp31_like Typ 23.6 1.1E+02 0.0023 23.6 3.4 42 68-116 87-131 (221)
483 COG0462 PrsA Phosphoribosylpyr 23.5 1.9E+02 0.0041 24.0 4.8 59 4-82 4-62 (314)
484 cd08517 PBP2_NikA_DppA_OppA_li 23.4 1.8E+02 0.0039 24.9 5.1 35 5-40 336-370 (480)
485 cd01635 Glycosyltransferase_GT 23.4 1.1E+02 0.0024 22.3 3.4 26 13-39 12-37 (229)
486 PRK07024 short chain dehydroge 23.4 1.1E+02 0.0025 23.6 3.6 34 1-40 1-34 (257)
487 PLN00223 ADP-ribosylation fact 23.4 3E+02 0.0065 20.1 6.0 47 68-117 81-127 (181)
488 PRK08366 vorA 2-ketoisovalerat 23.3 4.7E+02 0.01 22.3 9.0 67 5-91 263-331 (390)
489 smart00175 RAB Rab subfamily o 23.3 1.9E+02 0.0041 20.1 4.5 48 66-117 67-114 (164)
490 PF06057 VirJ: Bacterial virul 23.3 1.6E+02 0.0034 22.5 4.1 38 4-42 2-39 (192)
491 cd08513 PBP2_thermophilic_Hb8_ 23.3 1.8E+02 0.0038 25.0 5.0 34 7-41 341-374 (482)
492 cd01971 Nitrogenase_VnfN_like 23.2 4.8E+02 0.01 22.4 9.3 71 71-144 116-191 (427)
493 PLN02404 6,7-dimethyl-8-ribity 23.2 2.5E+02 0.0055 20.2 5.0 39 3-42 8-50 (141)
494 PRK14189 bifunctional 5,10-met 23.2 1E+02 0.0022 25.1 3.2 18 65-82 195-212 (285)
495 TIGR00873 gnd 6-phosphoglucona 23.2 5.1E+02 0.011 22.7 11.9 147 18-196 9-159 (467)
496 PF02593 dTMP_synthase: Thymid 23.2 3.7E+02 0.0079 21.0 9.7 104 7-143 2-107 (217)
497 cd08514 PBP2_AppA_like The sub 23.1 1.9E+02 0.0041 24.8 5.2 36 5-41 341-376 (483)
498 PF08433 KTI12: Chromatin asso 23.1 1.7E+02 0.0037 23.5 4.5 35 4-40 2-37 (270)
499 cd01974 Nitrogenase_MoFe_beta 23.1 4.9E+02 0.011 22.4 9.0 69 71-143 120-191 (435)
500 PRK14186 bifunctional 5,10-met 23.1 1.5E+02 0.0033 24.3 4.2 18 65-82 195-212 (297)
No 1
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=100.00 E-value=3.8e-40 Score=252.85 Aligned_cols=199 Identities=48% Similarity=0.753 Sum_probs=168.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||+|||+|++|||++||++++++++++.|++++++++.+..|.++.....|....+ .+....+++.+||+||||||
T Consensus 1 M~-kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MA-KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQA-APVATPDELADYDAIIFGTP 78 (200)
T ss_pred CC-eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccC-CCccCHHHHHhCCEEEEEec
Confidence 65 99999999999999999999999985468999999998777766654443433211 12123789999999999999
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
+|+|++++.+|.|+|++..+|....|.||++++|+++||.+|+.+.++.++...+.++||.+++.++. +..++..+..+
T Consensus 79 ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~~~~-~~~~~~~~~~~ 157 (200)
T PRK03767 79 TRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGLPYA-FQGQMDVDEVT 157 (200)
T ss_pred ccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCCCCc-ccccccccccc
Confidence 99999999999999999887766679999999999999987888889999999999999999998776 44544445567
Q ss_pred CcccccceeecC-CCCCCCCHHHHHHHHHHhHHHHHHHHHhhC
Q 028917 161 GGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 202 (202)
Q Consensus 161 ~~~~~g~~~~~~-~~~~~p~e~~~~~a~~~g~~l~~~~~~~~~ 202 (202)
+|++||+.++.+ +++.+|+++|++.|+.+|+|+++.+++|++
T Consensus 158 ~g~~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~~~~~~~ 200 (200)
T PRK03767 158 GGSPYGATTIAGGDGSRQPSENELAGARYQGRHVAEIAAKLAG 200 (200)
T ss_pred CCcccceeeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999988776 677899999999999999999999999874
No 2
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=100.00 E-value=9.4e-40 Score=249.78 Aligned_cols=195 Identities=48% Similarity=0.771 Sum_probs=168.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||+|||+|++|||++||+++++++++..|++++++++.+..+.+|+.+..|+.+ ++.+....+++.+||+||||||+|+
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~aD~ii~GSPty~ 80 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTD-QTAPVATPQELADYDAIIFGTPTRF 80 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcc-cCCccCCHHHHHHCCEEEEEecccc
Confidence 899999999999999999999999872399999999988777777776656533 3334333578999999999999999
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcc
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGS 163 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~ 163 (202)
|++++.||.|+|++..+|....|.||++++|+++||.+|+.+.++.++...+.++||++++.++. |+..+..+..+++.
T Consensus 81 g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~~~~-~~~~~~~~~~~gg~ 159 (197)
T TIGR01755 81 GNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPLPYA-AQEQMGVDEVRGGS 159 (197)
T ss_pred cCccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCCCcc-cccccccccccCCC
Confidence 99999999999999888776679999999999999987888889999999999999999998876 44455556678899
Q ss_pred cccceeecC-CCCCCCCHHHHHHHHHHhHHHHHHHHHh
Q 028917 164 SYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKL 200 (202)
Q Consensus 164 ~~g~~~~~~-~~~~~p~e~~~~~a~~~g~~l~~~~~~~ 200 (202)
+||+.++.+ +++.+|++.|++.|+.+|+|+++.+++|
T Consensus 160 ~~G~~~~~~~~~~~~p~~~d~~~a~~~g~r~a~~a~~l 197 (197)
T TIGR01755 160 PYGATTIAGGDGSRQPSAEELDIARYQGRHVAGLAAKL 197 (197)
T ss_pred CcceeeEcCCCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 999988876 7778999999999999999999999875
No 3
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=224.15 Aligned_cols=200 Identities=67% Similarity=1.057 Sum_probs=187.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
|.||.||++|.+|+-..+|+++.++++. .|-+.+++++.++++++.+.++..+.++.|+|....+.|.+||+++||.|+
T Consensus 1 ~~kv~iv~ys~yghv~~lAe~~kkGie~-a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PT 79 (203)
T KOG3135|consen 1 MPKVAIVIYSTYGHVAKLAEAEKKGIES-AGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPT 79 (203)
T ss_pred CceEEEEEEEcccHHHHHHHHHHhhhhc-cCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccc
Confidence 3599999999999999999999999999 566999999999999999999999999778887678999999999999999
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc-CCCCcccccccc
Q 028917 82 RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYT-FGSGMFEMNEVK 160 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~-~~~~~~~~~~~~ 160 (202)
.+|++|+++|+|+|+...+|..+.|.||++++|.++|+.+||++.+..+....|.+|||+.||.+|. .+..+++|+.++
T Consensus 80 RfG~~~AQ~kaF~D~TggLW~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGmifVPlGYkn~~a~m~~me~V~ 159 (203)
T KOG3135|consen 80 RFGNMPAQWKAFWDSTGGLWAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGMIFVPLGYKNFGAEMFEMEEVH 159 (203)
T ss_pred cccCcHHHHHHHHhccCchhhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcceEEEecccchhhhhhhhhhccc
Confidence 9999999999999999999999999999999999999878899998888899999999999999998 556889999999
Q ss_pred CcccccceeecC-CCCCCCCHHHHHHHHHHhHHHHHHHHHhhC
Q 028917 161 GGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 202 (202)
Q Consensus 161 ~~~~~g~~~~~~-~~~~~p~e~~~~~a~~~g~~l~~~~~~~~~ 202 (202)
++++||++++++ ||++.|++-+++.++-.|+-+++.+++|+.
T Consensus 160 Ggsp~GAGt~Ag~DGsR~ps~lEL~~a~~qGk~f~~~~kkl~~ 202 (203)
T KOG3135|consen 160 GGSPWGAGTFAGIDGSREPSELELQQAEIQGKYFAEIVKKLKG 202 (203)
T ss_pred CCCCCCCceeecCCCCCCCCHHHHHHHHHhhHHHHHHHHHhcC
Confidence 999999999999 999999999999999999999999999863
No 4
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=99.97 E-value=7.4e-29 Score=191.25 Aligned_cols=194 Identities=39% Similarity=0.520 Sum_probs=152.4
Q ss_pred eEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHH---hhc---CCCCCCCCCCcCChhhhccCCee
Q 028917 4 KIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVIL---QKM---KAPPKTNDVPVIRPHQLKEADGF 75 (202)
Q Consensus 4 kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~l~~ad~i 75 (202)
|++.|++|+ +|||.++++++++++++ .|+|++++++.+.....|. .|. .|..++|++. .+.++|.+||+|
T Consensus 2 ki~~I~gs~r~~G~t~~l~~~~~~g~~~-~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~-~i~~~l~~aD~i 79 (207)
T COG0655 2 KILGINGSPRSNGNTAKLAEAVLEGAEE-AGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMN-EIYEKLLEADGI 79 (207)
T ss_pred eeeEEEecCCCCCcHHHHHHHHHHHHHH-cCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHH-HHHHHHHHCCEE
Confidence 788888887 59999999999999999 8999999999986322232 222 3666645556 478999999999
Q ss_pred EEeccccCCcchHHHHHHHHh-hhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcc
Q 028917 76 LFGFPSRFGVMAAQCKAFFDA-TYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMF 154 (202)
Q Consensus 76 i~gsP~y~g~~~~~~k~fld~-~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~ 154 (202)
|||||||+|+++++||.|||| ...+|.+..|++|+.+.|++.+..+|+++.++..+...+.++++.+++.++.. ...
T Consensus 80 I~gsPvy~g~vsa~~K~fiDR~~~~~~~~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 157 (207)
T COG0655 80 IFGSPVYFGNVSAQMKAFIDRSTGPLWAPGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVVGLGYGN--AVV 157 (207)
T ss_pred EEeCCeecCCchHHHHHHHhhcchhhcccchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEecccccc--ccc
Confidence 999999999999999999999 67778767899999999999988778777789999999999999999877752 111
Q ss_pred c--cccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 155 E--MNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 155 ~--~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
+ .+....+.+++....+...-.++.+.+++.++.++++.++...++.
T Consensus 158 g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (207)
T COG0655 158 GSGVDLIKGGDPYGAVTQDEEDLSRPSALGLKMARLLGKIVAENAAKLK 206 (207)
T ss_pred CcccccccCCCCcccceeccccccccchHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1234567777765554422223777888899999998888877664
No 5
>PRK06756 flavodoxin; Provisional
Probab=99.96 E-value=1.1e-27 Score=175.53 Aligned_cols=146 Identities=20% Similarity=0.275 Sum_probs=123.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||+|||+|++|||+++|+.|++++++ .|++++++++.+. ....++.++|.||||+|
T Consensus 1 mm-kv~IiY~S~tGnTe~vA~~ia~~l~~-~g~~v~~~~~~~~--------------------~~~~~~~~~d~vi~gsp 58 (148)
T PRK06756 1 MS-KLVMIFASMSGNTEEMADHIAGVIRE-TENEIEVIDIMDS--------------------PEASILEQYDGIILGAY 58 (148)
T ss_pred Cc-eEEEEEECCCchHHHHHHHHHHHHhh-cCCeEEEeehhcc--------------------CCHHHHhcCCeEEEEeC
Confidence 55 99999999999999999999999998 8999999888652 12457889999999999
Q ss_pred ccC-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 81 SRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 81 ~y~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
+|+ |.+|..++.|++.+.. ..++||++++|+++++..++...++..+.+.|...|+.++..+..+
T Consensus 59 t~~~g~~p~~~~~fl~~l~~----~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~---------- 124 (148)
T PRK06756 59 TWGDGDLPDDFLDFYDAMDS----IDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKV---------- 124 (148)
T ss_pred CCCCCCCcHHHHHHHHHHhc----CCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEE----------
Confidence 996 8888889999999853 3689999999999776444456778899999999999998765431
Q ss_pred cCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 160 KGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
..+|+++|++++++||++|++.+
T Consensus 125 ---------------~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 125 ---------------ELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred ---------------ecCCCHHHHHHHHHHHHHHHHhc
Confidence 25799999999999999998754
No 6
>PRK05569 flavodoxin; Provisional
Probab=99.96 E-value=1.5e-27 Score=173.44 Aligned_cols=138 Identities=27% Similarity=0.349 Sum_probs=114.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+ ||+|+|+|++|||+++|+.|++++++ .|++++++++.+. ...++.+||+||||||
T Consensus 1 m~-ki~iiY~S~tGnT~~iA~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~~~~~d~iilgsP 57 (141)
T PRK05569 1 MK-KVSIIYWSCGGNVEVLANTIADGAKE-AGAEVTIKHVADA---------------------KVEDVLEADAVAFGSP 57 (141)
T ss_pred CC-eEEEEEECCCCHHHHHHHHHHHHHHh-CCCeEEEEECCcC---------------------CHHHHhhCCEEEEECC
Confidence 44 99999999999999999999999998 8999999888762 3457899999999999
Q ss_pred ccCCcc--hHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccc
Q 028917 81 SRFGVM--AAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNE 158 (202)
Q Consensus 81 ~y~g~~--~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~ 158 (202)
+|++++ |+.++.|+|++.. ..++||++++|+|+||..+. ++..+...+...|+.+++. +.
T Consensus 58 ty~~~~~~~~~~~~~~~~l~~----~~~~~K~v~~f~t~g~~~~~---~~~~~~~~l~~~g~~~~~~-~~---------- 119 (141)
T PRK05569 58 SMDNNNIEQEEMAPFLDQFKL----TPNENKKCILFGSYGWDNGE---FMKLWKDRMKDYGFNVIGD-LA---------- 119 (141)
T ss_pred CcCCCcCChHHHHHHHHHhhc----cCcCCCEEEEEeCCCCCCCc---HHHHHHHHHHHCCCeEeee-EE----------
Confidence 999885 3689999999853 24689999999999985332 4566777888889988763 21
Q ss_pred ccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHH
Q 028917 159 VKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVA 194 (202)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~ 194 (202)
+ .+.|+++++++|++||++|+
T Consensus 120 -----------~----~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 120 -----------V----NESPNKEELNSAKELGKKLA 140 (141)
T ss_pred -----------E----ccCCCHHHHHHHHHHHHHHh
Confidence 1 15699999999999999986
No 7
>PRK05568 flavodoxin; Provisional
Probab=99.95 E-value=3.6e-27 Score=171.63 Aligned_cols=138 Identities=25% Similarity=0.337 Sum_probs=115.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+|++|+|+|++|||+++|+.|++++++ .|++++++++.+. ...++.++|+||||||+|
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~~~~~d~iilgsp~y 59 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKE-NGAEVKLLNVSEA---------------------SVDDVKGADVVALGSPAM 59 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEECCCC---------------------CHHHHHhCCEEEEECCcc
Confidence 489999999999999999999999998 8999999998762 245789999999999999
Q ss_pred CCcch--HHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 83 FGVMA--AQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 83 ~g~~~--~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
+++++ +.++.|++++. ..+++|++++|+++||..+ .+...+...+...|+.+++.+...
T Consensus 60 ~~~~~~~~~~~~f~~~~~-----~~~~~k~~~~f~t~G~~~~---~~~~~~~~~l~~~g~~~~~~~~~~----------- 120 (142)
T PRK05568 60 GDEVLEEGEMEPFVESIS-----SLVKGKKLVLFGSYGWGDG---EWMRDWVERMEGYGANLVNEGLIV----------- 120 (142)
T ss_pred CcccccchhHHHHHHHhh-----hhhCCCEEEEEEccCCCCC---hHHHHHHHHHHHCCCEEeCCcEEE-----------
Confidence 99874 68999999984 2568999999999988433 245667777888999998754431
Q ss_pred CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 161 GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
+..|+++++++|+++|++|++
T Consensus 121 --------------~~~p~~~~l~~~~~~g~~l~~ 141 (142)
T PRK05568 121 --------------NNTPEGEGIEKCKALGEALAK 141 (142)
T ss_pred --------------ecCCCHHHHHHHHHHHHHHHh
Confidence 146999999999999999975
No 8
>PRK06703 flavodoxin; Provisional
Probab=99.94 E-value=8.9e-26 Score=165.93 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=122.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| |++|+|+|.+|||+++|+.|++++++ .|++++++++.+. ...++.++|.|||+||
T Consensus 1 mm-kv~IiY~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~viigsp 57 (151)
T PRK06703 1 MA-KILIAYASMSGNTEDIADLIKVSLDA-FDHEVVLQEMDGM---------------------DAEELLAYDGIILGSY 57 (151)
T ss_pred CC-eEEEEEECCCchHHHHHHHHHHHHHh-cCCceEEEehhhC---------------------CHHHHhcCCcEEEEEC
Confidence 66 99999999999999999999999998 8999999888652 2346889999999999
Q ss_pred cc-CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 81 SR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 81 ~y-~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
+| .|.+|..++.|++++.. ..+++|++++|++++|..+....+...+...|...|+.+++....+
T Consensus 58 t~~~g~~p~~~~~f~~~l~~----~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~---------- 123 (151)
T PRK06703 58 TWGDGDLPYEAEDFHEDLEN----IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKI---------- 123 (151)
T ss_pred CCCCCcCcHHHHHHHHHHhc----CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEE----------
Confidence 99 48888899999998853 3578999999999887533334566778888999999998755431
Q ss_pred cCcccccceeecCCCCCCCC-HHHHHHHHHHhHHHHHHHHHhh
Q 028917 160 KGGSSYGAGTFAADGSRQPT-DLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~-e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
...|+ +++++++++++++|++.++.++
T Consensus 124 ---------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 151 (151)
T PRK06703 124 ---------------ELAPETDEDVEKCSNFAIAFAEKFAQMN 151 (151)
T ss_pred ---------------ecCCCchhHHHHHHHHHHHHHHHHHhcC
Confidence 13575 7999999999999999887653
No 9
>PRK06242 flavodoxin; Provisional
Probab=99.94 E-value=1.3e-25 Score=164.79 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=111.0
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
|++|+|+|+ +|||+++|+.|++++. ++++++.+. ...++.++|.||||+|+|
T Consensus 2 k~~IiY~S~~tGnT~~~A~~ia~~l~------~~~~~i~~~---------------------~~~~~~~~d~ii~g~pvy 54 (150)
T PRK06242 2 KALIVYASVHHGNTEKIAKAIAEVLD------AEVIDPGDV---------------------NPEDLSEYDLIGFGSGIY 54 (150)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHhcC------cEEecHHHC---------------------CcccHhHCCEEEEeCchh
Confidence 899999999 7999999999999984 356666541 235689999999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGG 162 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~ 162 (202)
++++++.++.|++++. .++||++++|+|+||..++. +..+...+..+|+.+++.....+ .
T Consensus 55 ~~~~~~~~~~fl~~~~------~~~~k~~~~f~t~g~~~~~~---~~~l~~~l~~~g~~~~~~~~~~g-----------~ 114 (150)
T PRK06242 55 FGKFHKSLLKLIEKLP------PVSGKKAFIFSTSGLPFLKY---HKALKKKLKEKGFEIVGEFSCKG-----------F 114 (150)
T ss_pred cCCcCHHHHHHHHhhh------hhcCCeEEEEECCCCCcchH---HHHHHHHHHHCCCEEEEEEecCC-----------c
Confidence 9999999999999983 35899999999999854432 56777788899999987422111 1
Q ss_pred cccccee-ecCCCCCCCCHHHHHHHHHHhHHHHHH
Q 028917 163 SSYGAGT-FAADGSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 163 ~~~g~~~-~~~~~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
..++... ..+....+|++++++.|+++|++|++.
T Consensus 115 ~~~~~~~~~~~~~~~~p~~~d~~~~~~~gk~l~~~ 149 (150)
T PRK06242 115 DTFGPFKLIGGINKGHPNEKDLENAKEFAENLKKK 149 (150)
T ss_pred ccccchhhcCCccCCCcCHHHHHHHHHHHHHHhhc
Confidence 1111100 011234679999999999999999754
No 10
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.93 E-value=6.1e-25 Score=159.25 Aligned_cols=138 Identities=23% Similarity=0.317 Sum_probs=114.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFG 84 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g 84 (202)
|+|+|+|++|||+++|+.|++++.+ .|++++++++.+. ...++.++|.||||+|||++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~iilgspty~~ 58 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKE-AGAEVDLLEVADA---------------------DAEDLLSYDAVLLGCSTWGD 58 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHh-cCCeEEEEEcccC---------------------CHHHHhcCCEEEEEcCCCCC
Confidence 5899999999999999999999998 8999999998752 34567889999999999985
Q ss_pred -cch-HHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCc
Q 028917 85 -VMA-AQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGG 162 (202)
Q Consensus 85 -~~~-~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~ 162 (202)
.+| +.++.|++++.. ..++||++++|+++||... ...+...+...|..+|+.++..+...
T Consensus 59 g~~p~~~~~~f~~~l~~----~~~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~------------- 120 (140)
T TIGR01753 59 EDLEQDDFEPFFEELED----IDLGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKV------------- 120 (140)
T ss_pred CCCCcchHHHHHHHhhh----CCCCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeee-------------
Confidence 476 899999999853 3579999999999887432 34567888888999999998754421
Q ss_pred ccccceeecCCCCCCCCHHHHHHHHHHhHHHH
Q 028917 163 SSYGAGTFAADGSRQPTDLELQQAFHQGKYVA 194 (202)
Q Consensus 163 ~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~ 194 (202)
..+|++++++++++++++|+
T Consensus 121 ------------~~~p~~~~~~~~~~~~~~l~ 140 (140)
T TIGR01753 121 ------------DGDPEEEDLDKCREFAKDLA 140 (140)
T ss_pred ------------ecCCCHHHHHHHHHHHHHhC
Confidence 25699999999999999874
No 11
>PRK07308 flavodoxin; Validated
Probab=99.93 E-value=1.3e-24 Score=158.82 Aligned_cols=144 Identities=18% Similarity=0.127 Sum_probs=118.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+ |+.|+|+|++|||+++|+.|++++.+ .|++++++++.+. ...++.++|.|||++|
T Consensus 1 m~-~~~IvY~S~tGnTe~iA~~ia~~l~~-~g~~~~~~~~~~~---------------------~~~~l~~~d~vi~g~~ 57 (146)
T PRK07308 1 MA-LAKIVYASMTGNTEEIADIVADKLRE-LGHDVDVDECTTV---------------------DASDFEDADIAIVATY 57 (146)
T ss_pred Cc-eEEEEEECCCchHHHHHHHHHHHHHh-CCCceEEEecccC---------------------CHhHhccCCEEEEEeC
Confidence 66 89999999999999999999999998 8999998888652 2346789999999999
Q ss_pred ccC-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 81 SRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 81 ~y~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
+|. |.+|..++.|++.+.. ..++||++++|+++....++...+...+...|...|+.++.....+
T Consensus 58 t~g~G~~p~~~~~fl~~l~~----~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~---------- 123 (146)
T PRK07308 58 TYGDGELPDEIVDFYEDLAD----LDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKV---------- 123 (146)
T ss_pred ccCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEE----------
Confidence 997 8899999999999854 3578999999999654334444567777788888899887644431
Q ss_pred cCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHH
Q 028917 160 KGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
+..|+++++++++++|++|++.
T Consensus 124 ---------------~~~p~~~~~~~~~~~~~~l~~~ 145 (146)
T PRK07308 124 ---------------DLAAEDEDIERLEAFAEELAAK 145 (146)
T ss_pred ---------------eCCCCHHHHHHHHHHHHHHHhh
Confidence 2459999999999999999864
No 12
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=99.92 E-value=5.1e-25 Score=161.98 Aligned_cols=139 Identities=28% Similarity=0.331 Sum_probs=111.5
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc---CCCCCCCCCCcCChhhhccCCeeEE
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKM---KAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
|||+||++|+ +|||.++++.+++.+++ .|++++++++.+. +..++.+. .|..+ |++. .+.+++.+||+|||
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~-~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~-d~~~-~~~~~l~~aD~iI~ 76 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEE-AGAEVEVIDLADY-PLPCCDGDFECPCYIP-DDVQ-ELYDKLKEADGIIF 76 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHH-TTEEEEEEECTTS-HCHHHHHHHHHTGCTS-HHHH-HHHHHHHHSSEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHH-cCCEEEEEecccc-chhhcccccccccCCc-HHHH-HHHhceecCCeEEE
Confidence 3999999998 49999999999999999 7999999999997 32233221 24444 4444 36889999999999
Q ss_pred eccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 78 GFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
+||+|++++|+.||+|+|++.. +....+++|++++++++|+..++ ..+...+...+..+||.+++..+
T Consensus 77 ~sP~y~~~~s~~lK~~lD~~~~-~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~~~ 144 (152)
T PF03358_consen 77 ASPVYNGSVSGQLKNFLDRLSC-WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPSGV 144 (152)
T ss_dssp EEEEBTTBE-HHHHHHHHTHHH-THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECCSE
T ss_pred eecEEcCcCChhhhHHHHHhcc-ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCCcE
Confidence 9999999999999999999964 33467899999999888764444 45788888899999999998644
No 13
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=181.93 Aligned_cols=144 Identities=18% Similarity=0.235 Sum_probs=120.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhh--ccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGAN--SVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
+||+|||+|++|||++||++|+++++ + .|++|+++++.+..+. ....++.+||+||||||
T Consensus 248 ~kv~IvY~S~~GnTe~mA~~ia~g~~~~~-~g~~v~~~~~~~~~~~-----------------~i~~~~~~~d~ii~Gsp 309 (394)
T PRK11921 248 NQVTILYDTMWNSTRRMAEAIAEGIKKAN-KDVTVKLYNSAKSDKN-----------------DIITEVFKSKAILVGSS 309 (394)
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHhhcC-CCCeEEEEECCCCCHH-----------------HHHHHHHhCCEEEEECC
Confidence 58999999999999999999999998 6 7999999999874221 13456788999999999
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
||++++.+.++.|++.+.. ..++||++++|+++||. | .+...+.+.|...|+.+++.+..+
T Consensus 310 T~~~~~~~~~~~~l~~l~~----~~~~~K~~a~FGsygw~-g---~a~~~~~~~l~~~g~~~v~~~~~~----------- 370 (394)
T PRK11921 310 TINRGILSSTAAILEEIKG----LGFKNKKAAAFGSYGWS-G---ESVKIITERLKKAGFEIVNDGIRE----------- 370 (394)
T ss_pred CcCccccHHHHHHHHHhhc----cCcCCCEEEEEecCCCc-c---HHHHHHHHHHHHCCCEEccCcEEE-----------
Confidence 9999888899999999854 36899999999999984 3 246778888899999998755431
Q ss_pred CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 161 GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
...|+++++++|+++|++|++.+
T Consensus 371 --------------~~~p~~~~~~~~~~~g~~la~~~ 393 (394)
T PRK11921 371 --------------LWNPDDEALDRCRSFGENFAESL 393 (394)
T ss_pred --------------EeCCCHHHHHHHHHHHHHHHHhh
Confidence 14699999999999999999754
No 14
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.91 E-value=1.4e-23 Score=179.64 Aligned_cols=144 Identities=19% Similarity=0.267 Sum_probs=119.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccC--CceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVL--GVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
+||+|+|+|++|||++||++|++++++ . |++++++++.+..+. .+..++.+||+||||||
T Consensus 252 ~kv~IvY~S~~GnTe~mA~~ia~gl~~-~g~gv~v~~~~v~~~~~~-----------------~i~~~~~~ad~vilGsp 313 (479)
T PRK05452 252 DRITIFYDTMSNNTRMMADAIAQGIAE-VDPRVAVKIFNVARSDKN-----------------EILTNVFRSKGVLVGSS 313 (479)
T ss_pred CcEEEEEECCccHHHHHHHHHHHHHHh-hCCCceEEEEECCCCCHH-----------------HHHhHHhhCCEEEEECC
Confidence 589999999999999999999999997 5 678999999764221 13456678999999999
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
||++++.+.|+.|++.+.. ..++||++++|+|+||. |+ +.+.+...|...|+.++. +..+
T Consensus 314 T~~~~~~p~~~~fl~~l~~----~~l~gK~~~vFGSygw~-g~---a~~~~~~~l~~~g~~~~~-~l~~----------- 373 (479)
T PRK05452 314 TMNNVMMPKIAGLLEEITG----LRFRNKRASAFGSHGWS-GG---AVDRLSTRLQDAGFEMSL-SLKA----------- 373 (479)
T ss_pred ccCCcchHHHHHHHHHhhc----cCcCCCEEEEEECCCcC-cH---HHHHHHHHHHHCCCEEec-cEEE-----------
Confidence 9999999999999999864 35899999999999994 33 456777788889999874 3321
Q ss_pred CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHH
Q 028917 161 GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~ 198 (202)
...|++++++++++||++|++.++
T Consensus 374 --------------~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 374 --------------KWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred --------------EecCCHHHHHHHHHHHHHHHHHHh
Confidence 246999999999999999998776
No 15
>PRK09267 flavodoxin FldA; Validated
Probab=99.91 E-value=1.8e-22 Score=151.01 Aligned_cols=161 Identities=19% Similarity=0.160 Sum_probs=117.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||+|+|+|.+|||+++|+.|++.+.. .+++++++.+. ...++.++|.||||+|
T Consensus 1 mm-ki~IiY~S~tGnT~~vA~~Ia~~l~~---~~~~~~~~~~~---------------------~~~~l~~~d~vi~g~p 55 (169)
T PRK09267 1 MA-KIGIFFGSDTGNTEDIAKMIQKKLGK---DVADVVDIAKA---------------------SKEDFEAYDLLILGIP 55 (169)
T ss_pred CC-eEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEhhhC---------------------CHhhHhhCCEEEEEec
Confidence 66 99999999999999999999999964 26788887652 2356889999999999
Q ss_pred ccC-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCCh---HHHHHHHHHHHHHcCcEEecCCCcCCCCcccc
Q 028917 81 SRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQ---ELTALTAVTQLAHHGMLFVPLGYTFGSGMFEM 156 (202)
Q Consensus 81 ~y~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~---~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~ 156 (202)
+|+ |.+|+.++.|++.+.. ..|+||++++|++++.. +.. ..++..+.+.+..+|+.+++.....+..+...
T Consensus 56 t~~~G~~~~~~~~fl~~~~~----~~l~~k~vaifg~g~~~-~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~ 130 (169)
T PRK09267 56 TWGYGELQCDWDDFLPELEE----IDFSGKKVALFGLGDQE-DYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEAS 130 (169)
T ss_pred CcCCCCCCHHHHHHHHHHhc----CCCCCCEEEEEecCCCC-cchHHHHHHHHHHHHHHHHCCCEEECccCCCCcccccc
Confidence 995 8899999999998742 36889999999886542 221 34577788889999999998622222223332
Q ss_pred ccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 157 NEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
...+.+.++|+.. |.+..++..| ++.+++.++|..
T Consensus 131 ~~~~~~~~~g~~~---d~~~~~~~td-~~i~~w~~~i~~ 165 (169)
T PRK09267 131 KAVDDGKFVGLAL---DEDNQSELTD-ERIEAWVKQIKP 165 (169)
T ss_pred ceeeCCEEEEEEe---cCCCchhhhH-HHHHHHHHHHHH
Confidence 3344566676643 3344455556 777777777664
No 16
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=99.90 E-value=9.5e-23 Score=154.90 Aligned_cols=169 Identities=15% Similarity=0.069 Sum_probs=124.6
Q ss_pred eEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
||++|++|+ .++|.++++.+++.+.+ .|+++++++|.+..+.+|..+. ..++++. ...+++.+||+|||+||+
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~-~g~ev~~idL~~l~~~~~~~~~---~~~~~~~-~~~~~i~~AD~iIi~tP~ 76 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNG-LGVEVYHWNLQNFAPEDLLYAR---FDSPALK-TFTEQLAQADGLIVATPV 76 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHh-CCCEEEEEEccCCChHHHHhcc---CCCHHHH-HHHHHHHHCCEEEEECCc
Confidence 899999998 58999999999999998 8999999999875444443321 1112222 257899999999999999
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHH-HHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 82 RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTA-LTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l-~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
||+++|+.+|+|||++.. ..|+||++++++++|+ .++. ..+ ..++..+...|+.+++.+......
T Consensus 77 Y~~s~pg~LKn~iD~l~~----~~l~~K~v~iiat~G~-~~~~-~~~~~~lr~~l~~l~a~~~~~~~~~~~~-------- 142 (191)
T PRK10569 77 YKASFSGALKTLLDLLPE----RALEHKVVLPLATGGS-VAHM-LAVDYALKPVLSALKAQEILHGVFADDS-------- 142 (191)
T ss_pred cCCCCCHHHHHHHHhCCh----hhhCCCEEEEEEecCC-chhH-HHHHHHHHHHHHHcCCeecCceEEEech--------
Confidence 999999999999999842 4689999999988765 3333 344 456667788899888765432100
Q ss_pred CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHH
Q 028917 161 GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~ 198 (202)
... .+ +..+..|++..++.+++.+++++.+.
T Consensus 143 ---~~~--~~--d~~~~~d~~~~~rl~~~~~~~~~~~~ 173 (191)
T PRK10569 143 ---QVI--DY--HHQPQFTPNLQTRLDEALETFWQALH 173 (191)
T ss_pred ---hhh--cc--ccccccCHHHHHHHHHHHHHHHHHHc
Confidence 000 01 22244589999999999999987764
No 17
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=99.87 E-value=1.9e-21 Score=146.13 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=117.5
Q ss_pred eEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCC-CCCCCCcCChhhhccCCeeEEecc
Q 028917 4 KIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPP-KTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 4 kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
||++|.+|+ +|+|.++++.+++.+.+..|+++++++|.+..| |+.+..|.. .++++. ...+++.+||+|||+||
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~AD~iIi~tP 77 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAP--SLGGALWRSQLPPDAE-RILQAIESADLLVVGSP 77 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcCh--hhccccccCCCCHHHH-HHHHHHHHCCEEEEECC
Confidence 699999998 589999999999998632689999999987433 121111111 112332 35789999999999999
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
+||+++|+.+|+|||++.. ..|.||++++++++|+..++ ......+...+...|+.+++.....
T Consensus 78 ~Y~~s~~~~LKn~lD~~~~----~~l~~K~~~~v~~~g~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~----------- 141 (174)
T TIGR03566 78 VYRGSYTGLFKHLFDLVDP----NALIGKPVLLAATGGSERHA-LMVEHQLRPLFGFFQALTLPTGVYA----------- 141 (174)
T ss_pred cCcCcCcHHHHHHHHhcCH----hHhCCCEEEEEEecCCccch-HHHHHHHHHHHHHhCcccccceEEE-----------
Confidence 9999999999999999853 46899999998887653332 2223345556777787776532211
Q ss_pred CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHH
Q 028917 161 GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~ 198 (202)
....|. ++. ..|++..++++++.+.+++.+.
T Consensus 142 -----~~~~~~-~g~-l~d~~~~~~l~~~~~~~~~~~~ 172 (174)
T TIGR03566 142 -----SDADFA-DYR-LASEALRARIALAVDRAAPLLA 172 (174)
T ss_pred -----Ehhhhc-ccc-ccCHHHHHHHHHHHHHHHHHhc
Confidence 000121 222 3577788899999998888764
No 18
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=99.87 E-value=3.8e-21 Score=144.09 Aligned_cols=167 Identities=17% Similarity=0.098 Sum_probs=114.9
Q ss_pred eEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
||++|++|+ .|+|.++++.+.+.+++ .|.+++++++.+.....|..+. ..++++. ...+++.+||+|||+||+
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~-~~~~~~~idl~~l~~~~~~~~~---~~~~~~~-~l~~~i~~AD~iI~~sP~ 75 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQE-QGVEVDHLSVRDLPAEDLLFAR---FDSPAIK-AATAQVAQADGVVVATPV 75 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHH-CCCeEEEEEecCCChHHhhhcC---CCCHHHH-HHHHHHHHCCEEEEECCc
Confidence 689999998 58999999999999998 7999999999874222232221 1112233 357899999999999999
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHH-HHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 82 RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTA-LTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l-~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
||+++|+.+|+|||++.. ..|+||++++++++|. .++. ..+ ..+...+...|+.+++.....+.
T Consensus 76 Y~~sip~~LK~~iD~~~~----~~l~~K~v~~~~~gg~-~~~~-~~~~~~l~~~l~~l~~~~~~~~v~~~~--------- 140 (171)
T TIGR03567 76 YKASYSGVLKALLDLLPQ----RALRGKVVLPIATGGS-IAHL-LAIDYALKPVLSALGARHILPGVFALD--------- 140 (171)
T ss_pred ccCCCCHHHHHHHHhCCh----hhhCCCEEEEEEcCCc-hhHH-HHHHHHHHHHHHHcCCccccceEEEEh---------
Confidence 999999999999999852 4689999998877654 3332 233 34666777888865443332110
Q ss_pred CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 161 GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
.. ..++.+|....|++..++++++++++++
T Consensus 141 ---~~--~~~d~~g~~~~d~~~~~~l~~~~~~~~~ 170 (171)
T TIGR03567 141 ---SQ--IERDEDGTLQLDEEIKERLDEALEDLVQ 170 (171)
T ss_pred ---hH--hccccCCccccCHHHHHHHHHHHHHHHh
Confidence 00 0122223211477778888888887764
No 19
>PRK12359 flavodoxin FldB; Provisional
Probab=99.86 E-value=5e-20 Score=137.19 Aligned_cols=162 Identities=20% Similarity=0.189 Sum_probs=117.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR- 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y- 82 (202)
||+|+|+|.+|||+.+|+.|++.+.. ..++++++.+. ...++.+||.||||+|||
T Consensus 2 ki~I~Y~S~TGNTe~vAe~I~~~lg~---~~v~v~~i~~~---------------------~~~~l~~yD~iIlG~pTw~ 57 (172)
T PRK12359 2 KIGLFYGSSTCYTEMAAEKIRDIIGE---ELVDLHNLKDD---------------------PPKLMEQYDVLILGIPTWD 57 (172)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHhCC---CeEEEEEcccC---------------------ChhHHccCCEEEEEecccC
Confidence 89999999999999999999999843 24677777652 356788999999999998
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCC-CC-hHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG-GG-QELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~-g~-~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
.|.++..+..|++.+.. ..|+||++++|+++.+.+ +. ...++..+.+.+...|..+++.....|..+..+..+.
T Consensus 58 ~Gel~~d~~~~~~~l~~----~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~ 133 (172)
T PRK12359 58 FGEIQEDWEAVWDQLDD----LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLT 133 (172)
T ss_pred CCcCcHHHHHHHHHHhh----CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeE
Confidence 67889999999988753 368999999999876532 21 2345677888888899999986554455666666665
Q ss_pred -Ccc-cccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 161 -GGS-SYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 161 -~~~-~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
.+. |.|+.. |...+++ .--+++..+.++|....
T Consensus 134 ~~~~~f~gl~l---D~~nq~~-~t~~ri~~W~~~~~~~~ 168 (172)
T PRK12359 134 ADGQLFVGLAL---DEVNQYD-LSDERIQQWCEQILLEM 168 (172)
T ss_pred cCCCEEEEEEE---cCCCchh-hhHHHHHHHHHHHHHHH
Confidence 344 777633 2222232 23466666666665433
No 20
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.86 E-value=5.2e-21 Score=156.59 Aligned_cols=141 Identities=24% Similarity=0.364 Sum_probs=119.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||.|+|.|++|||+.+|++|++++.+ .|++|+++++.+. +.+ ++.+.+.+|++|++||||++
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~-~gv~v~~~~~~~~----------------~~~-eI~~~i~~a~~~vvGsPT~~ 309 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMK-EGVDVEVINLEDA----------------DPS-EIVEEILDAKGLVVGSPTIN 309 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhh-cCCceEEEEcccC----------------CHH-HHHHHHhhcceEEEecCccc
Confidence 69999999999999999999999999 9999999999874 233 36788999999999999999
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcc
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGS 163 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~ 163 (202)
+++++.+..++-.+.. ...++|.+++|+++||. |+ +...+.+.|+..|+.+...+..+
T Consensus 310 ~~~~p~i~~~l~~v~~----~~~~~k~~~vfgS~GW~-g~---av~~i~~~l~~~g~~~~~~~i~v-------------- 367 (388)
T COG0426 310 GGAHPPIQTALGYVLA----LAPKNKLAGVFGSYGWS-GE---AVDLIEEKLKDLGFEFGFDGIEV-------------- 367 (388)
T ss_pred CCCCchHHHHHHHHHh----ccCcCceEEEEeccCCC-Cc---chHHHHHHHHhcCcEEeccceEE--------------
Confidence 9999999999998854 35688999999999994 43 35566777888888877543321
Q ss_pred cccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 164 SYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 164 ~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
+.+|+++++++|+++|++|++
T Consensus 368 -----------k~~P~~~~l~~c~e~g~~la~ 388 (388)
T COG0426 368 -----------KFRPTEEDLKKCEEAGRDLAQ 388 (388)
T ss_pred -----------EecCCHHHHHHHHHHHHHhcC
Confidence 257999999999999999974
No 21
>PRK00170 azoreductase; Reviewed
Probab=99.86 E-value=5.4e-21 Score=146.77 Aligned_cols=141 Identities=16% Similarity=0.098 Sum_probs=99.8
Q ss_pred CCceEEEEEecC--C-ChHHHHHHHHHHHhhccC--CceEEEEEccCC-CcH---HHHhh-cCCC---CC-----CCCCC
Q 028917 1 MATKIYIVYYSL--Y-GHVETMAREVQRGANSVL--GVEATLWQVPET-LSS---VILQK-MKAP---PK-----TNDVP 62 (202)
Q Consensus 1 M~~kiliiy~S~--~-G~T~~la~~i~~~~~~~~--g~~v~~~~l~~~-~~~---~~~~~-~~~~---~~-----~~~~~ 62 (202)
|| ||++|++|+ + |+|.++++.+.+++++ . |.+|+++||.+. .|. +++.+ ..+. .. .+++.
T Consensus 1 Mm-kil~i~gSpr~~~s~s~~l~~~~~~~l~~-~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 78 (201)
T PRK00170 1 MS-KVLVIKSSILGDYSQSMQLGDAFIEAYKE-AHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSD 78 (201)
T ss_pred CC-eEEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 65 999999998 4 8999999999999998 6 889999999874 342 11111 1111 00 02333
Q ss_pred cCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhh------h---hccCCCCceEEEEecCCCCCC--hHHHHHHH
Q 028917 63 VIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW------A---SQALAGKPAGIFWSTGFHGGG--QELTALTA 131 (202)
Q Consensus 63 ~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~------~---~~~l~gK~~~~~~t~g~~~g~--~~~~l~~~ 131 (202)
.+.++|.+||+|||+||+||+++|+.||+|||++.... . .+.++||++.+++++|+..++ .+.....+
T Consensus 79 -~l~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~ 157 (201)
T PRK00170 79 -ELLEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYL 157 (201)
T ss_pred -HHHHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHH
Confidence 25788999999999999999999999999999985321 0 135789999999987754221 13345555
Q ss_pred HHHHHHcCcEEec
Q 028917 132 VTQLAHHGMLFVP 144 (202)
Q Consensus 132 ~~~l~~~g~~vv~ 144 (202)
...+...|+..++
T Consensus 158 ~~~~~~~G~~~~~ 170 (201)
T PRK00170 158 KTFLGFIGITDVE 170 (201)
T ss_pred HHHHHhcCCCceE
Confidence 5666667776553
No 22
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.84 E-value=9.8e-20 Score=135.91 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=93.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR- 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y- 82 (202)
||+|+|+|.+|||+++|+.|++.+.+ .+++++++.+. ...++.++|.||||+|||
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~---~~~~i~~~~~~---------------------~~~~l~~~d~ii~gspty~ 56 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE---DDVDVFNIAKA---------------------SKEDLNAYDKLILGTPTWG 56 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC---CceEEEEcccC---------------------CHhHHhhCCEEEEEecCCC
Confidence 68999999999999999999999964 35788887652 245788999999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GG-GQELTALTAVTQLAHHGMLFVPLGYT 148 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~g-~~~~~l~~~~~~l~~~g~~vv~~~~~ 148 (202)
+|.+|..++.|++.+.. ..++||++++|++++.. .+ ....++..+.+.|..+|+.+++....
T Consensus 57 ~g~~p~~~~~fl~~l~~----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~ 120 (167)
T TIGR01752 57 VGELQEDWEDFLPTLEE----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPT 120 (167)
T ss_pred CCcCcHHHHHHHHHhhc----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecC
Confidence 67899899999998742 36789999999987542 11 22356778888899999999985443
No 23
>PRK01355 azoreductase; Reviewed
Probab=99.84 E-value=4.1e-20 Score=141.72 Aligned_cols=142 Identities=18% Similarity=0.105 Sum_probs=100.9
Q ss_pred CCceEEEEEecCC----ChHHHHHHHHHHHhhcc-CCceEEEEEccCC-CcHHH--HhhcCCCCCCCCCCcCChhhhccC
Q 028917 1 MATKIYIVYYSLY----GHVETMAREVQRGANSV-LGVEATLWQVPET-LSSVI--LQKMKAPPKTNDVPVIRPHQLKEA 72 (202)
Q Consensus 1 M~~kiliiy~S~~----G~T~~la~~i~~~~~~~-~g~~v~~~~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~l~~a 72 (202)
|| ||++|++|+. |+|.++++.+++++++. .+.+++++||.+. .|..+ .....|...++++. ...+++.+|
T Consensus 1 M~-kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~A 78 (199)
T PRK01355 1 MS-KVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSD-KYINQLKSV 78 (199)
T ss_pred CC-eEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHH-HHHHHHHhC
Confidence 55 9999999984 78999999999999872 3589999999875 33211 11112222223443 367899999
Q ss_pred CeeEEeccccCCcchHHHHHHHHhhhhh---h-----h----hccCCCCceEEEEecCCCCCCh--HHHHHHHHHHHHHc
Q 028917 73 DGFLFGFPSRFGVMAAQCKAFFDATYEL---W-----A----SQALAGKPAGIFWSTGFHGGGQ--ELTALTAVTQLAHH 138 (202)
Q Consensus 73 d~ii~gsP~y~g~~~~~~k~fld~~~~~---~-----~----~~~l~gK~~~~~~t~g~~~g~~--~~~l~~~~~~l~~~ 138 (202)
|+|||+||+||+++|+.||+|||++... + . .+.++||++.+++|+|.+.+.. +.....+...+...
T Consensus 79 D~iV~~sP~y~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~ 158 (199)
T PRK01355 79 DKVVISCPMTNFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFL 158 (199)
T ss_pred CEEEEEcCccccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhc
Confidence 9999999999999999999999998532 1 0 1247899999999988643221 23445566666777
Q ss_pred CcEEec
Q 028917 139 GMLFVP 144 (202)
Q Consensus 139 g~~vv~ 144 (202)
|+..+.
T Consensus 159 G~~~~~ 164 (199)
T PRK01355 159 GAKVVD 164 (199)
T ss_pred CCCcee
Confidence 776553
No 24
>PRK09271 flavodoxin; Provisional
Probab=99.83 E-value=2.4e-19 Score=132.88 Aligned_cols=143 Identities=16% Similarity=0.139 Sum_probs=103.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||+|+|+|++|||+++|+.|++++++ .|++++++++.+. ++. ....++.++|+||||||||+
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~~~~~~~~----------------~~~-~~~~~~~~~d~vilgt~T~~ 63 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEE-AGHEVDWVETDVQ----------------TLA-EYPLDPEDYDLYLLGTWTDN 63 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHh-CCCeeEEEecccc----------------ccc-ccccCcccCCEEEEECcccC
Confidence 89999999999999999999999998 8999998887652 111 12456789999999999997
Q ss_pred -CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCC--hHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 84 -GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGG--QELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 84 -g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~--~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
|.+|..++.|++.+.. ...++|++++|++++...++ ...+...+...|... ...+.
T Consensus 64 ~G~~p~~~~~f~~~l~~----~~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~------------ 122 (160)
T PRK09271 64 AGRTPPEMKRFIAELAE----TIGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLK------------ 122 (160)
T ss_pred CCcCCHHHHHHHHHHHH----HhccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCcee------------
Confidence 4557789999999853 23478999999997432222 124455555555421 01111
Q ss_pred CcccccceeecCCCCCCCCH-HHHHHHHHHhHHHHHHHH
Q 028917 161 GGSSYGAGTFAADGSRQPTD-LELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e-~~~~~a~~~g~~l~~~~~ 198 (202)
.+..|++ .|+++++++++++++.++
T Consensus 123 -------------~~~~p~~~~d~~~~~~~~~~~~~~~~ 148 (160)
T PRK09271 123 -------------IEQMPHGERDAAAIDNWTDKVLALCK 148 (160)
T ss_pred -------------eecCCccchhHHHHHHHHHHHHHHhh
Confidence 0134554 578999999999998763
No 25
>PRK09739 hypothetical protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=141.57 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=86.7
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc--------CCCCCCCCCCcCChhhhccC
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKM--------KAPPKTNDVPVIRPHQLKEA 72 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~a 72 (202)
|||++|++|+ .|+|.++++.+++++++ .|.+++++||.+.....|..+. .|... +++. ...+++.+|
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~~A 80 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQE-RGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYS-PEVH-QLYSELLEH 80 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHH-CCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCC-HHHH-HHHHHHHhC
Confidence 4999999998 58899999999999998 8899999999874211122111 12222 2332 357899999
Q ss_pred CeeEEeccccCCcchHHHHHHHHhhhhh-hh---hccCCCCceEEEEecCCC
Q 028917 73 DGFLFGFPSRFGVMAAQCKAFFDATYEL-WA---SQALAGKPAGIFWSTGFH 120 (202)
Q Consensus 73 d~ii~gsP~y~g~~~~~~k~fld~~~~~-~~---~~~l~gK~~~~~~t~g~~ 120 (202)
|.|||++|+||+++|+.+|.|||++... +. ...|.+|++.++.++|+.
T Consensus 81 D~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~ 132 (199)
T PRK09739 81 DALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGS 132 (199)
T ss_pred CEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCC
Confidence 9999999999999999999999998421 11 134788998888877654
No 26
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=99.81 E-value=1.6e-18 Score=133.54 Aligned_cols=172 Identities=15% Similarity=0.117 Sum_probs=124.7
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCC-CcHHHHhhcCCCCCCCCCCc--CChhhhccCCeeEE
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPET-LSSVILQKMKAPPKTNDVPV--IRPHQLKEADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ad~ii~ 77 (202)
+||++|.+|. ..++.++++.+++.+.+ .|++++++++.+. +++... ++.+. ...+.+.++|++||
T Consensus 27 ~kI~~I~GSlR~~S~n~~la~~~~~~~~~-~g~~v~~idl~~lPl~~~d~---------~~~p~v~~l~~~v~~ADgvii 96 (219)
T TIGR02690 27 PRILLLYGSLRERSYSRLLAEEAARLLGC-EGRETRIFDPPGLPLPDAAH---------ADHPKVRELRQLSEWSEGQVW 96 (219)
T ss_pred CEEEEEECCCCCcchHHHHHHHHHHHHhh-cCCEEEEeCcccCCCCCcCc---------ccCHHHHHHHHHHHhCCEEEE
Confidence 4899999997 46889999999999998 7999999999763 111000 11111 14578899999999
Q ss_pred eccccCCcchHHHHHHHHhhhhhhh-hccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccc
Q 028917 78 GFPSRFGVMAAQCKAFFDATYELWA-SQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEM 156 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~~~~~-~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~ 156 (202)
+||.|++++|+.+|++||++.+.|. ...|.||++++++++|+. + ...++..++..+...++.+++....+..
T Consensus 97 ~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~-~-g~ra~~~LR~vl~~l~a~v~p~~v~i~~----- 169 (219)
T TIGR02690 97 CSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGS-Q-SFNAVNILRRLGRWMRMPTIPNQSSVAK----- 169 (219)
T ss_pred eCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcH-h-HHHHHHHHHHHHHHCCCccccchhhhhh-----
Confidence 9999999999999999999976432 125899999998776542 2 3456888888999999999886443210
Q ss_pred ccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 157 NEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
. ...|+.+|. ..+++..+...++.+++.+.++..+
T Consensus 170 -------a--~~~fd~~G~-l~d~~~~~~l~~~l~~~~~~~~~~~ 204 (219)
T TIGR02690 170 -------A--FDEFDEAGR-MKPSDYYDRVVDVMEELTKFTLLTR 204 (219)
T ss_pred -------h--HhhcCcCCC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 011333343 4667778888888888888776543
No 27
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.80 E-value=1.9e-18 Score=125.35 Aligned_cols=106 Identities=19% Similarity=0.143 Sum_probs=81.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEE-EEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEAT-LWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
|++|+|+|.+|||+++|+.|++.++. .|++++ ++++.+. . ....++.++|.||||||+|
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~-~g~~v~~~~~~~~~------------------~-~~~~~~~~~d~iilgs~t~ 61 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQK-DGHEVDILHRIGTL------------------A-DAPLDPENYDLVFLGTWTW 61 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhh-CCeeEEeccccccc------------------c-cCcCChhhCCEEEEEcCee
Confidence 89999999999999999999999998 888877 4555431 0 1234577899999999998
Q ss_pred -CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCC--hHHHHHHHHHHHH
Q 028917 83 -FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGG--QELTALTAVTQLA 136 (202)
Q Consensus 83 -~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~--~~~~l~~~~~~l~ 136 (202)
+|.+|..++.|++.+. .++|++++|+++++..++ .-.+.+.+...|.
T Consensus 62 ~~g~~p~~~~~fl~~l~-------~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 62 ERGRTPDEMKDFIAELG-------YKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred CCCcCCHHHHHHHHHhc-------ccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 5778889999999882 378999999998542222 2246666766664
No 28
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=99.79 E-value=8.1e-19 Score=129.17 Aligned_cols=117 Identities=20% Similarity=0.346 Sum_probs=71.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC--CCcH---HH---HhhcCCCC-CCCCCCcC--ChhhhccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE--TLSS---VI---LQKMKAPP-KTNDVPVI--RPHQLKEA 72 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~--~~~~---~~---~~~~~~~~-~~~~~~~~--~~~~l~~a 72 (202)
|+||||+|.+|||+++|+.|++.+.. +++.+.. .+|. .. ........ .....|+. ...++.+|
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~ga------di~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~Y 74 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGA------DIFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDY 74 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-------EEEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCC------CEEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccC
Confidence 78999999999999999999988743 4555543 2333 10 00000000 00111211 34589999
Q ss_pred CeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHH
Q 028917 73 DGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQL 135 (202)
Q Consensus 73 d~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l 135 (202)
|.|++|+|+|||++|+++.+||++. +++||.++.|+|+|+. +...++..+.+.+
T Consensus 75 D~I~lG~PvW~~~~~~pv~tFL~~~-------~~~gK~v~~F~T~ggs--~~~~~~~~l~~~~ 128 (156)
T PF12682_consen 75 DTIFLGTPVWWGTPPPPVRTFLEQY-------DFSGKTVIPFCTSGGS--GFGNSLEDLKKLC 128 (156)
T ss_dssp SEEEEEEEEETTEE-CHHHHHHHCT-------TTTTSEEEEEEE-SS----CHHHHHHHHHH-
T ss_pred CEEEEechHHcCCCCHHHHHHHHhc-------CCCCCcEEEEEeeCCC--ChhHHHHHHHHHC
Confidence 9999999999999999999999986 6899999999998762 3345666666554
No 29
>PRK07116 flavodoxin; Provisional
Probab=99.78 E-value=1.7e-18 Score=128.37 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=78.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHH---Hhh---cCCCCCC-CCCCc--CChhhhcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVI---LQK---MKAPPKT-NDVPV--IRPHQLKE 71 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~---~~~---~~~~~~~-~~~~~--~~~~~l~~ 71 (202)
|| |++|+|+|.+|||+++|+.|++.+.. .. +++..... +|... ... ..+...+ ...+. ....++.+
T Consensus 2 m~-k~lIvY~S~tGnT~~iA~~Ia~~l~~-d~--~~i~~~~~-y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 76 (160)
T PRK07116 2 NN-KTLVAYFSATGTTKKVAEKLAEVTGA-DL--FEIKPEQP-YTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAE 76 (160)
T ss_pred CC-cEEEEEECCCCcHHHHHHHHHHHhcC-Ce--EEEeeCCC-CCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHh
Confidence 44 99999999999999999999999964 22 12222221 11100 000 0000000 00010 01357899
Q ss_pred CCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHH
Q 028917 72 ADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQL 135 (202)
Q Consensus 72 ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l 135 (202)
+|.||||+|+|++++|+.++.|++++ .+.||++++|+|+|+...+ .+...+.+.+
T Consensus 77 ~D~Iiig~Pv~~~~~p~~v~~fl~~~-------~l~~k~v~~f~T~g~~~~g--~~~~~~~~~~ 131 (160)
T PRK07116 77 YDVIFLGFPIWWYVAPRIINTFLESY-------DFSGKTVIPFATSGGSGIG--NAEKELKKSY 131 (160)
T ss_pred CCEEEEECChhccccHHHHHHHHHhc-------CCCCCEEEEEEeCCCCCcC--cHHHHHHHHC
Confidence 99999999999999999999999976 5789999999998764322 3345554443
No 30
>PRK13556 azoreductase; Provisional
Probab=99.78 E-value=1.1e-17 Score=129.16 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=99.4
Q ss_pred CCceEEEEEecCC----ChHHHHHHHHHHHhhcc-CCceEEEEEccCC-CcH-HH--Hhh-----cCCCCCC------CC
Q 028917 1 MATKIYIVYYSLY----GHVETMAREVQRGANSV-LGVEATLWQVPET-LSS-VI--LQK-----MKAPPKT------ND 60 (202)
Q Consensus 1 M~~kiliiy~S~~----G~T~~la~~i~~~~~~~-~g~~v~~~~l~~~-~~~-~~--~~~-----~~~~~~~------~~ 60 (202)
|| |||+|++|+. ++|.++++.+++.+++. .|.+|+++||.+. +|. .+ ... ..|...+ ++
T Consensus 1 m~-kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (208)
T PRK13556 1 MS-KVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAV 79 (208)
T ss_pred CC-eEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHH
Confidence 54 9999999984 68999999999999872 2789999999863 442 11 111 1132110 11
Q ss_pred CCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhh-----h----hccCCCCceEEEEecCCCCC-----ChHH
Q 028917 61 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW-----A----SQALAGKPAGIFWSTGFHGG-----GQEL 126 (202)
Q Consensus 61 ~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~-----~----~~~l~gK~~~~~~t~g~~~g-----~~~~ 126 (202)
.. ...+.+.+||.|||++|.||+++|+.||+|||++...- . .+.+++|++.+++++|+... +.+.
T Consensus 80 ~~-~~~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~ 158 (208)
T PRK13556 80 AD-KYLNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEM 158 (208)
T ss_pred HH-HHHHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhc
Confidence 11 24688999999999999999999999999999997531 1 12478999999998876431 1122
Q ss_pred HHHHHHHHHHHcCcEEec
Q 028917 127 TALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 127 ~l~~~~~~l~~~g~~vv~ 144 (202)
....+...+...|+..++
T Consensus 159 ~~~~l~~il~~~G~~~~~ 176 (208)
T PRK13556 159 AVKYVASMMGFFGVTNME 176 (208)
T ss_pred cHHHHHHHHHhcCCCcee
Confidence 344566677777776654
No 31
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.76 E-value=4.4e-18 Score=128.00 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=77.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
|++|+|+|.+|||+++|+.|++.++. |++++++++.+. ...++.+||.||||+|+|+
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~--g~~v~~~~~~~~---------------------~~~~l~~yD~vIlGspi~~ 58 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE--GIQCDVVNLHRI---------------------EEPDLSDYDRVVIGASIRY 58 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC--CCeEEEEEhhhc---------------------CccCHHHCCEEEEECcccc
Confidence 89999999999999999999999984 888999988752 2346889999999999999
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecC
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTG 118 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g 118 (202)
|.+++.++.|+++.. ..|++|++++|+++.
T Consensus 59 G~~~~~~~~fl~~~~-----~~l~~K~v~~F~v~l 88 (177)
T PRK11104 59 GHFHSALYKFVKKHA-----TQLNQMPSAFFSVNL 88 (177)
T ss_pred CCcCHHHHHHHHHHH-----HHhCCCeEEEEEech
Confidence 999999999999874 378999999999874
No 32
>PRK06934 flavodoxin; Provisional
Probab=99.76 E-value=4.1e-18 Score=131.07 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=81.7
Q ss_pred ceEEEEEecCC------------------------ChHHHHHHHHHHHhhccCCceEEEEEccCCCcH---HHHhhcCCC
Q 028917 3 TKIYIVYYSLY------------------------GHVETMAREVQRGANSVLGVEATLWQVPETLSS---VILQKMKAP 55 (202)
Q Consensus 3 ~kiliiy~S~~------------------------G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~---~~~~~~~~~ 55 (202)
.||||+|+|.. |||+++|+.|++.+.. ++.-+...+.+|. .+.......
T Consensus 36 ~k~Lv~yfs~~~~~~~~~~~~~~~~s~~~~~~~~~GnTk~vAe~Ia~~~ga----Dl~eI~~~~~Y~~~yd~~~~~a~~E 111 (221)
T PRK06934 36 RRVLIVYFSQPEDVKLEGVDGVSGASILQKNGEVLGSTQYVAQIIQEETGG----DLFRIETVKPYPRQHDPLLKYAEQE 111 (221)
T ss_pred CceEEEEEeccCCcccccccccccccccccCCCCCCHHHHHHHHHHHHHCC----CEEEEEEccccCCCCchhhhHHHHh
Confidence 48999999976 8999999999998753 3332333332222 111111001
Q ss_pred CCCCCCCcC--ChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHH
Q 028917 56 PKTNDVPVI--RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVT 133 (202)
Q Consensus 56 ~~~~~~~~~--~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~ 133 (202)
.+.+..|+. ...++.+||.|+||+|+|||.+|+.++.||++. ++.||.++.|+|+|+. +...++..+.+
T Consensus 112 ~~~~~~P~L~~~~~dl~~YD~I~IG~PIWwg~~P~~V~tFLe~~-------d~~GK~I~pF~T~ggs--g~g~s~~~i~~ 182 (221)
T PRK06934 112 VKEGGRPEMREKIQNLADYDQIFIGYPIWWYKMPMVMYSFFEQH-------DFSGKTLIPFTTHGGS--RFSDSLREIKR 182 (221)
T ss_pred hhcCCCHHHHHHHHhHHhCCEEEEEcchhhccccHHHHHHHHhc-------CCCCCEEEEEEecCCC--CccchHHHHHH
Confidence 010111211 257899999999999999999999999999987 7899999999998753 33445666655
Q ss_pred HH
Q 028917 134 QL 135 (202)
Q Consensus 134 ~l 135 (202)
.+
T Consensus 183 l~ 184 (221)
T PRK06934 183 LQ 184 (221)
T ss_pred Hc
Confidence 43
No 33
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=99.75 E-value=1.3e-17 Score=122.83 Aligned_cols=146 Identities=21% Similarity=0.258 Sum_probs=95.6
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCc
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGV 85 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~ 85 (202)
+|+|+|.+|||++||++|++.+.. .+++++.+. ...+.+||.|++|+++|.|+
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~-----~~~~~~~~~----------------------~~~~~~yD~i~lG~w~d~G~ 53 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA-----KDIVSVEEP----------------------PEDLEDYDLIFLGFWIDKGT 53 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-----ceeEecccc----------------------ccCCCCCCEEEEEcCccCCC
Confidence 589999999999999999999963 466666541 12288999999999999999
Q ss_pred chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChH---HHHHHHHHHHHHcCcEEecCCCcCCCCcccc------
Q 028917 86 MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQE---LTALTAVTQLAHHGMLFVPLGYTFGSGMFEM------ 156 (202)
Q Consensus 86 ~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~---~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~------ 156 (202)
++..++.||.++ +||++++|+|+|... ..+ ..+..+...+ ..+..+++.-. |.+..+.
T Consensus 54 ~d~~~~~fl~~l---------~~KkV~lF~T~G~~~-~s~~~~~~~~~~~~~~-~~~~~~lg~f~--CqGk~~~~~~e~~ 120 (160)
T PF12641_consen 54 PDKDMKEFLKKL---------KGKKVALFGTAGAGP-DSEYAKKILKNVEALL-PKGNEILGTFM--CQGKMDPKVIEKY 120 (160)
T ss_pred CCHHHHHHHHHc---------cCCeEEEEEecCCCC-chHHHHHHHHHHHHhh-ccCCeecceEE--eCCcCCHHHHHHH
Confidence 999999999865 789999999998632 222 2333333333 34566665322 3322111
Q ss_pred ccc-cCccccccee--ecC--CCCCCCCHHHHHHHHHHhH
Q 028917 157 NEV-KGGSSYGAGT--FAA--DGSRQPTDLELQQAFHQGK 191 (202)
Q Consensus 157 ~~~-~~~~~~g~~~--~~~--~~~~~p~e~~~~~a~~~g~ 191 (202)
... .......... .+. .+..+||++|++.|+++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~a~~HPde~Dl~~a~~~~k 160 (160)
T PF12641_consen 121 KKMLPKNPPHAMTPERLARFDEAASHPDEEDLQNAKAFFK 160 (160)
T ss_pred HhccCCCCCCcccHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 000 1111111000 000 1347999999999998864
No 34
>PRK09004 FMN-binding protein MioC; Provisional
Probab=99.74 E-value=1e-16 Score=116.92 Aligned_cols=118 Identities=15% Similarity=0.074 Sum_probs=96.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|. ||+|+|+|.+|||+.+|+.+++.+.+ .|.++++++..+ .+++.++|.+||++|
T Consensus 1 M~-~i~I~ygS~tGnae~~A~~l~~~~~~-~g~~~~~~~~~~-----------------------~~~l~~~~~li~~~s 55 (146)
T PRK09004 1 MA-DITLISGSTLGGAEYVADHLAEKLEE-AGFSTETLHGPL-----------------------LDDLSASGLWLIVTS 55 (146)
T ss_pred CC-eEEEEEEcCchHHHHHHHHHHHHHHH-cCCceEEeccCC-----------------------HHHhccCCeEEEEEC
Confidence 54 89999999999999999999999998 899888866432 356778999999999
Q ss_pred cc-CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 81 SR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 81 ~y-~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
|| .|.+|...+.|++.+... ...|+|+++++|+.+.+.....-.+...+.+.|...|...+..
T Consensus 56 T~G~Ge~p~~~~~f~~~L~~~--~~~l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 119 (146)
T PRK09004 56 THGAGDLPDNLQPFFEELQEQ--KPDLSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGE 119 (146)
T ss_pred CCCCCCCChhHHHHHHHHHhc--CCCCCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeec
Confidence 99 799999999999988531 2368999999999887643222345677788888899988853
No 35
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.74 E-value=1.6e-16 Score=116.73 Aligned_cols=148 Identities=22% Similarity=0.186 Sum_probs=105.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||+|+|+|.+|||+.+|+.|++.+.+ .|+++++..... .....+.++|.+++|+|
T Consensus 1 M~-ki~Ivy~S~tGnTe~vA~~i~~~l~~-~~~~~~~~~~~~---------------------~~~~~~~~~d~~~~g~~ 57 (151)
T COG0716 1 MM-KILIVYGSRTGNTEKVAEIIAEELGA-DGFEVDIDIRPG---------------------IKDDLLESYDELLLGTP 57 (151)
T ss_pred CC-eEEEEEEcCCCcHHHHHHHHHHHhcc-CCceEEEeecCC---------------------cchhhhccCCEEEEEeC
Confidence 55 99999999999999999999999999 888874433322 11223469999999999
Q ss_pred ccC-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCC-hHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccc
Q 028917 81 SRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGG-QELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNE 158 (202)
Q Consensus 81 ~y~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~-~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~ 158 (202)
+|. |..|..+..|++.+.. ..+++|++++|+++.+.... .-.+...+...+...|....+..-.
T Consensus 58 t~~~ge~~~~~~~f~~~~~~----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~---------- 123 (151)
T COG0716 58 TWGAGELPDDWYDFIEELEP----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILET---------- 123 (151)
T ss_pred CCCCCcCCccHHHHHHHhcc----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccc----------
Confidence 996 6666689999999853 36899999999995443222 2344666777777777533321111
Q ss_pred ccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHH
Q 028917 159 VKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
.+ + .....|++++.++++++++++...
T Consensus 124 ------~~---~--~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 124 ------LG---Y--IFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred ------cc---e--eccCCCCCccHHHHHHHHHHHHhh
Confidence 00 0 001358889999999999998753
No 36
>PRK13555 azoreductase; Provisional
Probab=99.72 E-value=4.6e-16 Score=119.69 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=94.6
Q ss_pred CCceEEEEEecCC----ChHHHHHHHHHHHhhccCC--ceEEEEEccCC-CcH---HHHhhcCCCCC----CCC------
Q 028917 1 MATKIYIVYYSLY----GHVETMAREVQRGANSVLG--VEATLWQVPET-LSS---VILQKMKAPPK----TND------ 60 (202)
Q Consensus 1 M~~kiliiy~S~~----G~T~~la~~i~~~~~~~~g--~~v~~~~l~~~-~~~---~~~~~~~~~~~----~~~------ 60 (202)
|+ |||+|++|+. +.|.++++.+.+++++ .+ .+|+.+||.+. .|. ..+.....+.. ..+
T Consensus 1 M~-kiL~I~asp~~~~~S~s~~la~~f~~~~~~-~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 78 (208)
T PRK13555 1 MS-KVLFVKANDRPAEQAVSSKMYETFVSTYKE-ANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVA 78 (208)
T ss_pred CC-eEEEEeCCCCCCCCcHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHH
Confidence 55 9999999974 5799999999999998 54 79999999875 331 11111111100 000
Q ss_pred CCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhh-h--------hhccCCCCceEEEEecCCCCCCh-----HH
Q 028917 61 VPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-W--------ASQALAGKPAGIFWSTGFHGGGQ-----EL 126 (202)
Q Consensus 61 ~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~-~--------~~~~l~gK~~~~~~t~g~~~g~~-----~~ 126 (202)
......+.+.+||.|||++|.||+++|+.+|.|||++... + ..+.++||++.+++++|+...+. ..
T Consensus 79 ~~~~~~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~ 158 (208)
T PRK13555 79 TVDQYLNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEM 158 (208)
T ss_pred HHHHHHHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhh
Confidence 0002467899999999999999999999999999998642 1 01357899999999977643321 22
Q ss_pred HHHHHHHHHHHcCcE
Q 028917 127 TALTAVTQLAHHGML 141 (202)
Q Consensus 127 ~l~~~~~~l~~~g~~ 141 (202)
....+...|...|+.
T Consensus 159 ~~~yl~~il~~~Gi~ 173 (208)
T PRK13555 159 AVNYVTTVLGFWGIT 173 (208)
T ss_pred HHHHHHHHHHhcCCC
Confidence 234555556555553
No 37
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=99.72 E-value=1.3e-16 Score=122.28 Aligned_cols=139 Identities=24% Similarity=0.259 Sum_probs=97.9
Q ss_pred ceEEEEEecCC---ChHHHHHHHHHHHhhccCC-ceEEEEEccCC-Cc---HHHHhh---cCCCCCCCCCCcCC-hhhhc
Q 028917 3 TKIYIVYYSLY---GHVETMAREVQRGANSVLG-VEATLWQVPET-LS---SVILQK---MKAPPKTNDVPVIR-PHQLK 70 (202)
Q Consensus 3 ~kiliiy~S~~---G~T~~la~~i~~~~~~~~g-~~v~~~~l~~~-~~---~~~~~~---~~~~~~~~~~~~~~-~~~l~ 70 (202)
||||||++||. ++|.++++.+.+++++ .| .+++++||.+. .| ..++.+ ..+... .+.. .. .+.+.
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~-~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~-~d~~-~~~~~~l~ 77 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQE-AGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPA-IDVQ-SEQIEELL 77 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHH-HTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHH-HHHH-HHHHHHHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHH-cCCCEEEEEECcccccccchHHHHHhhhhhhhhhh-hhHH-HHHHHHHH
Confidence 49999999995 4699999999999999 88 89999999885 22 122221 100000 0111 12 38899
Q ss_pred cCCeeEEeccccCCcchHHHHHHHHhhhhh-h----------hhccCCCCceEEEEecCCCC---C-------ChHHHHH
Q 028917 71 EADGFLFGFPSRFGVMAAQCKAFFDATYEL-W----------ASQALAGKPAGIFWSTGFHG---G-------GQELTAL 129 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~~k~fld~~~~~-~----------~~~~l~gK~~~~~~t~g~~~---g-------~~~~~l~ 129 (202)
+||.|||++|+||+++|+.||.|+|++... + ....|+||++.+++|+|++. + ..+..+.
T Consensus 78 ~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~ 157 (199)
T PF02525_consen 78 WADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLP 157 (199)
T ss_dssp HSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHH
T ss_pred HcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHH
Confidence 999999999999999999999999998431 1 12478999999999988751 1 1244556
Q ss_pred HHHHHHHHcCcEEec
Q 028917 130 TAVTQLAHHGMLFVP 144 (202)
Q Consensus 130 ~~~~~l~~~g~~vv~ 144 (202)
.+...+...|+..+.
T Consensus 158 ~~~~~~~~~G~~~~~ 172 (199)
T PF02525_consen 158 YLRGILKFCGIKDVE 172 (199)
T ss_dssp HHHHHHHHTTEEEEE
T ss_pred HHHHHHHhCCCceee
Confidence 677778888998885
No 38
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.70 E-value=9.8e-17 Score=116.78 Aligned_cols=87 Identities=22% Similarity=0.359 Sum_probs=72.4
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCc
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGV 85 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~ 85 (202)
||+|.|.+|||+++|+.|++.+.+ .+ ..+++.+. . ....++.++|.||||+|+|.|.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~-~~---~~v~~~~~------------------~-~~~~~~~~yD~vi~gspiy~g~ 57 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGE-EG---ELVDLEKV------------------E-EDEPDLSDYDAVIFGSPIYAGR 57 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhh-hc---cEEEHHhh------------------h-hcccccccCCEEEEEEEEECCc
Confidence 689999999999999999999987 44 44444431 0 1245789999999999999999
Q ss_pred chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCC
Q 028917 86 MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH 120 (202)
Q Consensus 86 ~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~ 120 (202)
+++.++.|+++.. ..|++|++++|+++++.
T Consensus 58 ~~~~~~~fi~~~~-----~~l~~k~v~~f~~~~~~ 87 (143)
T PF12724_consen 58 IPGEMREFIKKNK-----DNLKNKKVALFSVGGSS 87 (143)
T ss_pred CCHHHHHHHHHHH-----HHHcCCcEEEEEEeCCC
Confidence 9999999999874 36899999999998874
No 39
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.68 E-value=7.6e-16 Score=111.93 Aligned_cols=119 Identities=29% Similarity=0.335 Sum_probs=92.4
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC-Cc
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF-GV 85 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~-g~ 85 (202)
|+|+|++|||+++|+.|++++++ .|++++++++.+... ...++.+++.+||++|||+ |.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~-~g~~~~~~~~~~~~~-------------------~~~~~~~~~~~i~~~sT~~~g~ 60 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRE-RGVEVRVVDLDDFDD-------------------SPSDLSEYDLLIFGVSTYGEGE 60 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHH-TTSEEEEEEGGGSCH-------------------HHHHHCTTSEEEEEEEEETTTE
T ss_pred CEEECCchhHHHHHHHHHHHHHH-cCCceeeechhhhhh-------------------hhhhhhhhceeeEeecccCCCc
Confidence 79999999999999999999999 899999999987310 0458899999999999997 55
Q ss_pred chHHHHHHHHhhhhhh----hhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 86 MAAQCKAFFDATYELW----ASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 86 ~~~~~k~fld~~~~~~----~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
+|..++.|+..+...+ ....++++.+++|+.+++..++.-.+...+.+.|...|+.++..
T Consensus 61 ~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~ 124 (143)
T PF00258_consen 61 PPDNAKEFFEELLELKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGP 124 (143)
T ss_dssp ESGGGHHHHHHHHHHHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESS
T ss_pred chhhhhhhhhhccccccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEEC
Confidence 6756554554443332 12468999999998877644432356778888999999999864
No 40
>PRK08105 flavodoxin; Provisional
Probab=99.68 E-value=3e-15 Score=109.56 Aligned_cols=120 Identities=19% Similarity=0.111 Sum_probs=94.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|. ||+|+|+|.+|||+.+|+.|++.+.+ .|+++.+.++.+. ......+++.+||++|
T Consensus 1 m~-~i~I~YgS~tGnte~~A~~l~~~l~~-~g~~~~~~~~~~~---------------------~~~~~~~~~~vi~~~s 57 (149)
T PRK08105 1 MA-KVGIFVGTVYGNALLVAEEAEAILTA-QGHEVTLFEDPEL---------------------SDWQPYQDELVLVVTS 57 (149)
T ss_pred CC-eEEEEEEcCchHHHHHHHHHHHHHHh-CCCceEEechhhC---------------------CchhcccCCeEEEEEC
Confidence 44 89999999999999999999999998 8999988877542 1112345799999999
Q ss_pred cc-CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 81 SR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 81 ~y-~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
|| .|.+|..++.|++.+... ...|+|+++++|+.+++.....-.+...+.+.|..+|...+..
T Consensus 58 T~G~Ge~p~~~~~f~~~l~~~--~~~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 58 TTGQGDLPDSIVPLFQALKDT--AGYQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred CCCCCCCChhHHHHHHHHHhc--CcccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 99 699999999999998642 1268999999999977543222345677778888889988753
No 41
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=99.67 E-value=9.5e-16 Score=115.30 Aligned_cols=130 Identities=20% Similarity=0.154 Sum_probs=87.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+|+|||++||+......-+.+.+.++ .+.+|++.||....|.. ..|.. ...+.+.+||.|||.+|+|
T Consensus 6 ~kiLiI~aHP~~~~S~~n~~l~~~~~--~~~~v~~~DL~~~~p~~----------~~d~~-~eq~~l~~aD~iV~~fPl~ 72 (184)
T PRK04930 6 PKVLLLYAHPESQDSVANRVLLKPAQ--QLEHVTVHDLYAHYPDF----------FIDIP-HEQALLREHDVIVFQHPLY 72 (184)
T ss_pred CEEEEEECCCCcccCHHHHHHHHHHH--cCCceEEEECcccCCCC----------CCCHH-HHHHHHHhCCEEEEEcCcc
Confidence 59999999997542223333444444 34578999998754410 01222 2467899999999999999
Q ss_pred CCcchHHHHHHHHhhhhh-hh----hccCCCCceEEEEecCCCC-----CCh-----HHHHHHHHHHHHHcCcEEecC
Q 028917 83 FGVMAAQCKAFFDATYEL-WA----SQALAGKPAGIFWSTGFHG-----GGQ-----ELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~-~~----~~~l~gK~~~~~~t~g~~~-----g~~-----~~~l~~~~~~l~~~g~~vv~~ 145 (202)
|+++|+.||.|+|++... |. ...++||++.+++|+|++. +|. +..+..+...+...||.+++.
T Consensus 73 w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~ 150 (184)
T PRK04930 73 TYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSP 150 (184)
T ss_pred ccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCc
Confidence 999999999999998542 22 1358999999998877642 111 123344444556778888763
No 42
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=99.67 E-value=1.8e-15 Score=114.58 Aligned_cols=131 Identities=24% Similarity=0.265 Sum_probs=97.6
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCC-ceEEEEEccCCCcHHHHhhcCCCCCCCCCCc---CChhhhccCCeeE
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLG-VEATLWQVPETLSSVILQKMKAPPKTNDVPV---IRPHQLKEADGFL 76 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ad~ii 76 (202)
+||++|++|. ...|..+++.+++.++. .+ .++..+++....+.+.... ++.+. ...+.+.++|++|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~-~~~~~~~~~~~~lP~~~~d~~~-------~~~p~~v~~~~~~i~~aD~li 72 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPA-GGEVEVEFDDLDLPLYNEDLEA-------DGLPPAVQALREAIAAADGLI 72 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcc-cCceEEEecccccCCCCcchhh-------ccCCHHHHHHHHHHHhCCEEE
Confidence 3899999997 46899999999999998 55 3444444432211111110 01221 2468899999999
Q ss_pred EeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 77 FGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 77 ~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
|+||+|++++|+.+|+.||++.+ ..|.+|++++++++++..++ ..+...++..+...++.+++.+
T Consensus 73 ~~tPeYn~s~pg~lKnaiD~l~~----~~~~~Kpv~~~~~s~g~~~~-~~a~~~Lr~vl~~~~~~~~~~~ 137 (184)
T COG0431 73 IATPEYNGSYPGALKNAIDWLSR----EALGGKPVLLLGTSGGGAGG-LRAQNQLRPVLSFLGARVIPAG 137 (184)
T ss_pred EECCccCCCCCHHHHHHHHhCCH----hHhCCCcEEEEecCCCchhH-HHHHHHHHHHHHhcCceecccc
Confidence 99999999999999999999975 35899999999988775443 4567788888889999999864
No 43
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=99.64 E-value=9e-16 Score=109.95 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=88.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
||+||+|+|.+|+|+++|+.|+..|++ .|.+|++.|++.. ...++.++|.||+|+|+|
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e-~g~qvdi~dl~~~---------------------~~~~l~~ydavVIgAsI~ 58 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRE-SGIQVDIQDLHAV---------------------EEPALEDYDAVVIGASIR 58 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhh-cCCeeeeeehhhh---------------------hccChhhCceEEEecchh
Confidence 389999999999999999999999999 8999999999762 224789999999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCC--hHHHHHHHHHHHHHc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGG--QELTALTAVTQLAHH 138 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~--~~~~l~~~~~~l~~~ 138 (202)
.|.....+++|+.+.. ..|..||.++|++.-...-. ...+-..+.+++...
T Consensus 59 ~~h~~~~~~~Fv~k~~-----e~L~~kP~A~f~vnl~a~k~k~~~e~~~yv~kfl~~~ 111 (175)
T COG4635 59 YGHFHEAVQSFVKKHA-----EALSTKPSAFFSVNLTARKEKRTPETNSYVRKFLMKS 111 (175)
T ss_pred hhhhHHHHHHHHHHHH-----HHHhcCCceEEEeehhhcccccCchHHHHHHHHHhcC
Confidence 9999999999999985 37899999999986432111 112334556666543
No 44
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=99.58 E-value=5.3e-14 Score=105.22 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=85.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFG 84 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g 84 (202)
||||+++|+......-+++.+.+.+ . .+|+++||.+.+|.. +.|.. ...+.+.+||.|||.+|.||+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~-~-~~v~v~dL~~~~p~~----------~~dv~-~eq~~l~~aD~iV~~fP~~w~ 68 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQART-L-EGVEIRSLYQLYPDF----------NIDIA-AEQEALSRADLIVWQHPMQWY 68 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHh-c-CCeEEEEChhhcCCc----------chhHH-HHHHHHHhCCEEEEEcChhhc
Confidence 9999999975433344444444443 2 258899987754421 01222 246789999999999999999
Q ss_pred cchHHHHHHHHhhhh-hhh----hccCCCCceEEEEecCCCC-----CCh---HHHHHHHHHHHHHcCcEEecC
Q 028917 85 VMAAQCKAFFDATYE-LWA----SQALAGKPAGIFWSTGFHG-----GGQ---ELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 85 ~~~~~~k~fld~~~~-~~~----~~~l~gK~~~~~~t~g~~~-----g~~---~~~l~~~~~~l~~~g~~vv~~ 145 (202)
++|+.+|.|+|++.. .|. ...|+||++.++.|.|++. ++. +..+..+...+...||.+++.
T Consensus 69 ~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~ 142 (176)
T PRK00871 69 SIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPP 142 (176)
T ss_pred cccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcce
Confidence 999999999999853 221 1348999998888777641 111 222445555566778887753
No 45
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=99.56 E-value=1.6e-14 Score=109.27 Aligned_cols=113 Identities=24% Similarity=0.242 Sum_probs=85.0
Q ss_pred ceEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCC--CCCCCCcCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPP--KTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|||||||+.|+ +.|..+++.+.+.+++ .|+++...++....-+ +.. .++. .+.|+. ...+++.+||.|||..
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~-~~~~v~~~dl~~~~fd-~~~--~~~d~~~~~Dv~-~E~e~l~~AD~ivlqf 75 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNE-AGHEVALKDLYALGFD-PYL--TYPDGEFPIDVK-AEQEKLLWADVIVLQF 75 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHH-cchHHHhhhhhhhcCC-cee--ecCccCCCCCHH-HHHHHHHhcceEEEEc
Confidence 38999999997 8889999999999999 8988887777542110 000 0111 112333 2478999999999999
Q ss_pred cccCCcchHHHHHHHHhhhhh-hh---h-----ccCCCCceEEEEecCCC
Q 028917 80 PSRFGVMAAQCKAFFDATYEL-WA---S-----QALAGKPAGIFWSTGFH 120 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~-~~---~-----~~l~gK~~~~~~t~g~~ 120 (202)
|+||+++|+.+|.|||++... |. . +.|+||++.+++|.|.+
T Consensus 76 PlwW~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~ 125 (189)
T COG2249 76 PLWWYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAP 125 (189)
T ss_pred CchhccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCC
Confidence 999999999999999998432 21 1 46899999999998864
No 46
>PRK05723 flavodoxin; Provisional
Probab=99.50 E-value=1.3e-12 Score=95.67 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=89.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhcc--CCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKE--ADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--ad~ii~gsP 80 (202)
+||.|+|+|.+|||+.+|+.+++.+.+ .|.++.++... ...++.+ .|.|||++|
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~-~g~~~~~~~~~-----------------------~~~~~~~~~~~~li~~~s 56 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKA-AGFEAWHNPRA-----------------------SLQDLQAFAPEALLAVTS 56 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHH-CCCceeecCcC-----------------------CHhHHHhCCCCeEEEEEC
Confidence 389999999999999999999999998 78877653321 1223333 489999999
Q ss_pred ccC-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCC-ChHHHHHHHHHHHHHcCcEEec
Q 028917 81 SRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG-GQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 81 ~y~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g-~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
||. |.+|.....|.+.+.... +..|+|+++++|+.+.+.++ ..-.+...+...|...|...+.
T Consensus 57 T~G~Ge~Pd~~~~f~~~L~~~~-~~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~ 121 (151)
T PRK05723 57 TTGMGELPDNLMPLYSAIRDQL-PAAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQ 121 (151)
T ss_pred CCCCCCCchhHHHHHHHHHhcC-ccCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEee
Confidence 995 889999999999885311 12689999999999776442 2235667788888888887764
No 47
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=99.47 E-value=1.5e-12 Score=97.73 Aligned_cols=140 Identities=18% Similarity=0.063 Sum_probs=98.4
Q ss_pred CCceEEEEEecCC---ChHHHHHHHHHHHhhc-cCCceEEEEEccCC-Cc---HHHHhhcC--CCCC-C------CCCCc
Q 028917 1 MATKIYIVYYSLY---GHVETMAREVQRGANS-VLGVEATLWQVPET-LS---SVILQKMK--APPK-T------NDVPV 63 (202)
Q Consensus 1 M~~kiliiy~S~~---G~T~~la~~i~~~~~~-~~g~~v~~~~l~~~-~~---~~~~~~~~--~~~~-~------~~~~~ 63 (202)
|+ |||+|-.|+. +.|.++++++.+..++ +.+.++...||... .| .......+ +... + .+..+
T Consensus 1 Ms-kvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd 79 (202)
T COG1182 1 MS-KVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSD 79 (202)
T ss_pred Cc-eEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHH
Confidence 54 9999999985 4689999999999987 35678888888763 33 12222221 1111 0 11111
Q ss_pred CChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhh---------hhccCCCCceEEEEecCCCCCCh----HHHHHH
Q 028917 64 IRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW---------ASQALAGKPAGIFWSTGFHGGGQ----ELTALT 130 (202)
Q Consensus 64 ~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~---------~~~~l~gK~~~~~~t~g~~~g~~----~~~l~~ 130 (202)
...+.+..||.+||++|.||.++|+.+|+|||++.+.- ..+.+.||++.++.+.|+..++. +....+
T Consensus 80 ~l~~ef~aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 80 KLLEEFLAADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHHhcCeEEEEecccccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 24678999999999999999999999999999996421 12467899999999988765543 344566
Q ss_pred HHHHHHHcCcE
Q 028917 131 AVTQLAHHGML 141 (202)
Q Consensus 131 ~~~~l~~~g~~ 141 (202)
++..|...|+.
T Consensus 160 Lr~ilgF~Git 170 (202)
T COG1182 160 LRTILGFLGIT 170 (202)
T ss_pred HHHHhhhcCCC
Confidence 66666666664
No 48
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.41 E-value=6.3e-12 Score=110.56 Aligned_cols=120 Identities=11% Similarity=0.032 Sum_probs=98.0
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
|++++|+|+|.+||++.+|+.+++.+++ .|.+++++++.++ ...++.+++.+||+++|
T Consensus 61 ~~~v~IlygSqTGnae~lA~~la~~l~~-~g~~~~v~~~~d~---------------------~~~~L~~~~~vl~v~ST 118 (600)
T PRK10953 61 MPGITLISASQTGNARRVAEQLRDDLLA-AKLNVNLVNAGDY---------------------KFKQIAQEKLLIVVTST 118 (600)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHh-CCCCcEEechHhC---------------------CHhHhccCCeEEEEECC
Confidence 3589999999999999999999999998 8999998888663 34668889999999999
Q ss_pred c-CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 82 R-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 82 y-~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
| .|.+|..++.|.+.+...- ...|.|+++++|+.+.+.....-.+...+.+.|...|...+.
T Consensus 119 ~G~Ge~Pdna~~F~~~L~~~~-~~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~ 181 (600)
T PRK10953 119 QGEGEPPEEAVALHKFLFSKK-APKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLL 181 (600)
T ss_pred CCCCCCChhHHHHHHHHhhCc-CcCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEee
Confidence 9 7999999999999884321 136899999999998775433334567777888888888774
No 49
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.34 E-value=3e-11 Score=106.58 Aligned_cols=119 Identities=14% Similarity=0.067 Sum_probs=96.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
++|+|+|+|.+|||+.+|+.+++.+++ .|+++++.++.++ ...++.+++.+||+++||
T Consensus 59 ~~i~IlygSqTGnae~~A~~l~~~l~~-~g~~~~v~~~~d~---------------------~~~~l~~~~~li~v~ST~ 116 (597)
T TIGR01931 59 KRVTILYGSQTGNARRLAKRLAEKLEA-AGFSVRLSSADDY---------------------KFKQLKKERLLLLVISTQ 116 (597)
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHh-CCCccEEechHHC---------------------CHhhcccCceEEEEeCCC
Confidence 479999999999999999999999998 8999999888763 345678889999999999
Q ss_pred -CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 83 -FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 83 -~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
.|.+|..++.|.+.+...- ...|.|+++++|+.+.+.....-.+...+.+.|...|...+.
T Consensus 117 GeGe~Pdna~~F~~~L~~~~-~~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~ 178 (597)
T TIGR01931 117 GEGEPPEEAISFHKFLHSKK-APKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLL 178 (597)
T ss_pred CCCcCCHHHHHHHHHHHhCC-CcccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEee
Confidence 6999999999999875311 136899999999987764432234567777888888887764
No 50
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=99.32 E-value=9.3e-12 Score=89.22 Aligned_cols=132 Identities=22% Similarity=0.168 Sum_probs=83.9
Q ss_pred ceEEEEEecCC--ChHHHHHHHHHHHhhc-cCCceEEEEEccCCCcHHHHhhcCCCCCC-CCC----CcCChhhhccCCe
Q 028917 3 TKIYIVYYSLY--GHVETMAREVQRGANS-VLGVEATLWQVPETLSSVILQKMKAPPKT-NDV----PVIRPHQLKEADG 74 (202)
Q Consensus 3 ~kiliiy~S~~--G~T~~la~~i~~~~~~-~~g~~v~~~~l~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~l~~ad~ 74 (202)
+||++|.+|.. .-.-.+|.++.+--++ ..|.+++.+||.+ .|........-+++. |.. .+....++.++|.
T Consensus 11 ~kv~~imGSvR~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~-lPL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~aD~ 89 (199)
T KOG4530|consen 11 IKVAAIMGSVRKKRFCPGIARAVIELTKESVPGLQIEYVDLSP-LPLINTDLEVNPIKSVDEYYPPVTEAWRQKILEADS 89 (199)
T ss_pred HHHHHHhhhhhhcccCHHHHHHHHHhhhccCCCCceEEEeccC-CccccCCcccCccccccccCcHHHHHHHHHHhhcce
Confidence 47888999963 3344466665554444 3688899999987 231000000011111 111 1123578999999
Q ss_pred eEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 75 FLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 75 ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
|+|.||.||+++|+.+|+.+|+++ +.|.||++.+++ +|+ +||. ..-..+.+......|+|.
T Consensus 90 ivFvtPqYN~gypA~LKNAlD~ly-----heW~gKPalivS-yGG-hGGg-~c~~qL~~v~~fLkm~va 150 (199)
T KOG4530|consen 90 IVFVTPQYNFGYPAPLKNALDWLY-----HEWAGKPALIVS-YGG-HGGG-RCQYQLRQVGVFLKMHVA 150 (199)
T ss_pred EEEecccccCCCchHHHHHHHHhh-----hhhcCCceEEEE-ecC-CCCc-hHHHHHHHHHhhheeeee
Confidence 999999999999999999999996 478999997765 455 3433 233445555555566654
No 51
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.11 E-value=1.1e-09 Score=78.47 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=74.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
.+.|+|+|.+|||+++++.+... ...+++.+. +.+...+-++|.+|||.
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~--------~~~i~i~~~-----------------------~~~~~~~~~~lv~PTy~ 50 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLP--------ATRIPINER-----------------------ERLEVDEPYILITPTYG 50 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCc--------ceEEecCCC-----------------------ccccCCCCEEEEEeccC
Confidence 48899999999999887665322 234454320 12456788999999997
Q ss_pred -----CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHH-HcCcEEecCCCcCCCCccccc
Q 028917 84 -----GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLA-HHGMLFVPLGYTFGSGMFEMN 157 (202)
Q Consensus 84 -----g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~-~~g~~vv~~~~~~~~~~~~~~ 157 (202)
|.+|..++.|++... -+....++++++....|. ......+.+. +.+ ++..+.
T Consensus 51 ~g~~~G~vP~~v~~Fl~~~~-------n~~~~~gV~gsGnr~~g~---~f~~a~~~i~~~~~---vp~l~k--------- 108 (134)
T PRK03600 51 GGGTAGAVPKQVIRFLNDEH-------NRKLLRGVIASGNRNFGD---AFALAGDVISAKCQ---VPLLYR--------- 108 (134)
T ss_pred CCCcCCcccHHHHHHHhccc-------cCCcEEEEEEecCchHHH---HHHHHHHHHHHHhC---CCeEEE---------
Confidence 489999999998752 123455566553322121 1222222222 222 221111
Q ss_pred cccCcccccceeecCCCCCCCCHHHHHHHHHHhHHH
Q 028917 158 EVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYV 193 (202)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l 193 (202)
| +..++++|.+++.++.+++
T Consensus 109 ------------~----El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 109 ------------F----ELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred ------------E----ecCCCHHHHHHHHHHHHHH
Confidence 1 2468889999999998888
No 52
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=98.95 E-value=1.8e-08 Score=71.17 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=51.5
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC-Cc
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF-GV 85 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~-g~ 85 (202)
|+|.|.+|||+++++ + .|.++..+.+.+. ....+ ++|.|++ |++|. |.
T Consensus 1 IvY~S~TGNte~fv~-------~-lg~~~~~i~~~~~---------------------d~~~~-~~~~vli-TyT~G~G~ 49 (125)
T TIGR00333 1 IYFSSKTGNVQRFVE-------K-LGFQHIRIPVDET---------------------DDIHV-DQEFVLI-TYTGGFGA 49 (125)
T ss_pred CEEEcccccHHHHHH-------H-cCCCcEEeecCCc---------------------chhhc-CCCEEEE-ecCCCCCc
Confidence 689999999999933 2 3545544444321 12234 8999988 99995 66
Q ss_pred chHHHHHHHHhhhhhhhhccCCCCceEEEEecCC
Q 028917 86 MAAQCKAFFDATYELWASQALAGKPAGIFWSTGF 119 (202)
Q Consensus 86 ~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~ 119 (202)
+|..+..|++... . +..++++++..
T Consensus 50 vP~~~~~Fle~~~------n---~~~gV~gSGn~ 74 (125)
T TIGR00333 50 VPKQTISFLNKKH------N---LLRGVAASGNK 74 (125)
T ss_pred CCHHHHHHHHhhh------h---cEEEEEEcCCC
Confidence 9999999999762 2 77888876543
No 53
>PRK02551 flavoprotein NrdI; Provisional
Probab=98.57 E-value=1.9e-06 Score=62.97 Aligned_cols=139 Identities=16% Similarity=0.167 Sum_probs=79.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccC-CceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVL-GVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
.++.|+|.|.+|||++.++.+...+.++. +..+..+++.+..++ ..+.+..-.-.|+.+||
T Consensus 2 ~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~------------------~~~~~~~~~p~vli~pT 63 (154)
T PRK02551 2 KTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHE------------------TTDFFPETEPFVAFLPT 63 (154)
T ss_pred CceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCc------------------cccccccCCCEEEEEee
Confidence 47999999999999999999886654311 333344554432110 01113445778899999
Q ss_pred c-CCc----------chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCC
Q 028917 82 R-FGV----------MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFG 150 (202)
Q Consensus 82 y-~g~----------~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~ 150 (202)
| .|+ +|.++..|+..- ..+....++|+++-...| +.-...-...-.+.+.-++. .
T Consensus 64 Y~~gG~~~~~~~~~~vp~~v~dFL~~~-------~N~~~~~gVigsGNrNfg--~~F~~aa~~ia~~~~vP~L~---~-- 129 (154)
T PRK02551 64 YLEGGNGIDNGDVEILTTPLGDFIAYH-------DNAKRCLGIIGSGNRNFN--NQYCLTAKQYAKRFGFPMLA---D-- 129 (154)
T ss_pred ecCCCCCcccCccccchHHHHHHHcch-------hhhhheEEEEeecccHHH--HHHHHHHHHHHHHcCCCEEE---E--
Confidence 9 655 677888888543 124455667765432112 22222222233344443331 0
Q ss_pred CCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHH
Q 028917 151 SGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
|. .+-+++|+++.++.-+++.+.
T Consensus 130 -------------------fE----l~GT~~Dv~~v~~~~~~~~~~ 152 (154)
T PRK02551 130 -------------------FE----LRGTPSDIERIAAIIAELYAA 152 (154)
T ss_pred -------------------ee----ccCCHHHHHHHHHHHHHHHHh
Confidence 11 346678999888877766653
No 54
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=98.45 E-value=1.9e-06 Score=72.56 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=92.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
++|+|+|+|.|||..-+|+.|.+.+.. .|..+.+..+.++ ..++|.+.+.|||...|-
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r-~~~~~~V~s~Dey---------------------d~~~ll~~~~vvFVcSTT 58 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHR-RGLQCLVMSMDEY---------------------DVEKLLDERLVVFVCSTT 58 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHh-ccCCceEeecccc---------------------CHhHhccCceEEEEEecC
Confidence 379999999999999999999999998 8888888777653 356788889999887777
Q ss_pred -CCcchHHHHHHHHhhhhh-hhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 83 -FGVMAAQCKAFFDATYEL-WASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 83 -~g~~~~~~k~fld~~~~~-~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
.|.+|..||.|..-+.+. .....|++-..++++-+.+.......+.+.+.+.|...|.+-+
T Consensus 59 GqGe~P~Nmk~~WrfL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~ 121 (574)
T KOG1159|consen 59 GQGEEPDNMKKFWRFLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSV 121 (574)
T ss_pred CCCCCCccHHHHHHHHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccc
Confidence 599999999987655431 1123577888999998877554444567778888888888755
No 55
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=97.67 E-value=0.00016 Score=50.86 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=36.5
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC-Cc
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF-GV 85 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~-g~ 85 (202)
|+|.|.+|||++.++.+...+.. .-+.+.+ ..+.+.-.+-.|+.+|||. |.
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~------~~i~~~~----------------------~~~~~~~~ep~vLitpTy~~G~ 52 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPA------IRIPIRE----------------------ISPDLEVDEPFVLITPTYGFGE 52 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SE------EEE-SSC----------------------TTSTS--SS-EEEEEE-BTTTB
T ss_pred CEEECCCcCHHHHHHHHcccchh------ccccccc----------------------ccccccCCCCEEEEecccCCCC
Confidence 68999999999999887665443 2222222 1122344567889999996 54
Q ss_pred ----chHHHHHHHHhh
Q 028917 86 ----MAAQCKAFFDAT 97 (202)
Q Consensus 86 ----~~~~~k~fld~~ 97 (202)
+|..+..||+.-
T Consensus 53 ~~~~vp~~v~~FL~~~ 68 (122)
T PF07972_consen 53 NDGGVPKQVIRFLENP 68 (122)
T ss_dssp SSTSS-HHHHHHHHSH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 899999999943
No 56
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.0026 Score=45.14 Aligned_cols=126 Identities=14% Similarity=0.146 Sum_probs=70.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFG 84 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g 84 (202)
+.++|.|.+|||.+-++.+. +.+ +++... ...+.+.=.+-.|+.+|||.+
T Consensus 3 ~~v~f~S~SgNt~RFv~kL~--~~~--------~~I~~~--------------------~~~~~~~v~epyvlitpTyg~ 52 (141)
T COG1780 3 LLVYFSSLSGNTHRFVEKLG--LPA--------VRIPLN--------------------REEDPIEVDEPYVLITPTYGG 52 (141)
T ss_pred eEEEEEecCccHHHHHHHhC--CCc--------eecccc--------------------cccCCccCCCCeEEEeccccC
Confidence 67888899999998877654 221 222210 011224445778999999975
Q ss_pred c-----chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 85 V-----MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 85 ~-----~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
+ +|.++..||..- .-+.+.-++++++-...|.. . ...-...-++.+.-++. .
T Consensus 53 G~~~~~Vp~~vi~FLn~~-------~Nr~~~rGViaSGN~NfG~~-f-~~Ag~~iS~k~~vPlLy---~----------- 109 (141)
T COG1780 53 GGTVGAVPKQVIRFLNNE-------HNRALCRGVIASGNRNFGDN-F-ALAGDVISAKCGVPLLY---R----------- 109 (141)
T ss_pred CCccCccCHHHHHHhccc-------cchhheEEEEecCCccHHHH-H-HHHHHHHHHHhCCCEEE---E-----------
Confidence 5 899999999642 11334445555533222221 1 11111222333443331 0
Q ss_pred cCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 160 KGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
|. ..-+++|++..+....++.+..
T Consensus 110 ----------FE----L~GT~~Dv~~v~~~v~~~~~~~ 133 (141)
T COG1780 110 ----------FE----LLGTAEDVAAVRKGVTEFWKRA 133 (141)
T ss_pred ----------Ee----ccCCHHHHHHHHHHHHHHHHhC
Confidence 11 3466789998888877777654
No 57
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=97.06 E-value=0.0016 Score=43.75 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|..||+++.+|..|.+..++..+.+.+++ .|+++++...
T Consensus 1 mk~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~ 39 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQC 39 (94)
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEe
Confidence 54489999999988888889999999999 8988877663
No 58
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0034 Score=55.52 Aligned_cols=117 Identities=14% Similarity=0.051 Sum_probs=79.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhcc-CCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKE-ADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ad~ii~gsP~y 82 (202)
.++|+|+|.+||-+.+|..+++.+.. .|..+.+.++.++.+ .++.+ =..+++.+...
T Consensus 49 ~~~il~~sqtG~a~~~A~~~a~~~~~-~g~~~~~~~~~~~~~---------------------~~~~~~~~~~~i~st~g 106 (587)
T COG0369 49 PITVLYGSQTGNAEGLAEELAKELEA-AGLQVLVASLDDYKP---------------------KDIAEERLLLFVVSTQG 106 (587)
T ss_pred ceEEEEccCCccHHHHHHHHHHHHHh-cCCceeecchhhcCh---------------------hhHHhhhceEEEEcccc
Confidence 58999999999999999999999999 888888888876422 22222 35666667777
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
.|.+|..+..|.+-+.... ...|.+-..++++.+.+.......+-..+...+..+|...+
T Consensus 107 eGe~p~na~~f~~~l~~~~-a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l 166 (587)
T COG0369 107 EGEPPDNAVAFHEFLKGKK-APKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRL 166 (587)
T ss_pred CCCCCCchHHHHHHhcccc-cccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccc
Confidence 8999999999998875321 13466666666665544322122233445556666665544
No 59
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=96.81 E-value=0.011 Score=41.04 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=46.5
Q ss_pred CCceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEE
Q 028917 1 MATKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~ 77 (202)
||||+++|-.+++| +|...++.+.+..++ .|.++.+--=... ... ....+++.++|.||+
T Consensus 1 ~~mkivaVtacp~GiAht~lAAeaL~kAA~~-~G~~i~VE~qg~~----------------g~~~~lt~~~i~~Ad~VIi 63 (114)
T PRK10427 1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQL-EKWGVKIETQGAL----------------GTENRLTDEDIRRADVVLL 63 (114)
T ss_pred CCceEEEEeeCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCc----------------CcCCCCCHHHHHhCCEEEE
Confidence 77799999999987 788888999999988 8987664221110 111 023588999999999
Q ss_pred eccc
Q 028917 78 GFPS 81 (202)
Q Consensus 78 gsP~ 81 (202)
..-.
T Consensus 64 a~d~ 67 (114)
T PRK10427 64 ITDI 67 (114)
T ss_pred EecC
Confidence 9655
No 60
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=96.16 E-value=0.17 Score=34.63 Aligned_cols=98 Identities=19% Similarity=0.203 Sum_probs=59.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||+++.++.-| |..+++.+.+..++ .|+++++-..... .......++|.|+++
T Consensus 4 kkIllvC~~G~s-TSll~~km~~~~~~-~gi~~~V~A~~~~--------------------~~~~~~~~~DviLl~---- 57 (106)
T PRK10499 4 KHIYLFCSAGMS-TSLLVSKMRAQAEK-YEVPVIIEAFPET--------------------LAGEKGQNADVVLLG---- 57 (106)
T ss_pred CEEEEECCCCcc-HHHHHHHHHHHHHH-CCCCEEEEEeecc--------------------hhhccccCCCEEEEC----
Confidence 469998866544 67788888888888 7887776443321 112345678977664
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe--cCCCCCChHHHHHHHHHHHHHc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWS--TGFHGGGQELTALTAVTQLAHH 138 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t--~g~~~g~~~~~l~~~~~~l~~~ 138 (202)
|+++..++.+.. ...++++.++-. +|. -+.+..+......+.+.
T Consensus 58 -----Pqi~~~~~~i~~-----~~~~~pV~~I~~~~Yg~--~dg~~vl~~a~~~~~~~ 103 (106)
T PRK10499 58 -----PQIAYMLPEIQR-----LLPNKPVEVIDSLLYGK--VDGLGVLKAAVAAIKKA 103 (106)
T ss_pred -----HHHHHHHHHHHh-----hcCCCCEEEEChHhhhc--CCHHHHHHHHHHHHHHh
Confidence 456666666632 234567777755 343 23345566655555443
No 61
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=96.11 E-value=0.011 Score=39.80 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=29.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
++||+++.++.-+ |..+++.+.+.+++ .|+++++...
T Consensus 3 ~~~ILl~C~~G~s-SS~l~~k~~~~~~~-~gi~~~v~a~ 39 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLVNKMNKAAEE-YGVPVKIAAG 39 (95)
T ss_pred ccEEEEECCCchh-HHHHHHHHHHHHHH-CCCcEEEEEe
Confidence 4579999988766 55799999999999 8988776554
No 62
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.1 Score=35.12 Aligned_cols=80 Identities=21% Similarity=0.224 Sum_probs=56.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||+++..+ --.|..|++.+.+.+++ .|.++++.-..+. ...+.+.++|.+++|-
T Consensus 2 k~IlLvC~a-GmSTSlLV~Km~~aA~~-kg~~~~I~A~s~~--------------------e~~~~~~~~DvvLlGP--- 56 (102)
T COG1440 2 KKILLVCAA-GMSTSLLVTKMKKAAES-KGKDVTIEAYSET--------------------ELSEYIDNADVVLLGP--- 56 (102)
T ss_pred ceEEEEecC-CCcHHHHHHHHHHHHHh-CCCceEEEEechh--------------------HHHHhhhcCCEEEECh---
Confidence 489888754 44688999999999999 8999888766552 2356677999999984
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
+++-.++.+... ..-+|+|+.++-+
T Consensus 57 ------Qv~y~~~~~~~~---~~~~giPV~vI~~ 81 (102)
T COG1440 57 ------QVRYMLKQLKEA---AEEKGIPVEVIDM 81 (102)
T ss_pred ------HHHHHHHHHHHH---hcccCCCeEEeCH
Confidence 444444444321 1346789999866
No 63
>PRK07053 glutamine amidotransferase; Provisional
Probab=95.82 E-value=0.079 Score=41.65 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=38.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE-ec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF-GF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~-gs 79 (202)
||++|+||-.++.-+-..+ .+.+++ .|.++++++..+. +. ...++.++|+||+ |+
T Consensus 1 ~m~~ilviqh~~~e~~g~i----~~~L~~-~g~~~~v~~~~~~----------------~~---~~~~~~~~d~lii~Gg 56 (234)
T PRK07053 1 MMKTAVAIRHVAFEDLGSF----EQVLGA-RGYRVRYVDVGVD----------------DL---ETLDALEPDLLVVLGG 56 (234)
T ss_pred CCceEEEEECCCCCCChHH----HHHHHH-CCCeEEEEecCCC----------------cc---CCCCccCCCEEEECCC
Confidence 8889999999986554444 444455 6888888887541 11 1234567898777 66
Q ss_pred ccc
Q 028917 80 PSR 82 (202)
Q Consensus 80 P~y 82 (202)
|.-
T Consensus 57 p~~ 59 (234)
T PRK07053 57 PIG 59 (234)
T ss_pred CCC
Confidence 643
No 64
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=95.70 E-value=0.043 Score=36.06 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=43.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||+++.+|.-|++..+++.+.+.+++ .|++++....... .......++|.|+.+..+-+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~-~gi~~~~~~~~~~--------------------~~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKE-LGIEVEVSAGSIL--------------------EVEEIADDADLILLTPQIAY 59 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHH-TTECEEEEEEETT--------------------THHHHHTT-SEEEEEESSGG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHh-ccCceEEEEeccc--------------------ccccccCCCcEEEEcCccch
Confidence 78999999888888888999999999 8987776665420 12334566999988876643
No 65
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=95.47 E-value=0.034 Score=37.66 Aligned_cols=79 Identities=11% Similarity=0.078 Sum_probs=51.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||+++.++. -.|..+++.+.+.+++ .|.++++...... .....+.++|.|+++..
T Consensus 2 ~Ill~C~~G-aSSs~la~km~~~a~~-~gi~~~i~a~~~~--------------------e~~~~~~~~Dvill~PQ--- 56 (99)
T cd05565 2 NVLVLCAGG-GTSGLLANALNKGAKE-RGVPLEAAAGAYG--------------------SHYDMIPDYDLVILAPQ--- 56 (99)
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHHH-CCCcEEEEEeeHH--------------------HHHHhccCCCEEEEcCh---
Confidence 688888554 6788999999999999 8998887654431 13456778896665543
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
++-.++.+... ..-.|+|+.++-.
T Consensus 57 ------v~~~~~~i~~~---~~~~~ipv~~I~~ 80 (99)
T cd05565 57 ------MASYYDELKKD---TDRLGIKLVTTTG 80 (99)
T ss_pred ------HHHHHHHHHHH---hhhcCCCEEEeCH
Confidence 34444554321 1235788877753
No 66
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=95.43 E-value=0.11 Score=36.15 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=46.6
Q ss_pred ceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~gs 79 (202)
+||+-|-.-|+| ||...++++.+...+ .|.++.+-.=.. .+.. ....+++.+||+||+++
T Consensus 2 ~~IVAVTACPtGIAHTyMAAeaLe~~A~~-~g~~IKVETqGs----------------~G~eN~LT~edI~~Ad~VI~Aa 64 (122)
T COG1445 2 KKIVAVTACPTGIAHTYMAAEALEKAAKK-LGVEIKVETQGA----------------VGIENRLTAEDIAAADVVILAA 64 (122)
T ss_pred ccEEEEecCCchHHHHHHHHHHHHHHHHH-cCCeEEEEcCCc----------------ccccCcCCHHHHHhCCEEEEEe
Confidence 488888888998 899999999999998 898776532211 0110 13578999999999997
Q ss_pred cc
Q 028917 80 PS 81 (202)
Q Consensus 80 P~ 81 (202)
=+
T Consensus 65 D~ 66 (122)
T COG1445 65 DI 66 (122)
T ss_pred cc
Confidence 55
No 67
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=95.28 E-value=0.038 Score=37.74 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=29.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+||+++.++.-+ |..+++.+.+.+++ .|.++++...
T Consensus 2 kkILlvCg~G~S-TSlla~k~k~~~~e-~gi~~~i~a~ 37 (104)
T PRK09590 2 KKALIICAAGMS-SSMMAKKTTEYLKE-QGKDIEVDAI 37 (104)
T ss_pred cEEEEECCCchH-HHHHHHHHHHHHHH-CCCceEEEEe
Confidence 589999988774 44999999999999 8988776444
No 68
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=95.09 E-value=0.33 Score=41.33 Aligned_cols=91 Identities=21% Similarity=0.136 Sum_probs=62.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
+-.|+|.|.+|..++.|+.+.+.+.+ ...-+.++++. +.| .++-+--.+++..|.|.
T Consensus 48 ~~~vfy~s~~GtA~~~A~~~~e~~~s-ld~~~~llnl~-y~~---------------------~d~pen~~~~lv~~~~~ 104 (601)
T KOG1160|consen 48 KSKVFYSSLTGTAKKAAKSVHEKLKS-LDELPKLLNLD-YSD---------------------FDVPENALYFLVLPSYD 104 (601)
T ss_pred cceEEEEeccchHHHHHHHHHHHHHh-cccchhhcCCC-CCc---------------------cCCCcceEEEEEecccC
Confidence 45789999999999999999999988 55556666665 322 11234456778888888
Q ss_pred CcchHHHHHHHHhhhhhh-----hhccCCCCceEEEEecCC
Q 028917 84 GVMAAQCKAFFDATYELW-----ASQALAGKPAGIFWSTGF 119 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~-----~~~~l~gK~~~~~~t~g~ 119 (202)
+..| +.-|+..+.... .+..|+|-+.++|+.+.+
T Consensus 105 ~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~ 143 (601)
T KOG1160|consen 105 IDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDS 143 (601)
T ss_pred CCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccch
Confidence 8777 455666554321 123577888888887654
No 69
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=94.38 E-value=0.15 Score=33.47 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=28.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATL 37 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~ 37 (202)
.||++++++..|.+..++..+.+.+.+ .++.+.+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~-~~i~~~v 34 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKE-NGIDVKV 34 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEE
Confidence 479999999999999999999999987 6765444
No 70
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=94.36 E-value=0.084 Score=35.46 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=48.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||+++.++.-+.+ .+++.+.+.+++ .|.++++....-. .......++|. |+.+|-
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~-~~~~~~v~~~~~~--------------------~~~~~~~~~Di-il~~Pq-- 55 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEK-RGIDAEIEAVPES--------------------ELEEYIDDADV-VLLGPQ-- 55 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHH-CCCceEEEEecHH--------------------HHHHhcCCCCE-EEEChh--
Confidence 5888888876544 689999999999 8887666544320 12234578884 455554
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
++..++++... ....++++.++-.
T Consensus 56 ------v~~~~~~i~~~---~~~~~~pv~~I~~ 79 (96)
T cd05564 56 ------VRYMLDEVKKK---AAEYGIPVAVIDM 79 (96)
T ss_pred ------HHHHHHHHHHH---hccCCCcEEEcCh
Confidence 44445554321 1235778777644
No 71
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=93.49 E-value=0.36 Score=32.22 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=28.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEA 35 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v 35 (202)
+||+.+.++.-|.+-.+...+.+.+++ .|+.+
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~-~gi~~ 33 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKE-LGIDV 33 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHH-cCCCc
Confidence 499999999999999999999999999 88743
No 72
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=93.10 E-value=0.7 Score=35.28 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=30.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
||+||-+. +||+..++ +.+++ .|+++++++ . ..++.++|+||+.-+
T Consensus 2 ~~~v~~~~-~~~~~~~~----~~l~~-~G~~~~~~~--~-----------------------~~~~~~~d~iii~G~ 47 (200)
T PRK13143 2 MIVIIDYG-VGNLRSVS----KALER-AGAEVVITS--D-----------------------PEEILDADGIVLPGV 47 (200)
T ss_pred eEEEEECC-CccHHHHH----HHHHH-CCCeEEEEC--C-----------------------HHHHccCCEEEECCC
Confidence 78888765 67776554 44555 677777653 1 134678999999764
No 73
>PRK06490 glutamine amidotransferase; Provisional
Probab=92.41 E-value=1.2 Score=35.01 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=37.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe-cc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG-FP 80 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g-sP 80 (202)
|++|++|-.+..++...+++.+. + .|.++++++.... + ..++++.++|++|+. +|
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~----~-~g~~~~v~~~~~~----------------~---~~p~~l~~~dgvii~Ggp 62 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQ----E-RGYPLDIRRPRLG----------------D---PLPDTLEDHAGAVIFGGP 62 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHH----H-CCCceEEEeccCC----------------C---CCCCcccccCEEEEECCC
Confidence 34899998888887777766654 4 5778888776431 1 123457788976654 65
Q ss_pred c
Q 028917 81 S 81 (202)
Q Consensus 81 ~ 81 (202)
-
T Consensus 63 ~ 63 (239)
T PRK06490 63 M 63 (239)
T ss_pred C
Confidence 3
No 74
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=92.26 E-value=1.5 Score=33.82 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=46.5
Q ss_pred eEEEEEecCCC---h-HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSLYG---H-VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G---~-T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|||||++...| . -....+.+++.+++..+++|++.+=.+ . ...+.|+++|+||+-+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~-----------------~---~~~~~L~~~Dvvv~~~ 60 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPD-----------------D---LTPENLKGYDVVVFYN 60 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGG-----------------C---TSHHCHCT-SEEEEE-
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcc-----------------c---CChhHhcCCCEEEEEC
Confidence 78999987422 2 246777777777722677777533211 1 1346799999999987
Q ss_pred cccCC-cc-hHHHHHHHHhhhhhhhhccCCCCceEEE
Q 028917 80 PSRFG-VM-AAQCKAFFDATYELWASQALAGKPAGIF 114 (202)
Q Consensus 80 P~y~g-~~-~~~~k~fld~~~~~~~~~~l~gK~~~~~ 114 (202)
-. + .+ +.+.+.|.+.+. +|+.+..+
T Consensus 61 ~~--~~~l~~~~~~al~~~v~--------~Ggglv~l 87 (217)
T PF06283_consen 61 TG--GDELTDEQRAALRDYVE--------NGGGLVGL 87 (217)
T ss_dssp SS--CCGS-HHHHHHHHHHHH--------TT-EEEEE
T ss_pred CC--CCcCCHHHHHHHHHHHH--------cCCCEEEE
Confidence 65 3 23 455566666552 67655444
No 75
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=91.80 E-value=0.67 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=29.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
+||+++++|..|.+..++..+.+.+++ .+..+++..
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~-~~~~~~v~~ 36 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKK-AGLEIPVTN 36 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-CCCceEEEE
Confidence 379999999999888889999999988 776555443
No 76
>PRK08250 glutamine amidotransferase; Provisional
Probab=90.91 E-value=2.2 Score=33.46 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=34.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE-ecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF-GFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~-gsP~y 82 (202)
||+||...+.-....+...+ ++ .|++++++++... + ....++.++|+||+ |+|-.
T Consensus 2 ~i~vi~h~~~e~~g~~~~~~----~~-~g~~~~~~~~~~g----------------~---~~p~~~~~~d~vii~GGp~~ 57 (235)
T PRK08250 2 RVHFIIHESFEAPGAYLKWA----EN-RGYDISYSRVYAG----------------E---ALPENADGFDLLIVMGGPQS 57 (235)
T ss_pred eEEEEecCCCCCchHHHHHH----HH-CCCeEEEEEccCC----------------C---CCCCCccccCEEEECCCCCC
Confidence 79999988753333333333 44 6888888776541 0 12335678999877 67643
No 77
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=90.71 E-value=2 Score=28.75 Aligned_cols=59 Identities=19% Similarity=0.222 Sum_probs=39.1
Q ss_pred EEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEEeccc
Q 028917 6 YIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 6 liiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~gsP~ 81 (202)
+++..+++| ++..+++.+.+.+++ .|+++.+..-... ... ....+++.++|.||+..-+
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~-~g~~~~ve~~~~~----------------g~~~~l~~~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKK-LGWEIKVETQGSL----------------GIENELTAEDIAEADAVILAADV 63 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecCc----------------CccCcCCHHHHhhCCEEEEecCC
Confidence 445555655 677888899999998 8988665422211 111 0124789999999998765
No 78
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.66 E-value=6 Score=31.89 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|++||.|| + .|+ +...++..+.+ .|.++..++........ +....+... + ...+.+.++|.||+..|
T Consensus 1 ~~~~Igvi-G--~G~---mG~~~a~~l~~-~g~~v~~~d~~~~~~~~-~~~~g~~~~-~----~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 1 MTMKVGFI-G--LGI---MGKPMSKNLLK-AGYSLVVYDRNPEAVAE-VIAAGAETA-S----TAKAVAEQCDVIITMLP 67 (296)
T ss_pred CCceEEEE-c--cCH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHH-HHHCCCeec-C----CHHHHHhcCCEEEEeCC
Confidence 77788877 2 343 34445555555 67788777654311111 111111000 0 12334689999999999
Q ss_pred ccCCcchHHHHHHH---HhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 81 SRFGVMAAQCKAFF---DATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 81 ~y~g~~~~~~k~fl---d~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
.. ..++..+ +.+.. ....|+. +...++. .......+...+...|..++..+.
T Consensus 68 ~~-----~~~~~v~~~~~~~~~----~~~~g~i---iid~st~---~~~~~~~l~~~~~~~g~~~~d~pv 122 (296)
T PRK11559 68 NS-----PHVKEVALGENGIIE----GAKPGTV---VIDMSSI---APLASREIAAALKAKGIEMLDAPV 122 (296)
T ss_pred CH-----HHHHHHHcCcchHhh----cCCCCcE---EEECCCC---CHHHHHHHHHHHHHcCCcEEEcCC
Confidence 73 3445444 22211 1122332 2222221 123455666667777877776443
No 79
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=90.35 E-value=5.3 Score=30.73 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=45.0
Q ss_pred ceEEEEEecCCCh-HHH----HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 3 TKIYIVYYSLYGH-VET----MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~~G~-T~~----la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
+++++++..+... .++ -++-+...+.+ .|.+.+++++-+ .++| ..+++..||++|+
T Consensus 5 kr~Alf~at~dsefvk~~yGgy~nvfvsllg~-ege~wd~frV~~----------------gefP--~~~Dl~ky~gfvI 65 (245)
T KOG3179|consen 5 KRIALFLATPDSEFVKKAYGGYFNVFVSLLGD-EGEQWDLFRVID----------------GEFP--QEEDLEKYDGFVI 65 (245)
T ss_pred eeEEEEecCCchhhhhhhhcCHHHHHHHHhcc-cCceeEEEEEec----------------CCCC--ChhhhhhhceEEE
Confidence 4688888765321 111 45556677777 788899999877 2444 3578889999999
Q ss_pred eccccC--CcchHH
Q 028917 78 GFPSRF--GVMAAQ 89 (202)
Q Consensus 78 gsP~y~--g~~~~~ 89 (202)
.-.-|. +..++.
T Consensus 66 sGS~~dAf~d~dWI 79 (245)
T KOG3179|consen 66 SGSKHDAFSDADWI 79 (245)
T ss_pred eCCcccccccchHH
Confidence 866663 444443
No 80
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=90.04 E-value=4.4 Score=32.46 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=36.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|++||+|+.+..+.+-..+ .+.+++ .|++++++.+.+.. .....+.++|+|||.--
T Consensus 2 ~~~kvaVl~~pG~n~d~e~----~~Al~~-aG~~v~~v~~~~~~-------------------~~~~~l~~~DgLvipGG 57 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDET----VKAFRR-LGVEPEYVHINDLA-------------------AERKSVSDYDCLVIPGG 57 (261)
T ss_pred CCCEEEEEeCCCCCCHHHH----HHHHHH-CCCcEEEEeecccc-------------------ccccchhhCCEEEECCC
Confidence 3458988886655544433 466666 78888888775410 12345789999998764
No 81
>PRK05665 amidotransferase; Provisional
Probab=89.93 E-value=7 Score=30.84 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=35.2
Q ss_pred CCceEEEEEec-CCChHHH----HHHHHHHHhhccCC--ceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCC
Q 028917 1 MATKIYIVYYS-LYGHVET----MAREVQRGANSVLG--VEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEAD 73 (202)
Q Consensus 1 M~~kiliiy~S-~~G~T~~----la~~i~~~~~~~~g--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad 73 (202)
|.|||+|+... +...+.. ..+.+.+-+.+ .+ .+++++++.+. ++ +.++.++|
T Consensus 1 ~~mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~-~~~~~~~~~~~~~~~----------------~~----p~~~~~~d 59 (240)
T PRK05665 1 MSLRICILETDVLRPELVAQYQGYGRMFEQLFAR-QPIAAEFVVYNVVQG----------------DY----PADDEKFD 59 (240)
T ss_pred CceEEEEEECCCCCHHHHHHhCCHHHHHHHHHHh-CCCCceEEEEeccCC----------------CC----CCCcccCC
Confidence 77789988633 3222211 22334443443 34 45666665441 12 23467899
Q ss_pred eeEEe-ccccCCcchHHHHH
Q 028917 74 GFLFG-FPSRFGVMAAQCKA 92 (202)
Q Consensus 74 ~ii~g-sP~y~g~~~~~~k~ 92 (202)
+||+. +|--.+.-.+.+..
T Consensus 60 giiitGs~~~v~~~~pwi~~ 79 (240)
T PRK05665 60 AYLVTGSKADSFGTDPWIQT 79 (240)
T ss_pred EEEECCCCCCccccchHHHH
Confidence 98875 55433333334433
No 82
>PRK09065 glutamine amidotransferase; Provisional
Probab=89.75 E-value=5.2 Score=31.42 Aligned_cols=75 Identities=4% Similarity=-0.020 Sum_probs=41.4
Q ss_pred CceEEEEEe-cCCChHH----HHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeE
Q 028917 2 ATKIYIVYY-SLYGHVE----TMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFL 76 (202)
Q Consensus 2 ~~kiliiy~-S~~G~T~----~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii 76 (202)
|+||+|+-. ++....+ ...+.+...+.. .|++++++++... ....++.++|+||
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--------------------~~~p~~~~~dgvv 59 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGL-AEQPVVVVRVFAG--------------------EPLPAPDDFAGVI 59 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhcc-CCceEEEEeccCC--------------------CCCCChhhcCEEE
Confidence 347888853 3322211 144555666666 7888888888652 1123567889888
Q ss_pred Ee-ccccCC-cch--HHHHHHHHhh
Q 028917 77 FG-FPSRFG-VMA--AQCKAFFDAT 97 (202)
Q Consensus 77 ~g-sP~y~g-~~~--~~~k~fld~~ 97 (202)
++ +|-... ..| ..++.|+..+
T Consensus 60 i~Gg~~~~~d~~~w~~~~~~~i~~~ 84 (237)
T PRK09065 60 ITGSWAMVTDRLDWSERTADWLRQA 84 (237)
T ss_pred EeCCCcccCCCchhHHHHHHHHHHH
Confidence 76 553222 222 2245556554
No 83
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=89.15 E-value=3.1 Score=31.41 Aligned_cols=102 Identities=13% Similarity=-0.049 Sum_probs=51.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCC-CCCCCcCChhhh--ccCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPK-TNDVPVIRPHQL--KEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l--~~ad~ii~ 77 (202)
|.+||+|+.+ .|....=+-...+.+++ +|.++++..+.......... .+... ..| ...+++ .++|.|++
T Consensus 1 ~~~~~~il~~--~g~~~~e~~~p~~~l~~-ag~~v~~~s~~~~~~~~v~s--s~G~~v~~d---~~l~~~~~~~~D~l~i 72 (196)
T PRK11574 1 MSASALVCLA--PGSEETEAVTTIDLLVR-GGIKVTTASVASDGNLEITC--SRGVKLLAD---APLVEVADGDFDVIVL 72 (196)
T ss_pred CCceEEEEeC--CCcchhhHhHHHHHHHH-CCCeEEEEEccCCCCceEEc--CCCCEEeCC---CCHHHCCCCCCCEEEE
Confidence 7889988874 44444334455666666 68888887764210000000 01000 001 112233 47899888
Q ss_pred eccc---cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 78 GFPS---RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 78 gsP~---y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
.... ....-++.+..|+.+.. -+||+++.++++
T Consensus 73 pGG~~~~~~~~~~~~l~~~L~~~~-------~~g~~v~aic~G 108 (196)
T PRK11574 73 PGGIKGAECFRDSPLLVETVRQFH-------RSGRIVAAICAA 108 (196)
T ss_pred CCCCchhhhhhhCHHHHHHHHHHH-------HCCCEEEEECHh
Confidence 5321 11122344666766652 378888777653
No 84
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=88.83 E-value=1.9 Score=27.08 Aligned_cols=31 Identities=32% Similarity=0.491 Sum_probs=25.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEA 35 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v 35 (202)
||+++.++..|.+..++..+.+.+.+ .+...
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~-~~~~~ 31 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKE-LGIEV 31 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHH-CCCeE
Confidence 57888877788999999999999988 67643
No 85
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=88.64 E-value=4.3 Score=30.61 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=32.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeE-Eeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFL-FGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii-~gsP~ 81 (202)
|||+||-.-. ..|..++ +.+++ .|.++++++..+. ..+++.++|+|| .|.|-
T Consensus 2 ~~iliid~~d-sf~~~i~----~~l~~-~g~~~~v~~~~~~---------------------~~~~l~~~d~iIi~gGp~ 54 (190)
T PRK06895 2 TKLLIINNHD-SFTFNLV----DLIRK-LGVPMQVVNVEDL---------------------DLDEVENFSHILISPGPD 54 (190)
T ss_pred cEEEEEeCCC-chHHHHH----HHHHH-cCCcEEEEECCcc---------------------ChhHhccCCEEEECCCCC
Confidence 5899987432 2333344 44455 5778888876531 234567899998 44664
No 86
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=88.32 E-value=1.1 Score=39.83 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=31.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEE
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
++||+++++|.-|.+-.++..+.+.+++ .|+++++.
T Consensus 506 ~mKILvaCGsGiGTStmva~kIkk~Lke-~GI~veV~ 541 (602)
T PRK09548 506 PVRILAVCGQGQGSSMMMKMKIKKYLDK-RGIPIIMD 541 (602)
T ss_pred ccEEEEECCCCchHHHHHHHHHHHHHHH-cCCCeEEE
Confidence 4589999999999999999999999999 89876543
No 87
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=88.29 E-value=3.5 Score=26.96 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=38.8
Q ss_pred EEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEEeccc
Q 028917 7 IVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 7 iiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~gsP~ 81 (202)
+|-.+++| +|...++.+.+..++ .|.++.+--=... ... ....+++.++|.||+..-+
T Consensus 2 ~vtacp~G~Aht~lAae~L~~aA~~-~G~~i~VE~qg~~----------------g~~~~lt~~~i~~Ad~viia~d~ 62 (85)
T TIGR00829 2 AVTACPTGIAHTFMAAEALEKAAKK-RGWEVKVETQGSV----------------GAQNALTAEDIAAADGVILAADR 62 (85)
T ss_pred EEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCc----------------CccCCCCHHHHHhCCEEEEeccC
Confidence 34566776 788888999999988 8987664221110 111 0235889999999998654
No 88
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=88.08 E-value=2.1 Score=27.63 Aligned_cols=31 Identities=32% Similarity=0.332 Sum_probs=26.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEA 35 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v 35 (202)
|++++++|..|.+..+...+.+.+.+ .+...
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~-~~i~~ 31 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKE-LGIEA 31 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHH-CCCcE
Confidence 58899999999999999999999987 67643
No 89
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.05 E-value=5.4 Score=29.20 Aligned_cols=118 Identities=17% Similarity=0.147 Sum_probs=64.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||.+|= .|+ +...+++.|.+ .|.++..+|..........+..-... . ...+-..++|.|++..|
T Consensus 1 m~-~Ig~IG---lG~---mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~g~~~~-----~-s~~e~~~~~dvvi~~v~ 66 (163)
T PF03446_consen 1 MM-KIGFIG---LGN---MGSAMARNLAK-AGYEVTVYDRSPEKAEALAEAGAEVA-----D-SPAEAAEQADVVILCVP 66 (163)
T ss_dssp -B-EEEEE-----SH---HHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHTTEEEE-----S-SHHHHHHHBSEEEE-SS
T ss_pred CC-EEEEEc---hHH---HHHHHHHHHHh-cCCeEEeeccchhhhhhhHHhhhhhh-----h-hhhhHhhcccceEeecc
Confidence 44 788772 343 66667777777 79999999865311111111110000 0 12455678899999887
Q ss_pred ccCCcchHHHHHHHHh--hhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 81 SRFGVMAAQCKAFFDA--TYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~--~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
- +..++..+.. +.. ...+|+.+.-.+| .+ ......+.+.+..+|..+++.+.
T Consensus 67 ~-----~~~v~~v~~~~~i~~----~l~~g~iiid~sT-~~-----p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 67 D-----DDAVEAVLFGENILA----GLRPGKIIIDMST-IS-----PETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp S-----HHHHHHHHHCTTHGG----GS-TTEEEEE-SS--------HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred c-----chhhhhhhhhhHHhh----ccccceEEEecCC-cc-----hhhhhhhhhhhhhccceeeeeee
Confidence 6 3467777776 321 2224554433322 21 23466778888889999887544
No 90
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=87.60 E-value=2.8 Score=36.59 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=42.6
Q ss_pred ceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEEe
Q 028917 3 TKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLFG 78 (202)
Q Consensus 3 ~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~g 78 (202)
||++.|-.+++| ||...++.+.+..++ .|.++.+-.=... ... ....+++.++|.||+.
T Consensus 4 ~kivaVtacp~GiAht~mAaeaL~~aA~~-~G~~i~VEtqg~~----------------g~~~~lt~~~i~~Ad~VIia 65 (482)
T PRK11404 4 LRIVAITNCPAGIAHTYMVAEALEQKARS-LGHTIKVETQGSS----------------GVENRLSSEEIAAADYVILA 65 (482)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCc----------------cCCCCCCHHHHHhCCEEEEe
Confidence 489999999987 678888999999998 8987664221110 110 0235889999999999
No 91
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=87.59 E-value=2.5 Score=34.16 Aligned_cols=41 Identities=15% Similarity=0.022 Sum_probs=30.8
Q ss_pred CCceEEEEEecCC---ChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLY---GHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~---G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+++|.|++++++ ...-.-++.+.+.|++ .|+++.+++..+
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~ 46 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALRE-AGYDAHPIDPGE 46 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHH-CCCEEEEEecCc
Confidence 5568999997753 3334456888899998 899999988664
No 92
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=86.80 E-value=1.4 Score=28.23 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=24.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANS 29 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~ 29 (202)
.|++++.++..|.+..+++.+.+.+.+
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~~~ 27 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPE 27 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHCCC
Confidence 378999999899999999999999976
No 93
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=86.18 E-value=1.8 Score=33.57 Aligned_cols=72 Identities=19% Similarity=0.130 Sum_probs=40.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| +|++...+ .... .+.+.+++ .|+++..+.+-+..|. . .+........+.++|.|||.||
T Consensus 1 ~~-~ilitr~~--~~~~----~l~~~l~~-~G~~v~~~p~~~~~~~----------~-~~~~~~~~~~~~~~d~iiftS~ 61 (249)
T PRK05928 1 MM-KILVTRPS--PKAE----ELVELLRE-LGFVALHFPLIEIEPG----------R-QLPQLAAQLAALGADWVIFTSK 61 (249)
T ss_pred CC-EEEEeCCH--HHHH----HHHHHHHH-cCCCEEEeccEEEecC----------C-CcChHHHHhhCCCCCEEEEECH
Confidence 54 77775432 2223 44566666 6877665544332110 0 0000012356789999999998
Q ss_pred ccCCcchHHHHHHHHhhh
Q 028917 81 SRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~ 98 (202)
. .++.|++.+.
T Consensus 62 ~-------av~~~~~~~~ 72 (249)
T PRK05928 62 N-------AVEFLLSALK 72 (249)
T ss_pred H-------HHHHHHHHHH
Confidence 6 5677777654
No 94
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=85.50 E-value=4.1 Score=36.34 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=44.7
Q ss_pred ceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~gs 79 (202)
+|++.|-.+++| ||...++.+.+..++ .|.++.+-.=... ... ....+++.++|.||+..
T Consensus 104 ~kivaVtacptGiAht~mAAeaL~~aA~~-~G~~i~VEtqg~~----------------g~~n~lt~~~i~~Ad~VIia~ 166 (563)
T PRK10712 104 KRVVAVTACPTGVAHTFMAAEAIETEAKK-RGWWVKVETRGSV----------------GAGNAITPEEVAAADLVIVAA 166 (563)
T ss_pred ccEEEEecCCCchhHHHHHHHHHHHHHHH-CCCeEEEEecCCc----------------ccCCCCCHHHHHhCCEEEEec
Confidence 478999888987 788889999999998 8987664221110 110 02468899999999997
Q ss_pred cc
Q 028917 80 PS 81 (202)
Q Consensus 80 P~ 81 (202)
-+
T Consensus 167 d~ 168 (563)
T PRK10712 167 DI 168 (563)
T ss_pred CC
Confidence 54
No 95
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=84.88 E-value=16 Score=28.25 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=56.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+-||-+|-...-| |..+.+.+++...+..+++|+++--.-...++|.+.. . ...-+-.+.|.||+++|
T Consensus 1 ~vvkig~ik~GniG-ts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaa--------v--~~~~e~~~pDfvi~isP 69 (277)
T COG1927 1 MVVKIGFIKCGNIG-TSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAA--------V--TEMLEEFNPDFVIYISP 69 (277)
T ss_pred CeeEEEEEEecccc-hHHHHHHHHHhhcccCCceEEEeccccccChHHHHHH--------H--HHHHHhcCCCEEEEeCC
Confidence 55577776433233 6778888888877657888888766554444444321 0 01233467899999999
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
--..-=|...+..+. -.+.++.+++-
T Consensus 70 NpaaPGP~kARE~l~----------~s~~PaiiigD 95 (277)
T COG1927 70 NPAAPGPKKAREILS----------DSDVPAIIIGD 95 (277)
T ss_pred CCCCCCchHHHHHHh----------hcCCCEEEecC
Confidence 654333333333221 24788877754
No 96
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=84.87 E-value=3 Score=32.09 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=30.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|| ||.||.+. .||...+++++.+ .|+++++.-+. ..+++.++|+||+.-
T Consensus 1 ~~-~~~iid~g-~gn~~s~~~al~~-----~g~~~~v~~~~-----------------------~~~~l~~~d~lIlpG 49 (209)
T PRK13146 1 MM-TVAIIDYG-SGNLRSAAKALER-----AGAGADVVVTA-----------------------DPDAVAAADRVVLPG 49 (209)
T ss_pred CC-eEEEEECC-CChHHHHHHHHHH-----cCCCccEEEEC-----------------------CHHHhcCCCEEEECC
Confidence 55 88888754 5777767665553 45533222222 245678999999954
No 97
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=84.73 E-value=5.7 Score=27.29 Aligned_cols=105 Identities=20% Similarity=0.247 Sum_probs=58.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|-+||||+. .| -++-.+.+.+++ .|+++..++-++. ........+|.+++-.|
T Consensus 1 ~ikkvLIan---rG---eia~r~~ra~r~-~Gi~tv~v~s~~d--------------------~~s~~~~~ad~~~~~~~ 53 (110)
T PF00289_consen 1 MIKKVLIAN---RG---EIAVRIIRALRE-LGIETVAVNSNPD--------------------TVSTHVDMADEAYFEPP 53 (110)
T ss_dssp SSSEEEESS----H---HHHHHHHHHHHH-TTSEEEEEEEGGG--------------------TTGHHHHHSSEEEEEES
T ss_pred CCCEEEEEC---CC---HHHHHHHHHHHH-hCCcceeccCchh--------------------cccccccccccceecCc
Confidence 667888874 23 247888889999 8998877776431 23456788888877764
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
.-...-.-.+...++-... . ...+++ .|+ +.-.+ -..+.+.+.+.|+.++|.
T Consensus 54 ~~~~~~yl~~e~I~~ia~~-------~-g~~~i~--pGy-g~lse--~~~fa~~~~~~gi~fiGp 105 (110)
T PF00289_consen 54 GPSPESYLNIEAIIDIARK-------E-GADAIH--PGY-GFLSE--NAEFAEACEDAGIIFIGP 105 (110)
T ss_dssp SSGGGTTTSHHHHHHHHHH-------T-TESEEE--STS-STTTT--HHHHHHHHHHTT-EESSS
T ss_pred chhhhhhccHHHHhhHhhh-------h-cCcccc--ccc-chhHH--HHHHHHHHHHCCCEEECc
Confidence 4332222233444444321 1 222233 232 21122 234556667889988864
No 98
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=83.84 E-value=3.2 Score=31.54 Aligned_cols=43 Identities=16% Similarity=0.375 Sum_probs=29.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
||+||.+. .||...+++++. + .|+++++++ + .+++.++|+||+
T Consensus 2 ~i~iid~g-~gn~~s~~~~l~----~-~g~~~~~v~--~-----------------------~~~~~~~d~iIl 44 (196)
T PRK13170 2 NVVIIDTG-CANLSSVKFAIE----R-LGYEPVVSR--D-----------------------PDVILAADKLFL 44 (196)
T ss_pred eEEEEeCC-CchHHHHHHHHH----H-CCCeEEEEC--C-----------------------HHHhCCCCEEEE
Confidence 78988754 578887777444 4 566776653 1 234667899998
No 99
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=83.01 E-value=10 Score=29.25 Aligned_cols=48 Identities=23% Similarity=0.393 Sum_probs=31.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||.||-+. .||-..+++++. . .|+++.+++. .+++.++|+||+.-|
T Consensus 1 ~~-~v~iid~~-~GN~~sl~~al~----~-~g~~v~vv~~-------------------------~~~l~~~d~iIlPG~ 48 (210)
T CHL00188 1 MM-KIGIIDYS-MGNLHSVSRAIQ----Q-AGQQPCIINS-------------------------ESELAQVHALVLPGV 48 (210)
T ss_pred Cc-EEEEEEcC-CccHHHHHHHHH----H-cCCcEEEEcC-------------------------HHHhhhCCEEEECCC
Confidence 55 78887654 678776666655 3 4667776542 123567999998654
No 100
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=82.53 E-value=24 Score=28.52 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc-CCCCCCCCCCcC-ChhhhccCCeeEEeccccCCcchHHHHHHHH
Q 028917 18 TMAREVQRGANSVLGVEATLWQVPETLSSVILQKM-KAPPKTNDVPVI-RPHQLKEADGFLFGFPSRFGVMAAQCKAFFD 95 (202)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld 95 (202)
.|...++..+++ .|..+.++....... .+.... .+..+ +.... ......++|.||+++|+. ..-.+++
T Consensus 13 liG~s~a~~l~~-~g~~v~i~g~d~~~~-~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~------~~~~~l~ 82 (279)
T COG0287 13 LMGGSLARALKE-AGLVVRIIGRDRSAA-TLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE------ATEEVLK 82 (279)
T ss_pred hHHHHHHHHHHH-cCCeEEEEeecCcHH-HHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH------HHHHHHH
Confidence 477888999998 898888888765321 111111 11111 11101 146678899999999996 5667777
Q ss_pred hhh
Q 028917 96 ATY 98 (202)
Q Consensus 96 ~~~ 98 (202)
++.
T Consensus 83 ~l~ 85 (279)
T COG0287 83 ELA 85 (279)
T ss_pred Hhc
Confidence 773
No 101
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=82.43 E-value=21 Score=28.24 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=55.0
Q ss_pred CCceEEEEEecCCCh--HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhh--hccCCeeE
Q 028917 1 MATKIYIVYYSLYGH--VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQ--LKEADGFL 76 (202)
Q Consensus 1 M~~kiliiy~S~~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~ad~ii 76 (202)
|+.||-|+= -|| |..+++.+++...+..++++.++--.....+++.. +..... =++-|.+|
T Consensus 1 mvvKiGiiK---lGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~~------------~~~~~~~~~~~pDf~i 65 (277)
T PRK00994 1 MVVKIGIIK---LGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEVE------------EVVKKMLEEWKPDFVI 65 (277)
T ss_pred CeEEEEEEE---ecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHHH------------HHHHHHHHhhCCCEEE
Confidence 666888774 444 77899999998877567888777655433322211 001112 25789999
Q ss_pred EeccccCCcchHHHH--HHHHhhhhhhhhccCCCCceEEEEe
Q 028917 77 FGFPSRFGVMAAQCK--AFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 77 ~gsP~y~g~~~~~~k--~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
+.|| |+..|++-+ .++. -.|.|+.+++-
T Consensus 66 ~isP--N~a~PGP~~ARE~l~----------~~~iP~IvI~D 95 (277)
T PRK00994 66 VISP--NPAAPGPKKAREILK----------AAGIPCIVIGD 95 (277)
T ss_pred EECC--CCCCCCchHHHHHHH----------hcCCCEEEEcC
Confidence 9999 566666643 2221 14678877754
No 102
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.22 E-value=10 Score=30.05 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=39.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCC---ceEEEEEccCCCcHHHHhhc-CCCCCCCCCCcCChhhhccCCeeE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLG---VEATLWQVPETLSSVILQKM-KAPPKTNDVPVIRPHQLKEADGFL 76 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g---~~v~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ad~ii 76 (202)
||++|.||= .|+ +...++..+.+ .| .++.+++-.... ....... ... ......+.+.++|.||
T Consensus 1 ~mm~I~iIG---~G~---mG~~la~~l~~-~g~~~~~v~v~~r~~~~-~~~~~~~~g~~-----~~~~~~~~~~~advVi 67 (267)
T PRK11880 1 MMKKIGFIG---GGN---MASAIIGGLLA-SGVPAKDIIVSDPSPEK-RAALAEEYGVR-----AATDNQEAAQEADVVV 67 (267)
T ss_pred CCCEEEEEe---chH---HHHHHHHHHHh-CCCCcceEEEEcCCHHH-HHHHHHhcCCe-----ecCChHHHHhcCCEEE
Confidence 788888872 354 55666666665 55 344444432110 0111110 110 0001223467899999
Q ss_pred EeccccCCcchHHHHHHHHhh
Q 028917 77 FGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 77 ~gsP~y~g~~~~~~k~fld~~ 97 (202)
+++|.+ .++.++..+
T Consensus 68 l~v~~~------~~~~v~~~l 82 (267)
T PRK11880 68 LAVKPQ------VMEEVLSEL 82 (267)
T ss_pred EEcCHH------HHHHHHHHH
Confidence 999865 445555554
No 103
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=82.21 E-value=2.8 Score=35.35 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=30.0
Q ss_pred CceEEEEEecC-CChHHHHHHHHHHHhhccCC---ceEEEEEccC
Q 028917 2 ATKIYIVYYSL-YGHVETMAREVQRGANSVLG---VEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g---~~v~~~~l~~ 42 (202)
||||||+..|- .|| .+.|+++++.+++ .+ ++++++|+-+
T Consensus 5 ~~~vlil~~~~G~GH-~~aA~al~~~~~~-~~~~~~~~~~~D~~~ 47 (391)
T PRK13608 5 NKKILIITGSFGNGH-MQVTQSIVNQLND-MNLDHLSVIEHDLFM 47 (391)
T ss_pred CceEEEEECCCCchH-HHHHHHHHHHHHh-hCCCCceEEEeehHH
Confidence 45899999886 566 6789999999986 43 5677777755
No 104
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=81.06 E-value=18 Score=27.60 Aligned_cols=85 Identities=16% Similarity=0.065 Sum_probs=47.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC-CcHHHHhhcCCCCCCCCCCcC--ChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET-LSSVILQKMKAPPKTNDVPVI--RPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ad~ii~gs 79 (202)
|||.||-.|.. +-..|++.+.. .|.+|+-+-=+.. .+. ....|..+ .|+.+. ..+++...|+||-+.
T Consensus 1 mKIaiIgAsG~-----~Gs~i~~EA~~-RGHeVTAivRn~~K~~~---~~~~~i~q-~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 1 MKIAIIGASGK-----AGSRILKEALK-RGHEVTAIVRNASKLAA---RQGVTILQ-KDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred CeEEEEecCch-----hHHHHHHHHHh-CCCeeEEEEeChHhccc---cccceeec-ccccChhhhHhhhcCCceEEEec
Confidence 38999987753 44466666666 7888875432211 110 01112222 233222 347899999999998
Q ss_pred cccCCcchHHHHHHHHhh
Q 028917 80 PSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~ 97 (202)
-.|+..-......-++.+
T Consensus 71 ~~~~~~~~~~~~k~~~~l 88 (211)
T COG2910 71 GAGASDNDELHSKSIEAL 88 (211)
T ss_pred cCCCCChhHHHHHHHHHH
Confidence 888644433333335444
No 105
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=80.94 E-value=34 Score=29.51 Aligned_cols=50 Identities=18% Similarity=-0.061 Sum_probs=34.0
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCC
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG 121 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~ 121 (202)
...+.++|.+|.+.-..+....+. +.|.-.+. ..+.||++.+++.+-++.
T Consensus 112 ~~~l~~aDlvI~gGG~lfqD~y~~-~~~~y~l~-----A~l~gkpv~l~gqsiGPf 161 (426)
T PRK10017 112 VRLLSGYDAIIQVGGSFFVDLYGV-PQFEHALC-----AFMAKKPLYMIGHSVGPF 161 (426)
T ss_pred HHHHHhCCEEEECCCCccccCccc-HHHHHHHH-----HHHcCCCEEEECCcCCCc
Confidence 346899999999998777665543 34432211 246899998888776554
No 106
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=80.55 E-value=2.6 Score=30.26 Aligned_cols=68 Identities=19% Similarity=0.161 Sum_probs=39.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccC-CceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe-cc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVL-GVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG-FP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g-sP 80 (202)
+||+|+|..-+-.=...+..+++-|++ . |++|. +|.-+..+- + ..+...-....+.++|.||+. ||
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~-~~g~~V~-lD~~~~~~i-------~---~~g~~~W~~~~~~~ad~Vliv~S~ 68 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQ-NCGIDVI-LDQWELNEI-------A---RQGPPRWMERQIREADKVLIVCSP 68 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHh-ccCCcee-ecHHhhccc-------c---cCCHHHHHHHHHhcCCEEEEEecc
Confidence 488998866443335788889999998 6 88875 343321000 0 011111134668899988776 44
Q ss_pred cc
Q 028917 81 SR 82 (202)
Q Consensus 81 ~y 82 (202)
.+
T Consensus 69 ~~ 70 (150)
T PF08357_consen 69 GY 70 (150)
T ss_pred ch
Confidence 44
No 107
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=80.38 E-value=8.9 Score=31.00 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=30.4
Q ss_pred eEEEEEecCC---ChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLY---GHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~---G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||.|+++-++ --+-+-++.+++.+++ .|.++.+++..+
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~ 42 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEK-LGYEVTVFDVDE 42 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHH-cCCeEEEEccCc
Confidence 8999997653 3466778889999998 899999988754
No 108
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=79.85 E-value=19 Score=26.77 Aligned_cols=52 Identities=15% Similarity=0.057 Sum_probs=30.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCC---ceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLG---VEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g---~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
||+|+-.+.... ...+.+-+++ .| .++++++..+. ....++.++|+||+.-.
T Consensus 1 ~i~il~~~~~~~----~~~~~~~l~~-~g~~~~~~~~~~~~~~--------------------~~~~~~~~~dgvil~Gg 55 (188)
T cd01741 1 RILILQHDTPEG----PGLFEDLLRE-AGAETIEIDVVDVYAG--------------------ELLPDLDDYDGLVILGG 55 (188)
T ss_pred CEEEEECCCCCC----cchHHHHHHh-cCCCCceEEEEecCCC--------------------CCCCCcccCCEEEECCC
Confidence 477777665322 2233333333 44 57888777542 12346789999999843
No 109
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=79.34 E-value=9.9 Score=34.50 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=43.6
Q ss_pred ceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~gs 79 (202)
+++++|-.+++| +|...++.+.+.+++ .|.++.+-.=... ... ....+++.+||.||+..
T Consensus 164 ~~i~avtacp~G~aht~mAae~L~~aA~~-~g~~i~vE~~g~~----------------g~~~~lt~~~i~~Ad~Viia~ 226 (631)
T PRK09765 164 PTIVCVTACPAGIAHTYMAAEYLEKAGRK-LGVNVYVEKQGAN----------------GIEGRLTADQLNSATACIFAA 226 (631)
T ss_pred ceEEEEEeCCCcchHHHHHHHHHHHHHHH-CCCeEEEEecCCc----------------CCCCCCCHHHHHhCCEEEEee
Confidence 368888888887 788888999999998 8987664222111 111 02358899999999986
Q ss_pred cc
Q 028917 80 PS 81 (202)
Q Consensus 80 P~ 81 (202)
-+
T Consensus 227 d~ 228 (631)
T PRK09765 227 EV 228 (631)
T ss_pred cC
Confidence 54
No 110
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=79.04 E-value=23 Score=29.13 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCC-CC---------CCCC-cCChhhh
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPP-KT---------NDVP-VIRPHQL 69 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~-~~---------~~~~-~~~~~~l 69 (202)
|||||.|| ..|. +...++..+.+ .|.+|.+++-... .+.+....... .. ..+. ....+.+
T Consensus 1 ~~mkI~Ii---G~G~---mG~~~A~~L~~-~G~~V~~~~r~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (341)
T PRK08229 1 MMARICVL---GAGS---IGCYLGGRLAA-AGADVTLIGRARI--GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAAL 71 (341)
T ss_pred CCceEEEE---CCCH---HHHHHHHHHHh-cCCcEEEEecHHH--HHHHHhcCceeecCCCcceecccceeEeccChhhc
Confidence 78898887 2343 55566666766 7888888875321 11111111000 00 0000 0123456
Q ss_pred ccCCeeEEeccccC
Q 028917 70 KEADGFLFGFPSRF 83 (202)
Q Consensus 70 ~~ad~ii~gsP~y~ 83 (202)
.++|.||+..|.+.
T Consensus 72 ~~~D~vil~vk~~~ 85 (341)
T PRK08229 72 ATADLVLVTVKSAA 85 (341)
T ss_pred cCCCEEEEEecCcc
Confidence 78999999999873
No 111
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=77.98 E-value=7.4 Score=29.84 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=44.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| +|+||-+- .||...+.++ ++. .|.++.+.+ ..+.+..||.|||--
T Consensus 1 m~-~i~IIDyg-~GNL~Sv~~A----ler-~G~~~~vs~-------------------------d~~~i~~AD~liLPG- 47 (204)
T COG0118 1 MM-MVAIIDYG-SGNLRSVKKA----LER-LGAEVVVSR-------------------------DPEEILKADKLILPG- 47 (204)
T ss_pred CC-EEEEEEcC-cchHHHHHHH----HHH-cCCeeEEec-------------------------CHHHHhhCCEEEecC-
Confidence 44 77777532 5777655544 444 566666522 356789999999842
Q ss_pred ccCCcchHHHHHHHHh-hhhhhhhccCCCCceEEEEe
Q 028917 81 SRFGVMAAQCKAFFDA-TYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~-~~~~~~~~~l~gK~~~~~~t 116 (202)
-|..+..|+.+-.+ +..........+||+.-++.
T Consensus 48 --VGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGICl 82 (204)
T COG0118 48 --VGAFGAAMANLRERGLIEAIKEAVESGKPFLGICL 82 (204)
T ss_pred --CCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeH
Confidence 35555555444333 01101112235688777665
No 112
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=77.82 E-value=26 Score=27.41 Aligned_cols=41 Identities=10% Similarity=-0.049 Sum_probs=25.7
Q ss_pred hhccCCeeEEec---cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEE
Q 028917 68 QLKEADGFLFGF---PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFW 115 (202)
Q Consensus 68 ~l~~ad~ii~gs---P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~ 115 (202)
+..+||+|+|-- |.+...-...++.++.+... .||+++.++
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~-------~gK~iaAIC 134 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYA-------NGGVVAAVC 134 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHH-------cCCEEEEEC
Confidence 467999998853 44544445667777776632 456555554
No 113
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.68 E-value=38 Score=27.79 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=32.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++..+|.-..+..+...++...+.+++ .|++++++++.+.
T Consensus 34 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 73 (301)
T PRK14194 34 PALAVILVGNDPASQVYVRNKILRAEE-AGIRSLEHRLPAD 73 (301)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677666666788888999999998 8999999999764
No 114
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=77.35 E-value=37 Score=27.49 Aligned_cols=118 Identities=13% Similarity=0.120 Sum_probs=60.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||.+| ..|+ +...++..+.+ .|.+|.+++............ ... ......+.+.++|.||+..|...
T Consensus 3 ~Ig~I---GlG~---mG~~mA~~l~~-~G~~V~v~d~~~~~~~~~~~~-g~~-----~~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 3 AIAFI---GLGQ---MGSPMASNLLK-QGHQLQVFDVNPQAVDALVDK-GAT-----PAASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred eEEEE---eeCH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHc-CCc-----ccCCHHHHHhcCCEEEEecCCHH
Confidence 77665 2343 55566666666 688888887653211111111 000 00012345688999999999752
Q ss_pred CcchHHHHHHHHhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 84 GVMAAQCKAFFDATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
.++..+.....+. ..+ +|+.+ +-.++.. ......+...+...|..+++.+.
T Consensus 70 -----~~~~vl~~~~~i~--~~l~~g~lv-id~sT~~-----p~~~~~l~~~l~~~g~~~ldapV 121 (296)
T PRK15461 70 -----LVRSVLFGENGVC--EGLSRDALV-IDMSTIH-----PLQTDKLIADMQAKGFSMMDVPV 121 (296)
T ss_pred -----HHHHHHcCcccHh--hcCCCCCEE-EECCCCC-----HHHHHHHHHHHHHcCCcEEEccC
Confidence 3444443221111 122 34432 2222222 23456777788888988876544
No 115
>PRK08727 hypothetical protein; Validated
Probab=76.47 E-value=34 Score=26.64 Aligned_cols=76 Identities=11% Similarity=0.019 Sum_probs=43.1
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
.+++||.+ +|.|. ++.+++..+.+ .|..+.++.+.+... .+. ...+.+.++|.||+===-+.
T Consensus 43 ~l~l~G~~G~GKTh-L~~a~~~~~~~-~~~~~~y~~~~~~~~--------------~~~-~~~~~l~~~dlLiIDDi~~l 105 (233)
T PRK08727 43 WLYLSGPAGTGKTH-LALALCAAAEQ-AGRSSAYLPLQAAAG--------------RLR-DALEALEGRSLVALDGLESI 105 (233)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCcEEEEeHHHhhh--------------hHH-HHHHHHhcCCEEEEeCcccc
Confidence 46677654 78887 66677777777 688888877755211 001 12456777888887533332
Q ss_pred CcchHHHHHHHHhh
Q 028917 84 GVMAAQCKAFFDAT 97 (202)
Q Consensus 84 g~~~~~~k~fld~~ 97 (202)
..-+..-..+++.+
T Consensus 106 ~~~~~~~~~lf~l~ 119 (233)
T PRK08727 106 AGQREDEVALFDFH 119 (233)
T ss_pred cCChHHHHHHHHHH
Confidence 22223334455443
No 116
>PRK10125 putative glycosyl transferase; Provisional
Probab=75.78 E-value=10 Score=32.25 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=33.3
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|||-|..+- .|.+++++..+++.+.+ .|.++.+.-...
T Consensus 2 kil~i~~~l~~GGaeri~~~L~~~l~~-~G~~~~i~~~~~ 40 (405)
T PRK10125 2 NILQFNVRLAEGGAAGVALDLHQRALQ-QGLASHFVYGYG 40 (405)
T ss_pred eEEEEEeeecCCchhHHHHHHHHHHHh-cCCeEEEEEecC
Confidence 899777664 79999999999999998 899999988865
No 117
>PRK13055 putative lipid kinase; Reviewed
Probab=75.63 E-value=6.1 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=29.0
Q ss_pred CCceEEEEEec--CCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYS--LYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S--~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+|+++|+-. ..|...+..+.+.+.+++ .|.+++++...
T Consensus 1 m~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~ 42 (334)
T PRK13055 1 MQKRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTT 42 (334)
T ss_pred CCceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEee
Confidence 77788888843 345566778888888988 88887766543
No 118
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=75.54 E-value=15 Score=28.96 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=39.4
Q ss_pred HHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc--CChhhhccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 21 REVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV--IRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 21 ~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
+.+.+.+.+ .|++|+.+.+.+..|.. .+ +. .........|.|+|.||. .+++|++.+.
T Consensus 136 ~~l~~~L~~-~G~~v~~~~~Y~~~~~~-----------~~-~~~~~~~~~~~~~d~v~ftS~~-------~v~~~~~~~~ 195 (248)
T COG1587 136 EVLEEKLEE-RGAEVREVEVYRTEPPP-----------LD-EATLIELLKLGEVDAVVFTSSS-------AVRALLALAP 195 (248)
T ss_pred HHHHHHHHh-CCCEEEEEeeeeecCCC-----------cc-HHHHHHHHHhCCCCEEEEeCHH-------HHHHHHHHcc
Confidence 567777777 78888887776642210 01 10 013567899999999987 6889998874
No 119
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=74.70 E-value=9.1 Score=28.43 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=32.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+++||- ..+.+...+++.|.+ .|+.+.+.+-.. + ...+.+.+||.||-+++.=
T Consensus 46 ~vlViG-----~G~~~G~~~a~~L~~-~g~~V~v~~r~~-------------------~-~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 46 KVVVVG-----RSNIVGKPLAALLLN-RNATVTVCHSKT-------------------K-NLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred EEEEEC-----CcHHHHHHHHHHHhh-CCCEEEEEECCc-------------------h-hHHHHHhhCCEEEEcCCCC
Confidence 566653 223334445555655 676666655321 1 2456799999999999874
No 120
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=74.20 E-value=22 Score=24.57 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=43.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcH-HHHhhcCCCCCCCCCCcCChhhh---ccCCeeEEe
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSS-VILQKMKAPPKTNDVPVIRPHQL---KEADGFLFG 78 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l---~~ad~ii~g 78 (202)
++..+|....+..+..-++...+.+++ .|++++.+.+.+.... +... ....+ .+-+||++-
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~--------------~i~~lN~D~~V~GIlvq 94 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEK-LGIEFELIELPEDISEEELLE--------------LIEKLNEDPSVHGILVQ 94 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHH-HT-EEEEEEE-TTSSHHHHHH--------------HHHHHHH-TT-SEEEEE
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHH-cCCceEEEECCCCcCHHHHHH--------------HHHHHhCCCCCCEEEEc
Confidence 456777777677788899999999999 8999999999764332 1111 12222 456999999
Q ss_pred ccccCC
Q 028917 79 FPSRFG 84 (202)
Q Consensus 79 sP~y~g 84 (202)
.|...+
T Consensus 95 ~PLP~~ 100 (117)
T PF00763_consen 95 LPLPKH 100 (117)
T ss_dssp SSSSTT
T ss_pred CCCCCC
Confidence 999544
No 121
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=74.10 E-value=13 Score=23.31 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=30.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|-+ +++.-.+...+.+.+.+.+.+ .|+++++++..+
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~-~~i~~ei~~~~~ 38 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEE-LGIEVEIIDIED 38 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHH-TTEEEEEEETTT
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHh-cCCeEEEEEccC
Confidence 6777 666678888999999999888 789999999843
No 122
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.94 E-value=47 Score=27.02 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=32.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 73 (284)
T PRK14179 33 PGLVVILVGDNPASQVYVRNKERSALA-AGFKSEVVRLPETI 73 (284)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356666666666778889999999999 89999999998753
No 123
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=73.87 E-value=19 Score=28.01 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=39.0
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE-eccccCCcchH-HHHHHHHh
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF-GFPSRFGVMAA-QCKAFFDA 96 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~-gsP~y~g~~~~-~~k~fld~ 96 (202)
|-..+++.|++ .|.+|++-.+.+. +.. ...+.|.++|+||+ +... .+.++. +.++|.+.
T Consensus 24 ~~~~~~~~L~~-~gf~V~~~~~~d~----------------~~~-~~~~~L~~~D~lV~~~~~~-~~~l~~eq~~~l~~~ 84 (215)
T cd03142 24 MHGTIAAALAE-YGFDVQTATLDEP----------------EHG-LTEEVLAETDVLLWWGHIA-HDEVKDEIVERVHRR 84 (215)
T ss_pred HHHHHHHHHHh-cCcEEEEEeccCc----------------ccc-CCHhHHhcCCEEEEeCCCC-cCcCCHHHHHHHHHH
Confidence 45567777777 7899886655542 000 12456999999998 3432 455554 67777777
Q ss_pred hh
Q 028917 97 TY 98 (202)
Q Consensus 97 ~~ 98 (202)
+.
T Consensus 85 V~ 86 (215)
T cd03142 85 VL 86 (215)
T ss_pred HH
Confidence 63
No 124
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=73.33 E-value=14 Score=30.16 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=36.3
Q ss_pred ceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
+++.||.+|..| +...+++.+.+.+++ .|.++-++-+.+..| .....+.+.|.+|+.+
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~-~gkk~y~~~~~~i~~------------------~kL~nf~eid~fV~~a 268 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKK-AGKKSYTLSVGEINP------------------AKLANFPEIDAFVQIA 268 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHH-TT-EEEEEEESS--G------------------GGGTTS---SEEEE-S
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHH-cCCEEEEEEECCCCH------------------HHHhcCcccCEEEEec
Confidence 467899988865 567799999999999 899999988877433 1234455777777654
No 125
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=73.25 E-value=47 Score=26.71 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHH---H
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFF---D 95 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fl---d 95 (202)
+...++..+.+ .|.++.+++....... .+....+... + ...+.+.++|.||+..|.. ..++..+ +
T Consensus 7 mG~~mA~~L~~-~G~~V~v~dr~~~~~~-~l~~~g~~~~-~----s~~~~~~~advVil~vp~~-----~~~~~v~~g~~ 74 (288)
T TIGR01692 7 MGGPMAANLLK-AGHPVRVFDLFPDAVE-EAVAAGAQAA-A----SPAEAAEGADRVITMLPAG-----QHVISVYSGDE 74 (288)
T ss_pred hHHHHHHHHHh-CCCeEEEEeCCHHHHH-HHHHcCCeec-C----CHHHHHhcCCEEEEeCCCh-----HHHHHHHcCcc
Confidence 55667777777 7888888876431111 1111111110 0 1234578899999999974 2345555 3
Q ss_pred hhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 96 ATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 96 ~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
.+.. ....|+.+ +-.++-+ ..+...+...+..+|..+++.+.
T Consensus 75 ~l~~----~~~~g~~v-id~st~~-----p~~~~~~~~~~~~~g~~~vdaPv 116 (288)
T TIGR01692 75 GILP----KVAKGSLL-IDCSTID-----PDSARKLAELAAAHGAVFMDAPV 116 (288)
T ss_pred hHhh----cCCCCCEE-EECCCCC-----HHHHHHHHHHHHHcCCcEEECCC
Confidence 3321 11234422 2222211 23456677778888988887544
No 126
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=73.20 E-value=7.2 Score=31.62 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=31.9
Q ss_pred eEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++..+.. |..++.+..+++++.+ .|++|.++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~G~~v~v~~~~~ 40 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQA-AGVDSTMLVQEK 40 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHh-cCCceeEEEeec
Confidence 8999988864 7788889999999998 899998887654
No 127
>PRK00861 putative lipid kinase; Reviewed
Probab=73.13 E-value=10 Score=30.76 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=25.7
Q ss_pred CCceEEEEEe--cCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYY--SLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~--S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++++|+- |..|...+..+.+...+++ +.+++++....
T Consensus 1 ~~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~--~~~~~~~~t~~ 42 (300)
T PRK00861 1 MTRSACLIFNPVAGQGNPEVDLALIRAILEP--EMDLDIYLTTP 42 (300)
T ss_pred CCceEEEEECCCCCCCchhhhHHHHHHHHHh--cCceEEEEccC
Confidence 7778888774 3345556667777777765 35666655443
No 128
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=73.06 E-value=11 Score=29.65 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=11.1
Q ss_pred hhhhccCCeeEEec
Q 028917 66 PHQLKEADGFLFGF 79 (202)
Q Consensus 66 ~~~l~~ad~ii~gs 79 (202)
.+.+.++|+|+++-
T Consensus 74 ~~~l~~ad~I~v~G 87 (233)
T PRK05282 74 VAAIENAEAIFVGG 87 (233)
T ss_pred HHHHhcCCEEEECC
Confidence 46699999988863
No 129
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=72.95 E-value=22 Score=24.50 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=52.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh-ccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL-KEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ad~ii~gsP~ 81 (202)
++|.||=.|.+ ..+.+..+.+.+.+ .|.++..++.......+ ..| ++ ...++ ...|.+++.+|-
T Consensus 1 ksiAVvGaS~~--~~~~g~~v~~~l~~-~G~~v~~Vnp~~~~i~G----~~~------y~--sl~e~p~~iDlavv~~~~ 65 (116)
T PF13380_consen 1 KSIAVVGASDN--PGKFGYRVLRNLKA-AGYEVYPVNPKGGEILG----IKC------YP--SLAEIPEPIDLAVVCVPP 65 (116)
T ss_dssp -EEEEET--SS--TTSHHHHHHHHHHH-TT-EEEEESTTCSEETT----EE-------BS--SGGGCSST-SEEEE-S-H
T ss_pred CEEEEEcccCC--CCChHHHHHHHHHh-CCCEEEEECCCceEECc----EEe------ec--cccCCCCCCCEEEEEcCH
Confidence 35777766753 23355666666666 67666665544311000 000 01 12222 678999999884
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 82 RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
..+-.+++.+.. .|-+.++|.++ . . -.++.+.+..+|+.+++..
T Consensus 66 ------~~~~~~v~~~~~-------~g~~~v~~~~g-~----~---~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 66 ------DKVPEIVDEAAA-------LGVKAVWLQPG-A----E---SEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp ------HHHHHHHHHHHH-------HT-SEEEE-TT-S---------HHHHHHHHHTT-EEEESS
T ss_pred ------HHHHHHHHHHHH-------cCCCEEEEEcc-h----H---HHHHHHHHHHcCCEEEeCC
Confidence 466777777742 25555555432 1 1 2345556778899999643
No 130
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=72.41 E-value=9.9 Score=31.30 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=31.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++|-++|.|..-|...+++.+.+.++. .|.++.-.-+..
T Consensus 160 k~Igv~Y~p~E~ns~~l~eelk~~A~~-~Gl~vve~~v~~ 198 (322)
T COG2984 160 KSIGVLYNPGEANSVSLVEELKKEARK-AGLEVVEAAVTS 198 (322)
T ss_pred eeEEEEeCCCCcccHHHHHHHHHHHHH-CCCEEEEEecCc
Confidence 356677766678999999999999999 898877766654
No 131
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=72.18 E-value=30 Score=28.07 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=43.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCC---CC----CCC--CcCChhhhcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPP---KT----NDV--PVIRPHQLKE 71 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~---~~----~~~--~~~~~~~l~~ 71 (202)
|| ||.|| + .|+ +...++..+.+ .|.+|.+++........ +....... .. ... .....+.+.+
T Consensus 1 mm-kI~ii-G--~G~---mG~~~a~~L~~-~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T PRK00094 1 MM-KIAVL-G--AGS---WGTALAIVLAR-NGHDVTLWARDPEQAAE-INADRENPRYLPGIKLPDNLRATTDLAEALAD 71 (325)
T ss_pred CC-EEEEE-C--CCH---HHHHHHHHHHh-CCCEEEEEECCHHHHHH-HHHcCcccccCCCCcCCCCeEEeCCHHHHHhC
Confidence 65 88776 3 354 55566666666 68888888764311111 11110000 00 001 0011234579
Q ss_pred CCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 72 ADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 72 ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
+|.||+..|.+ .+...++.+.
T Consensus 72 ~D~vi~~v~~~------~~~~v~~~l~ 92 (325)
T PRK00094 72 ADLILVAVPSQ------ALREVLKQLK 92 (325)
T ss_pred CCEEEEeCCHH------HHHHHHHHHH
Confidence 99999999974 4566666553
No 132
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=72.16 E-value=4.9 Score=32.91 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=32.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+++.++..|..+..+..+++.+.+ .|.+|+++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~-~G~~v~v~~~~ 38 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALAR-RGHEVHFITSS 38 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHh-cCCceEEEecC
Confidence 89999877788889999999999999 89999988653
No 133
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=72.06 E-value=41 Score=26.05 Aligned_cols=39 Identities=18% Similarity=0.073 Sum_probs=24.8
Q ss_pred ceEEEEEecC---CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSL---YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~---~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||+|+..|. .|.-..=+-.-...+++ +|++|++.....
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~-aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDR-AGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 4899887653 34422222244667777 899999988643
No 134
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=70.75 E-value=32 Score=27.35 Aligned_cols=46 Identities=28% Similarity=0.380 Sum_probs=28.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|| ||.|+. -.|+...+. +.++. .|+++.+++ ..+++.++|+|||.-
T Consensus 1 ~m-~igVLa--~qG~~~e~~----~aL~~-lG~ev~~v~-------------------------~~~~L~~~DgLILPG 46 (248)
T PLN02832 1 MM-AIGVLA--LQGSFNEHI----AALRR-LGVEAVEVR-------------------------KPEQLEGVSGLIIPG 46 (248)
T ss_pred Cc-EEEEEe--CCCchHHHH----HHHHH-CCCcEEEeC-------------------------CHHHhccCCEEEeCC
Confidence 55 888885 456655554 44444 566655433 135678999999975
No 135
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=70.18 E-value=49 Score=25.65 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=42.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ++.|+ .+|| +-..++..+.. .|+||.+-.-+......-......+.- ... ...+....+|.||++.|
T Consensus 1 m~-~~~i~---GtGn---iG~alA~~~a~-ag~eV~igs~r~~~~~~a~a~~l~~~i-~~~--~~~dA~~~aDVVvLAVP 69 (211)
T COG2085 1 MM-IIAII---GTGN---IGSALALRLAK-AGHEVIIGSSRGPKALAAAAAALGPLI-TGG--SNEDAAALADVVVLAVP 69 (211)
T ss_pred Cc-EEEEe---ccCh---HHHHHHHHHHh-CCCeEEEecCCChhHHHHHHHhhcccc-ccC--ChHHHHhcCCEEEEecc
Confidence 44 66665 3555 55566667776 788888764433111100000000000 000 13456778999999999
Q ss_pred ccCCcchHHHHHHHHh
Q 028917 81 SRFGVMAAQCKAFFDA 96 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~ 96 (202)
-. .+++.++..-|.
T Consensus 70 ~~--a~~~v~~~l~~~ 83 (211)
T COG2085 70 FE--AIPDVLAELRDA 83 (211)
T ss_pred HH--HHHhHHHHHHHH
Confidence 54 334445544443
No 136
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.78 E-value=59 Score=26.43 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=41.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
|||.|| ..|+ +...++..+.+ .|.+|.+++-... . ...+.+.++|.||+..|.
T Consensus 5 m~I~ii---G~G~---~G~~lA~~l~~-~G~~V~~~~r~~~---------------~----~~~~~~~~advvi~~vp~- 57 (308)
T PRK14619 5 KTIAIL---GAGA---WGSTLAGLASA-NGHRVRVWSRRSG---------------L----SLAAVLADADVIVSAVSM- 57 (308)
T ss_pred CEEEEE---CccH---HHHHHHHHHHH-CCCEEEEEeCCCC---------------C----CHHHHHhcCCEEEEECCh-
Confidence 367776 2344 66677777777 7889988876431 0 123456799999999995
Q ss_pred CCcchHHHHHHHHhh
Q 028917 83 FGVMAAQCKAFFDAT 97 (202)
Q Consensus 83 ~g~~~~~~k~fld~~ 97 (202)
..++.+++.+
T Consensus 58 -----~~~~~v~~~l 67 (308)
T PRK14619 58 -----KGVRPVAEQV 67 (308)
T ss_pred -----HHHHHHHHHH
Confidence 2456666665
No 137
>PRK13059 putative lipid kinase; Reviewed
Probab=69.76 E-value=12 Score=30.42 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=28.4
Q ss_pred CCceEEEEE--ecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVY--YSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy--~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+ |+++|+ .|..|...+..+.+.+.+.+ .|.++.++....
T Consensus 1 ~~-~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~ 42 (295)
T PRK13059 1 MK-KVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISL 42 (295)
T ss_pred Cc-EEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccC
Confidence 44 777666 34456666778888999988 888877766643
No 138
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=69.72 E-value=34 Score=25.14 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=31.8
Q ss_pred cCCCCceEEEEecCCCC-CChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 105 ALAGKPAGIFWSTGFHG-GGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 105 ~l~gK~~~~~~t~g~~~-g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
.++||++.++-|+...+ ..+-..|+.+.+.+...|+.|++.+.
T Consensus 22 ~~~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPc 65 (162)
T COG0386 22 DYKGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPC 65 (162)
T ss_pred HhCCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEeccc
Confidence 57899988876654321 23446789999999999999997644
No 139
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=69.64 E-value=38 Score=26.31 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=27.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
||+|+-+-..-....++ +.+++ .|++++++...+ ..+.++|+|||.--
T Consensus 2 ~v~Vl~~~G~n~~~~~~----~al~~-~G~~~~~i~~~~------------------------~~l~~~d~lilpGG 49 (227)
T TIGR01737 2 KVAVIRFPGTNCDRDTV----YALRL-LGVDAEIVWYED------------------------GSLPDYDGVVLPGG 49 (227)
T ss_pred eEEEEeCCCcCcHHHHH----HHHHH-CCCeEEEEecCC------------------------CCCCCCCEEEECCC
Confidence 78887653222223344 44555 688887764322 12568999888763
No 140
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=69.41 E-value=16 Score=26.21 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=31.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|.+|..||.+|.+-+--..|-.++.++.. .|.||.++--
T Consensus 1 ~~~k~~IIl~SG~~dk~~~a~iias~A~A-~G~EV~VF~T 39 (137)
T COG2210 1 MDKKLGIILASGTLDKAYAALIIASGAAA-MGYEVTVFFT 39 (137)
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 56789999999776656666677888888 8999998765
No 141
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=69.19 E-value=23 Score=29.33 Aligned_cols=70 Identities=10% Similarity=0.056 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-CCcchHHHH
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCK 91 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y-~g~~~~~~k 91 (202)
+|.+-..+...++.+++ .|++++++++....|.+ .. .+.+.+.+++.||+.-=-+ .|++.+.+.
T Consensus 209 ~G~~~~~a~eAa~~L~~-~Gi~v~vi~~~~l~Pld-------------~~-~i~~~~~~~~~vv~vEe~~~~gGlg~~la 273 (327)
T PRK09212 209 FSIQVKLALEAAELLEK-EGISVEVIDLRTLRPLD-------------TE-TIIESVKKTNRLVVVEEGWPFAGVGAEIA 273 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCcEEEEEEecCCCCC-------------HH-HHHHHHHhCCeEEEEcCCCCCCCHHHHHH
Confidence 67777788888888888 89999999998754421 00 2356677888877664433 577888888
Q ss_pred HHHHhh
Q 028917 92 AFFDAT 97 (202)
Q Consensus 92 ~fld~~ 97 (202)
.++...
T Consensus 274 ~~l~~~ 279 (327)
T PRK09212 274 ALIMKE 279 (327)
T ss_pred HHHHHh
Confidence 877653
No 142
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=69.18 E-value=38 Score=26.55 Aligned_cols=30 Identities=7% Similarity=-0.234 Sum_probs=19.4
Q ss_pred hhccCCeeEEec---cccCCcchHHHHHHHHhh
Q 028917 68 QLKEADGFLFGF---PSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 68 ~l~~ad~ii~gs---P~y~g~~~~~~k~fld~~ 97 (202)
+..+||+|++-- |.|...-...+..++.+.
T Consensus 93 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f 125 (232)
T cd03148 93 DDSEYAAVFIPGGHGALIGIPESQDVAAALQWA 125 (232)
T ss_pred ChhhceEEEECCCCCChhhcccCHHHHHHHHHH
Confidence 347999998863 455444455566666655
No 143
>PRK15005 universal stress protein F; Provisional
Probab=68.73 E-value=11 Score=26.35 Aligned_cols=41 Identities=17% Similarity=0.085 Sum_probs=29.2
Q ss_pred CCceEEEEE-ecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVY-YSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy-~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+++||+-+ +|.+..+.++.+...+.++. .+.++.++.+-+
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~-~~~~l~ll~v~~ 42 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKI-DDAEVHFLTVIP 42 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhc-cCCeEEEEEEEc
Confidence 777888776 66665566777776666665 677888887754
No 144
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=68.43 E-value=7.8 Score=28.97 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=38.9
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
=++++|++ +|.|. +|.+++..+-+ .|..|.+++..+... .++... .+ .... .....+.++|.+||==
T Consensus 49 ~l~l~G~~G~GKTh-La~ai~~~~~~-~g~~v~f~~~~~L~~--~l~~~~--~~-~~~~-~~~~~l~~~dlLilDD 116 (178)
T PF01695_consen 49 NLILYGPPGTGKTH-LAVAIANEAIR-KGYSVLFITASDLLD--ELKQSR--SD-GSYE-ELLKRLKRVDLLILDD 116 (178)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHH-TT--EEEEEHHHHHH--HHHCCH--CC-TTHC-HHHHHHHTSSCEEEET
T ss_pred EEEEEhhHhHHHHH-HHHHHHHHhcc-CCcceeEeecCceec--cccccc--cc-cchh-hhcCccccccEecccc
Confidence 46777776 78888 45566666655 798899888765211 111110 00 1111 2467889999999864
No 145
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=68.24 E-value=19 Score=26.11 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=44.6
Q ss_pred ceEEEEEecC-----------CCh--HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh
Q 028917 3 TKIYIVYYSL-----------YGH--VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL 69 (202)
Q Consensus 3 ~kiliiy~S~-----------~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 69 (202)
+||+|+++-. ||+ -+.+-+.+.+.+++ .|++++++.-+. ..+.+. .+.+..
T Consensus 2 ~~ilvlNGPNLN~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~--EGelId-------------~I~~a~ 65 (146)
T PRK05395 2 MKILVLNGPNLNLLGTREPEIYGSTTLADIEALLEEEAAE-LGVELEFFQSNH--EGELID-------------RIHEAR 65 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCc--HHHHHH-------------HHHhcc
Confidence 3899998741 453 35667777777777 788888877543 111110 122333
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.++|+||+=.--|. ..|-.+..-+..+
T Consensus 66 ~~~dgiiINpga~T-HtSiAl~DAl~~~ 92 (146)
T PRK05395 66 DGADGIIINPGAYT-HTSVALRDALAAV 92 (146)
T ss_pred cCCcEEEECchHHH-HHHHHHHHHHHcC
Confidence 46899888655542 2233455555444
No 146
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=68.04 E-value=33 Score=25.85 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=28.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+||.+ ..||+..+++.+. + .|+++++++.. .++.++|+||+.-|
T Consensus 1 i~i~d~-g~~~~~~~~~~l~----~-~g~~v~v~~~~-------------------------~~l~~~d~iiipG~ 45 (198)
T cd01748 1 IAIIDY-GMGNLRSVANALE----R-LGAEVIITSDP-------------------------EEILSADKLILPGV 45 (198)
T ss_pred CEEEeC-CCChHHHHHHHHH----H-CCCeEEEEcCh-------------------------HHhccCCEEEECCC
Confidence 345543 2577776665544 4 57778776521 23668999999665
No 147
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=67.54 E-value=11 Score=23.43 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=23.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANS 29 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~ 29 (202)
+||.++-.||++-+..+.++|+++.+.
T Consensus 7 K~IelvGtSp~S~d~Ai~~Ai~RA~~t 33 (71)
T COG3360 7 KKIELVGTSPTSIDAAIANAIARAADT 33 (71)
T ss_pred EEEEEEecCCccHHHHHHHHHHHHHhh
Confidence 468898899999999999999998875
No 148
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=67.29 E-value=33 Score=22.66 Aligned_cols=40 Identities=18% Similarity=-0.022 Sum_probs=28.3
Q ss_pred ChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEE
Q 028917 65 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIF 114 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~ 114 (202)
+...+.++|.||+-+-.-..+....+|..-.+ .++|+...
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk----------~~ip~~~~ 81 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK----------YGIPIIYS 81 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH----------cCCcEEEE
Confidence 56789999999999877666666666654433 47777444
No 149
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.21 E-value=67 Score=26.14 Aligned_cols=40 Identities=10% Similarity=0.263 Sum_probs=32.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++..+|....+..+...++...+.+++ .|++++++++.+.
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 71 (286)
T PRK14184 32 PGLAVILVGEDPASQVYVRNKERACED-AGIVSEAFRLPAD 71 (286)
T ss_pred CEEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 456677666667788889999999999 8999999999864
No 150
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=66.44 E-value=21 Score=27.04 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=29.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
||.|+... |....=+..+.+.+++ .|.+++++.+.+ .+++.++|+|||.-
T Consensus 2 ~i~vl~~~--~~~~e~~~~~~~~l~~-~g~~~~~~~~~~-----------------------~~~l~~~d~iii~G 51 (200)
T PRK13527 2 KIGVLALQ--GDVEEHIDALKRALDE-LGIDGEVVEVRR-----------------------PGDLPDCDALIIPG 51 (200)
T ss_pred EEEEEEEC--CccHHHHHHHHHHHHh-cCCCeEEEEeCC-----------------------hHHhccCCEEEECC
Confidence 55555432 2223334455555666 688888877643 23466899998875
No 151
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.21 E-value=72 Score=26.09 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=32.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++..+|.-..+..+...++...+.+++ .|++++++++.+.
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (294)
T PRK14187 33 PCLIVILVGDDPASQLYVRNKQRKAEM-LGLRSETILLPST 72 (294)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677766677788889999999999 8999999999764
No 152
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=65.96 E-value=25 Score=28.75 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=32.2
Q ss_pred CCceEEEEE--ecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVY--YSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy--~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++.+|| .|..|+-++..+.+.+.+++ .|.++..+-...
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~-~g~~~~~~~t~~ 43 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLLREVEELLEE-AGHELSVRVTEE 43 (301)
T ss_pred CCceEEEEEcccccccchhhHHHHHHHHHHh-cCCeEEEEEeec
Confidence 566887777 44456788999999999999 898887776654
No 153
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=65.84 E-value=56 Score=24.72 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=47.7
Q ss_pred CceEEEEEec----CCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 2 ATKIYIVYYS----LYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 2 ~~kiliiy~S----~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
|+||.||=.= .+|--++.++.+...+.+ .|.+++++...+..+ ........++.+-+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~-~g~~v~Vyc~~~~~~------------------~~~~~y~gv~l~~i 61 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVS-KGIDVTVYCRSDYYP------------------YKEFEYNGVRLVYI 61 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhc-CCceEEEEEccCCCC------------------CCCcccCCeEEEEe
Confidence 4478876421 279999999999999998 899999987765211 12344566777777
Q ss_pred eccccCCcchHHHHHHH
Q 028917 78 GFPSRFGVMAAQCKAFF 94 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fl 94 (202)
.+|. +|......-.++
T Consensus 62 ~~~~-~g~~~si~yd~~ 77 (185)
T PF09314_consen 62 PAPK-NGSAESIIYDFL 77 (185)
T ss_pred CCCC-CCchHHHHHHHH
Confidence 7774 443433333333
No 154
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=65.65 E-value=26 Score=26.04 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe-ccccCCcchHHHH
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG-FPSRFGVMAAQCK 91 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g-sP~y~g~~~~~~k 91 (202)
.++|..+. +.+++ .|++++++++..... ...+++.++|+||+. +|-.... ....+
T Consensus 7 ~~~~~~l~----~~l~~-~~~~~~v~~~~~~~~------------------~~~~~~~~~d~iii~Gg~~~~~d-~~~~~ 62 (192)
T PF00117_consen 7 DSFTHSLV----RALRE-LGIDVEVVRVDSDFE------------------EPLEDLDDYDGIIISGGPGSPYD-IEGLI 62 (192)
T ss_dssp HTTHHHHH----HHHHH-TTEEEEEEETTGGHH------------------HHHHHTTTSSEEEEECESSSTTS-HHHHH
T ss_pred HHHHHHHH----HHHHH-CCCeEEEEECCCchh------------------hhhhhhcCCCEEEECCcCCcccc-ccccc
Confidence 34555444 44555 678899998864100 011257889998876 4554444 45556
Q ss_pred HHHHhh
Q 028917 92 AFFDAT 97 (202)
Q Consensus 92 ~fld~~ 97 (202)
.+++++
T Consensus 63 ~~i~~~ 68 (192)
T PF00117_consen 63 ELIREA 68 (192)
T ss_dssp HHHHHH
T ss_pred cccccc
Confidence 666665
No 155
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=65.46 E-value=74 Score=25.97 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=25.0
Q ss_pred ChhhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 65 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
..+..+++|.+|+=+|- .+.-+...|+|++.+
T Consensus 135 D~EAvk~aei~I~ftPf-G~~t~~Iikki~~~i 166 (342)
T PRK00961 135 DREAVADADIVITWLPK-GGMQPDIIEKFADDI 166 (342)
T ss_pred cHHHhcCCCEEEEecCC-CCCchHHHHHHHhhC
Confidence 35668899999998883 333488889999988
No 156
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=65.16 E-value=11 Score=26.01 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=30.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
+++||. +|++-..|..+++.|++ .|++++++++....|
T Consensus 11 di~iia---~G~~~~~al~A~~~L~~-~Gi~~~vi~~~~i~P 48 (124)
T PF02780_consen 11 DITIIA---YGSMVEEALEAAEELEE-EGIKAGVIDLRTIKP 48 (124)
T ss_dssp SEEEEE---ETTHHHHHHHHHHHHHH-TTCEEEEEEEEEEES
T ss_pred CEEEEe---ehHHHHHHHHHHHHHHH-cCCceeEEeeEEEec
Confidence 456664 67778888889999998 899999999976433
No 157
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=64.77 E-value=26 Score=29.15 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.7
Q ss_pred ceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+++-||.+|..| ++..+++.+.+.+++ .|.++.++-+.+.
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~-~gkk~y~i~~~~i 273 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEE-AGKTVLIILLSNV 273 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCC
Confidence 357888888865 678899999999999 8999988888764
No 158
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=64.50 E-value=27 Score=28.88 Aligned_cols=69 Identities=10% Similarity=0.056 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-CCcchHHHH
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCK 91 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y-~g~~~~~~k 91 (202)
+|++-..|..+++.|++ .|++++++|+....|.+ .. .+.+.+.+...||+.---+ .|++-+.+-
T Consensus 209 ~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~ikPlD-------------~~-~i~~~~~~t~~vv~vEE~~~~gGlG~~va 273 (327)
T CHL00144 209 YSRMRHHVLQAVKVLVE-KGYDPEIIDLISLKPLD-------------LG-TISKSVKKTHKVLIVEECMKTGGIGAELI 273 (327)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCcCCCCC-------------HH-HHHHHHHhhCcEEEEECCCCCCCHHHHHH
Confidence 67777788888888888 89999999998754421 11 1345566666666654333 577766666
Q ss_pred HHHHh
Q 028917 92 AFFDA 96 (202)
Q Consensus 92 ~fld~ 96 (202)
.++-.
T Consensus 274 ~~l~e 278 (327)
T CHL00144 274 AQINE 278 (327)
T ss_pred HHHHH
Confidence 66643
No 159
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.08 E-value=17 Score=29.71 Aligned_cols=37 Identities=16% Similarity=-0.008 Sum_probs=30.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
|++|.|++-....+...+++.+.+.+++ .|+++.+..
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~ 40 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDE 40 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 5579998877788889999999999988 888877654
No 160
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=63.98 E-value=13 Score=30.78 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=30.5
Q ss_pred ceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|||++++-+. .|-.++.+..+++.+.+ .|++|+++-.
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~-~G~~V~v~~~ 38 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQS-RGHEVTIYTS 38 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHh-CCCeEEEEcC
Confidence 3899998665 47788888889999988 8999998865
No 161
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=63.78 E-value=19 Score=27.34 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=23.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|+|+.+|+..+.+.-...+++.+++ .|+.+.++-+.+
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk-~~I~v~vI~~G~ 146 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKK-NNVSVDIINFGE 146 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHH-cCCeEEEEEeCC
Confidence 67888888743333334455566666 677777777665
No 162
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=63.56 E-value=17 Score=29.13 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=31.3
Q ss_pred eEEEEEec-------CCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYS-------LYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S-------~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||++|..+ ..|..++.+..+++.+.+ .|.+|.++....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~-~g~~V~v~~~~~ 46 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVA-RGHEVTLFASGD 46 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHh-cCceEEEEecCC
Confidence 89988754 357788889999999998 899999987654
No 163
>PRK11538 ribosome-associated protein; Provisional
Probab=63.52 E-value=32 Score=23.43 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHH
Q 028917 16 VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFD 95 (202)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld 95 (202)
++.+++.+++.+.+..+-++.++|+.+. -.-+|.+|++|-.-.- .+++..+
T Consensus 3 ~~~~~~~i~~~l~dkKa~DI~vlDv~~~-------------------------~~~~Dy~VIatg~S~r----h~~aia~ 53 (105)
T PRK11538 3 GKALQDFVIDKIDDLKGQDIIALDVQGK-------------------------SSITDCMIICTGTSSR----HVMSIAD 53 (105)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCC-------------------------CcccCEEEEEEeCCHH----HHHHHHH
Confidence 4678888999998866778999998752 1245899999865443 4444444
Q ss_pred hh
Q 028917 96 AT 97 (202)
Q Consensus 96 ~~ 97 (202)
.+
T Consensus 54 ~v 55 (105)
T PRK11538 54 HV 55 (105)
T ss_pred HH
Confidence 44
No 164
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=63.46 E-value=9.7 Score=30.71 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=29.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++|.++|.+...+.....+.+.+.+++ .|+++..+.+.+
T Consensus 132 k~igvl~~~~~~~~~~~~~~~~~~a~~-~g~~l~~~~v~~ 170 (294)
T PF04392_consen 132 KRIGVLYDPSEPNSVAQIEQLRKAAKK-LGIELVEIPVPS 170 (294)
T ss_dssp -EEEEEEETT-HHHHHHHHHHHHHHHH-TT-EEEEEEESS
T ss_pred CEEEEEecCCCccHHHHHHHHHHHHHH-cCCEEEEEecCc
Confidence 468888877777778888888888888 898887777765
No 165
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=63.03 E-value=36 Score=26.92 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=31.9
Q ss_pred eeEEeccccC--CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCc
Q 028917 74 GFLFGFPSRF--GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGM 140 (202)
Q Consensus 74 ~ii~gsP~y~--g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~ 140 (202)
+||+|+..|. |.+++.++.=++....++. .||...++.|+|....+... ...|.+.|..+|.
T Consensus 48 ivVLGa~~~~~~g~ps~~l~~Rl~~A~~LYk----~gk~~~ilvSGg~~~~~~~E-a~~M~~yLi~~GV 111 (239)
T PRK10834 48 GVVLGTAKYYRTGVINQYYRYRIQGAINAYN----SGKVNYLLLSGDNALQSYNE-PMTMRKDLIAAGV 111 (239)
T ss_pred EEEcCCcccCCCCCcCHHHHHHHHHHHHHHH----hCCCCEEEEeCCCCCCCCCH-HHHHHHHHHHcCC
Confidence 6778987763 5566665544444333221 35655566666542221111 2345556655553
No 166
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.83 E-value=46 Score=27.00 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=33.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 31 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 71 (282)
T PRK14169 31 PTLAVVLVGSDPASEVYVRNKQRRAED-IGVRSLMFRLPEAT 71 (282)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356677766677788899999999999 89999999998753
No 167
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=62.63 E-value=51 Score=29.39 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=30.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
++|+||.+. .||...+++++.+ .|+++.+++ + ..++.++|+||+.-
T Consensus 7 ~~i~iiDyG-~GN~~sl~~al~~-----~G~~v~~v~--~-----------------------~~~l~~~D~lIlpG 52 (538)
T PLN02617 7 SEVTLLDYG-AGNVRSVRNAIRH-----LGFTIKDVQ--T-----------------------PEDILNADRLIFPG 52 (538)
T ss_pred CeEEEEECC-CCCHHHHHHHHHH-----CCCeEEEEC--C-----------------------hhhhccCCEEEECC
Confidence 467777654 6888877776664 466665543 1 23467999999965
No 168
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=62.51 E-value=15 Score=30.58 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=28.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCce-EEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVE-ATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~-v~~~~l~~ 42 (202)
+||+|+++|-.+.-...|+++++++++ .|.+ +.+.+...
T Consensus 5 ~rili~t~~~G~GH~~~a~al~~~l~~-~g~~~~~~~d~~~ 44 (380)
T PRK13609 5 PKVLILTAHYGNGHVQVAKTLEQTFRQ-KGIKDVIVCDLFG 44 (380)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHHh-cCCCcEEEEEhHH
Confidence 489999988632446688899999998 7765 55556543
No 169
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.48 E-value=45 Score=27.25 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=33.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|....+..+...++...+.+++ .|+++++++|.+..
T Consensus 33 p~La~i~vg~~~~s~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (296)
T PRK14188 33 PGLAVVLVGEDPASQVYVRSKGKQTKE-AGMASFEHKLPADT 73 (296)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 456777777777788899999999999 89999999997653
No 170
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.36 E-value=41 Score=27.52 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=34.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
+++.+|..+.+..+...++...+.+++ .|++++++++.+...
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~~ 73 (297)
T PRK14167 32 PGLATVLMSDDPASETYVSMKQRDCEE-VGIEAIDVEIDPDAP 73 (297)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCC
Confidence 356777777777888899999999999 899999999987533
No 171
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=62.35 E-value=27 Score=24.46 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=31.6
Q ss_pred CCceEEEEEecCCChHHHHHHH--HHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMARE--VQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~--i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+.+++|+..|..+|.+++..- ++..+.. .|.+|+++-.-+
T Consensus 1 ~~~~v~i~~t~G~~~~~r~ya~f~~A~~a~s-mg~dV~iF~t~d 43 (120)
T COG2044 1 MADKVLIVVTSGPNNPERAYAPFVMATAAAS-MGYDVTIFFTMD 43 (120)
T ss_pred CCceEEEEEecCCCCHHHHHhHHHHHHHHHh-CCCceEEEEEec
Confidence 5668999999999998887764 4555566 788999887654
No 172
>PRK08818 prephenate dehydrogenase; Provisional
Probab=62.13 E-value=19 Score=30.45 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=39.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
++|.||=. +-.|...++..+++..+.+|.-+|..+. ... ...+.+.++|.||+++|+.
T Consensus 5 ~~I~IIGl-----~GliGgslA~alk~~~~~~V~g~D~~d~----------------~~~-~~~~~v~~aDlVilavPv~ 62 (370)
T PRK08818 5 PVVGIVGS-----AGAYGRWLARFLRTRMQLEVIGHDPADP----------------GSL-DPATLLQRADVLIFSAPIR 62 (370)
T ss_pred CEEEEECC-----CCHHHHHHHHHHHhcCCCEEEEEcCCcc----------------ccC-CHHHHhcCCCEEEEeCCHH
Confidence 45666632 2235555666665412556666665331 000 1234578999999999985
Q ss_pred CCcchHHHHHHHHhhh
Q 028917 83 FGVMAAQCKAFFDATY 98 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~ 98 (202)
.+..++..+.
T Consensus 63 ------~~~~~l~~l~ 72 (370)
T PRK08818 63 ------HTAALIEEYV 72 (370)
T ss_pred ------HHHHHHHHHh
Confidence 5566666653
No 173
>PRK05637 anthranilate synthase component II; Provisional
Probab=61.86 E-value=71 Score=24.52 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=21.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
.||++|- .-.|+|..+++.+.+ .|++++++.-
T Consensus 2 ~~il~iD-~~dsf~~nl~~~l~~-----~g~~~~v~~~ 33 (208)
T PRK05637 2 THVVLID-NHDSFVYNLVDAFAV-----AGYKCTVFRN 33 (208)
T ss_pred CEEEEEE-CCcCHHHHHHHHHHH-----CCCcEEEEeC
Confidence 4777775 335888877776654 4667777764
No 174
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=61.77 E-value=53 Score=24.91 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=27.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+|+-+. .||...+++. +++ .|+++++++ + ..++.++|+||+.-|
T Consensus 2 i~~~d~~-~~~~~~i~~~----l~~-~G~~v~~~~--~-----------------------~~~l~~~d~iiipG~ 46 (205)
T PRK13141 2 IAIIDYG-MGNLRSVEKA----LER-LGAEAVITS--D-----------------------PEEILAADGVILPGV 46 (205)
T ss_pred EEEEEcC-CchHHHHHHH----HHH-CCCeEEEEC--C-----------------------HHHhccCCEEEECCC
Confidence 5555443 5676655544 444 577777743 1 245678999999653
No 175
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=61.73 E-value=13 Score=30.57 Aligned_cols=38 Identities=24% Similarity=0.131 Sum_probs=27.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|| ||+|+-+...|+.. .+-.+++.+.+ .|.+|.++-..
T Consensus 1 ~~-~i~i~~~g~gG~~~-~~~~la~~L~~-~g~ev~vv~~~ 38 (357)
T PRK00726 1 MK-KILLAGGGTGGHVF-PALALAEELKK-RGWEVLYLGTA 38 (357)
T ss_pred Cc-EEEEEcCcchHhhh-HHHHHHHHHHh-CCCEEEEEECC
Confidence 64 88887654456655 66678888888 79999887654
No 176
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=61.62 E-value=44 Score=28.02 Aligned_cols=74 Identities=9% Similarity=-0.018 Sum_probs=49.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-C
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR-F 83 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y-~ 83 (202)
++||. +|++-..|..+++.|++ .|++++++++....|.+ .. .+.+.+.+++.||+.-=-+ .
T Consensus 231 vtIia---~G~~v~~Al~Aa~~L~~-~GI~v~VId~~~ikPlD-------------~~-~l~~~~~~t~~vvtvEE~~~~ 292 (356)
T PLN02683 231 VTIVA---FSKMVGYALKAAEILAK-EGISAEVINLRSIRPLD-------------RD-TINASVRKTNRLVTVEEGWPQ 292 (356)
T ss_pred EEEEE---ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCccC-------------HH-HHHHHHhhcCeEEEEeCCCcC
Confidence 44543 67777788888888888 89999999998754421 00 2345566777766664322 4
Q ss_pred CcchHHHHHHHHh
Q 028917 84 GVMAAQCKAFFDA 96 (202)
Q Consensus 84 g~~~~~~k~fld~ 96 (202)
|++-+.+..++-.
T Consensus 293 GGlGs~Va~~l~e 305 (356)
T PLN02683 293 HGVGAEICASVVE 305 (356)
T ss_pred CCHHHHHHHHHHH
Confidence 6677777766644
No 177
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.43 E-value=47 Score=27.18 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=32.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++.++|....+..+...++...+.+++ .|++++++++.+.
T Consensus 33 p~LaiI~vgdd~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (297)
T PRK14186 33 PGLAVLRVGDDPASAVYVRNKEKACAR-VGIASFGKHLPAD 72 (297)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677766677788889999999999 8999999999764
No 178
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=61.16 E-value=96 Score=25.81 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEeccc
Q 028917 18 TMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gsP~ 81 (202)
.+...++..+.+ .|.++.+.+-............ +... ...+.+.++|.|++..|.
T Consensus 27 smG~AlA~~L~~-sG~~Vvv~~r~~~~s~~~A~~~-------G~~~~s~~eaa~~ADVVvLaVPd 83 (330)
T PRK05479 27 SQGHAHALNLRD-SGVDVVVGLREGSKSWKKAEAD-------GFEVLTVAEAAKWADVIMILLPD 83 (330)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCchhhHHHHHHC-------CCeeCCHHHHHhcCCEEEEcCCH
Confidence 377788888888 8887766543321111111110 1100 124557889999999994
No 179
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=61.00 E-value=23 Score=25.48 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 14 GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 14 G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
|.+..+.+.++..+.+ .|+.|.+.+-... ...+.+.+||.||-+++.-
T Consensus 35 Grs~~vG~pla~lL~~-~gatV~~~~~~t~--------------------~l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 35 GRSGIVGAPLQCLLQR-DGATVYSCDWKTI--------------------QLQSKVHDADVVVVGSPKP 82 (140)
T ss_pred CCCchHHHHHHHHHHH-CCCEEEEeCCCCc--------------------CHHHHHhhCCEEEEecCCC
Confidence 3344455566666666 6777777654321 1356789999999998876
No 180
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=60.71 E-value=83 Score=24.91 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=33.3
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
.+.+.++|.||+++|+- .+..+++.+.. .+ .+-..++-+ ++. ....+..+...+. .+..+++
T Consensus 40 ~~~~~~~DlvvlavP~~------~~~~~l~~~~~-----~~-~~~~iv~Dv-~Sv---K~~~~~~~~~~~~-~~~~~v~ 101 (258)
T PF02153_consen 40 IEAVEDADLVVLAVPVS------AIEDVLEEIAP-----YL-KPGAIVTDV-GSV---KAPIVEAMERLLP-EGVRFVG 101 (258)
T ss_dssp HHHGGCCSEEEE-S-HH------HHHHHHHHHHC-----GS--TTSEEEE---S----CHHHHHHHHHHHT-SSGEEEE
T ss_pred HhHhcCCCEEEEcCCHH------HHHHHHHHhhh-----hc-CCCcEEEEe-CCC---CHHHHHHHHHhcC-cccceee
Confidence 46789999999999984 57778877742 22 222333333 332 2233444444443 5667775
No 181
>PRK13054 lipid kinase; Reviewed
Probab=60.68 E-value=18 Score=29.39 Aligned_cols=38 Identities=11% Similarity=-0.083 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
||+|+++||- +.+...+....+.+.+.+ .|.+++++.-
T Consensus 2 ~~~~~~~i~N-~~~~~~~~~~~~~~~l~~-~g~~~~v~~t 39 (300)
T PRK13054 2 TFPKSLLILN-GKSAGNEELREAVGLLRE-EGHTLHVRVT 39 (300)
T ss_pred CCceEEEEEC-CCccchHHHHHHHHHHHH-cCCEEEEEEe
Confidence 5567777664 444344555566777887 7888776444
No 182
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=60.40 E-value=27 Score=26.30 Aligned_cols=47 Identities=30% Similarity=0.381 Sum_probs=28.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||.|+... ||-....+. ++. .|+++..++. .+++.++|+||+.-.
T Consensus 1 ~m-~~~i~~~~--g~~~~~~~~----l~~-~g~~~~~~~~-------------------------~~~l~~~dgiii~GG 47 (189)
T PRK13525 1 MM-KIGVLALQ--GAVREHLAA----LEA-LGAEAVEVRR-------------------------PEDLDEIDGLILPGG 47 (189)
T ss_pred CC-EEEEEEcc--cCHHHHHHH----HHH-CCCEEEEeCC-------------------------hhHhccCCEEEECCC
Confidence 45 88888744 444433333 454 5766655431 234678999998753
No 183
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=60.24 E-value=8.6 Score=27.96 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=24.6
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecC
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTG 118 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g 118 (202)
.+-+.++|.||++.|.+ .++.+++++.. .++.....++.+-|
T Consensus 64 ~~a~~~ad~IiiavPs~------~~~~~~~~l~~-----~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 64 EEALEDADIIIIAVPSQ------AHREVLEQLAP-----YLKKGQIIISATKG 105 (157)
T ss_dssp HHHHTT-SEEEE-S-GG------GHHHHHHHHTT-----TSHTT-EEEETS-S
T ss_pred HHHhCcccEEEecccHH------HHHHHHHHHhh-----ccCCCCEEEEecCC
Confidence 35678999999999997 46788888853 34334344444434
No 184
>PRK06444 prephenate dehydrogenase; Provisional
Probab=60.06 E-value=16 Score=27.87 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=18.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEAT 36 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~ 36 (202)
||.||=+ +-++.+.++..+++ .|.+|.
T Consensus 2 ~~~iiG~-----~G~mG~~~~~~~~~-~g~~v~ 28 (197)
T PRK06444 2 MEIIIGK-----NGRLGRVLCSILDD-NGLGVY 28 (197)
T ss_pred EEEEEec-----CCcHHHHHHHHHHh-CCCEEE
Confidence 6777743 23467778888887 786653
No 185
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=59.84 E-value=30 Score=27.25 Aligned_cols=76 Identities=24% Similarity=0.210 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 18 TMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.-+...++.+++ .|.++..+.+-+..|.. +++ .....+.++|.|+|.||. .++.|++++
T Consensus 11 ~~~~~~~~~l~~-~G~~~~~~P~i~~~~~~------------~l~-~~l~~l~~~d~vvfTS~~-------av~~~~~~l 69 (248)
T COG1587 11 EQAEELAALLRK-AGAEPLELPLIEIEPLP------------DLE-VALEDLDSADWVVFTSPN-------AVRFFFEAL 69 (248)
T ss_pred hhhHHHHHHHHh-CCCcceeecceeeecch------------hHH-HHHhccccCCEEEEECHH-------HHHHHHHHH
Confidence 345566666777 78766655554332210 011 235566669999999986 678888887
Q ss_pred hhhhhhccCCCCceEEEE
Q 028917 98 YELWASQALAGKPAGIFW 115 (202)
Q Consensus 98 ~~~~~~~~l~gK~~~~~~ 115 (202)
...... .++++++++++
T Consensus 70 ~~~~~~-~~~~~~i~aVG 86 (248)
T COG1587 70 KEQGLD-ALKNKKIAAVG 86 (248)
T ss_pred Hhhccc-ccccCeEEEEc
Confidence 542111 34466665554
No 186
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.43 E-value=96 Score=25.25 Aligned_cols=41 Identities=10% Similarity=0.116 Sum_probs=33.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 33 p~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 73 (285)
T PRK14189 33 PGLAVILVGDNPASQVYVRNKVKACED-NGFHSLKDRYPADL 73 (285)
T ss_pred CeEEEEEeCCCchHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 456677766677788889999999999 89999999998753
No 187
>PRK12377 putative replication protein; Provisional
Probab=59.38 E-value=87 Score=24.83 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=40.3
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
-++++|.+ +|-|. +|.+|+..+.+ .|..|.++.+.+.... +....-. . .... .....+.++|.|||--
T Consensus 103 ~l~l~G~~GtGKTh-La~AIa~~l~~-~g~~v~~i~~~~l~~~--l~~~~~~-~-~~~~-~~l~~l~~~dLLiIDD 171 (248)
T PRK12377 103 NFVFSGKPGTGKNH-LAAAIGNRLLA-KGRSVIVVTVPDVMSR--LHESYDN-G-QSGE-KFLQELCKVDLLVLDE 171 (248)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCCeEEEEHHHHHHH--HHHHHhc-c-chHH-HHHHHhcCCCEEEEcC
Confidence 46777765 78877 77777878777 7888888877652111 1100000 0 0001 1356789999999764
No 188
>PRK13566 anthranilate synthase; Provisional
Probab=59.19 E-value=61 Score=30.06 Aligned_cols=34 Identities=21% Similarity=0.146 Sum_probs=21.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++|+||-+- .+++..+++. +++ .|+++++++...
T Consensus 527 ~~IlvID~~-dsf~~~l~~~----Lr~-~G~~v~vv~~~~ 560 (720)
T PRK13566 527 KRVLLVDHE-DSFVHTLANY----FRQ-TGAEVTTVRYGF 560 (720)
T ss_pred CEEEEEECC-CchHHHHHHH----HHH-CCCEEEEEECCC
Confidence 368877644 4555555544 455 688888887754
No 189
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=59.11 E-value=23 Score=27.15 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=44.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
.+.++|.++..++..++..+.+.+++ .+++....-+... |......+-...+|.+|+-+-.++
T Consensus 130 ~vi~L~d~~vs~SGel~~~i~~~mK~-~~I~g~~~lvk~~----------------D~eLk~~e~VaTsD~~IIdsv~~v 192 (211)
T COG2454 130 SVIFLFDAPVSKSGELAGRIEEKMKS-LGIPGEASLVKNA----------------DFELKELEVVATSDSGIIDSVKRV 192 (211)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHh-cCCCceeEeccCc----------------CHHHHhcCceeecCeeeeeehhHH
Confidence 45667777788888888888888887 6766554444321 110001335678899999886666
Q ss_pred CcchHHH
Q 028917 84 GVMAAQC 90 (202)
Q Consensus 84 g~~~~~~ 90 (202)
-.+|..+
T Consensus 193 Vdi~~~i 199 (211)
T COG2454 193 VDIPAEI 199 (211)
T ss_pred HhhHHHH
Confidence 5555443
No 190
>PRK04155 chaperone protein HchA; Provisional
Probab=59.10 E-value=82 Score=25.60 Aligned_cols=39 Identities=13% Similarity=0.034 Sum_probs=24.2
Q ss_pred ceEEEEEecC------------CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSL------------YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~------------~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|||||..|. +|+-..=+-.-...+++ +|++|++..+..
T Consensus 50 kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~-AG~eVdiAS~~G 100 (287)
T PRK04155 50 KKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHK-AGFEFDVATLSG 100 (287)
T ss_pred CeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 4899888764 22211112233566777 899999998754
No 191
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=59.04 E-value=8.6 Score=25.81 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=32.5
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
.+.|+++.- ...+-+-...+++++.. +||++.+++..++. +..++...|...|+.+-
T Consensus 3 ~D~dGvl~~----g~~~ipga~e~l~~L~~-------~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 3 FDLDGVLYN----GNEPIPGAVEALDALRE-------RGKPVVFLTNNSSR------SREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EESTTTSEE----TTEE-TTHHHHHHHHHH-------TTSEEEEEES-SSS-------HHHHHHHHHHTTTT--
T ss_pred EeCccEeEe----CCCcCcCHHHHHHHHHH-------cCCCEEEEeCCCCC------CHHHHHHHHHhcCcCCC
Confidence 345666553 22233345889998842 68998887765442 23455667777787643
No 192
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=58.89 E-value=14 Score=26.50 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=19.6
Q ss_pred CCceEEEEEecCCChH--HHHHHHHHHHhhc
Q 028917 1 MATKIYIVYYSLYGHV--ETMAREVQRGANS 29 (202)
Q Consensus 1 M~~kiliiy~S~~G~T--~~la~~i~~~~~~ 29 (202)
||+||+.|. +||+ ..||+.+.+.+..
T Consensus 1 ~~~kVLFVC---~gN~cRSpmAE~l~~~~~~ 28 (139)
T COG0394 1 MMMKVLFVC---TGNICRSPMAEALLRHLAP 28 (139)
T ss_pred CCceEEEEc---CCCcccCHHHHHHHHHhcc
Confidence 677999987 5554 5688888888754
No 193
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=58.89 E-value=34 Score=21.37 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=27.0
Q ss_pred EEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 8 VYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 8 iy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|++--++.+.+...+.+.+++ .|.+++++++.+
T Consensus 5 ~~a~~C~~C~~~~~~~~~~~~e-~~~~~~~~~v~~ 38 (76)
T TIGR00412 5 IYGTGCANCQMTEKNVKKAVEE-LGIDAEFEKVTD 38 (76)
T ss_pred EECCCCcCHHHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 3655578999999888888888 777888888864
No 194
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=58.85 E-value=93 Score=24.92 Aligned_cols=78 Identities=9% Similarity=0.058 Sum_probs=40.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCc----eEEEEEccCCCcHHHHhh-cCCCCCCCCCCcCChhhhccCCee
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGV----EATLWQVPETLSSVILQK-MKAPPKTNDVPVIRPHQLKEADGF 75 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~----~v~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ad~i 75 (202)
|.+||.+| ..|| |+..++.++.+ .|. ++..++.... ....... ...... + ...+.+.++|.|
T Consensus 1 ~~~~IgfI---G~G~---MG~aia~~L~~-~g~~~~~~I~v~~r~~~-~~~~l~~~~g~~~~-~----~~~e~~~~aDiI 67 (272)
T PRK12491 1 MNKQIGFI---GCGN---MGIAMIGGMIN-KNIVSPDQIICSDLNVS-NLKNASDKYGITIT-T----NNNEVANSADIL 67 (272)
T ss_pred CCCeEEEE---CccH---HHHHHHHHHHH-CCCCCCceEEEECCCHH-HHHHHHHhcCcEEe-C----CcHHHHhhCCEE
Confidence 66787776 3565 77778888776 553 3433332110 0011111 111000 0 123346799999
Q ss_pred EEeccccCCcchHHHHHHHHhh
Q 028917 76 LFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 76 i~gsP~y~g~~~~~~k~fld~~ 97 (202)
|++.|.+ .+..+++.+
T Consensus 68 iLavkP~------~~~~vl~~l 83 (272)
T PRK12491 68 ILSIKPD------LYSSVINQI 83 (272)
T ss_pred EEEeChH------HHHHHHHHH
Confidence 9999853 455555555
No 195
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=58.71 E-value=50 Score=27.73 Aligned_cols=69 Identities=10% Similarity=0.009 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe-ccccCCcchHHHH
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG-FPSRFGVMAAQCK 91 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g-sP~y~g~~~~~~k 91 (202)
+|.+-..+...++.+++ .|++++++++....|.+. . .+.+.+..++.||+. -....|++...+.
T Consensus 241 ~Gs~~~~aleAa~~L~~-~Gi~v~vI~~~~l~Pld~-------------e-~i~~~~~~~~~IvvvEE~~~~GGlG~~Va 305 (355)
T PTZ00182 241 YGSQVHVALKAAEELAK-EGISCEVIDLRSLRPWDR-------------E-TIVKSVKKTGRCVIVHEAPPTCGIGAEIA 305 (355)
T ss_pred eCHHHHHHHHHHHHHHh-CCCcEEEEEEeeCCCCCH-------------H-HHHHHHhcCCEEEEEEeCCCCCCHHHHHH
Confidence 56777777777888887 799999999987544210 0 134455666666554 2333566666666
Q ss_pred HHHHh
Q 028917 92 AFFDA 96 (202)
Q Consensus 92 ~fld~ 96 (202)
.++-.
T Consensus 306 ~~l~e 310 (355)
T PTZ00182 306 AQIME 310 (355)
T ss_pred HHHHH
Confidence 55543
No 196
>PRK08939 primosomal protein DnaI; Reviewed
Probab=58.59 E-value=14 Score=30.36 Aligned_cols=66 Identities=18% Similarity=0.267 Sum_probs=39.4
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
=+++||++ +|-|. |+.+++..+.+ .|..|.++.+.+... ...... .+.... .....+.++|.+||=
T Consensus 158 gl~L~G~~G~GKTh-La~Aia~~l~~-~g~~v~~~~~~~l~~-~lk~~~----~~~~~~-~~l~~l~~~dlLiID 224 (306)
T PRK08939 158 GLYLYGDFGVGKSY-LLAAIANELAK-KGVSSTLLHFPEFIR-ELKNSI----SDGSVK-EKIDAVKEAPVLMLD 224 (306)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCCEEEEEHHHHHH-HHHHHH----hcCcHH-HHHHHhcCCCEEEEe
Confidence 46778765 78887 55577777766 798898888765211 010000 001111 235678899999964
No 197
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=58.51 E-value=11 Score=29.95 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=40.1
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEec
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGF 79 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gs 79 (202)
=+++||.+ +|-|. ||-+|+..+-. .|..|.++.+.+.... ..... . ++..+ .+...+..+|.+||==
T Consensus 107 nl~l~G~~G~GKTh-La~Ai~~~l~~-~g~sv~f~~~~el~~~-Lk~~~----~-~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 107 NLVLLGPPGVGKTH-LAIAIGNELLK-AGISVLFITAPDLLSK-LKAAF----D-EGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cEEEECCCCCcHHH-HHHHHHHHHHH-cCCeEEEEEHHHHHHH-HHHHH----h-cCchHHHHHHHhhcCCEEEEec
Confidence 46778776 78887 55556666656 7999999998773211 00000 0 11111 1244599999999854
No 198
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.39 E-value=57 Score=26.54 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=32.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++..+|....+..+...++...+.+++ .|++++++++.+.
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 73 (285)
T PRK10792 34 PGLAVVLVGSDPASQVYVASKRKACEE-VGFVSRSYDLPET 73 (285)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356666666666788889999999999 8999999999864
No 199
>PRK11914 diacylglycerol kinase; Reviewed
Probab=58.31 E-value=23 Score=28.76 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=27.4
Q ss_pred ceEEEEEe--cCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYY--SLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~--S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+|+++|+- |..|...+..+.+.+.+++ .|.++.++..
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t 47 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVG 47 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 47887773 4466777888888889988 8887776544
No 200
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.20 E-value=18 Score=28.15 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=10.7
Q ss_pred CCceEEEEEecCCC
Q 028917 1 MATKIYIVYYSLYG 14 (202)
Q Consensus 1 M~~kiliiy~S~~G 14 (202)
|| ||+|+|.-.+|
T Consensus 1 ~m-ki~vlt~g~yG 13 (224)
T COG1810 1 MM-KILVLTDGEYG 13 (224)
T ss_pred Cc-EEEEEeeccch
Confidence 55 99999987777
No 201
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.17 E-value=58 Score=26.47 Aligned_cols=41 Identities=12% Similarity=0.247 Sum_probs=33.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++.++|.-..+..+...++...+.+++ .|++++++++.+..
T Consensus 32 P~La~I~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 72 (282)
T PRK14180 32 PKLVAIIVGNDPASKTYVASKEKACAQ-VGIDSQVITLPEHT 72 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 456777767777788899999999999 89999999998753
No 202
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=57.88 E-value=14 Score=30.41 Aligned_cols=58 Identities=12% Similarity=0.112 Sum_probs=36.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
|++.|+..|..| ..+++.+++.+.. . ++....... +++.+...+.+.+||.+||..++
T Consensus 4 m~iaii~~t~~G--~~la~~l~~~l~~-~-----~~~~~~~~~-------------~~~~~~~~~~f~~~d~iIfI~A~ 61 (315)
T PRK05788 4 MKIAIICATERG--RDLAERLKAKLKA-D-----CYTSEKLEY-------------EGFADAFEEAFGCYDALIFIMAT 61 (315)
T ss_pred ceEEEEEECccH--HHHHHHHHHhccc-c-----eecchhhcc-------------CCHHHHHHHHHhcCCeEEEEECh
Confidence 489999988877 7788888888864 1 222211100 01111245667889999988664
No 203
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=57.85 E-value=1.3e+02 Score=26.14 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=62.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh-ccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL-KEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ad~ii~gsP~ 81 (202)
++|.||=.|.+ ..++...+.+.+.+ .|..-+++.++..... +....|.. ..+++ ..-|..|+..|
T Consensus 8 ~siavvGaS~~--~~~~g~~~~~~l~~-~gf~g~v~~Vnp~~~~--i~G~~~~~--------sl~~lp~~~Dlavi~vp- 73 (447)
T TIGR02717 8 KSVAVIGASRD--PGKVGYAIMKNLIE-GGYKGKIYPVNPKAGE--ILGVKAYP--------SVLEIPDPVDLAVIVVP- 73 (447)
T ss_pred CEEEEEccCCC--CCchHHHHHHHHHh-CCCCCcEEEECCCCCc--cCCccccC--------CHHHCCCCCCEEEEecC-
Confidence 35777766753 12344555555555 5654455555432110 00111111 12223 34699999998
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCCh-HHH-HHHHHHHHHHcCcEEecCC
Q 028917 82 RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQ-ELT-ALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~-~~~-l~~~~~~l~~~g~~vv~~~ 146 (202)
+..+...++.+. . .|-+.+++.+.|....+. ... -..+.+.....|+.+++..
T Consensus 74 -----~~~~~~~l~e~~------~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPn 128 (447)
T TIGR02717 74 -----AKYVPQVVEECG------E-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPN 128 (447)
T ss_pred -----HHHHHHHHHHHH------h-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecC
Confidence 345666666663 2 455566666666532222 122 2567777888999999754
No 204
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=57.81 E-value=44 Score=25.24 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=28.8
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
+|+-++..||...+ ...++. .|+++++++..+ ++.++|+|||+-..
T Consensus 2 ~~~~y~~~gN~~~l----~~~~~~-~G~~~~~~~~~~-------------------------~~~~~d~lilpGg~ 47 (194)
T cd01750 2 AVIRYPDISNFTDL----DPLARE-PGVDVRYVEVPE-------------------------GLGDADLIILPGSK 47 (194)
T ss_pred EeecCCCccCHHHH----HHHHhc-CCceEEEEeCCC-------------------------CCCCCCEEEECCCc
Confidence 44445557776543 444555 688888877542 15678999987654
No 205
>PRK06893 DNA replication initiation factor; Validated
Probab=57.55 E-value=52 Score=25.49 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=25.1
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.+++||.+ +|.|. ++.+++..+.. .+..+.++.+.+
T Consensus 41 ~l~l~G~~G~GKTh-L~~ai~~~~~~-~~~~~~y~~~~~ 77 (229)
T PRK06893 41 FFYIWGGKSSGKSH-LLKAVSNHYLL-NQRTAIYIPLSK 77 (229)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCCeEEeeHHH
Confidence 46777665 78887 77777777765 566777777753
No 206
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=57.25 E-value=53 Score=23.71 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=46.5
Q ss_pred EEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 5 IYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 5 iliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
=+++|.||+ |....-+ +.++. .|++|......+... ++. .+ .++.++..|...||.--..-
T Consensus 27 ~~~vyksPnCGCC~~w~----~~mk~-~Gf~Vk~~~~~d~~a---lK~--------~~--gIp~e~~SCHT~VI~Gy~vE 88 (149)
T COG3019 27 EMVVYKSPNCGCCDEWA----QHMKA-NGFEVKVVETDDFLA---LKR--------RL--GIPYEMQSCHTAVINGYYVE 88 (149)
T ss_pred eEEEEeCCCCccHHHHH----HHHHh-CCcEEEEeecCcHHH---HHH--------hc--CCChhhccccEEEEcCEEEe
Confidence 357899996 8766544 44555 799999888766311 110 11 25678899999999988888
Q ss_pred CcchHH
Q 028917 84 GVMAAQ 89 (202)
Q Consensus 84 g~~~~~ 89 (202)
|.+|..
T Consensus 89 GHVPa~ 94 (149)
T COG3019 89 GHVPAE 94 (149)
T ss_pred ccCCHH
Confidence 999975
No 207
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=56.88 E-value=41 Score=22.25 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=26.4
Q ss_pred EEEEecCCCh--HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 6 YIVYYSLYGH--VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 6 liiy~S~~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.+.+.|.+|+ |++=.+.+..-|.. .+++.+-+|+..
T Consensus 3 ~vY~ts~~g~~~~k~~~~~v~~lL~~-k~I~f~eiDI~~ 40 (92)
T cd03030 3 KVYIASSSGSTEIKKRQQEVLGFLEA-KKIEFEEVDISM 40 (92)
T ss_pred EEEEecccccHHHHHHHHHHHHHHHH-CCCceEEEecCC
Confidence 3444566786 55666778888888 899999999875
No 208
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.86 E-value=61 Score=26.37 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=31.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+++.+|....+..+...++...+.+++ .|++++++++.+.
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 72 (284)
T PRK14190 33 PGLAVILVGDDPASHSYVRGKKKAAEK-VGIYSELYEFPAD 72 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356666666666778888888999998 8999999999875
No 209
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=56.72 E-value=90 Score=24.10 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=26.7
Q ss_pred eEEEEEecCCChHHH-HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSLYGHVET-MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~-la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
||+|+.+-. .|++. +.+++.+ . .|+++..+...+ .++.++|+|||.-
T Consensus 2 ~v~Vl~~~G-~n~~~d~~~a~~~---~-~G~~~~~v~~~~------------------------~~l~~~D~lvipG 49 (219)
T PRK03619 2 KVAVIVFPG-SNCDRDMARALRD---L-LGAEPEYVWHKE------------------------TDLDGVDAVVLPG 49 (219)
T ss_pred EEEEEecCC-cChHHHHHHHHHh---c-CCCeEEEEecCc------------------------CCCCCCCEEEECC
Confidence 788777554 33332 4444332 4 677766554321 2356889988874
No 210
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=56.65 E-value=30 Score=28.51 Aligned_cols=40 Identities=8% Similarity=0.063 Sum_probs=31.4
Q ss_pred CceEEEEEecCCC---hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYG---HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||.|++|..+. -+-+=++.+.+.|.+ .|.++..+++..
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~-~~~~~~~~~~~~ 45 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDK-EKYEVVPIGITK 45 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcc-cCCEEEEEEECC
Confidence 5579999987643 244677889999988 899999998865
No 211
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=56.33 E-value=19 Score=30.33 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=36.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
++|.||-+. | .|...++..+.+ .|.+|.+++..+. . ...+.+.++|.||+++|+.
T Consensus 99 ~~I~IiGG~--G---lmG~slA~~l~~-~G~~V~~~d~~~~------------------~-~~~~~~~~aDlVilavP~~ 153 (374)
T PRK11199 99 RPVVIVGGK--G---QLGRLFAKMLTL-SGYQVRILEQDDW------------------D-RAEDILADAGMVIVSVPIH 153 (374)
T ss_pred ceEEEEcCC--C---hhhHHHHHHHHH-CCCeEEEeCCCcc------------------h-hHHHHHhcCCEEEEeCcHH
Confidence 467776323 2 355567777777 7888888886431 0 1234467899999999986
No 212
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=56.32 E-value=41 Score=25.80 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=16.9
Q ss_pred ChhhhccCCeeEEeccccCCcchHHHHHH
Q 028917 65 RPHQLKEADGFLFGFPSRFGVMAAQCKAF 93 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~~~~~~k~f 93 (202)
..+.+.+||+|+++- |+....++.|
T Consensus 74 ~~~~l~~ad~I~l~G----G~~~~~~~~l 98 (212)
T cd03146 74 PLDALLEADVIYVGG----GNTFNLLAQW 98 (212)
T ss_pred HHHHHhcCCEEEECC----chHHHHHHHH
Confidence 367899999999975 4444444433
No 213
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.28 E-value=63 Score=26.33 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=32.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++..+|.-..+..+...++...+.+++ .|++++++++.+.
T Consensus 39 P~Laii~vg~d~aS~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 78 (287)
T PRK14176 39 PGLATILVGDDPASKMYVRLKHKACER-VGIRAEDQFLPAD 78 (287)
T ss_pred CeEEEEEECCCcchHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677666677788889999999999 8999999999875
No 214
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.17 E-value=1.1e+02 Score=24.91 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=32.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++..+|....+..+...++...+.+++ .|++++++++.+.
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~ 73 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHK-VGMGSEMIRLKEQ 73 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677666677788899999999999 8999999999774
No 215
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.05 E-value=50 Score=27.02 Aligned_cols=41 Identities=10% Similarity=0.253 Sum_probs=33.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 72 (295)
T PRK14174 32 PGLTVIIVGEDPASQVYVRNKAKSCKE-IGMNSTVIELPADT 72 (295)
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 456777766677788899999999999 89999999998753
No 216
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=56.02 E-value=30 Score=27.24 Aligned_cols=25 Identities=4% Similarity=-0.097 Sum_probs=19.8
Q ss_pred hhhccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 67 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
..+.++|.|||.||. .++.|++.+.
T Consensus 51 ~~l~~~d~iifTS~n-------aV~~~~~~l~ 75 (255)
T PRK05752 51 LELDRYCAVIVVSKP-------AARLGLELLD 75 (255)
T ss_pred hcCCCCCEEEEECHH-------HHHHHHHHHH
Confidence 567899999999975 4677777764
No 217
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=55.99 E-value=34 Score=26.36 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=31.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe-cc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG-FP 80 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g-sP 80 (202)
+|+++.... ..|..+ .+.+++ .|+++.+++.... ..+ ...+.+.++|+|||. .|
T Consensus 2 ~ilv~d~~~-~~~~~~----~~~l~~-~G~~~~~~~~~~~----------------~~~-~~~~~~~~~dgliisGGp 56 (214)
T PRK07765 2 RILVVDNYD-SFVFNL----VQYLGQ-LGVEAEVWRNDDP----------------RLA-DEAAVAAQFDGVLLSPGP 56 (214)
T ss_pred eEEEEECCC-cHHHHH----HHHHHH-cCCcEEEEECCCc----------------CHH-HHHHhhcCCCEEEECCCC
Confidence 688887653 334434 444455 6888888776531 001 112235689999995 44
No 218
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=55.79 E-value=63 Score=24.39 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=28.2
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
+||.+ ..||...+++.+. . .|+++++++- .+++.++|+||+.-|
T Consensus 2 ~~~~~-~~gn~~~l~~~l~----~-~g~~v~v~~~-------------------------~~~l~~~d~lii~G~ 45 (196)
T TIGR01855 2 VIIDY-GVGNLGSVKRALK----R-VGAEPVVVKD-------------------------SKEAELADKLILPGV 45 (196)
T ss_pred EEEec-CCcHHHHHHHHHH----H-CCCcEEEEcC-------------------------HHHhccCCEEEECCC
Confidence 45542 3678887776655 3 5777777652 124568999999764
No 219
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=55.11 E-value=67 Score=23.79 Aligned_cols=102 Identities=17% Similarity=0.065 Sum_probs=50.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC-CcHHHHhhcCCCCCCCCCCcCChhh--hccCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET-LSSVILQKMKAPPKTNDVPVIRPHQ--LKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--l~~ad~ii~ 77 (202)
|++|++|+.. +|....=.-.-.+.+++ .|.++++...... .+. ..........++ ..... ..+||+|++
T Consensus 1 ~~~~i~i~~~--~g~e~~E~~~p~~~l~~-ag~~v~~~~~~~~~~~~--~~~~g~~~~~~~---~~~~~~~~~~ydal~i 72 (188)
T COG0693 1 MMKKIAILLA--DGFEDLELIVPYDVLRR-AGFEVDVASPEGKGKSV--TSKRGGLVVADD---KAFDDADAADYDALVI 72 (188)
T ss_pred CCceeEEEec--CcceehhHhHHHHHHHH-CCCeEEEEecCCCccee--ecccCcceEecc---cccccCCHhHCCEEEE
Confidence 5668887653 44433333344566666 7888887776542 010 000000000000 11222 569999998
Q ss_pred eccccC--Ccch-HHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 78 GFPSRF--GVMA-AQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 78 gsP~y~--g~~~-~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
---.++ ...+ ..+..|+.+.. -.||+++.++.+
T Consensus 73 pGG~~~~~~~~~~~~~~~~v~~~~-------~~~k~vaaIC~g 108 (188)
T COG0693 73 PGGDHGPEYLRPDPDLLAFVRDFY-------ANGKPVAAICHG 108 (188)
T ss_pred CCCccchhhccCcHHHHHHHHHHH-------HcCCEEEEEChh
Confidence 654322 1111 45666666653 247776666543
No 220
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.11 E-value=1.1e+02 Score=24.78 Aligned_cols=40 Identities=8% Similarity=0.228 Sum_probs=33.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++..+|....+..+...++...+.+++ .|++++++++.+.
T Consensus 31 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 70 (282)
T PRK14166 31 SCLAVILVGDNPASQTYVKSKAKACEE-CGIKSLVYHLNEN 70 (282)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677766677788899999999999 8999999999874
No 221
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.06 E-value=69 Score=26.07 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=32.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|.-..+..+...++...+.+++ .|++++++++.+..
T Consensus 33 p~Laii~vg~~~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (286)
T PRK14175 33 PKLSVILVGNDGASQSYVRSKKKAAEK-IGMISEIVHLEETA 73 (286)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356677666666788888889999998 89999999998753
No 222
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=54.95 E-value=8.2 Score=25.66 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=25.0
Q ss_pred CCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 60 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 60 ~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
+.| ...+.+++||.|++---++- +....+. ...++||.+.+.--
T Consensus 40 e~P-lt~e~leWAdiIfVMEr~Hr-------qkL~krf-----~~~lk~kRviCLDI 83 (109)
T COG4551 40 ETP-LTREQLEWADIIFVMERVHR-------QKLQKRF-----KASLKGKRVICLDI 83 (109)
T ss_pred CCC-ccHHHhhhhhhhhhHHHHHH-------HHHHHHh-----hHHhcCCeEEEEeC
Confidence 445 35788999998876332221 1111222 13578998877654
No 223
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.84 E-value=67 Score=26.30 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=33.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
++..+|....+..+...++...+.+++ .|++++++++.+...
T Consensus 34 P~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~t 75 (297)
T PRK14168 34 PGLVTILVGESPASLSYVTLKIKTAHR-LGFHEIQDNQSVDIT 75 (297)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCC
Confidence 356677766677788889999999999 899999999977533
No 224
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=54.66 E-value=28 Score=31.21 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=25.8
Q ss_pred eEEEEEecCCC--hHHHHHHHHHHHhhccCCceEE
Q 028917 4 KIYIVYYSLYG--HVETMAREVQRGANSVLGVEAT 36 (202)
Q Consensus 4 kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~ 36 (202)
|++++-.+++| +|...++.+.+..++ .|.++.
T Consensus 2 ~ilavtacp~GiAht~mAaeaL~~AA~~-~G~~i~ 35 (563)
T PRK10712 2 KTLLIIDANLGQARAYMAKTLLGAAAAK-AGLEII 35 (563)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHH-CCCccc
Confidence 78899888887 677778888888888 787654
No 225
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=54.46 E-value=29 Score=27.28 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=31.3
Q ss_pred eEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 4 KIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 4 kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
||+++..+. .|...+.+..+++.+.+ .|.+|.++.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~~ 41 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAE-KGHEVTIISLDKG 41 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 577777664 48888899999999998 7999999877553
No 226
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=54.18 E-value=71 Score=22.12 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=22.2
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCC
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGF 119 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~ 119 (202)
.+-+.++|.+|--| .|..+...++.+.. .|++ .+++|+|+
T Consensus 62 ~~~~~~~DVvIDfT------~p~~~~~~~~~~~~-------~g~~-~ViGTTG~ 101 (124)
T PF01113_consen 62 EELLEEADVVIDFT------NPDAVYDNLEYALK-------HGVP-LVIGTTGF 101 (124)
T ss_dssp HHHTTH-SEEEEES-------HHHHHHHHHHHHH-------HT-E-EEEE-SSS
T ss_pred HHhcccCCEEEEcC------ChHHhHHHHHHHHh-------CCCC-EEEECCCC
Confidence 34456699887665 45566666666531 2454 47778776
No 227
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=54.14 E-value=1.1e+02 Score=24.42 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=19.0
Q ss_pred hhhccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 67 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
+.+.++|.||++.|.+ .++.+++.+.
T Consensus 60 e~~~~aDvVilavpp~------~~~~vl~~l~ 85 (277)
T PRK06928 60 EIFTKCDHSFICVPPL------AVLPLLKDCA 85 (277)
T ss_pred HHHhhCCEEEEecCHH------HHHHHHHHHH
Confidence 3467999999999964 4566666663
No 228
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=54.09 E-value=1.3e+02 Score=25.09 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=26.6
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCC
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGF 119 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~ 119 (202)
.+-+.++|.||++.|++ .++.+++++. ..++.+...+.++=|-
T Consensus 66 ~~a~~~ad~iv~avPs~------~~r~v~~~l~-----~~l~~~~~iv~~sKGi 108 (329)
T COG0240 66 AEALDGADIIVIAVPSQ------ALREVLRQLK-----PLLLKDAIIVSATKGL 108 (329)
T ss_pred HHHHhcCCEEEEECChH------HHHHHHHHHh-----hhccCCCeEEEEeccc
Confidence 34456699999999997 4566666663 2344444445455443
No 229
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.84 E-value=29 Score=28.41 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=28.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+|+++|+-...+.+..+++.+.+.+++ .|+++.+...
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~ 40 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPS 40 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecC
Confidence 358888876566777889999999988 8988776553
No 230
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.67 E-value=58 Score=26.47 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=34.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
++..+|.-..+..+...++...+.+++ .|++++++++.+...
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~t 74 (284)
T PRK14193 33 PGLGTVLVGDDPGSQAYVRGKHRDCAE-VGITSIRRDLPADAT 74 (284)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCC
Confidence 456777767677788899999999999 899999999987533
No 231
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=53.43 E-value=27 Score=24.72 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.|-.++.+..+++++.+ .|.+|.++....
T Consensus 11 ~GG~e~~~~~l~~~l~~-~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAK-RGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHH-TT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHH-CCCEEEEEEcCC
Confidence 68899999999999999 999999986543
No 232
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=53.32 E-value=22 Score=28.84 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=27.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
||+|+-+...|+.. .+..+++.+.+ .|++|.++-
T Consensus 2 ~i~~~~g~~~g~~~-~~~~La~~L~~-~g~eV~vv~ 35 (348)
T TIGR01133 2 KVVLAAGGTGGHIF-PALAVAEELIK-RGVEVLWLG 35 (348)
T ss_pred eEEEEeCccHHHHh-HHHHHHHHHHh-CCCEEEEEe
Confidence 89988888888877 66678888888 788888874
No 233
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.84 E-value=73 Score=25.83 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=32.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
+++.+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (278)
T PRK14172 33 PKIASILVGNDGGSIYYMNNQEKVANS-LGIDFKKIKLDESI 73 (278)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356677766677788888888899998 89999999998653
No 234
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=52.80 E-value=59 Score=27.27 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=33.3
Q ss_pred ceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+++-||.+|..| +...+++.+.+.+++ .|.++-++-+.+.
T Consensus 238 ~~~giiv~tk~gQ~r~~~~~~l~k~~~~-~g~~~~li~~~~i 278 (347)
T COG1736 238 KSFGIIVSTKGGQRRLEVARELVKLLKE-AGKEVYLIVVDEI 278 (347)
T ss_pred CeEEEEEecccccCcHHHHHHHHHHHHH-cCCceEEEEecCC
Confidence 467888888876 578899999999999 8988888877663
No 235
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=52.78 E-value=59 Score=26.70 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=33.2
Q ss_pred ceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+++-||.+|..| +...+++.+.+.+++ .|.++.++-+.+.
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~-~gkk~y~i~~~~i 253 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEE-LGKEALLILLDNI 253 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHH-cCCeEEEEEeCCC
Confidence 457888888865 577899999999999 8999988888764
No 236
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=52.76 E-value=12 Score=27.07 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=28.3
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
.+.+.+.+++ .|++++.+++.+.... ...+.|.+||+|+|+
T Consensus 2 ~~~~~~~f~~-~g~~v~~l~~~~~~~~-----------------~~~~~i~~ad~I~~~ 42 (154)
T PF03575_consen 2 VEKFRKAFRK-LGFEVDQLDLSDRNDA-----------------DILEAIREADAIFLG 42 (154)
T ss_dssp HHHHHHHHHH-CT-EEEECCCTSCGHH-----------------HHHHHHHHSSEEEE-
T ss_pred HHHHHHHHHH-CCCEEEEEeccCCChH-----------------HHHHHHHhCCEEEEC
Confidence 3567788888 8988888777652111 246788999999986
No 237
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=52.68 E-value=1.3e+02 Score=24.75 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=34.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gsP~y 82 (202)
+|.|| ..|+ ++..++.++.+ .|.++.+..-........... ..... ...+.+.++|.|++..|-+
T Consensus 5 kIgiI---G~G~---mG~AiA~~L~~-sG~~Viv~~~~~~~~~~~a~~-------~Gv~~~s~~ea~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 5 TVAII---GYGS---QGHAQALNLRD-SGLNVIVGLRKGGASWKKATE-------DGFKVGTVEEAIPQADLIMNLLPDE 70 (314)
T ss_pred EEEEE---eEcH---HHHHHHHHHHH-CCCeEEEEECcChhhHHHHHH-------CCCEECCHHHHHhcCCEEEEeCCcH
Confidence 56665 2444 77888888888 787654333221101000101 01100 1234578999999999954
No 238
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=52.52 E-value=93 Score=23.01 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=23.3
Q ss_pred HHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE-ecc
Q 028917 24 QRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF-GFP 80 (202)
Q Consensus 24 ~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~-gsP 80 (202)
.+.+++ .|++++++...... ....++.++|+||+ |.|
T Consensus 15 ~~~l~~-~G~~~~~~~~~~~~-------------------~~~~~~~~~dgvil~gG~ 52 (184)
T cd01743 15 VQYLRE-LGAEVVVVRNDEIT-------------------LEELELLNPDAIVISPGP 52 (184)
T ss_pred HHHHHH-cCCceEEEeCCCCC-------------------HHHHhhcCCCEEEECCCC
Confidence 344445 68888888875420 12235688999887 565
No 239
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=52.51 E-value=1.2e+02 Score=24.43 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=58.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh-c---cCCeeEEec
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL-K---EADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~---~ad~ii~gs 79 (202)
+|.+| ..|+ +...++..+.+ .|.++.+++.....-.. ......... ...+++ . ++|.||+..
T Consensus 2 ~Ig~I---GlG~---mG~~mA~~L~~-~g~~v~v~dr~~~~~~~-~~~~g~~~~------~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 2 KLGLI---GLGK---MGGNMAERLRE-DGHEVVGYDVNQEAVDV-AGKLGITAR------HSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred EEEEE---cccH---HHHHHHHHHHh-CCCEEEEEECCHHHHHH-HHHCCCeec------CCHHHHHHhCCCCCEEEEEe
Confidence 56665 2343 55566666666 78888877754311011 111111000 122222 2 369999999
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYT 148 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 148 (202)
|.. ..++..++.+. ..++.....+-+++..+ .....+.+.+..+|..+++.+..
T Consensus 68 p~~-----~~~~~v~~~i~-----~~l~~g~ivid~st~~~-----~~~~~~~~~~~~~g~~~vdapV~ 121 (299)
T PRK12490 68 PAG-----EVTESVIKDLY-----PLLSPGDIVVDGGNSRY-----KDDLRRAEELAERGIHYVDCGTS 121 (299)
T ss_pred cCc-----hHHHHHHHHHh-----ccCCCCCEEEECCCCCc-----hhHHHHHHHHHHcCCeEEeCCCC
Confidence 964 34566665543 23332223333332221 23455666777888888875443
No 240
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.25 E-value=82 Score=25.62 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=34.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 72 (284)
T PRK14170 32 PGLAVVLVGDNQASRTYVRNKQKRTEE-AGMKSVLIELPENV 72 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 456777777777888899999999999 89999999998753
No 241
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=52.24 E-value=99 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=30.9
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++..+. .|..+..+..+++.+.+ .|.+|.++....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~-~~~~v~~i~~~~ 39 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDR-SKIQFDFLVTSK 39 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCc-cceEEEEEEeCC
Confidence 577777664 67888899999999988 899999887765
No 242
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=52.19 E-value=51 Score=26.56 Aligned_cols=39 Identities=26% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCceEEEEEecC-CChH-HHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL-YGHV-ETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T-~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||++..|.+-|- +|-| +.+++++..++. ++++++.....
T Consensus 1 ~~~~~~i~~VSDstGeTAe~v~~A~l~QF~---~~~~~~~~~p~ 41 (269)
T PRK05339 1 MMMKRHVFLVSDSTGETAETVGRAALSQFP---NVEFEEHRYPF 41 (269)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHHHhCC---CCCeeEEEeCC
Confidence 554544555564 6765 678888888884 45555555443
No 243
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.13 E-value=64 Score=26.21 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=33.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+++.+|....+..+...++...+.+++ .|++++++++.+.
T Consensus 31 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 70 (282)
T PRK14182 31 TGLTVVRVGDDPASAIYVRGKRKDCEE-VGITSVEHHLPAT 70 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 467777777777788899999999999 8999999999765
No 244
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=52.07 E-value=35 Score=24.34 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=29.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.+++++|.|...+..|+.+.+-+++ .|..+++..+.+
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~-~g~~v~~~~i~~ 60 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEE-KGINVEVVEIEG 60 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHH-TT-EEEEEE---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Confidence 6788899999999999999999999 898888877654
No 245
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=51.92 E-value=96 Score=23.56 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHH
Q 028917 16 VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFF 94 (202)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fl 94 (202)
.+...+.+.+.+++ .|+++..+.+.+. + +.+ ...+.+.++|+|+|+- |+.+-.++.|-
T Consensus 42 ~~~~~~~~~~~~~~-lG~~~~~~~~~~~-~--------------~~~-~~~~~l~~ad~I~~~G----G~~~~~~~~l~ 99 (210)
T cd03129 42 RDEYGEEYRAAFER-LGVEVVHLLLIDT-A--------------NDP-DVVARLLEADGIFVGG----GNQLRLLSVLR 99 (210)
T ss_pred hHHHHHHHHHHHHH-cCCceEEEeccCC-C--------------CCH-HHHHHHhhCCEEEEcC----CcHHHHHHHHH
Confidence 44455666666666 5665554443321 0 011 2467899999999974 44444444433
No 246
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=51.78 E-value=47 Score=24.99 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=10.7
Q ss_pred hhhhccCCeeEEec
Q 028917 66 PHQLKEADGFLFGF 79 (202)
Q Consensus 66 ~~~l~~ad~ii~gs 79 (202)
.+++.++|+||+--
T Consensus 34 ~~~l~~~D~LILPG 47 (179)
T PRK13526 34 NNDFDSIDRLVIPG 47 (179)
T ss_pred HHHHhCCCEEEECC
Confidence 45578999999854
No 247
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=51.57 E-value=31 Score=27.77 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=30.6
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++..+. .|..++.+..+++.+.+ .|.+|+++....
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 39 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVA-KGHQVAIISLTG 39 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhccc-CCceEEEEEEeC
Confidence 577777554 58888999999999998 899999887644
No 248
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.44 E-value=9.1 Score=29.21 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=27.0
Q ss_pred CCceEEEEEecCCChH-HHHHHHHHHHhhccCCceEEEE
Q 028917 1 MATKIYIVYYSLYGHV-ETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 1 M~~kiliiy~S~~G~T-~~la~~i~~~~~~~~g~~v~~~ 38 (202)
|++|++|+|+-=.|++ +..+..+..-+++ .|+.|++-
T Consensus 2 m~~kalIvwgGW~gHeP~~~ahi~~~~l~e-e~f~vev~ 39 (239)
T COG3828 2 MEKKALIVWGGWRGHEPETRAHIIKGPLEE-EGFLVEVG 39 (239)
T ss_pred CCcceEEEEccccCCCchhcchhccCcChh-hceEEEec
Confidence 7889999998667775 5667777777777 67666653
No 249
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=51.13 E-value=27 Score=29.21 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=27.0
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhcc--CCceEEEEEccC
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSV--LGVEATLWQVPE 42 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~--~g~~v~~~~l~~ 42 (202)
|||++.|- .|| .+.|+++++.+.+. .+++|+++|+-+
T Consensus 1 ilils~~~G~GH-~~aa~al~~~~~~~~~~~~~v~~~d~~~ 40 (382)
T PLN02605 1 VLILMSDTGGGH-RASAEAIKDAFQLEFGDEYQVFIVDLWK 40 (382)
T ss_pred CEEEEEcCCcCh-HHHHHHHHHHHHhhcCCCeeEEEEehhh
Confidence 58888886 566 67888999998751 235677888764
No 250
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.99 E-value=79 Score=25.76 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=34.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
++..+|....+..+...++...+.+++ .|++++++++.+...
T Consensus 27 P~LaiI~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~t 68 (287)
T PRK14181 27 PGLAVVLIGNDPASEVYVGMKVKKATD-LGMVSKAHRLPSDAT 68 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCC
Confidence 456777767677788899999999999 899999999987533
No 251
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=50.81 E-value=68 Score=26.30 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=32.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+++.+|....+..+...++...+.+++ .|++++++++...
T Consensus 40 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 79 (299)
T PLN02516 40 PGLAVVIVGSRKDSQTYVNMKRKACAE-VGIKSFDVDLPEN 79 (299)
T ss_pred CeEEEEEECCChhHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677766677788889999999999 8999999999764
No 252
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=50.70 E-value=89 Score=22.24 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=41.7
Q ss_pred eEEEEEecCCChHHHHHH-HHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAR-EVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~-~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+..|+.++..|....+.. .++..++. .|. +++++....|.+ ...+...+.+.=+++-...
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~-~G~--eVi~LG~~vp~e----------------~i~~~a~~~~~d~V~lS~~ 63 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTE-AGF--EVINLGVMTSQE----------------EFIDAAIETDADAILVSSL 63 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHH-CCC--EEEECCCCCCHH----------------HHHHHHHHcCCCEEEEcCc
Confidence 555667777554444433 44455555 785 566776543321 1233444433333333444
Q ss_pred CCcchHHHHHHHHhhh
Q 028917 83 FGVMAAQCKAFFDATY 98 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~ 98 (202)
.+.....++.+++.+.
T Consensus 64 ~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 64 YGHGEIDCRGLREKCI 79 (137)
T ss_pred cccCHHHHHHHHHHHH
Confidence 4466677899998885
No 253
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.70 E-value=1.4e+02 Score=24.41 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=32.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 73 (288)
T PRK14171 33 PKLAIVLVGDNPASIIYVKNKIKNAHK-IGIDTLLVNLSTTI 73 (288)
T ss_pred CeEEEEEeCCCccHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356677666667788889999999999 89999999997643
No 254
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.89 E-value=90 Score=25.40 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=32.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++..+|....+..+...++...+.+++ .|++++++++.+.
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~ 71 (285)
T PRK14191 32 PKLAVILVGKDPASQTYVNMKIKACER-VGMDSDLHTLQEN 71 (285)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 356677766677788889999999999 8999999999875
No 255
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=49.82 E-value=91 Score=26.13 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=32.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|.-+.+..+...++...+.+++ .|++++++++.+..
T Consensus 87 P~LaiIlvGddpaS~~Yv~~k~K~a~~-~GI~~~~~~l~~~~ 127 (345)
T PLN02897 87 PGLAVVLVGQQRDSQTYVRNKIKACEE-TGIKSLLAELPEDC 127 (345)
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHh-cCCEEEEEECCCCC
Confidence 356666666666778899999999999 89999999998753
No 256
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=49.50 E-value=59 Score=21.91 Aligned_cols=38 Identities=13% Similarity=0.012 Sum_probs=24.1
Q ss_pred eEEEEEecCCChHH--HHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYGHVE--TMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G~T~--~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
-|-|.+.|.+|+++ +=-+.+..-|+. .+++.+.+|+..
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a-~kI~fe~vDIa~ 41 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEA-KKIPFEEVDIAM 41 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHH-TT--EEEEETTT
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHH-cCCCcEEEeCcC
Confidence 35666666788754 444567777777 789999999986
No 257
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=49.44 E-value=72 Score=27.91 Aligned_cols=69 Identities=10% Similarity=-0.006 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-CCcchHHHH
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCK 91 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y-~g~~~~~~k 91 (202)
+|+.-..|...++.|++ .|++++++|+....|.+ .. .+.+.+.+...||..-=-| .|++-..+.
T Consensus 348 ~G~~v~~Al~Aa~~L~~-~GI~~~VIdl~tlkPlD-------------~~-~i~~sv~kt~~vvtvEE~~~~gGlG~~va 412 (464)
T PRK11892 348 FSIGMTYALKAAEELAK-EGIDAEVIDLRTIRPMD-------------TE-TIVESVKKTNRLVTVEEGWPQSGVGAEIA 412 (464)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEECCCCCcCC-------------HH-HHHHHHHhcCeEEEEeCCCcCCcHHHHHH
Confidence 56777778888888888 89999999998754421 11 2345566666665553322 466666666
Q ss_pred HHHHh
Q 028917 92 AFFDA 96 (202)
Q Consensus 92 ~fld~ 96 (202)
.++-.
T Consensus 413 ~~l~e 417 (464)
T PRK11892 413 ARVME 417 (464)
T ss_pred HHHHH
Confidence 55543
No 258
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=48.81 E-value=1.4e+02 Score=23.87 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=41.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||.|| | .|+ |...++..+.+ .|.+|..++........... .... +... ...+.+.++|.||++.|..
T Consensus 2 ~I~II-G--~G~---mG~sla~~L~~-~g~~V~~~d~~~~~~~~a~~-~g~~---~~~~-~~~~~~~~aDlVilavp~~- 68 (279)
T PRK07417 2 KIGIV-G--LGL---IGGSLGLDLRS-LGHTVYGVSRRESTCERAIE-RGLV---DEAS-TDLSLLKDCDLVILALPIG- 68 (279)
T ss_pred eEEEE-e--ecH---HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-CCCc---cccc-CCHhHhcCCCEEEEcCCHH-
Confidence 67776 2 343 66667777777 78888888764311111111 0000 0000 1234578999999999953
Q ss_pred CcchHHHHHHHHhhh
Q 028917 84 GVMAAQCKAFFDATY 98 (202)
Q Consensus 84 g~~~~~~k~fld~~~ 98 (202)
.+..+++.+.
T Consensus 69 -----~~~~~~~~l~ 78 (279)
T PRK07417 69 -----LLLPPSEQLI 78 (279)
T ss_pred -----HHHHHHHHHH
Confidence 3445555553
No 259
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.75 E-value=45 Score=27.42 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=29.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
+++|.|++-...-....+++.+++.+.+ .|+++.+.+
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 41 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLD 41 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEee
Confidence 4579998876666677889999999988 888877654
No 260
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=48.54 E-value=1.4e+02 Score=23.89 Aligned_cols=110 Identities=11% Similarity=0.063 Sum_probs=53.3
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
+...++..+.+ .|.+|.+++...... .......+... . ...+.+.++|.||+..|. +..++..+....
T Consensus 10 mG~~iA~~l~~-~G~~V~~~dr~~~~~-~~~~~~g~~~~----~-~~~~~~~~aDivi~~vp~-----~~~~~~v~~~~~ 77 (291)
T TIGR01505 10 MGSPMSINLAK-AGYQLHVTTIGPEVA-DELLAAGAVTA----E-TARQVTEQADVIFTMVPD-----SPQVEEVAFGEN 77 (291)
T ss_pred HHHHHHHHHHH-CCCeEEEEcCCHHHH-HHHHHCCCccc----C-CHHHHHhcCCEEEEecCC-----HHHHHHHHcCcc
Confidence 55566666666 788888877643110 11111111000 0 123567899999999996 234555441100
Q ss_pred hhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 99 ELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 99 ~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
... .....|+ ++...+. .. ......+...+...|+.++..+.
T Consensus 78 ~~~-~~~~~g~---iivd~st--~~-~~~~~~l~~~l~~~g~~~~~~pv 119 (291)
T TIGR01505 78 GII-EGAKPGK---TLVDMSS--IS-PIESKRFAKAVKEKGIDYLDAPV 119 (291)
T ss_pred hHh-hcCCCCC---EEEECCC--CC-HHHHHHHHHHHHHcCCCEEecCC
Confidence 000 0111233 2222221 11 12345566677777888776443
No 261
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=48.48 E-value=1.3e+02 Score=24.26 Aligned_cols=38 Identities=18% Similarity=0.073 Sum_probs=30.0
Q ss_pred ceEEEEEecCC---ChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLY---GHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~---G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+||.|+++..+ --+-+-++.+.+.|++ .|.++..+++.
T Consensus 4 ~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~-~g~~~~~~~~~ 44 (296)
T PRK14569 4 EKIVVLYGGDSPEREVSLKSGKAVLDSLIS-QGYDAVGVDAS 44 (296)
T ss_pred cEEEEEeCCCCCchHhHHHHHHHHHHHHHH-cCCEEEEEcCC
Confidence 47999997543 3467788899999998 89999888764
No 262
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.43 E-value=72 Score=26.06 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=33.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~ 72 (293)
T PRK14185 32 PHLAAILVGHDGGSETYVANKVKACEE-CGFKSSLIRYESDV 72 (293)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356677666677788889999999999 89999999998753
No 263
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=48.42 E-value=33 Score=25.29 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=29.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
+++||-.|.. +-+-++.-|.+ .|+.|++.+-... ...+.+.+||.||.+.+.-+
T Consensus 38 ~v~VvGrs~~-----VG~Pla~lL~~-~~atVt~~h~~T~--------------------~l~~~~~~ADIVVsa~G~~~ 91 (160)
T PF02882_consen 38 KVVVVGRSNI-----VGKPLAMLLLN-KGATVTICHSKTK--------------------NLQEITRRADIVVSAVGKPN 91 (160)
T ss_dssp EEEEE-TTTT-----THHHHHHHHHH-TT-EEEEE-TTSS--------------------SHHHHHTTSSEEEE-SSSTT
T ss_pred EEEEECCcCC-----CChHHHHHHHh-CCCeEEeccCCCC--------------------cccceeeeccEEeeeecccc
Confidence 5666654432 22334444444 5666776555431 24567899999999988743
No 264
>PRK05642 DNA replication initiation factor; Validated
Probab=47.53 E-value=35 Score=26.58 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=26.4
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+.+++||+. .|.|. ++.++...+.+ .|..+.+++..+
T Consensus 46 ~~l~l~G~~G~GKTH-Ll~a~~~~~~~-~~~~v~y~~~~~ 83 (234)
T PRK05642 46 SLIYLWGKDGVGRSH-LLQAACLRFEQ-RGEPAVYLPLAE 83 (234)
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHh-CCCcEEEeeHHH
Confidence 356788765 79888 47777777766 677777777654
No 265
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.44 E-value=1.4e+02 Score=24.28 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=33.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
++..+|....+..+...++...+.+++ .|++++++++.+...
T Consensus 32 P~Laii~vgdd~as~~Yv~~k~k~a~~-~Gi~~~~~~l~~~~~ 73 (281)
T PRK14183 32 PGLAVILVGDDPASHTYVKMKAKACDR-VGIYSITHEMPSTIS 73 (281)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCCC
Confidence 356666666667788888999999999 899999999977533
No 266
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=47.37 E-value=46 Score=28.31 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=17.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+|++|-. |-+.. |.+.+++ .|+++.++.-
T Consensus 194 ~I~viD~---g~k~n----i~~~L~~-~G~~v~vvp~ 222 (382)
T CHL00197 194 KIIVIDF---GVKYN----ILRRLKS-FGCSITVVPA 222 (382)
T ss_pred EEEEEEC---CcHHH----HHHHHHH-CCCeEEEEcC
Confidence 6777765 33333 5555555 6877777643
No 267
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=47.20 E-value=50 Score=29.11 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=34.7
Q ss_pred ceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 3 TKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 3 ~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
..+-||.++..+ ++..+++.+.+.+++ +|.+..++-+.+..|
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~-~GkK~yl~~vgkinp 324 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKT-AGKKHYLFVVGKPNP 324 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCCH
Confidence 357788888765 788999999999999 999999988877544
No 268
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=47.02 E-value=52 Score=26.09 Aligned_cols=80 Identities=8% Similarity=0.037 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChh--hhccCCeeEEeccccCCcchHHHHHH
Q 028917 16 VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPH--QLKEADGFLFGFPSRFGVMAAQCKAF 93 (202)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~ad~ii~gsP~y~g~~~~~~k~f 93 (202)
|..+++.+++...+..++++.++--...+.+++.+. .... +=++-|.+|+.|| |+..|++-+.
T Consensus 14 ~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~------------~~~~~~~~~~pdf~I~isP--N~~~PGP~~A- 78 (276)
T PF01993_consen 14 TSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEE------------VVTKMLKEWDPDFVIVISP--NAAAPGPTKA- 78 (276)
T ss_dssp HHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHH------------HHHHHHHHH--SEEEEE-S---TTSHHHHHH-
T ss_pred hHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHH------------HHHHHHHhhCCCEEEEECC--CCCCCCcHHH-
Confidence 778888888888774678888776654333322210 1111 2358899999999 6778887543
Q ss_pred HHhhhhhhhhccCCCCceEEEEec
Q 028917 94 FDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 94 ld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
=+.+ .-+|.|+.+++-.
T Consensus 79 RE~l-------~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 79 REML-------SAKGIPCIVISDA 95 (276)
T ss_dssp HHHH-------HHSSS-EEEEEEG
T ss_pred HHHH-------HhCCCCEEEEcCC
Confidence 1111 1278898887653
No 269
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=47.00 E-value=60 Score=21.68 Aligned_cols=42 Identities=17% Similarity=0.095 Sum_probs=27.7
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCc
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGV 85 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~ 85 (202)
+++.+++.+.+..|.++.++|+.+. -.-+|.+|++|..-.-.
T Consensus 1 ~~~~i~~~l~~~k~~dI~v~dv~~~-------------------------~~~~dy~II~T~~S~rh 42 (100)
T PF02410_consen 1 MLEEIVEALEDKKAEDIVVLDVREK-------------------------SSWADYFIIATGRSERH 42 (100)
T ss_dssp -HHHHHHHHHHTT-EEEEEEEGCTT-------------------------BSS-SEEEEEEESSHHH
T ss_pred CHHHHHHHHHHcCCCCeEEEECCCC-------------------------CcccCEEEEEEcCCHHH
Confidence 4567777777756778999998751 14679999998765333
No 270
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=46.96 E-value=46 Score=22.67 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=25.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
++-++|..|.+|+|+.+.+.+. .+++ .|+.+-.+.
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~-~ak~-~g~~vi~iT 87 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLR-FAKE-RGAPVILIT 87 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHH-HHHH-TTSEEEEEE
T ss_pred ccceeEeeeccccchhhhhhhH-HHHh-cCCeEEEEe
Confidence 3456777789999999998888 6676 787664433
No 271
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=46.90 E-value=1.6e+02 Score=24.21 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=32.8
Q ss_pred cCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcccccceeecCCCCCCCCHHHHH
Q 028917 105 ALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQ 184 (202)
Q Consensus 105 ~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~ 184 (202)
.++|++++.++-+ .....++.......||.+.-. .+.+ ..|+++-++
T Consensus 150 ~l~g~k~a~vGDg-------NNv~nSl~~~~a~~G~dv~ia-------------------------~Pk~-~~p~~~~~~ 196 (310)
T COG0078 150 SLKGLKLAYVGDG-------NNVANSLLLAAAKLGMDVRIA-------------------------TPKG-YEPDPEVVE 196 (310)
T ss_pred cccCcEEEEEcCc-------chHHHHHHHHHHHhCCeEEEE-------------------------CCCc-CCcCHHHHH
Confidence 4889988666432 234556666666778876510 0111 357888888
Q ss_pred HHHHHhH
Q 028917 185 QAFHQGK 191 (202)
Q Consensus 185 ~a~~~g~ 191 (202)
.|++.++
T Consensus 197 ~a~~~a~ 203 (310)
T COG0078 197 KAKENAK 203 (310)
T ss_pred HHHHHHH
Confidence 8877765
No 272
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=46.86 E-value=71 Score=25.00 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=24.9
Q ss_pred HHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec-ccc
Q 028917 23 VQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF-PSR 82 (202)
Q Consensus 23 i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs-P~y 82 (202)
+.+.+++ .|++++++...+.. ....++.++|+|||.- +.|
T Consensus 15 ~~~al~~-aG~~v~~v~~~~~~-------------------~~~~~l~~~d~liipGG~~~ 55 (238)
T cd01740 15 MAYAFEL-AGFEAEDVWHNDLL-------------------AGRKDLDDYDGVVLPGGFSY 55 (238)
T ss_pred HHHHHHH-cCCCEEEEeccCCc-------------------cccCCHhhCCEEEECCCCCc
Confidence 4444555 68888888775420 1123578999998864 444
No 273
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=46.80 E-value=98 Score=21.62 Aligned_cols=12 Identities=50% Similarity=0.706 Sum_probs=9.0
Q ss_pred ccCCeeEE-eccc
Q 028917 70 KEADGFLF-GFPS 81 (202)
Q Consensus 70 ~~ad~ii~-gsP~ 81 (202)
..||+|++ |.|.
T Consensus 51 ~GADGV~V~gC~~ 63 (124)
T PF02662_consen 51 KGADGVLVAGCHP 63 (124)
T ss_pred cCCCEEEEeCCCC
Confidence 67999999 5553
No 274
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=46.77 E-value=1.3e+02 Score=22.97 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=15.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCC-ceEEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLG-VEATLWQ 39 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g-~~v~~~~ 39 (202)
.+|+|+..-. +-...|++.+++ .| +-.+++.
T Consensus 2 ~~ilIld~g~-----q~~~li~r~~re-~g~v~~e~~~ 33 (198)
T COG0518 2 RKILILDFGG-----QYLGLIARRLRE-LGYVYSEIVP 33 (198)
T ss_pred cEEEEEeCCC-----cHhHHHHHHHHH-cCCceEEEEe
Confidence 3788887321 222344444555 56 4444433
No 275
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=46.65 E-value=32 Score=24.83 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=43.6
Q ss_pred eEEEEEecCC-ChHHHHHHHHHHHhhccCCc---eEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSLY-GHVETMAREVQRGANSVLGV---EATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~-G~T~~la~~i~~~~~~~~g~---~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
||+||...-+ -.|+.+.+...+.+.+ .|+ +++++.++-.+.....-+ ..-+-.++|+||.--
T Consensus 5 ri~IV~s~~n~~i~~~ll~~a~~~l~~-~g~~~~~i~~~~VPGa~ElP~a~~-------------~l~~~~~~Davi~lG 70 (144)
T PF00885_consen 5 RIAIVVSRFNEEITDRLLEGALEELKR-HGVAEENIEVIRVPGAFELPLAAK-------------RLAESGRYDAVIALG 70 (144)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHH-TTTTGGCEEEEEESSGGGHHHHHH-------------HHHHCSTESEEEEEE
T ss_pred EEEEEEEeccHHHHHHHHHHHHHHHHH-cCCCccceEEEEcCCHHHHHHHHH-------------HHhcccCccEEEEec
Confidence 6888876655 3689999999999998 787 788988876422111000 011224588888766
Q ss_pred cccCCcch
Q 028917 80 PSRFGVMA 87 (202)
Q Consensus 80 P~y~g~~~ 87 (202)
-++-|.-+
T Consensus 71 ~VI~G~T~ 78 (144)
T PF00885_consen 71 CVIRGETD 78 (144)
T ss_dssp EEE--SST
T ss_pred cccCCCch
Confidence 66655543
No 276
>PRK13626 transcriptional regulator SgrR; Provisional
Probab=46.16 E-value=83 Score=27.99 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=26.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+-+.+++.+...+.+|+.|++.+++ .|+++++..+.
T Consensus 405 l~l~~~~~~~~~~~~A~~iq~~l~~-~GI~v~i~~~~ 440 (552)
T PRK13626 405 LTLTFYQDHSEHRVIAGIMQQLLAS-HGVTLEIQEID 440 (552)
T ss_pred EEEEEecCCccHHHHHHHHHHHHHH-hCcEEEEEEee
Confidence 3444444445668999999999999 79998885543
No 277
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=46.14 E-value=44 Score=25.96 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=16.5
Q ss_pred cCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 71 EADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
..|.|+|.||. .++.|++.+.
T Consensus 170 ~~d~i~f~S~~-------~~~~f~~~~~ 190 (240)
T PRK09189 170 PFDAVLLYSRV-------AARRFFALMR 190 (240)
T ss_pred CCCEEEEeCHH-------HHHHHHHHHh
Confidence 46999999987 4788888763
No 278
>PRK10307 putative glycosyl transferase; Provisional
Probab=45.91 E-value=36 Score=28.60 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=29.9
Q ss_pred ceEEEEE--ecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVY--YSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy--~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|||+++. +.| .|.++.....+++.+.+ .|++|+++...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~-~G~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAA-RGHEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHH-CCCeEEEEecC
Confidence 3899987 355 36667778899999998 89999998754
No 279
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.91 E-value=1.5e+02 Score=24.24 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=32.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
+++.+|....+..+...++...+.+++ .|++++++++.+..
T Consensus 30 P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~ 70 (287)
T PRK14173 30 PHLRVVRLGEDPASVSYVRLKDRQAKA-LGLRSQVEVLPEST 70 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356666666666778888999999999 89999999998653
No 280
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=45.65 E-value=1.6e+02 Score=23.77 Aligned_cols=118 Identities=12% Similarity=0.161 Sum_probs=59.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||.+|= .|+ +...++..+.+ .|.+|.+++.....- ..+........ .+.. ...+.+.++|.|++..|.-
T Consensus 2 ~Ig~IG---lG~---mG~~la~~L~~-~g~~V~~~dr~~~~~-~~l~~~g~~~~-~s~~-~~~~~~~~~dvIi~~vp~~- 70 (298)
T TIGR00872 2 QLGLIG---LGR---MGANIVRRLAK-RGHDCVGYDHDQDAV-KAMKEDRTTGV-ANLR-ELSQRLSAPRVVWVMVPHG- 70 (298)
T ss_pred EEEEEc---chH---HHHHHHHHHHH-CCCEEEEEECCHHHH-HHHHHcCCccc-CCHH-HHHhhcCCCCEEEEEcCch-
Confidence 666652 333 56666777777 788888877643110 11111111000 0110 1123345689999999873
Q ss_pred CcchHHHHHHHHhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028917 84 GVMAAQCKAFFDATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYT 148 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 148 (202)
.+...++.+.. .+ .|+.+ +-++.+.+ . ....+...+...|...++.+..
T Consensus 71 -----~~~~v~~~l~~-----~l~~g~iv-id~st~~~-~----~t~~~~~~~~~~g~~~vda~vs 120 (298)
T TIGR00872 71 -----IVDAVLEELAP-----TLEKGDIV-IDGGNSYY-K----DSLRRYKLLKEKGIHLLDCGTS 120 (298)
T ss_pred -----HHHHHHHHHHh-----hCCCCCEE-EECCCCCc-c----cHHHHHHHHHhcCCeEEecCCC
Confidence 45666666532 23 34422 22222211 1 1233445677788888875543
No 281
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=45.55 E-value=40 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=31.1
Q ss_pred eEEEEE--ecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVY--YSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy--~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||++|. +++ .|..+..+..+++.+.+ .|.+|+++....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 41 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAA-RGIEVAVLCASP 41 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHh-CCCceEEEecCC
Confidence 577775 456 67888899999999998 799999988765
No 282
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=45.40 E-value=69 Score=24.30 Aligned_cols=60 Identities=25% Similarity=0.251 Sum_probs=35.2
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
...+.+.+++ .|.++..+.+-+..+... .... .....+..+|.|||.||. .++.|++.+.
T Consensus 10 ~~~l~~~L~~-~G~~~~~~p~~~~~~~~~----------~~~~-~~~~~~~~~~~iiftS~~-------av~~~~~~~~ 69 (239)
T cd06578 10 ADELAALLEA-LGAEVLELPLIEIEPLDD----------AELD-AALADLDEYDWLIFTSPN-------AVEAFFEALE 69 (239)
T ss_pred hHHHHHHHHH-cCCcEEEeeeEEEecCCh----------HHHH-HHHHhcCCCCEEEEECHH-------HHHHHHHHHH
Confidence 4566777777 787776665544211000 0000 123455689999999995 5677776654
No 283
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.36 E-value=49 Score=26.70 Aligned_cols=35 Identities=17% Similarity=-0.033 Sum_probs=29.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
|+.|++......+..+++.+.+.+++ .|+++.+..
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~ 36 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDS 36 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 88888766667888999999999988 898887753
No 284
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=45.35 E-value=1e+02 Score=21.50 Aligned_cols=97 Identities=10% Similarity=-0.004 Sum_probs=48.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhh--hccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQ--LKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~ad~ii~gsP 80 (202)
+||.|+-+. |....-+..+.+.++. +|.++.++....... .. .+... -.++...++ ..++|+||+...
T Consensus 2 ~~v~ill~~--g~~~~e~~~~~~~~~~-a~~~v~vvs~~~~~v----~s-~~g~~--i~~~~~l~~~~~~~~D~liVpGg 71 (142)
T cd03132 2 RKVGILVAD--GVDAAELSALKAALKA-AGANVKVVAPTLGGV----VD-SDGKT--LEVDQTYAGAPSVLFDAVVVPGG 71 (142)
T ss_pred CEEEEEEcC--CcCHHHHHHHHHHHHH-CCCEEEEEecCcCce----ec-CCCcE--EecceeecCCChhhcCEEEECCC
Confidence 477777643 4444445566777777 788888887653100 00 00000 000001122 236898888753
Q ss_pred ccCC---cchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 81 SRFG---VMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 81 ~y~g---~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
..+. ...+.+..|+.+.. -++|+++.+++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~-------~~~~~I~aic~ 103 (142)
T cd03132 72 AEAAFALAPSGRALHFVTEAF-------KHGKPIGAVGE 103 (142)
T ss_pred ccCHHHHccChHHHHHHHHHH-------hcCCeEEEcCc
Confidence 2211 22345666665542 26787766654
No 285
>PRK07952 DNA replication protein DnaC; Validated
Probab=44.93 E-value=1.5e+02 Score=23.35 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=41.2
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEecccc
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gsP~y 82 (202)
-++++|.+ +|.|. ++.+|+..+.. .|..|.++++.+.... +....- . .+..+ .....+.++|.|||=-.-.
T Consensus 101 ~~~l~G~~GtGKTh-La~aia~~l~~-~g~~v~~it~~~l~~~--l~~~~~--~-~~~~~~~~l~~l~~~dlLvIDDig~ 173 (244)
T PRK07952 101 SFIFSGKPGTGKNH-LAAAICNELLL-RGKSVLIITVADIMSA--MKDTFS--N-SETSEEQLLNDLSNVDLLVIDEIGV 173 (244)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHh-cCCeEEEEEHHHHHHH--HHHHHh--h-ccccHHHHHHHhccCCEEEEeCCCC
Confidence 46777765 78887 55577777766 6888888877653110 110000 0 01110 2356688999999865433
No 286
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=44.86 E-value=1.1e+02 Score=22.06 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=45.0
Q ss_pred ceEEEEEecC-----------CCh--HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh
Q 028917 3 TKIYIVYYSL-----------YGH--VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL 69 (202)
Q Consensus 3 ~kiliiy~S~-----------~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 69 (202)
|||+|+++-. +|+ -+.+-+.+.+...+ .|++++++.-+. ..+.+. .+.+..
T Consensus 1 m~IlvinGPNLn~LG~Rep~iYG~~tl~~i~~~~~~~a~~-~g~~v~~~QSN~--EGelid-------------~I~~a~ 64 (140)
T PF01220_consen 1 MKILVINGPNLNLLGKREPEIYGTTTLEDIEQKCKETAAE-LGVEVEFFQSNH--EGELID-------------WIHEAR 64 (140)
T ss_dssp EEEEEEE-TTGGGTTTSSHHHHTSSHHHHHHHHHHHHHHH-TTEEEEEEE-SS--HHHHHH-------------HHHHHT
T ss_pred CEEEEEcCCCcccccCCCCCcCCcCCHHHHHHHHHHHHHH-CCCeEEEEecCC--HHHHHH-------------HHHHHH
Confidence 4899999742 343 25677778888887 899988887643 111110 134555
Q ss_pred ccCCeeEEecccc-CCcchHHHHHHHHhh
Q 028917 70 KEADGFLFGFPSR-FGVMAAQCKAFFDAT 97 (202)
Q Consensus 70 ~~ad~ii~gsP~y-~g~~~~~~k~fld~~ 97 (202)
.++|+||+=.--| ..+ -.+..-+..+
T Consensus 65 ~~~dgiIINpga~thtS--~Ai~DAl~~~ 91 (140)
T PF01220_consen 65 DDVDGIIINPGAYTHTS--IAIRDALKAI 91 (140)
T ss_dssp CTTSEEEEE-GGGGHT---HHHHHHHHCC
T ss_pred hhCCEEEEccchhcccc--HHHHHHHHcC
Confidence 6789999977666 233 3455555444
No 287
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=44.35 E-value=2.3e+02 Score=26.46 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=33.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
+||+|- .-.+.|..|++.+.+... .++++.+++.... .....+.+..+|+||++
T Consensus 7 ~iL~ID-~~DSft~nl~~~l~~~~g--~~~~v~vv~~d~~------------------~~~~~~~l~~~D~VVIs 60 (742)
T TIGR01823 7 HVLFID-SYDSFTYNVVRLLEQQTD--ISVHVTTVHSDTF------------------QDQLLELLPLFDAIVVG 60 (742)
T ss_pred eEEEEe-CCcchHHHHHHHHHHhcC--CCcEEEEEeCCCC------------------chhhhhhhcCCCEEEEC
Confidence 577764 335688889988777643 2455666654321 00123456789999994
No 288
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=44.28 E-value=1.7e+02 Score=26.85 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh-ccCCeeEEeccccCCcchHHHH
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL-KEADGFLFGFPSRFGVMAAQCK 91 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ad~ii~gsP~y~g~~~~~~k 91 (202)
+|..-..|..+++.|++ .|++++++|+....|. |. .....+ +....||..==-..|++.+.+.
T Consensus 552 ~G~~v~~Al~AA~~L~~-~GI~v~VId~rsikPl-------------D~--~~i~sl~k~~~~vVt~Ee~~~GG~Gs~Va 615 (641)
T PLN02234 552 YGSAVQRCLEAASMLSE-RGLKITVADARFCKPL-------------DV--ALIRSLAKSHEVLITVEEGSIGGFGSHVV 615 (641)
T ss_pred ecHHHHHHHHHHHHHHh-cCCCEEEEecCCcCCC-------------CH--HHHHHHHHhCCEEEEECCCCCCcHHHHHH
Confidence 56677777777888887 7999999999865442 11 122333 4455555442222388888888
Q ss_pred HHHHhh
Q 028917 92 AFFDAT 97 (202)
Q Consensus 92 ~fld~~ 97 (202)
.++-..
T Consensus 616 ~~l~e~ 621 (641)
T PLN02234 616 QFLALD 621 (641)
T ss_pred HHHHHc
Confidence 888654
No 289
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.22 E-value=1.7e+02 Score=23.71 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=33.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
++..+|....+..+...++...+.+++ .|++++++++.+...
T Consensus 27 P~Laii~vg~d~as~~Yv~~k~k~~~~-~Gi~~~~~~l~~~~~ 68 (279)
T PRK14178 27 PRLATVIVGDDPASQMYVRMKHRACER-VGIGSVGIELPGDAT 68 (279)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCCC
Confidence 456677766667788888999999999 899999999987533
No 290
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=43.70 E-value=35 Score=27.52 Aligned_cols=38 Identities=29% Similarity=0.305 Sum_probs=30.4
Q ss_pred eEEEEEe--c--CCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYY--S--LYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~--S--~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+||-. . ..|.++..+..+++.+.+ .|.+|+++....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~-~g~~v~v~~~~~ 42 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVA-RGHEVTVYCRSP 42 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHh-cCCCEEEEEccC
Confidence 5777732 2 268899999999999999 899999987654
No 291
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=43.67 E-value=85 Score=24.49 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=10.4
Q ss_pred hhhhccCCeeEEec
Q 028917 66 PHQLKEADGFLFGF 79 (202)
Q Consensus 66 ~~~l~~ad~ii~gs 79 (202)
...+.++|.|.+|-
T Consensus 79 e~~l~~~d~IyVgG 92 (224)
T COG3340 79 ENKLMKADIIYVGG 92 (224)
T ss_pred HHhhhhccEEEECC
Confidence 44566799999884
No 292
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=43.58 E-value=84 Score=24.91 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=34.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCc-eEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGV-EATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
||++|-. ..+.-...++...+.++. .|+ +++.+++.+-.. .+-+ ...+.+.+||+|+|+-
T Consensus 30 rI~~ipt-AS~~~~~~~~~~~~~~~~-lG~~~v~~l~i~~r~~-------------a~~~-~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 30 IIVIITS-ASEEPREVGERYITIFSR-LGVKEVKILDVRERED-------------ASDE-NAIALLSNATGIFFTG 90 (250)
T ss_pred eEEEEeC-CCCChHHHHHHHHHHHHH-cCCceeEEEecCChHH-------------ccCH-HHHHHHhhCCEEEEeC
Confidence 5665542 223344456667777776 676 467777643100 0111 2357799999999973
No 293
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=43.53 E-value=1.7e+02 Score=23.56 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=58.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||.+| ..|+ |...++..+.+ .|.++.+++.....-.. .....+... ++.. ...+...++|.||+..|..
T Consensus 2 ~Ig~I---GlG~---MG~~mA~~L~~-~g~~v~v~dr~~~~~~~-~~~~g~~~~-~~~~-e~~~~~~~~dvvi~~v~~~- 70 (301)
T PRK09599 2 QLGMI---GLGR---MGGNMARRLLR-GGHEVVGYDRNPEAVEA-LAEEGATGA-DSLE-ELVAKLPAPRVVWLMVPAG- 70 (301)
T ss_pred EEEEE---cccH---HHHHHHHHHHH-CCCeEEEEECCHHHHHH-HHHCCCeec-CCHH-HHHhhcCCCCEEEEEecCC-
Confidence 56665 2343 55666666666 78888887765311011 111111100 0000 0112222469999998862
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYT 148 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 148 (202)
..++..++.+.. .++...+.+-.++++ . .....+...+...|..+++.+..
T Consensus 71 ----~~~~~v~~~l~~-----~l~~g~ivid~st~~----~-~~~~~~~~~~~~~g~~~~dapvs 121 (301)
T PRK09599 71 ----EITDATIDELAP-----LLSPGDIVIDGGNSY----Y-KDDIRRAELLAEKGIHFVDVGTS 121 (301)
T ss_pred ----cHHHHHHHHHHh-----hCCCCCEEEeCCCCC----h-hHHHHHHHHHHHcCCEEEeCCCC
Confidence 244555555431 333333333222222 1 23445667778889998875443
No 294
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=43.42 E-value=61 Score=26.00 Aligned_cols=38 Identities=13% Similarity=-0.055 Sum_probs=27.1
Q ss_pred ceEEEEEec--CCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYS--LYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S--~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|+++|+-. ..+...+..+.+.+.+.+ .|.+++++...
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~ 41 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTW 41 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEec
Confidence 478877744 344567778888888888 78887776544
No 295
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=43.41 E-value=98 Score=21.26 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=30.5
Q ss_pred ceEEEEEecCCC---hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYG---HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|||.|+|+-.+. =+-.=|+.+.+.+.+ .+.++..+.+..
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~-~~y~v~~i~i~k 42 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDK-EKYEVIPIYIDK 42 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHT-TTEEEEEEEETT
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhh-hcceEEEEeecC
Confidence 489999987654 256677889999987 788888888865
No 296
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.11 E-value=52 Score=26.77 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=33.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
+++||-.| ..+.+-++.-|.. .|+.|.+.+-... .+.+.+.+||.||.+++.
T Consensus 160 ~vvVIGrs-----~~VG~pla~lL~~-~gatVtv~~s~t~--------------------~l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 160 NAVVIGRS-----HIVGQPVSKLLLQ-KNASVTILHSRSK--------------------DMASYLKDADVIVSAVGK 211 (286)
T ss_pred EEEEECCC-----chhHHHHHHHHHH-CCCeEEEEeCCch--------------------hHHHHHhhCCEEEECCCC
Confidence 56666444 3344455555555 6777777664320 245678999999999887
No 297
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=43.03 E-value=84 Score=19.84 Aligned_cols=39 Identities=3% Similarity=-0.166 Sum_probs=24.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|.|.+.+.-+.++++.+.+.+-..+..|++.+.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~ 40 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHA 40 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCC
Confidence 555544443577777776666644432377788888764
No 298
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=42.90 E-value=28 Score=25.71 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
+|+|.+++.+|+..|-+ .|+.|.+.+
T Consensus 4 ~G~~sKvaraiA~~LC~-rgv~V~m~~ 29 (164)
T PF12076_consen 4 TGNTSKVARAIALALCR-RGVQVVMLS 29 (164)
T ss_pred cccccHHHHHHHHHHHh-cCCEEEEec
Confidence 69999999999999999 899888774
No 299
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=42.86 E-value=41 Score=24.98 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred eEEEEEec-C-CChHHHHHHHHHHHhhccCCceEEEEEccCC-CcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 4 KIYIVYYS-L-YGHVETMAREVQRGANSVLGVEATLWQVPET-LSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 4 kiliiy~S-~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+++|..= . ++...+.+..+... .. .|.++.++...+. ..+ +.++ ...+++..||.| |+|=
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~-~~-p~l~l~~~~~~el~~~~------------~~~~-~~~~aia~ADii-~~sm 65 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRD-HC-PGLELSVFAAAELERDP------------EALE-ECEAAIARADII-FGSM 65 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhc-cC-CCeEEEEEeHHHhhcCh------------HHHH-HHHHHHHhCCEE-Eeeh
Confidence 66666532 2 34445555554444 22 6889999888763 111 0111 246788999965 4555
Q ss_pred ccCCc
Q 028917 81 SRFGV 85 (202)
Q Consensus 81 ~y~g~ 85 (202)
.+...
T Consensus 66 lF~ed 70 (164)
T PF11965_consen 66 LFIED 70 (164)
T ss_pred hhhHH
Confidence 54443
No 300
>PRK06835 DNA replication protein DnaC; Validated
Probab=42.77 E-value=2e+02 Score=23.92 Aligned_cols=70 Identities=9% Similarity=0.038 Sum_probs=41.0
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
+-+++||.+ +|-|. |+.+|+..+-. .|..|..+...+.... ........ . .+.. .....+.++|.|||=-
T Consensus 184 ~~Lll~G~~GtGKTh-La~aIa~~l~~-~g~~V~y~t~~~l~~~-l~~~~~~~-~-~~~~-~~~~~l~~~DLLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTF-LSNCIAKELLD-RGKSVIYRTADELIEI-LREIRFNN-D-KELE-EVYDLLINCDLLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHH-HHHHHHHHHHH-CCCeEEEEEHHHHHHH-HHHHHhcc-c-hhHH-HHHHHhccCCEEEEec
Confidence 356778764 78888 77788888877 7888888777552110 00000000 0 0000 1146788999999853
No 301
>PRK13337 putative lipid kinase; Reviewed
Probab=42.54 E-value=60 Score=26.33 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=26.7
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|+++|+--. .|...+....+.+.+.+ .|.+++++....
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~ 42 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTG 42 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecC
Confidence 4888777433 34445667778888888 888887766543
No 302
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=42.24 E-value=1.4e+02 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=21.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
++|+||-+- .+++..+++.+ ++ .|+++++++..
T Consensus 517 ~~IlVID~g-ds~~~~l~~~L----~~-~G~~v~vv~~~ 549 (717)
T TIGR01815 517 RRILLVDHE-DSFVHTLANYL----RQ-TGASVTTLRHS 549 (717)
T ss_pred CEEEEEECC-ChhHHHHHHHH----HH-CCCeEEEEECC
Confidence 478888644 56666555554 44 57788877654
No 303
>PRK00074 guaA GMP synthase; Reviewed
Probab=42.04 E-value=85 Score=27.78 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=20.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|+.+|+||-+ ..++|..+++++ ++ .|+.++++..
T Consensus 2 ~~~~i~vlD~-Gsq~~~li~r~l----re-lg~~~~v~p~ 35 (511)
T PRK00074 2 HHDKILILDF-GSQYTQLIARRV----RE-LGVYSEIVPY 35 (511)
T ss_pred CCCEEEEEEC-CCCcHHHHHHHH----HH-CCCeEEEEEC
Confidence 3456888764 345566555554 44 5777777754
No 304
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=42.04 E-value=70 Score=26.47 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=30.7
Q ss_pred CceEEEEEecCCC---hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYG---HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||.|+++-.+. =+-+=++.+.+.|.+ .|.++..+++..
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~-~~~~v~~i~i~~ 45 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDT-EKYEPFYIGITK 45 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcc-cCCeEEEEEECC
Confidence 4589999986643 245667788888988 899999888865
No 305
>PRK08181 transposase; Validated
Probab=41.92 E-value=1.2e+02 Score=24.37 Aligned_cols=68 Identities=7% Similarity=0.037 Sum_probs=38.7
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
-++++|.+ +|-|. ++.+++..+.+ .|..|.++...+... ....... + .... .....+..+|.|||==.
T Consensus 108 nlll~Gp~GtGKTH-La~Aia~~a~~-~g~~v~f~~~~~L~~-~l~~a~~---~-~~~~-~~l~~l~~~dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSH-LAAAIGLALIE-NGWRVLFTRTTDLVQ-KLQVARR---E-LQLE-SAIAKLDKFDLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHH-HHHHHHHHHHH-cCCceeeeeHHHHHH-HHHHHHh---C-CcHH-HHHHHHhcCCEEEEecc
Confidence 36667665 78887 66677777766 688887777654211 0100000 0 0011 13566789999996543
No 306
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=41.76 E-value=1.4e+02 Score=24.86 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=39.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec-
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF- 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs- 79 (202)
|..||.+|-+ .|--..+..+..+-++. .+.++++..+.- ......... +.+|+...+.++++|++++|.
T Consensus 1 ~~~~I~vipG--DGIGpEV~~~a~~vl~~-~~~~~~~~~~~~--G~~~~~~~G-----~~lp~~~l~~~~~~da~L~Gav 70 (334)
T PRK08997 1 MKQTITVIPG--DGIGPSIIDATLKILDK-LGCDFEYEFADA--GLTALEKHG-----ELLPQRTLDLIEKNKIALKGPL 70 (334)
T ss_pred CCcEEEEECC--CcccHHHHHHHHHHHHh-cCCCeEEEEEcC--CHHHHHhhC-----CCCCHHHHHHHHHCCEEEECcc
Confidence 6667888753 45445566666666654 344444444321 111111111 234444678899999999984
Q ss_pred --cccC
Q 028917 80 --PSRF 83 (202)
Q Consensus 80 --P~y~ 83 (202)
|.|.
T Consensus 71 g~p~~~ 76 (334)
T PRK08997 71 TTPVGE 76 (334)
T ss_pred cCCCCc
Confidence 6544
No 307
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=41.66 E-value=75 Score=23.66 Aligned_cols=111 Identities=15% Similarity=0.035 Sum_probs=50.3
Q ss_pred ceEEEEEecC---CC-------hHHHHHHHHHHHhhcc----CCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhh
Q 028917 3 TKIYIVYYSL---YG-------HVETMAREVQRGANSV----LGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQ 68 (202)
Q Consensus 3 ~kiliiy~S~---~G-------~T~~la~~i~~~~~~~----~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (202)
+||-|+-.|- .| .|..+++.+++.+++. .|-+|+++--.+..-. ..+.. ...++
T Consensus 4 pkIGIrp~iDGR~~gVresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Igg-v~eAa-----------~~ae~ 71 (171)
T PF07881_consen 4 PKIGIRPTIDGRRGGVRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGG-VAEAA-----------ACAEK 71 (171)
T ss_dssp -EEEEEEB----TTTHHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-S-HHHHH-----------HHHHH
T ss_pred CeEEEEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccC-HHHHH-----------HHHHH
Confidence 4677777663 34 6888888888888871 3667777665543110 00000 01222
Q ss_pred h--ccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCc
Q 028917 69 L--KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGM 140 (202)
Q Consensus 69 l--~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~ 140 (202)
+ .+.+..|+.+|+|.+.--. +|. ....-|++..|....++ | . ..|......+.+.|.
T Consensus 72 f~~~~V~~titvtpcWcy~~et-----md~-------~~~~p~aiwgfngterP-G-a-VyLaAa~aa~~Q~Gi 130 (171)
T PF07881_consen 72 FKREGVGVTITVTPCWCYGSET-----MDM-------DPNTPKAIWGFNGTERP-G-A-VYLAAALAAHNQKGI 130 (171)
T ss_dssp HHCCTEEEEEEEESS---HHHH-----S----------TTS-EEEEE---SSS--H-H-HHHHHHHHHHHHCT-
T ss_pred HHHcCCCEEEEEEeeeecchhh-----hcc-------CcCCCccEEeecCCCCC-c-H-HHHHHHHHHHhcCCC
Confidence 2 5678899999999653111 222 13455667777655442 2 2 223344445556665
No 308
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=41.47 E-value=72 Score=22.42 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=22.5
Q ss_pred eEEEEE-ecCCChH-HHHHHHHHHHhhccCCce-EEEEEccC
Q 028917 4 KIYIVY-YSLYGHV-ETMAREVQRGANSVLGVE-ATLWQVPE 42 (202)
Q Consensus 4 kiliiy-~S~~G~T-~~la~~i~~~~~~~~g~~-v~~~~l~~ 42 (202)
|++|+. .+|+|+. ..-+-.++..+.+ .|.+ +.++-..|
T Consensus 2 ~~~iv~~~~Py~~~~~~~al~~A~aa~~-~gh~v~~vFf~~D 42 (128)
T PRK00207 2 RYAIAVTGPAYGTQQASSAYQFAQALLA-EGHELVSVFFYQD 42 (128)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHHh-CCCCeeEEEEehH
Confidence 677666 5568643 2444455555555 6776 46666654
No 309
>cd00995 PBP2_NikA_DppA_OppA_like The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel/dipeptide/oligopeptide transport systems, which function in the import of nickel and peptides, and other closely related proteins. The oligopeptide-binding protein OppA is a periplasmic component of an ATP-binding cassette (ABC) transport system OppABCDEF consisting of five subunits: two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is inv
Probab=41.28 E-value=1e+02 Score=26.10 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=26.9
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.+++.+.......+++.|++.+++ .|+++++..+.
T Consensus 325 l~l~~~~~~~~~~~~a~~i~~~l~~-~Gi~v~~~~~~ 360 (466)
T cd00995 325 LTLLYNSDGPTRKEIAEAIQAQLKE-IGIKVEIEPLD 360 (466)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-cCceEEEEEec
Confidence 4455544433567899999999999 89999886663
No 310
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.22 E-value=1.1e+02 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.005 Sum_probs=13.7
Q ss_pred ccCCeeEEeccccCCcchHHHHHHH
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFF 94 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fl 94 (202)
.+||.+|+-|-+.-...-..+...+
T Consensus 39 ~~aDvviinTC~v~~~a~~~~~~~i 63 (444)
T PRK14325 39 EEADLILLNTCSIREKAQEKVFSEL 63 (444)
T ss_pred CCCCEEEEEcceeeehHHHHHHHHH
Confidence 4567777776665555443333333
No 311
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=40.86 E-value=1.1e+02 Score=27.44 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=16.1
Q ss_pred ChhhhccCCeeEEeccccCCc
Q 028917 65 RPHQLKEADGFLFGFPSRFGV 85 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~ 85 (202)
.++++.++|.+|++.|.-..+
T Consensus 228 ip~~l~d~d~LvI~~P~~~ls 248 (552)
T TIGR03521 228 TLADLKKFDLIVIAKPTEAFS 248 (552)
T ss_pred ccccccCcCEEEEeCCCccCC
Confidence 456678999999999974433
No 312
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=40.86 E-value=1.3e+02 Score=21.33 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=29.4
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+..+|++|+....-...-...++.|++.+.. ...++++.++++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~-----~~~~~p~ivv~n 112 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELRE-----YRPEIPCIVVAN 112 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCcEEEEEE
Confidence 4457899999998776544333445667766632 234677777766
No 313
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=40.30 E-value=1.9e+02 Score=23.00 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=30.9
Q ss_pred hccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 69 LKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 69 l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
...+|. ++.=|.|.- .-++-|+.|-.. .|++.-..++.+.+...... .....+.+.+...|+.+-
T Consensus 110 ~~~fD~-f~TDPPyT~---~G~~LFlsRgi~-----~Lk~~g~~gy~~~~~~~~s~-~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 110 RGKFDV-FFTDPPYTP---EGLKLFLSRGIE-----ALKGEGCAGYFGFTHKEASP-DKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp SS-BSE-EEE---SSH---HHHHHHHHHHHH-----TB-STT-EEEEEE-TTT--H-HHHHHHHHHHHTS--EEE
T ss_pred hcCCCE-EEeCCCCCH---HHHHHHHHHHHH-----HhCCCCceEEEEEecCcCcH-HHHHHHHHHHHHCCcCHH
Confidence 355665 455666653 568999999753 56665534444433211111 223456667777777654
No 314
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=40.19 E-value=1.3e+02 Score=23.43 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=28.1
Q ss_pred eEEEEEec----CCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYS----LYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S----~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||.+|..+ .+.....+.+.+.+.+++ .|.++.+....
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~gy~~~i~~~~ 41 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LGIEYKYVESK 41 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cCCeEEEEecC
Confidence 56666644 356778899999999999 89888876543
No 315
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.00 E-value=68 Score=26.33 Aligned_cols=36 Identities=22% Similarity=0.105 Sum_probs=28.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
++|.|++-...-....+++.+.+.+++ .|+++.+..
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 37 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRAS 37 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 378888766555678889999999988 898876643
No 316
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=39.94 E-value=84 Score=24.13 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=28.0
Q ss_pred CceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 2 ATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 2 ~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|-++.++|++| .|.|..|.+.+...-. +|..|.++.-
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~--~g~~v~vfkp 40 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKE--AGMKVLVFKP 40 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHH--cCCeEEEEec
Confidence 34678888998 5999999988777665 5777776653
No 317
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.49 E-value=84 Score=25.49 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
++++|+ |....+.+.++..+.+ .|+.|.+.+-... .+.+.+.+||.||-+++
T Consensus 160 k~vvVi-----G~gg~vGkpia~~L~~-~gatVtv~~~~t~--------------------~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 160 KHAVVV-----GRSAILGKPMAMMLLN-ANATVTICHSRTQ--------------------NLPELVKQADIIVGAVG 211 (283)
T ss_pred CEEEEE-----CCcHHHHHHHHHHHHh-CCCEEEEEeCCch--------------------hHHHHhccCCEEEEccC
No 318
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=39.49 E-value=1.6e+02 Score=24.85 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=32.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
++..+|.-..+..+...++...+.+++ .|++++.+++.+..
T Consensus 104 P~LaiIlvG~dpaS~~Yv~~k~K~~e~-~GI~~~~~~lpe~~ 144 (364)
T PLN02616 104 PGLAVILVGDRKDSATYVRNKKKACDS-VGINSFEVRLPEDS 144 (364)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHH-cCCEEEEEECCCCC
Confidence 356677666666788888999999998 89999999987753
No 319
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.37 E-value=1.5e+02 Score=22.91 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=28.9
Q ss_pred eEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||.+|+.+. +.....+.+.+.+.+++ .|.++.++....
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~-~g~~v~~~~~~~ 40 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKD-LGVDVEYRGPET 40 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHH-hCCEEEEECCCC
Confidence 566676543 56778999999999999 898888776543
No 320
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=39.11 E-value=2.1e+02 Score=23.25 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=61.9
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCC--CcHHHHhhcCCCCCCCCCCcCChhhhcc---CCeeEEeccccCCcch
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPET--LSSVILQKMKAPPKTNDVPVIRPHQLKE---ADGFLFGFPSRFGVMA 87 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~---ad~ii~gsP~y~g~~~ 87 (202)
.|-|..++..+.+.+.. .|.. .+..++.. .. + ....+|. ....++.+ -|..|+..|-
T Consensus 12 ~g~~~~~~~~~~~~~~~-~g~~-~v~~V~p~~~~~-~-v~G~~~y--------~sv~dlp~~~~~Dlavi~vpa------ 73 (286)
T TIGR01019 12 QGITGSQGSFHTEQMLA-YGTN-IVGGVTPGKGGT-T-VLGLPVF--------DSVKEAVEETGANASVIFVPA------ 73 (286)
T ss_pred ecCCcHHHHHHHHHHHh-CCCC-EEEEECCCCCcc-e-ecCeecc--------CCHHHHhhccCCCEEEEecCH------
Confidence 46677777888888877 5666 44444321 00 0 0000111 13445544 5999999983
Q ss_pred HHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 88 AQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 88 ~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
..+...++.+. -+|-+.+++.+.|.. +.....+.+....+|+.++|+..
T Consensus 74 ~~v~~~l~e~~-------~~Gvk~avIis~Gf~----e~~~~~l~~~a~~~girilGPNc 122 (286)
T TIGR01019 74 PFAADAIFEAI-------DAGIELIVCITEGIP----VHDMLKVKRYMEESGTRLIGPNC 122 (286)
T ss_pred HHHHHHHHHHH-------HCCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEEECCCC
Confidence 35555555553 156667777776642 22235677778889999998543
No 321
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=38.77 E-value=33 Score=24.36 Aligned_cols=17 Identities=35% Similarity=0.392 Sum_probs=14.2
Q ss_pred HHHHHHHHhHHHHHHHH
Q 028917 182 ELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 182 ~~~~a~~~g~~l~~~~~ 198 (202)
-.+.|.|||++|++.++
T Consensus 107 ~EADa~EFGERiaELAK 123 (151)
T PF06554_consen 107 NEADAQEFGERIAELAK 123 (151)
T ss_dssp EHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH
Confidence 35668999999999986
No 322
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=38.52 E-value=1.2e+02 Score=24.87 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=34.4
Q ss_pred HHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 91 KAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 91 k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
..|++.+.+..-.+.|.||+++++.+.+.. ......+.+.+...|..+.+
T Consensus 66 d~f~~~~~~~lv~g~L~g~~V~vV~~p~a~----~~~~~~v~~~L~~AGA~v~g 115 (308)
T PF11382_consen 66 DQFIAAVAPRLVAGRLTGRSVAVVTLPGAD----DEDVDAVRELLEQAGATVTG 115 (308)
T ss_pred HHHHHHHHHHHhcCccCCCEEEEEEcCCCC----hHHHHHHHHHHHHCCCeEEE
Confidence 455555544333468999999999875432 23466777888888998875
No 323
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=38.31 E-value=1.8e+02 Score=22.20 Aligned_cols=67 Identities=12% Similarity=0.211 Sum_probs=40.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe----c
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG----F 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g----s 79 (202)
+||+|- .-++.|..|++.+.+. |.++.+++=.+ ++ ...-+-.+.|+||++ +
T Consensus 3 ~IL~ID-NyDSFtyNLv~yl~~l-----g~~v~V~rnd~------------------~~-~~~~~~~~pd~iviSPGPG~ 57 (191)
T COG0512 3 MILLID-NYDSFTYNLVQYLREL-----GAEVTVVRNDD------------------IS-LELIEALKPDAIVISPGPGT 57 (191)
T ss_pred eEEEEE-CccchHHHHHHHHHHc-----CCceEEEECCc------------------cC-HHHHhhcCCCEEEEcCCCCC
Confidence 788875 2357888888776543 45566655321 11 111223457999996 6
Q ss_pred cccCCcchHHHHHHHH
Q 028917 80 PSRFGVMAAQCKAFFD 95 (202)
Q Consensus 80 P~y~g~~~~~~k~fld 95 (202)
|.-.|.....++.|-.
T Consensus 58 P~d~G~~~~~i~~~~~ 73 (191)
T COG0512 58 PKDAGISLELIRRFAG 73 (191)
T ss_pred hHHcchHHHHHHHhcC
Confidence 7766766666666633
No 324
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=38.29 E-value=89 Score=28.59 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=45.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh-ccCCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL-KEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ad~ii~gsP~y 82 (202)
|+.|+|+|.+|..+..|..+.+.+ . -.+.+.+.+.++. .-.+ ..-+.+++..-+|
T Consensus 48 ~~~v~~~s~tgtae~~a~~l~~~~-~--~~~~~~~~~~d~~---------------------~~~l~~~~~l~~~~~at~ 103 (645)
T KOG1158|consen 48 KATVLYGSQTGTAEDFAKRLSEIF-A--RFELKVLKVADYD---------------------LYALEDHEKLLVVVLATY 103 (645)
T ss_pred eEEEEeccCCCCHHHHHHHHHHHh-h--hccccceeecchh---------------------hcccccccceeeeeeehh
Confidence 688999999999988888888887 4 1233444343320 0111 3446677777777
Q ss_pred C-CcchHHHHHHHHhhh
Q 028917 83 F-GVMAAQCKAFFDATY 98 (202)
Q Consensus 83 ~-g~~~~~~k~fld~~~ 98 (202)
+ |..|..-..|.+.+.
T Consensus 104 g~gd~~dn~~~f~~~l~ 120 (645)
T KOG1158|consen 104 GEGDPPDNAEAFYQSLT 120 (645)
T ss_pred cCCCCCccHHHHHHHHh
Confidence 4 777777666666653
No 325
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.18 E-value=1e+02 Score=23.27 Aligned_cols=45 Identities=29% Similarity=0.427 Sum_probs=28.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+||-+ ..||...++++ ++. .|+++++++ + .+++.++|+||+.-|
T Consensus 2 i~vid~-g~gn~~~~~~~----l~~-~g~~v~~~~--~-----------------------~~~l~~~d~lilpG~ 46 (199)
T PRK13181 2 IAIIDY-GAGNLRSVANA----LKR-LGVEAVVSS--D-----------------------PEEIAGADKVILPGV 46 (199)
T ss_pred EEEEeC-CCChHHHHHHH----HHH-CCCcEEEEc--C-----------------------hHHhccCCEEEECCC
Confidence 666642 35777766664 445 677777652 1 234678999998553
No 326
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=38.16 E-value=1.6e+02 Score=26.69 Aligned_cols=73 Identities=10% Similarity=0.059 Sum_probs=45.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
+++++|.+..-.+..+.+.+.+.+.. +-.+++.+++.+. +. .....+..+++||+..+-..
T Consensus 55 ~l~~l~d~~~~~s~~~~~n~~kil~~-~K~~~~~id~~~~-----------------~~-~~~p~l~~Y~~vII~~~~l~ 115 (585)
T PF09960_consen 55 KLLILYDSNGELSMDIKENFKKILEY-MKIPYDTIDIAEF-----------------IK-SSIPSLSDYRGVIILTTDLD 115 (585)
T ss_pred eEEEEECCCChHHHHHHHHHHHHHHH-hccccEeeecccc-----------------cc-ccCCcccceeEEEEEecccc
Confidence 45567766555567777788888877 6667788887642 11 13456778998888776543
Q ss_pred CcchHHHHHHHH
Q 028917 84 GVMAAQCKAFFD 95 (202)
Q Consensus 84 g~~~~~~k~fld 95 (202)
.--...+++|+.
T Consensus 116 ~l~~~~i~~yV~ 127 (585)
T PF09960_consen 116 PLGNEAIMNYVE 127 (585)
T ss_pred ccChHHHHHHHH
Confidence 222245555554
No 327
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=37.89 E-value=64 Score=20.75 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=38.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCC---ceEEEE-EccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLG---VEATLW-QVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g---~~v~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
||.+| ..|| |+..+++++.+ .| .++.+. +-................. .....+.+.++|.||++.
T Consensus 1 kI~iI---G~G~---mg~al~~~l~~-~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~advvilav 69 (96)
T PF03807_consen 1 KIGII---GAGN---MGSALARGLLA-SGIKPHEVIIVSSRSPEKAAELAKEYGVQAT----ADDNEEAAQEADVVILAV 69 (96)
T ss_dssp EEEEE---STSH---HHHHHHHHHHH-TTS-GGEEEEEEESSHHHHHHHHHHCTTEEE----SEEHHHHHHHTSEEEE-S
T ss_pred CEEEE---CCCH---HHHHHHHHHHH-CCCCceeEEeeccCcHHHHHHHHHhhccccc----cCChHHhhccCCEEEEEE
Confidence 45555 3455 77788888877 67 666654 2221100111111110000 001345677899999999
Q ss_pred cccCCcchHHHHHHHHhh
Q 028917 80 PSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~ 97 (202)
|-+ .+..+++.+
T Consensus 70 ~p~------~~~~v~~~i 81 (96)
T PF03807_consen 70 KPQ------QLPEVLSEI 81 (96)
T ss_dssp -GG------GHHHHHHHH
T ss_pred CHH------HHHHHHHHH
Confidence 865 455555555
No 328
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=37.83 E-value=1.4e+02 Score=27.75 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHH
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKA 92 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~ 92 (202)
+|+.-..|..+++.|++ .|++++++|+....|.+ .. .+.+.+.+++.||..==-+.|++-+.+..
T Consensus 575 ~G~mv~~Al~AA~~L~~-~GI~vtVIdlr~ikPLD-------------~e-~I~~~~~k~~~vVTvEE~~~GG~Gs~Va~ 639 (701)
T PLN02225 575 YGAMVQNCLHAHSLLSK-LGLNVTVADARFCKPLD-------------IK-LVRDLCQNHKFLITVEEGCVGGFGSHVAQ 639 (701)
T ss_pred ccHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCC-------------HH-HHHHHHhhcCeEEEEcCCCCCchHHHHHH
Confidence 67777788888888888 89999999998754421 11 13455677777777643334777777777
Q ss_pred HHHh
Q 028917 93 FFDA 96 (202)
Q Consensus 93 fld~ 96 (202)
++-.
T Consensus 640 ~l~~ 643 (701)
T PLN02225 640 FIAL 643 (701)
T ss_pred HHHh
Confidence 7754
No 329
>PRK09273 hypothetical protein; Provisional
Probab=37.64 E-value=52 Score=25.49 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=29.1
Q ss_pred ceEEEEE-ecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVY-YSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy-~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|||.+|. .|+......+.+.+.+.+++ .|.+| +|+..
T Consensus 1 mkiali~e~sqa~kn~~i~~~L~~~L~~-~G~eV--~D~G~ 38 (211)
T PRK09273 1 MKIALINENSQAAKNAIIYEALKKVADP-KGHEV--FNYGM 38 (211)
T ss_pred CeEEeecccchhhhhHHHHHHHHHHHHH-CCCEE--EEeCC
Confidence 3888888 56677888999999999999 88754 66653
No 330
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=37.58 E-value=1.4e+02 Score=20.63 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=24.4
Q ss_pred eEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+++|+-.. .+..+ .+.+.+.+.. .+.+++++....
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~-~~~~~~~~~t~~ 38 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRA-AGIDYEVIETES 38 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHH-TTCEEEEEEESS
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHH-cCCceEEEEEec
Confidence 466766444 34444 4888888888 788888877654
No 331
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=37.57 E-value=1.5e+02 Score=20.94 Aligned_cols=62 Identities=21% Similarity=0.098 Sum_probs=30.3
Q ss_pred eeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcC
Q 028917 74 GFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHG 139 (202)
Q Consensus 74 ~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g 139 (202)
.||+|.+.+....++.++.=++....++. ++..--++.|+|...+....-...|...+...|
T Consensus 3 IvVLG~~~~~~~~~~~~~~R~~~a~~l~~----~~~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~g 64 (150)
T cd06259 3 IVVLGGGVNGDGPSPILAERLDAAAELYR----AGPAPKLIVSGGQGPGEGYSEAEAMARYLIELG 64 (150)
T ss_pred EEEeCCccCCCCCChHHHHHHHHHHHHHH----hCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHcC
Confidence 57889998876666444333333332221 233333555555432211112345566666665
No 332
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=37.48 E-value=54 Score=26.20 Aligned_cols=58 Identities=12% Similarity=-0.023 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEEeccccCCcchHHHHHHHH
Q 028917 18 TMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFD 95 (202)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld 95 (202)
.=++.+.+.+++ .|.++..+.+-+.-|. ++.+ ......+.++|.|||.||. .++.|+.
T Consensus 28 ~q~~~l~~~L~~-~G~~~~~~P~i~i~~~------------~~~~~~~~l~~l~~~d~iiftS~N-------AV~~~~~ 86 (266)
T PRK08811 28 GEHAPLRRAVAR-HGGRLLALSPWRLQRL------------DTAQARDALRQALAAPIVVFTSPA-------AVRAAHR 86 (266)
T ss_pred HHHHHHHHHHHH-CCCcEEEcCceeecCC------------CchhHHHHHhhcccCCEEEEECHH-------HHHHHHH
Confidence 344566677777 7876654433111010 0000 0123567899999999975 4566654
No 333
>PRK15456 universal stress protein UspG; Provisional
Probab=37.37 E-value=83 Score=21.89 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=26.1
Q ss_pred CCceEEEEE-ecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVY-YSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy-~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|++||++-+ +|...++.++++...+-++. +.++.++.+-+
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~--~~~l~llhv~~ 41 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQD--DGVIHLLHVLP 41 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhc--CCeEEEEEEec
Confidence 788898876 55444677777776665543 34677777643
No 334
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=37.22 E-value=61 Score=25.74 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.1
Q ss_pred eEEEEEec--C--CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYS--L--YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S--~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++..+ + .|..++.+..+++++.+ .|.+|.++....
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 42 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAK-RGHEVAVLTAGE 42 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHh-cCCceEEEeCCC
Confidence 56777533 3 36788889999999998 899999987754
No 335
>PRK12361 hypothetical protein; Provisional
Probab=37.20 E-value=87 Score=27.85 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=26.1
Q ss_pred CCceEEEEE--ecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVY--YSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy--~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|++++++|+ .|..|...+..+.+.+.+++ . .+++++...
T Consensus 241 ~~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~-~-~~~~v~~t~ 281 (547)
T PRK12361 241 IHKRAWLIANPVSGGGKWQEYGEQIQRELKA-Y-FDLTVKLTT 281 (547)
T ss_pred cCCceEEEECCCCCCCcHHHHHHHHHHHHhc-C-CceEEEECC
Confidence 345777666 34456677888999988886 3 566655544
No 336
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=36.94 E-value=79 Score=26.48 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=26.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
++||. +|.+...+..+++.+++ .|+++.++++....|
T Consensus 249 ~~iva---~Gs~~~~a~eA~~~L~~-~Gi~v~vi~~~~l~P 285 (352)
T PRK07119 249 LVLVA---YGTSARIAKSAVDMARE-EGIKVGLFRPITLWP 285 (352)
T ss_pred EEEEE---cCccHHHHHHHHHHHHH-cCCeEEEEeeceecC
Confidence 45553 45555666777777787 799999999876544
No 337
>COG3412 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.89 E-value=61 Score=22.90 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=23.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||-.|+||.+| +.+|+-+.+-+++..+ +|.+....-
T Consensus 1 ~~vgiVIVSHS-----~~lAeGv~~li~em~~-dv~i~~~gG 36 (129)
T COG3412 1 MMVGIVIVSHS-----KELAEGVAELIREMAG-DVPITYAGG 36 (129)
T ss_pred CcceEEEEeCC-----HHHHHHHHHHHHHHhC-CCceEEecC
Confidence 66678888776 5667766666666444 666666543
No 338
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=36.79 E-value=91 Score=24.39 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=29.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++|+++.+||--..++=.-.+++.++. .++.+++++..+
T Consensus 108 ~riVvFvGSpi~e~ekeLv~~akrlkk-~~Vaidii~FGE 146 (259)
T KOG2884|consen 108 QRIVVFVGSPIEESEKELVKLAKRLKK-NKVAIDIINFGE 146 (259)
T ss_pred eEEEEEecCcchhhHHHHHHHHHHHHh-cCeeEEEEEecc
Confidence 368888899976666655566777777 788888888876
No 339
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=36.75 E-value=72 Score=21.74 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=22.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATL 37 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~ 37 (202)
+-++|..|.+|+|+.+.+.+... ++ .|+.+-.
T Consensus 44 ~dl~I~iS~SG~t~e~i~~~~~a-~~-~g~~iI~ 75 (119)
T cd05017 44 KTLVIAVSYSGNTEETLSAVEQA-KE-RGAKIVA 75 (119)
T ss_pred CCEEEEEECCCCCHHHHHHHHHH-HH-CCCEEEE
Confidence 45677789999999988876655 44 5765433
No 340
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=36.74 E-value=79 Score=28.83 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=28.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCce-EEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVE-ATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~-v~~~~l 40 (202)
+|++++++|..|.+..+...+.+.+++ .+.+ +++.+.
T Consensus 379 kkilvVC~sG~GsS~m~~~~l~~~l~~-~~i~~i~i~~~ 416 (639)
T PRK15083 379 RKIIVACDAGMGSSAMGAGVLRKKVQD-AGLSQISVTNS 416 (639)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHH-cCCCeeEEEEe
Confidence 379999999999888888888888887 5554 555543
No 341
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=36.62 E-value=1.7e+02 Score=21.67 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 12 LYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 12 ~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
..+||..+++.+ ++ .|++++++...
T Consensus 7 g~~~~~~l~~~l----~~-~g~~~~~~~~~ 31 (188)
T TIGR00888 7 GSQYTQLIARRL----RE-LGVYSELVPNT 31 (188)
T ss_pred CchHHHHHHHHH----HH-cCCEEEEEeCC
Confidence 357787777666 44 57778877654
No 342
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=36.15 E-value=2.1e+02 Score=22.44 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=28.9
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++..+. .|-.+..+..+++.+.+ .|.++.++....
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~-~~~~v~~~~~~~ 39 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDR-DRFEHVVISLTD 39 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhh-ccceEEEEecCc
Confidence 567666554 47788889999999977 788888887654
No 343
>cd08490 PBP2_NikA_DppA_OppA_like_3 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=36.05 E-value=1.6e+02 Score=25.14 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=26.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+-+++.+.......+++.|++.+++ .|+++++..+.
T Consensus 323 l~l~~~~~~~~~~~~a~~i~~~l~~-~Gi~v~~~~~~ 358 (470)
T cd08490 323 LTLLTYTSRPELPPIAEAIQAQLKK-IGIDVEIRVVE 358 (470)
T ss_pred EEEEecCCCCchHHHHHHHHHHHHH-cCceEEEEEee
Confidence 4454444445568899999999999 89998876653
No 344
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.02 E-value=76 Score=25.83 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=31.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
+++||-.|. .+.+-++.-+.+ .|+.|++.+.... .+.+.+.+||.||.+.+.
T Consensus 159 ~vvVvGrs~-----~VG~Pla~lL~~-~gAtVtv~hs~t~--------------------~l~~~~~~ADIvV~AvG~ 210 (285)
T PRK14191 159 DVVIIGASN-----IVGKPLAMLMLN-AGASVSVCHILTK--------------------DLSFYTQNADIVCVGVGK 210 (285)
T ss_pred EEEEECCCc-----hhHHHHHHHHHH-CCCEEEEEeCCcH--------------------HHHHHHHhCCEEEEecCC
Confidence 566664443 333344444445 6777777654321 134678999999999854
No 345
>PRK03995 hypothetical protein; Provisional
Probab=35.88 E-value=1.5e+02 Score=23.95 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=17.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHh
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGA 27 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~ 27 (202)
+++||+....--...+++.+.+-.
T Consensus 2 m~~iv~S~~DpAs~~i~~~L~~~~ 25 (267)
T PRK03995 2 MYLIVYSKKDPASQNIKELLIELF 25 (267)
T ss_pred eEEEEEeCCChhhHHHHHHHHHhc
Confidence 378888777776777777777754
No 346
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=35.88 E-value=64 Score=25.27 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=30.2
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++..+. .|.....+..+++.+.+ .|.+|.++....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~-~g~~v~v~~~~~ 39 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDK-RGYDVTLVVLRD 39 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHh-cCceEEEEEcCC
Confidence 577777665 67778888889999977 799999987654
No 347
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=35.86 E-value=2.8e+02 Score=23.80 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
||+||+|+. .| .++..+.+.+++ .|+++-.++-
T Consensus 1 ~~kkili~g---~g---~~~~~~~~aa~~-lG~~vv~~~~ 33 (449)
T TIGR00514 1 MLDKILIAN---RG---EIALRILRACKE-LGIKTVAVHS 33 (449)
T ss_pred CcceEEEeC---CC---HHHHHHHHHHHH-cCCeEEEEEC
Confidence 888999984 23 356677788888 7988877765
No 348
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=35.77 E-value=2.8e+02 Score=23.69 Aligned_cols=67 Identities=16% Similarity=0.025 Sum_probs=39.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEeccccC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gsP~y~ 83 (202)
++|.++|..+ .++...+.+++ .|..|-++++....|. |. .+.+-++.++.|++.-=.+.
T Consensus 265 viV~~GS~~~----~~keav~~LR~-~G~kVGllri~~~rPF---------------P~~~i~~~l~~~k~ViVvE~n~s 324 (394)
T PRK08367 265 IFVTMGSLAG----TLKEFVDKLRE-EGYKVGAAKLTVYRPF---------------PVEEIRALAKKAKVLAFLEKNIS 324 (394)
T ss_pred EEEEeCccHH----HHHHHHHHHHh-cCCcceeEEEeEecCC---------------CHHHHHHHHccCCEEEEEeCCCC
Confidence 4455555554 55555666676 7888889888765442 11 13455678888887644433
Q ss_pred CcchHHHH
Q 028917 84 GVMAAQCK 91 (202)
Q Consensus 84 g~~~~~~k 91 (202)
.+..++|.
T Consensus 325 ~g~~g~l~ 332 (394)
T PRK08367 325 FGLGGAVF 332 (394)
T ss_pred CCCCCcHH
Confidence 23345553
No 349
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=35.70 E-value=1.6e+02 Score=20.99 Aligned_cols=96 Identities=17% Similarity=0.052 Sum_probs=47.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc-CCCcHHHHhhcCC-CCCCCCCCcCChhh--hccCCeeEEec
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP-ETLSSVILQKMKA-PPKTNDVPVIRPHQ--LKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~--l~~ad~ii~gs 79 (202)
||+|+- ..|....=+..+.+.++. .|.+++++... .. + ......- ... .|. ..++ ..++|+|++..
T Consensus 1 ~v~il~--~~gf~~~e~~~~~~~l~~-a~~~v~~vs~~~~~-~--v~~~~g~~~i~-~d~---~~~~~~~~~~D~lvvpG 70 (165)
T cd03134 1 KVAILA--ADGFEDVELTYPLYRLRE-AGAEVVVAGPEAGG-E--IQGKHGYDTVT-VDL---TIADVDADDYDALVIPG 70 (165)
T ss_pred CEEEEc--CCCchHHHHHHHHHHHHH-CCCEEEEEccCCCc-c--cccCcCceeec-CCC---ChHHCCHHHCCEEEECC
Confidence 345544 345544445556666777 78888888765 31 0 0000000 001 010 1222 24789887765
Q ss_pred -cccC-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 80 -PSRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 80 -P~y~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
|... -.-...+..||.+.. -++|+++.+++
T Consensus 71 G~~~~~~~~~~~~~~~l~~~~-------~~~~~i~~ic~ 102 (165)
T cd03134 71 GTNPDKLRRDPDAVAFVRAFA-------EAGKPVAAICH 102 (165)
T ss_pred CCChhhhccCHHHHHHHHHHH-------HcCCeEEEEch
Confidence 3211 122355677776653 25676666554
No 350
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=35.65 E-value=1.2e+02 Score=25.35 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=16.7
Q ss_pred CCcCChhhhccCCeeEEeccc
Q 028917 61 VPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 61 ~~~~~~~~l~~ad~ii~gsP~ 81 (202)
+|+...+.++++|+|+||+-.
T Consensus 55 lpeetl~~~~~~DaiL~Gavg 75 (348)
T COG0473 55 LPEETLESLKKADAILFGAVG 75 (348)
T ss_pred CCHHHHHHHHhCCEEEEcccC
Confidence 455568899999999999644
No 351
>PRK10126 tyrosine phosphatase; Provisional
Probab=35.55 E-value=55 Score=23.46 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=18.9
Q ss_pred CCceEEEEEecCCChH--HHHHHHHHHHhh
Q 028917 1 MATKIYIVYYSLYGHV--ETMAREVQRGAN 28 (202)
Q Consensus 1 M~~kiliiy~S~~G~T--~~la~~i~~~~~ 28 (202)
|++|||.|. +||+ ..+|+++.+.+.
T Consensus 1 ~~~~iLFVC---~gN~cRSpmAEa~~~~~~ 27 (147)
T PRK10126 1 MFNNILVVC---VGNICRSPTAERLLQRYH 27 (147)
T ss_pred CCCeEEEEc---CCcHhHHHHHHHHHHHhc
Confidence 667888886 6776 468998888764
No 352
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=35.36 E-value=81 Score=24.82 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=28.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++..+ .|........+++.+.+ .|.+|.++....
T Consensus 1 kIl~i~~~-~~g~~~~~~~l~~~L~~-~g~~v~~~~~~~ 37 (359)
T cd03808 1 KILHIVTV-DGGLYSFRLPLIKALRA-AGYEVHVVAPPG 37 (359)
T ss_pred CeeEEEec-chhHHHHHHHHHHHHHh-cCCeeEEEecCC
Confidence 57887777 55566677778888877 799999887654
No 353
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=35.29 E-value=83 Score=20.93 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=25.0
Q ss_pred ceEEEEEec-CCChH-HHHHHHHHHHhhccCC---ceEEEEEccC
Q 028917 3 TKIYIVYYS-LYGHV-ETMAREVQRGANSVLG---VEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S-~~G~T-~~la~~i~~~~~~~~g---~~v~~~~l~~ 42 (202)
|++++|..| |+++. ...+-.++..+.. .| .+|.++-..+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~g~ 44 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAA-MGDYGHDVVVFFHGD 44 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHH-TTHTTSEEEEEE-GG
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHH-cCCCCCcEEEEEEch
Confidence 377777765 46654 5666666666666 67 8888776654
No 354
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=35.06 E-value=2.1e+02 Score=22.44 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=49.7
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe-ccccCC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG-FPSRFG 84 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g-sP~y~g 84 (202)
.+|.++..|...-+-+.+...+-+.+| .+++||...-|.+ ...+..++-...+++ |-.---
T Consensus 106 ~vVigtveGDvHdIGk~iV~~ml~~aG--fevidLG~dvP~e----------------~fve~a~e~k~d~v~~SalMTt 167 (227)
T COG5012 106 KVVIGTVEGDVHDIGKNIVATMLEAAG--FEVIDLGRDVPVE----------------EFVEKAKELKPDLVSMSALMTT 167 (227)
T ss_pred eEEEEeecccHHHHHHHHHHHHHHhCC--cEEEecCCCCCHH----------------HHHHHHHHcCCcEEechHHHHH
Confidence 466778888888787766666554366 5678997644432 122333333333333 444455
Q ss_pred cchHHHHHHHHhhhhhhhhccCCCCce
Q 028917 85 VMAAQCKAFFDATYELWASQALAGKPA 111 (202)
Q Consensus 85 ~~~~~~k~fld~~~~~~~~~~l~gK~~ 111 (202)
.++. ++..++.+.. .-+|++..
T Consensus 168 tm~~-~~~viE~L~e----eGiRd~v~ 189 (227)
T COG5012 168 TMIG-MKDVIELLKE----EGIRDKVI 189 (227)
T ss_pred HHHH-HHHHHHHHHH----cCCccCeE
Confidence 5665 8999998853 35677754
No 355
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=35.06 E-value=56 Score=26.11 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=23.2
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCC
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGF 119 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~ 119 (202)
|.+.....+.++.|+++.. .+.|+++++++++|.
T Consensus 8 p~~~~d~~s~~~eFi~~q~------s~~~rrIVlVTSGGT 41 (302)
T KOG2728|consen 8 PESLDDPGSLIEEFIKLQA------SLQGRRIVLVTSGGT 41 (302)
T ss_pred cccccchhHHHHHHHHHHh------hccCceEEEEecCCe
Confidence 4455556677899999874 567777766666553
No 356
>PRK08084 DNA replication initiation factor; Provisional
Probab=34.85 E-value=57 Score=25.39 Aligned_cols=36 Identities=6% Similarity=0.027 Sum_probs=25.5
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.+++||-+ .|.|. ++.+++..+.+ .|..+.++.+.+
T Consensus 47 ~l~l~Gp~G~GKTh-Ll~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLWSREGAGRSH-LLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHh-CCCeEEEEEHHH
Confidence 56778665 78887 66677777666 677787777754
No 357
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=34.58 E-value=79 Score=27.73 Aligned_cols=62 Identities=5% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHh
Q 028917 17 ETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDA 96 (202)
Q Consensus 17 ~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~ 96 (202)
+.=+..+++.|++ .|+++-.+..-+..+ ....+...+.+.+||-|||.||- -++.|+++
T Consensus 260 ~~q~~~l~~~L~~-~GA~v~~~P~i~~~~-------------~~~~~~~l~~l~~ydwlvFTS~n-------gV~~Ff~~ 318 (474)
T PRK07168 260 TNKTSVMKQKLQE-AGAEIYQIPTFKKEE-------------YTLTLEQINEIFNVNRLVFCSAE-------SVEILMQS 318 (474)
T ss_pred HHHHHHHHHHHHH-cCCEEEEeccEEeeC-------------CCCcHHHHHHhccCCEEEEcCHH-------HHHHHHHH
Confidence 3345667788888 787654332211100 00011235678999999999986 68999999
Q ss_pred hhh
Q 028917 97 TYE 99 (202)
Q Consensus 97 ~~~ 99 (202)
+..
T Consensus 319 l~~ 321 (474)
T PRK07168 319 CSK 321 (474)
T ss_pred HHH
Confidence 854
No 358
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=34.24 E-value=1.1e+02 Score=27.87 Aligned_cols=62 Identities=21% Similarity=0.109 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhhccCCc-eEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHH
Q 028917 15 HVETMAREVQRGANSVLGV-EATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAF 93 (202)
Q Consensus 15 ~T~~la~~i~~~~~~~~g~-~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~f 93 (202)
++..+|.+....+++ .|+ -|++.-|.+. ....=..||++.+=+|+--++-|..+|.|
T Consensus 162 ~~~e~a~~llpYl~e-lG~T~IELMPv~e~---------------------p~~~sWGYq~~g~yAp~sryGtPedfk~f 219 (628)
T COG0296 162 GYFELAIELLPYLKE-LGITHIELMPVAEH---------------------PGDRSWGYQGTGYYAPTSRYGTPEDFKAL 219 (628)
T ss_pred CHHHHHHHHhHHHHH-hCCCEEEEcccccC---------------------CCCCCCCCCcceeccccccCCCHHHHHHH
Confidence 689999999999999 886 3566666541 12234789999999999988889999999
Q ss_pred HHhhh
Q 028917 94 FDATY 98 (202)
Q Consensus 94 ld~~~ 98 (202)
+|.+-
T Consensus 220 VD~aH 224 (628)
T COG0296 220 VDAAH 224 (628)
T ss_pred HHHHH
Confidence 99984
No 359
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.12 E-value=91 Score=25.47 Aligned_cols=36 Identities=17% Similarity=0.033 Sum_probs=28.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
+||.|++-...-+...+++.+.+.+++ .|+++.+.+
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~ 41 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDE 41 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 468888876666788899999999988 898877643
No 360
>PRK08655 prephenate dehydrogenase; Provisional
Probab=33.98 E-value=90 Score=26.98 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=42.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||.||-++ | .+...++..+.+ .|.+|.+++..............+.. .....+.+.++|.||++.|..
T Consensus 2 kI~IIGG~--G---~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~gv~~-----~~~~~e~~~~aDvVIlavp~~- 69 (437)
T PRK08655 2 KISIIGGT--G---GLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKELGVEY-----ANDNIDAAKDADIVIISVPIN- 69 (437)
T ss_pred EEEEEecC--C---HHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHcCCee-----ccCHHHHhccCCEEEEecCHH-
Confidence 67776322 3 366677777777 78888887754311111111111100 001234578899999999974
Q ss_pred CcchHHHHHHHHhhh
Q 028917 84 GVMAAQCKAFFDATY 98 (202)
Q Consensus 84 g~~~~~~k~fld~~~ 98 (202)
.+..+++.+.
T Consensus 70 -----~~~~vl~~l~ 79 (437)
T PRK08655 70 -----VTEDVIKEVA 79 (437)
T ss_pred -----HHHHHHHHHH
Confidence 4456666653
No 361
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=33.90 E-value=96 Score=26.01 Aligned_cols=36 Identities=31% Similarity=0.149 Sum_probs=20.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+||.|+=.|.|+-.+ +.+-+..+..+|+.++.-.
T Consensus 1 ~~~kV~IvGasGYtG~E-----L~rlL~~Hp~ve~~~~ss~ 36 (349)
T COG0002 1 MMIKVGIVGASGYTGLE-----LLRLLAGHPDVELILISSR 36 (349)
T ss_pred CCceEEEEcCCCCcHHH-----HHHHHhcCCCeEEEEeech
Confidence 67899999888764332 3333433244555554433
No 362
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=33.87 E-value=1.7e+02 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=27.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|+.|+|-|.+|. ..++.+.+.+++ .|.++..+.+.
T Consensus 125 k~vaiiYd~~~~~--~~lq~l~~~~~~-~g~~v~~~~~~ 160 (371)
T cd06388 125 NRFVFLYDTDRGY--SILQAIMEKAGQ-NGWQVSAICVE 160 (371)
T ss_pred eEEEEEecCCccH--HHHHHHHHhhHh-cCCeeeeEEec
Confidence 4789999877776 448888888888 78777665554
No 363
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=33.79 E-value=1.9e+02 Score=21.79 Aligned_cols=11 Identities=45% Similarity=0.763 Sum_probs=8.7
Q ss_pred hccCCeeEEec
Q 028917 69 LKEADGFLFGF 79 (202)
Q Consensus 69 l~~ad~ii~gs 79 (202)
+.++|+|||.-
T Consensus 38 l~~~D~lilPG 48 (198)
T cd03130 38 LPDADGLYLGG 48 (198)
T ss_pred CCCCCEEEECC
Confidence 44699999986
No 364
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=33.73 E-value=1e+02 Score=26.43 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+||||+..+ .++..+.+.+++ .|+++..++..
T Consensus 1 ~~k~iLi~g~g------~~a~~i~~aa~~-~G~~vv~~~~~ 34 (451)
T PRK08591 1 MFDKILIANRG------EIALRIIRACKE-LGIKTVAVHST 34 (451)
T ss_pred CcceEEEECCC------HHHHHHHHHHHH-cCCeEEEEcCh
Confidence 78899999533 245667777887 78877666443
No 365
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=33.72 E-value=94 Score=20.64 Aligned_cols=41 Identities=22% Similarity=0.102 Sum_probs=28.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
|-++|+|.+. .+.++..+++...+-+.. .+.++.++.+.+.
T Consensus 1 M~~~Ilv~~d-~~~~~~~al~~a~~la~~-~~~~i~~l~v~~~ 41 (140)
T PF00582_consen 1 MYKRILVAID-GSEESRRALRFALELAKR-SGAEITLLHVIPP 41 (140)
T ss_dssp -TSEEEEEES-SSHHHHHHHHHHHHHHHH-HTCEEEEEEEEES
T ss_pred CCCEEEEEEC-CCHHHHHHHHHHHHHHHh-hCCeEEEEEeecc
Confidence 5467877763 445566778777777776 6888988888653
No 366
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=33.43 E-value=1.9e+02 Score=21.04 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=44.6
Q ss_pred ceEEEEEecC-----------CCh--HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh
Q 028917 3 TKIYIVYYSL-----------YGH--VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL 69 (202)
Q Consensus 3 ~kiliiy~S~-----------~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 69 (202)
+||+|+++-. ||+ -+.+-+.+.+.+++ .|++++++.-+. ..+.+. .+.+..
T Consensus 2 ~~ilvinGPNLN~LG~REp~iYG~~tl~~i~~~~~~~a~~-~g~~~~~~QSN~--EGelId-------------~i~~a~ 65 (146)
T PRK13015 2 GKILVLNGPNLNLLGTREPAIYGHETLADVEALCRAAAEA-LGLEVEFRQSNH--EGELID-------------WIHEAR 65 (146)
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEeeCc--HHHHHH-------------HHHHhh
Confidence 4789988741 553 35677777777777 788888877543 111110 122334
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.++|+||+=.--| ...|-.+..-+..+
T Consensus 66 ~~~dgiIINpga~-THtSiAl~DAl~~~ 92 (146)
T PRK13015 66 GDVAGIVINPGAY-THTSVAIRDALAAL 92 (146)
T ss_pred hcCCEEEEcchHH-hhhHHHHHHHHHcC
Confidence 5678977755444 22344456555544
No 367
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=33.41 E-value=1.8e+02 Score=20.98 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=26.4
Q ss_pred hhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 67 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
..+..+|++|+....-...-....+.++.++.. ...+.++++.++++-
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~---~~~~~~~p~viv~NK 125 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLA---HEDLRKAVLLVLANK 125 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCCEEEEEEC
Confidence 346899999998765432211222333333321 123567888787763
No 368
>PLN02347 GMP synthetase
Probab=33.30 E-value=3.6e+02 Score=24.17 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=18.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+|+||-+ ..++|..+++++. + .|+.++++.-
T Consensus 12 ~IlIID~-G~~~t~~I~r~lr----e-lgv~~~v~p~ 42 (536)
T PLN02347 12 VVLILDY-GSQYTHLITRRVR----E-LGVYSLLLSG 42 (536)
T ss_pred EEEEEEC-CCcHHHHHHHHHH----H-CCCeEEEEEC
Confidence 5777652 2456766666554 5 5777777654
No 369
>PRK06761 hypothetical protein; Provisional
Probab=33.28 E-value=1.1e+02 Score=24.89 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=25.6
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
||.++.+|.|-+ .|.| .+++.+++.+.. .|.+++.+.
T Consensus 1 mm~~lIvI~G~~GsGKT-Tla~~L~~~L~~-~g~~v~~~~ 38 (282)
T PRK06761 1 MMTKLIIIEGLPGFGKS-TTAKMLNDILSQ-NGIEVELYL 38 (282)
T ss_pred CCCcEEEEECCCCCCHH-HHHHHHHHhcCc-CceEEEEEe
Confidence 676666666643 5654 478888888887 788777643
No 370
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=33.26 E-value=1.1e+02 Score=27.96 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=20.8
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhh
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYE 99 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~ 99 (202)
...+.+||.|||.||. -++.|++.+..
T Consensus 50 l~~L~~yd~iIFTS~n-------AV~~~~~~l~~ 76 (656)
T PRK06975 50 LARLSDYALVVFVSPN-------AVDRALARLDA 76 (656)
T ss_pred HHhCCCCCEEEEECHH-------HHHHHHHHHHh
Confidence 3567899999999986 57777777643
No 371
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=32.95 E-value=85 Score=19.50 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=19.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEAT 36 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~ 36 (202)
+-+++..|..|+|..+.+.+ +.+++ .|+.+-
T Consensus 48 ~d~~i~iS~sg~t~~~~~~~-~~a~~-~g~~ii 78 (87)
T cd04795 48 GDVVIALSYSGRTEELLAAL-EIAKE-LGIPVI 78 (87)
T ss_pred CCEEEEEECCCCCHHHHHHH-HHHHH-cCCeEE
Confidence 45666778888887766644 55555 565543
No 372
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=32.92 E-value=61 Score=25.80 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=29.8
Q ss_pred eEEEEEecC---CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL---YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~---~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||++|..+. .|.....+..+++.+.+ .|.+|.++....
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~-~g~~v~v~~~~~ 41 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAK-LGHEVTVATTDA 41 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHh-cCCcEEEEecCC
Confidence 577777653 46678888888999988 899999988765
No 373
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=32.57 E-value=3e+02 Score=23.01 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=42.5
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhhhhhhhh----ccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWAS----QALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~----~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
.....+.+-+|-|.++...-....+..+...+.. ..-..+.+-+++.... .. ..+.++.+.|...|+.+..
T Consensus 110 ~~~~vv~~~~~gf~~~~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~--~~--~d~~el~~ll~~~G~~v~~ 184 (399)
T cd00316 110 IGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNL--GG--GDLRELKRLLEEMGIRVNA 184 (399)
T ss_pred hCCceEEeeCCCCcccHHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCC--ch--hhHHHHHHHHHHcCCcEEE
Confidence 4678899999999877665555555555433321 1223344555544322 11 2356777788888998864
No 374
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=32.52 E-value=1.9e+02 Score=20.88 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=23.3
Q ss_pred hccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 69 LKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 69 l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
+.++|++|+..-.-.-.-....+.++..+. ....+.+.++.++++
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~---~~~~~~~~piilv~N 122 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRML---NEDELRDAVILVFAN 122 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHh---hCHhhcCCcEEEEEe
Confidence 689999999644322111122233443332 112345677777766
No 375
>PHA03075 glutaredoxin-like protein; Provisional
Probab=32.51 E-value=99 Score=21.59 Aligned_cols=34 Identities=15% Similarity=0.229 Sum_probs=21.0
Q ss_pred CceEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 2 ATKIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 2 ~~kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|++++|++|=|. |-++.+-+ +.+.+++ +.++.++
T Consensus 1 mK~tLILfGKP~C~vCe~~s~-~l~~led----eY~ilrV 35 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISE-ALKELED----EYDILRV 35 (123)
T ss_pred CCceEEEeCCcccHHHHHHHH-HHHHhhc----cccEEEE
Confidence 458999999885 55554444 4466665 3444444
No 376
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=32.49 E-value=65 Score=23.06 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=18.6
Q ss_pred CCceEEEEEecCCChH--HHHHHHHHHHhh
Q 028917 1 MATKIYIVYYSLYGHV--ETMAREVQRGAN 28 (202)
Q Consensus 1 M~~kiliiy~S~~G~T--~~la~~i~~~~~ 28 (202)
|++|||.|. +||+ ..||+++.+.+.
T Consensus 1 ~~~~ILfVC---~gN~cRSpmAEa~~~~~~ 27 (144)
T PRK11391 1 KFNSILVVC---TGNICRSPIGERLLRKRL 27 (144)
T ss_pred CCCeEEEEc---CCcHhHHHHHHHHHHHhc
Confidence 677899887 5665 468888888764
No 377
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=32.48 E-value=3.3e+02 Score=23.51 Aligned_cols=88 Identities=24% Similarity=0.158 Sum_probs=49.4
Q ss_pred eEEEEEecCC---C----hHHHHHHHHHHHhhccCCceEEEEEccCC--CcHHHHhhcCCCCCCCCCCcCChhhhccCCe
Q 028917 4 KIYIVYYSLY---G----HVETMAREVQRGANSVLGVEATLWQVPET--LSSVILQKMKAPPKTNDVPVIRPHQLKEADG 74 (202)
Q Consensus 4 kiliiy~S~~---G----~T~~la~~i~~~~~~~~g~~v~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ 74 (202)
||-++.+|.. - ..+..++.+.+.+++ .+++ ++..... .+.+..+.. ..... .++|+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~--vv~~~~~~~~~~~~~~~~-----------~~~~~-~~~d~ 66 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNE-LPVE--VVDKPEVTGTPDEARKAA-----------EEFNE-ANCDG 66 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhc-CCce--EEecCcccCCHHHHHHHH-----------HHHhh-cCCcE
Confidence 6777777764 2 346677778888876 5654 4444432 111111100 01111 37999
Q ss_pred eEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecC
Q 028917 75 FLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTG 118 (202)
Q Consensus 75 ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g 118 (202)
||+..++|..+ +.++.-+. . .++|+.++++..
T Consensus 67 ii~~~~tf~~~-----~~~~~~~~------~-~~~Pvll~a~~~ 98 (452)
T cd00578 67 LIVWMHTFGPA-----KMWIAGLS------E-LRKPVLLLATQF 98 (452)
T ss_pred EEEcccccccH-----HHHHHHHH------h-cCCCEEEEeCCC
Confidence 99999998654 33333331 2 368888887754
No 378
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.22 E-value=60 Score=24.80 Aligned_cols=48 Identities=25% Similarity=0.108 Sum_probs=34.1
Q ss_pred ChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCC
Q 028917 65 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGF 119 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~ 119 (202)
+.+.+..+|.|++.+|.....-....++++|-... .|-+-.++++.+.
T Consensus 58 l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~-------agVk~~v~ss~~~ 105 (233)
T PF05368_consen 58 LVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA-------AGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH-------HT-SEEEESEESS
T ss_pred HHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc-------cccceEEEEEecc
Confidence 46778999999999998876667777888887742 2333445655544
No 379
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=32.00 E-value=87 Score=25.79 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=30.7
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+.+..+. .|-.+..+..+.+.+.+ .|++++++-..+
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~-~g~~v~~~~~~~ 39 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRD-LGVDTRWEVIKG 39 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHH-cCCCceEEecCC
Confidence 577777665 57789999999999998 899999876644
No 380
>PRK06217 hypothetical protein; Validated
Probab=31.87 E-value=57 Score=24.15 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=18.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhh
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGAN 28 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~ 28 (202)
|| +|+|+=.|..|.|- +++.+++.+.
T Consensus 1 ~~-~I~i~G~~GsGKST-la~~L~~~l~ 26 (183)
T PRK06217 1 MM-RIHITGASGSGTTT-LGAALAERLD 26 (183)
T ss_pred Ce-EEEEECCCCCCHHH-HHHHHHHHcC
Confidence 54 78887667788765 7777777764
No 381
>PRK07206 hypothetical protein; Provisional
Probab=31.85 E-value=63 Score=27.34 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||++++||-++..| ..+++.+++ .|.++-.++-.
T Consensus 1 ~~k~~liv~~~~~~------~~~~~a~~~-~G~~~v~v~~~ 34 (416)
T PRK07206 1 MMKKVVIVDPFSSG------KFLAPAFKK-RGIEPIAVTSS 34 (416)
T ss_pred CCCeEEEEcCCchH------HHHHHHHHH-cCCeEEEEEcC
Confidence 88788888754333 245666676 78776666543
No 382
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.61 E-value=2.7e+02 Score=22.16 Aligned_cols=81 Identities=15% Similarity=0.070 Sum_probs=40.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCC-----CCcCChhhhccCCeeEEe
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTND-----VPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~ad~ii~g 78 (202)
||+|| | .|+ +...++..+.+ .|.+|.+++-..... +.+.......++.+ ........+..+|.||+.
T Consensus 2 ~I~Ii-G--~G~---~G~~~a~~L~~-~g~~V~~~~r~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila 73 (304)
T PRK06522 2 KIAIL-G--AGA---IGGLFGAALAQ-AGHDVTLVARRGAHL-DALNENGLRLEDGEITVPVLAADDPAELGPQDLVILA 73 (304)
T ss_pred EEEEE-C--CCH---HHHHHHHHHHh-CCCeEEEEECChHHH-HHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEe
Confidence 67665 2 343 44556666666 688888877532111 11111111000000 000123335889999999
Q ss_pred ccccCCcchHHHHHHHHhhh
Q 028917 79 FPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 79 sP~y~g~~~~~~k~fld~~~ 98 (202)
+|.|. ++..+..+.
T Consensus 74 ~k~~~------~~~~~~~l~ 87 (304)
T PRK06522 74 VKAYQ------LPAALPSLA 87 (304)
T ss_pred ccccc------HHHHHHHHh
Confidence 99863 455555553
No 383
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=31.54 E-value=1.9e+02 Score=24.02 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=12.6
Q ss_pred hhccCCeeEEecccc
Q 028917 68 QLKEADGFLFGFPSR 82 (202)
Q Consensus 68 ~l~~ad~ii~gsP~y 82 (202)
...+.|++++++|..
T Consensus 65 ~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 65 ILAGADVVFLALPHG 79 (343)
T ss_pred HhcCCCEEEECCCcH
Confidence 456799999999985
No 384
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=31.15 E-value=1.9e+02 Score=25.36 Aligned_cols=38 Identities=5% Similarity=0.088 Sum_probs=24.8
Q ss_pred ceEEEEE--ecCCChHHHHH-HHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVY--YSLYGHVETMA-REVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy--~S~~G~T~~la-~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|+++|+ .|..|...++. +.+...+++ .|++++++.-.
T Consensus 112 kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~ 152 (481)
T PLN02958 112 KRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETK 152 (481)
T ss_pred cEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 4666665 35556666664 467778888 88887766543
No 385
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.01 E-value=1.1e+02 Score=21.45 Aligned_cols=35 Identities=6% Similarity=0.151 Sum_probs=24.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
+.++|.-|..|.|......+++.+++ .|..+-.+.
T Consensus 62 ~~~vi~is~~g~t~~~~~~~~~~~~~-~~~~vi~it 96 (153)
T cd05009 62 GTPVIFLAPEDRLEEKLESLIKEVKA-RGAKVIVIT 96 (153)
T ss_pred CCcEEEEecCChhHHHHHHHHHHHHH-cCCEEEEEe
Confidence 45667778888877777777788887 676555543
No 386
>PF00496 SBP_bac_5: Bacterial extracellular solute-binding proteins, family 5 Middle; InterPro: IPR000914 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into Gram-positive bacteria which are surrounded by a single membrane and therefore have no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families of clusters, which generally correlate with the nature of the solute bound. Family 5 currently includes periplasmic oligopeptide-binding proteins (oppA) of Gram-negative bacteria and homologous lipoproteins in Gram-positive bacteria (oppA, amiA or appA); periplasmic dipeptide-binding proteins of Escherichia coli (dppA) and Bacillus subtilis (dppE); periplasmic murein peptide-binding protein of E. coli (mppA); periplasmic peptide-binding proteins sapA of E. coli, Salmonella typhimurium and Haemophilus influenzae; periplasmic nickel-binding protein (nikA) of E. coli; haem-binding lipoprotein (hbpA or dppA) from H. influenzae; lipoprotein xP55 from Streptomyces lividans; and hypothetical proteins from H. influenzae (HI0213) and Rhizobium sp. (strain NGR234) symbiotic plasmid (y4tO and y4wM).; GO: 0005215 transporter activity, 0006810 transport; PDB: 1B51_A 1B0H_A 1QKA_A 1B9J_A 1B6H_A 1OLA_A 1B3L_C 1JEV_A 1B5H_A 1JET_A ....
Probab=30.98 E-value=1.2e+02 Score=24.91 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=44.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFG 84 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g 84 (202)
+.+++.+.+-....+++.+++.+++ .|+++++..+... . .. .....-.++|..+.+.-....
T Consensus 296 ~~~~~~~~~~~~~~~a~~l~~~l~~-~Gi~v~i~~~~~~--~-~~--------------~~~~~~~~~d~~~~~~~~~~~ 357 (374)
T PF00496_consen 296 LIILYTSDDPIWKAIAEALQEQLKK-IGIKVEIKPVDFN--D-TY--------------DKRLRAGDFDMALSGWSGDYP 357 (374)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHH-TTEEEEEEEESHH--H-HH--------------HHHHHCTSESEEEEEEESSSS
T ss_pred ccccccccccchHHHHHHHHHHHhh-cceeEEEEEeChH--H-HH--------------HHHhhCCCcCEEEEecCCCCC
Confidence 5555666666778999999999999 9999988777320 0 00 012233577877776443444
Q ss_pred cchHHHHHHH
Q 028917 85 VMAAQCKAFF 94 (202)
Q Consensus 85 ~~~~~~k~fl 94 (202)
..+..+..|+
T Consensus 358 ~~~~~~~~~~ 367 (374)
T PF00496_consen 358 DPYSFLYPFF 367 (374)
T ss_dssp STHHHHHHHH
T ss_pred CHHHHHHHHc
Confidence 4444444443
No 387
>PRK08118 topology modulation protein; Reviewed
Probab=30.71 E-value=67 Score=23.56 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=18.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANS 29 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~ 29 (202)
+||+|+=.+..|.| .+|+.+++.+.-
T Consensus 2 ~rI~I~G~~GsGKS-Tlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKS-TLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHH-HHHHHHHHHhCC
Confidence 37877655567877 588888888753
No 388
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.70 E-value=1e+02 Score=25.06 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=27.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
+|.|++-...-....+++.+.+.+++ .|+++.+..
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~ 36 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEE 36 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEec
Confidence 78888766666778889999999988 888776643
No 389
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=30.69 E-value=2.5e+02 Score=21.70 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=24.9
Q ss_pred EEEEEec-CCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 5 IYIVYYS-LYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 5 iliiy~S-~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|.++.-+ .+..-..+.+.+.+.+++ .|.++.+.+.
T Consensus 2 igv~~~~~~~~~~~~~~~~i~~~~~~-~g~~v~~~~~ 37 (282)
T cd06318 2 IGFSQYTLNSPFFAALTEAAKAHAKA-LGYELISTDA 37 (282)
T ss_pred eeEEeccccCHHHHHHHHHHHHHHHH-cCCEEEEEcC
Confidence 5555433 245567899999999999 8988876654
No 390
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=30.57 E-value=1.6e+02 Score=21.13 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEeccc-cCCcchHHHHHHHHhhhhh
Q 028917 23 VQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGFPS-RFGVMAAQCKAFFDATYEL 100 (202)
Q Consensus 23 i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gsP~-y~g~~~~~~k~fld~~~~~ 100 (202)
+.+.+++ .+.++.++|+...... . ...+.+. ...+.+.+||.+++...+ -|+++ ..++++.
T Consensus 23 ~~~~l~~-~~~~v~v~d~~~~~~~----~-----~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti----~~iL~~~--- 85 (147)
T PF04016_consen 23 LVEKLKE-RGAEVRVFDLNPDNIG----E-----EPGDVPDEDAEEILPWADVVIITGSTLVNGTI----DDILELA--- 85 (147)
T ss_dssp CHHHHCC-CCSEEEEEESSGGG------S-----SCT-EEGGGHHHHGGG-SEEEEECHHCCTTTH----HHHHHHT---
T ss_pred HHHHHhc-CCCCEEEEECCCCCCC----C-----CCCcCCHHHHHHHHccCCEEEEEeeeeecCCH----HHHHHhC---
Confidence 3455555 6788999998752100 0 0011111 235678999999887554 46664 4455554
Q ss_pred hhhccCCCCceEEEEecC
Q 028917 101 WASQALAGKPAGIFWSTG 118 (202)
Q Consensus 101 ~~~~~l~gK~~~~~~t~g 118 (202)
. +++.+.+++.+.
T Consensus 86 ----~-~~~~vil~GpS~ 98 (147)
T PF04016_consen 86 ----R-NAREVILYGPSA 98 (147)
T ss_dssp ----T-TSSEEEEESCCG
T ss_pred ----c-cCCeEEEEecCc
Confidence 1 477777776544
No 391
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=30.40 E-value=1.6e+02 Score=24.93 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhc---cCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANS---VLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~---~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
|+.||.+|-+=.-| ..+..+..+-++. ..+.++++..+.- -..+..... +.+|+...+.++++|++++
T Consensus 1 ~~~~I~vipGDGIG--pEV~~aa~~vl~a~~~~~~~~~~~~~~~~--G~~~~~~~G-----~~lp~~tl~~~~~~da~L~ 71 (358)
T PRK00772 1 MTYKIAVLPGDGIG--PEVMAEAVKVLDAVAEKFGFDFEFEEALV--GGAAIDAHG-----VPLPEETLEACRAADAVLL 71 (358)
T ss_pred CceEEEEECCCccc--HHHHHHHHHHHHHHHhhcCCceEEEEecC--cHHHHHHHC-----CCCCHHHHHHHHHCCEEEE
Confidence 66678888654434 2233333333321 0245555544421 111211111 2344446788999999999
Q ss_pred ec
Q 028917 78 GF 79 (202)
Q Consensus 78 gs 79 (202)
|.
T Consensus 72 Ga 73 (358)
T PRK00772 72 GA 73 (358)
T ss_pred Cc
Confidence 84
No 392
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=30.36 E-value=1.2e+02 Score=17.60 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=20.6
Q ss_pred EEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 7 IVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 7 iiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++|++++ +.+.++-+. |++ .|++.+.+++.+
T Consensus 2 ~vy~~~~C~~C~~~~~~----L~~-~~i~y~~~dv~~ 33 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEF----LDE-KGIPYEEVDVDE 33 (60)
T ss_dssp EEEESTTSHHHHHHHHH----HHH-TTBEEEEEEGGG
T ss_pred EEEEcCCCcCHHHHHHH----HHH-cCCeeeEccccc
Confidence 5666653 566644443 355 788999999976
No 393
>PF10195 Phospho_p8: DNA-binding nuclear phosphoprotein p8; InterPro: IPR018792 P8 is a short 80-82 amino acid protein that is conserved from nematodes to humans. It carries at least one protein kinase C domain suggesting a possible role in signal transduction and it is thought to be a phosphoprotein, but the sites of phosphorylation and the kinases involved remain to be determined [].
Probab=30.24 E-value=44 Score=20.33 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=13.3
Q ss_pred ecCCChHHHHHHHHHHH
Q 028917 10 YSLYGHVETMAREVQRG 26 (202)
Q Consensus 10 ~S~~G~T~~la~~i~~~ 26 (202)
.+|.|++++|+..+..+
T Consensus 40 ~~P~Gh~RKiv~kl~N~ 56 (60)
T PF10195_consen 40 PSPGGHERKIVTKLQNT 56 (60)
T ss_pred CCCCchHHHHHHHHHhc
Confidence 36789999999887653
No 394
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.01 E-value=3.5e+02 Score=23.01 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhc---cCCeeEEeccccCCcchHHH
Q 028917 14 GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLK---EADGFLFGFPSRFGVMAAQC 90 (202)
Q Consensus 14 G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~ad~ii~gsP~y~g~~~~~~ 90 (202)
|..++|.+.|.+..+. ... +++-+-.+-+.+.+ -||+. .....+. +...|.+-+|-|.|+...-.
T Consensus 69 Gg~~~L~~~i~~~~~~-~~P--~~i~v~~tC~~~~i--------GdDi~-~v~~~~~~~~~~~vi~v~t~gf~g~~~~G~ 136 (410)
T cd01968 69 GGEKKLYKAILEIIER-YHP--KAVFVYSTCVVALI--------GDDID-AVCKTASEKFGIPVIPVHSPGFVGNKNLGN 136 (410)
T ss_pred ccHHHHHHHHHHHHHh-CCC--CEEEEECCCchhhh--------ccCHH-HHHHHHHHhhCCCEEEEECCCcccChhHHH
Confidence 6678888888888876 332 33333332111111 13433 1222222 56788888999988754444
Q ss_pred HHHHHhhhhhhhhc----cCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 91 KAFFDATYELWASQ----ALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 91 k~fld~~~~~~~~~----~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
...++.+...+... .-..+.+-+++...+ .+. +.++.+.|...|+.+..
T Consensus 137 ~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~-~~d----~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 137 KLACEALLDHVIGTEEPEPLTPYDINLIGEFNV-AGE----LWGVKPLLEKLGIRVLA 189 (410)
T ss_pred HHHHHHHHHHhcCCCCcccCCCCcEEEECCCCC-ccc----HHHHHHHHHHcCCeEEE
Confidence 44444443222111 111345656654433 222 45677788888988763
No 395
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=29.87 E-value=1.5e+02 Score=22.75 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.0
Q ss_pred ChhhhccCCeeEEe
Q 028917 65 RPHQLKEADGFLFG 78 (202)
Q Consensus 65 ~~~~l~~ad~ii~g 78 (202)
..+.+.++|+|+|+
T Consensus 77 ~~~~l~~ad~I~~~ 90 (217)
T cd03145 77 VVARLRDADGIFFT 90 (217)
T ss_pred HHHHHHhCCEEEEe
Confidence 45789999999997
No 396
>PRK05670 anthranilate synthase component II; Provisional
Probab=29.81 E-value=2.4e+02 Score=21.00 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=18.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+||-.- +..|..+++.+ ++ .|++++++...
T Consensus 2 iliid~~-d~f~~~i~~~l----~~-~g~~~~v~~~~ 32 (189)
T PRK05670 2 ILLIDNY-DSFTYNLVQYL----GE-LGAEVVVYRND 32 (189)
T ss_pred EEEEECC-CchHHHHHHHH----HH-CCCcEEEEECC
Confidence 6776522 44566555554 44 57788887764
No 397
>PLN02256 arogenate dehydrogenase
Probab=29.79 E-value=2.9e+02 Score=22.55 Aligned_cols=74 Identities=16% Similarity=0.131 Sum_probs=40.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh--ccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL--KEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ad~ii~gsP 80 (202)
++|.|| | .|+ |...++..+.+ .|.++..++-.+. .......... .. ...+++ .++|.||+++|
T Consensus 37 ~kI~II-G--~G~---mG~slA~~L~~-~G~~V~~~d~~~~--~~~a~~~gv~----~~--~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 37 LKIGIV-G--FGN---FGQFLAKTFVK-QGHTVLATSRSDY--SDIAAELGVS----FF--RDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CEEEEE-e--eCH---HHHHHHHHHHh-CCCEEEEEECccH--HHHHHHcCCe----ee--CCHHHHhhCCCCEEEEecC
Confidence 366665 2 354 56677777777 6777777665431 1111110110 00 112222 36999999999
Q ss_pred ccCCcchHHHHHHHHhh
Q 028917 81 SRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~ 97 (202)
.. .+..+++.+
T Consensus 102 ~~------~~~~vl~~l 112 (304)
T PLN02256 102 IL------STEAVLRSL 112 (304)
T ss_pred HH------HHHHHHHhh
Confidence 74 456666665
No 398
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=29.75 E-value=1.6e+02 Score=19.10 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=28.3
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhhhccCCeeEEeccc
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ad~ii~gsP~ 81 (202)
.++.+.+..++ .|.++.+--=... +.. ....+++.++|.||+..-+
T Consensus 2 AAeaL~~aA~~-~G~~i~VEtqg~~----------------g~~~~lt~~~i~~Ad~VIia~d~ 48 (88)
T PRK10474 2 AAEALESAAKA-KGWEVKVETQGSI----------------GLENELTAEDVASADMVILTKDI 48 (88)
T ss_pred HHHHHHHHHHH-CCCeEEEEecCCc----------------CcCCCCCHHHHHhCCEEEEEecC
Confidence 45677777777 7877664221111 111 0235889999999999654
No 399
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=29.73 E-value=2.1e+02 Score=26.50 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
+|+.-..|..+++.|++ .|++++++++....|
T Consensus 551 ~G~~v~~Al~Aa~~L~~-~GI~~~VId~~~lkP 582 (677)
T PLN02582 551 YGTAVQSCLAAASLLER-HGLSATVADARFCKP 582 (677)
T ss_pred ecHHHHHHHHHHHHHHh-cCCCEEEEEcCcCCC
Confidence 57777788888888888 899999999976433
No 400
>PRK15453 phosphoribulokinase; Provisional
Probab=29.69 E-value=1.4e+02 Score=24.35 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=25.9
Q ss_pred CCce--EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 1 MATK--IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 1 M~~k--iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
|++| |..|.|++ .|.| .+++.+++.++. .++.+.+++..++
T Consensus 1 Ms~k~piI~ItG~SGsGKT-Tva~~l~~if~~-~~~~~~vi~~D~y 44 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTT-TVKRAFEKIFRR-ENINAAVVEGDSF 44 (290)
T ss_pred CCCCCcEEEEECCCCCCHH-HHHHHHHHHHhh-cCCCeEEEecccc
Confidence 6555 44445544 5644 477888888876 6666777776654
No 401
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=29.69 E-value=1.3e+02 Score=21.83 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=22.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+|+.||..|.+=+-..-+-.++.++.. .|.+|.++-.
T Consensus 3 kkl~ii~~sg~~Dk~~~~lilA~~Aaa-~G~eV~iFfT 39 (148)
T PF13686_consen 3 KKLAIIVFSGTLDKAYPALILASGAAA-MGMEVTIFFT 39 (148)
T ss_dssp -EEEEEE---SHHHHHHHHHHHHHHHH-TT-EEEEEE-
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHH-cCCcEEEEEe
Confidence 578888887655444455567777777 8999998874
No 402
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=29.57 E-value=1.4e+02 Score=20.30 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=22.2
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
.+|++++-.|-+=|.... ++ .|++++.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L---~~-~~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALL---ED-KGIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHH---HH-CCCCeEEEeccCC
Confidence 478888765554444443 44 5888999998764
No 403
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=29.50 E-value=1.1e+02 Score=25.91 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 14 GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 14 G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
|.+...+....+.+++ .|..+.++++....|... +.+.+.+..++.|++.
T Consensus 282 Gs~~~~a~eAv~~Lr~-~G~~v~~l~~~~l~Pfp~--------------~~i~~~~~~~k~Vivv 331 (376)
T PRK08659 282 GSVARSARRAVKEARE-EGIKVGLFRLITVWPFPE--------------EAIRELAKKVKAIVVP 331 (376)
T ss_pred CccHHHHHHHHHHHHh-cCCceEEEEeCeecCCCH--------------HHHHHHHhcCCEEEEE
Confidence 4444455556666677 799999999987544210 0134556777776653
No 404
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=29.49 E-value=95 Score=22.48 Aligned_cols=80 Identities=15% Similarity=0.038 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC--cCChhhhccCCeeEEeccccCCcchHHHH
Q 028917 14 GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP--VIRPHQLKEADGFLFGFPSRFGVMAAQCK 91 (202)
Q Consensus 14 G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ad~ii~gsP~y~g~~~~~~k 91 (202)
|-|-.+...+++.|.+ .|.+|..+-=....... ...-.... -|+. +...+.+..+|.||...+..... ...++
T Consensus 5 GatG~vG~~l~~~L~~-~~~~V~~~~R~~~~~~~--~~~~~~~~-~d~~d~~~~~~al~~~d~vi~~~~~~~~~-~~~~~ 79 (183)
T PF13460_consen 5 GATGFVGRALAKQLLR-RGHEVTALVRSPSKAED--SPGVEIIQ-GDLFDPDSVKAALKGADAVIHAAGPPPKD-VDAAK 79 (183)
T ss_dssp TTTSHHHHHHHHHHHH-TTSEEEEEESSGGGHHH--CTTEEEEE-SCTTCHHHHHHHHTTSSEEEECCHSTTTH-HHHHH
T ss_pred CCCChHHHHHHHHHHH-CCCEEEEEecCchhccc--ccccccce-eeehhhhhhhhhhhhcchhhhhhhhhccc-ccccc
Confidence 3344466677777777 67777765433211111 00000000 1111 12356678999999999877665 55567
Q ss_pred HHHHhhh
Q 028917 92 AFFDATY 98 (202)
Q Consensus 92 ~fld~~~ 98 (202)
.+++.+.
T Consensus 80 ~~~~a~~ 86 (183)
T PF13460_consen 80 NIIEAAK 86 (183)
T ss_dssp HHHHHHH
T ss_pred ccccccc
Confidence 7777663
No 405
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=29.37 E-value=1.5e+02 Score=21.67 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=22.7
Q ss_pred CCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 12 LYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 12 ~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
..|.| .||+++.+.|.+ .|..+.++|-.
T Consensus 12 GsGKt-TlA~~L~~~L~~-~g~~~~~LDgD 39 (156)
T PF01583_consen 12 GSGKT-TLARALERRLFA-RGIKVYLLDGD 39 (156)
T ss_dssp TSSHH-HHHHHHHHHHHH-TTS-EEEEEHH
T ss_pred CCCHH-HHHHHHHHHHHH-cCCcEEEecCc
Confidence 36766 799999999999 89999998854
No 406
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.27 E-value=1.3e+02 Score=24.42 Aligned_cols=35 Identities=20% Similarity=-0.077 Sum_probs=27.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
++|.|++-...-....+++.+.+.+++ .|+++.+.
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~ 40 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVE 40 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 368888766666778889999999988 88877654
No 407
>PRK14866 hypothetical protein; Provisional
Probab=29.22 E-value=1.7e+02 Score=25.56 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=18.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHh
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGA 27 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~ 27 (202)
+++||+.+..--+.-+++.+.+-+
T Consensus 2 ~~~iv~S~~DpAS~ni~~~L~~l~ 25 (451)
T PRK14866 2 MIAIVVSRADPASVHIREHLLELL 25 (451)
T ss_pred eEEEEEeCCCchhhhHHHHHHHhc
Confidence 488888777777777888888854
No 408
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=29.17 E-value=2.1e+02 Score=22.09 Aligned_cols=37 Identities=22% Similarity=0.296 Sum_probs=26.8
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||.+|..+. +..-..+.+.+.+.+++ .|.++.+....
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~ 38 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKK-LGVSVDIQAAP 38 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHH-hCCeEEEEccC
Confidence 466666554 44567888999999998 89888776543
No 409
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=29.12 E-value=2e+02 Score=22.56 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHhHHHH
Q 028917 179 TDLELQQAFHQGKYVA 194 (202)
Q Consensus 179 ~e~~~~~a~~~g~~l~ 194 (202)
...+++.|+++++++.
T Consensus 40 h~~Ele~A~~iak~lg 55 (222)
T COG0603 40 HRKELEAAKELAKKLG 55 (222)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 3788999988888763
No 410
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=29.11 E-value=2.3e+02 Score=25.81 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
+|..-..|-.+++.|++ .|++++++++....|
T Consensus 503 ~G~~v~~al~Aa~~L~~-~gi~~~VId~~~lkP 534 (617)
T TIGR00204 503 FGTLVPEALEVAESLNE-KGIEATVVDARFVKP 534 (617)
T ss_pred cCHHHHHHHHHHHHHHh-cCCCEEEEecCcCCc
Confidence 56666677777778887 799999999976433
No 411
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.02 E-value=1.2e+02 Score=24.74 Aligned_cols=35 Identities=20% Similarity=0.060 Sum_probs=26.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEE
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
+++|.|++-... ....+++.+.+.+++ .|+++.+.
T Consensus 10 ~~~i~ii~~~~~-~~~~~~~~i~~~l~~-~g~~~~~~ 44 (287)
T PRK14077 10 IKKIGLVTRPNV-SLDKEILKLQKILSI-YKVEILLE 44 (287)
T ss_pred CCEEEEEeCCcH-HHHHHHHHHHHHHHH-CCCEEEEe
Confidence 446888876544 778889999998988 78877654
No 412
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.01 E-value=1.3e+02 Score=24.70 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 16 VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
+..+..-++.-|.+ .|+.|.+.+-... ...+...+||.||.+.+.
T Consensus 167 s~~mG~PmA~~L~~-~g~tVtv~~~rT~--------------------~l~e~~~~ADIVIsavg~ 211 (296)
T PRK14188 167 SNLVGKPMAQLLLA-ANATVTIAHSRTR--------------------DLPAVCRRADILVAAVGR 211 (296)
T ss_pred CcchHHHHHHHHHh-CCCEEEEECCCCC--------------------CHHHHHhcCCEEEEecCC
Confidence 34455556666656 6878877643221 123456799999998876
No 413
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=28.99 E-value=4.8e+02 Score=25.13 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh---ccCCeeEEeccccCCcch--
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL---KEADGFLFGFPSRFGVMA-- 87 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~ad~ii~gsP~y~g~~~-- 87 (202)
.|..++|.+.|.+..+. .. .+++-+-.+-+.+.+. ||+. .....+ .....|-+-||-|-|+..
T Consensus 94 fGG~~kL~~aI~~~~~~-~~--P~~I~V~tTC~~elIG--------DDi~-~v~~~~~~~~~~pvi~v~tpGF~gs~~~G 161 (917)
T PRK14477 94 FGGEKKLYRAILELAER-YQ--PKAVFVYATCVTALTG--------DDVE-AVCKAAAEKVGIPVIPVNTPGFIGDKNIG 161 (917)
T ss_pred eCcHHHHHHHHHHHHHh-cC--CCEEEEECCchHHHhc--------cCHH-HHHHHHHHhhCCcEEEEECCCccCchhhH
Confidence 36778888888888876 32 3444444332211111 3443 122222 245688888998887654
Q ss_pred --HHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 88 --AQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 88 --~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
..++.+++.+.....+..-..+.+-+++...+ .+ .+.++...|...|..++.
T Consensus 162 ~~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~-~g----d~~elk~lL~~~Gi~v~~ 215 (917)
T PRK14477 162 NRLAGEALLKHVIGTAEPEVTTPYDINLIGEYNI-AG----DLWGMLPLFDRLGIRVLS 215 (917)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCC-cc----hHHHHHHHHHHcCCeEEE
Confidence 44566666653211111122344556654433 12 245677778888998764
No 414
>PRK09982 universal stress protein UspD; Provisional
Probab=28.93 E-value=1.9e+02 Score=20.18 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=25.7
Q ss_pred CceEEEEE-ecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVY-YSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy-~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.+|||+-. +|. ++.++++...+-++. .+.++.++.+-+
T Consensus 3 ~k~ILvavD~S~--~s~~al~~A~~lA~~-~~a~l~llhV~~ 41 (142)
T PRK09982 3 YKHIGVAISGNE--EDALLVNKALELARH-NDAHLTLIHIDD 41 (142)
T ss_pred ceEEEEEecCCc--chHHHHHHHHHHHHH-hCCeEEEEEEcc
Confidence 34577765 333 456777777776666 788899988854
No 415
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=28.80 E-value=83 Score=25.94 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
+|..-..+...++.+.+ .|++++++||....|
T Consensus 208 yg~mv~~al~AAe~l~~-~Gis~EVIDLRTl~P 239 (324)
T COG0022 208 YGAMVHTALEAAEELEK-EGISAEVIDLRTLSP 239 (324)
T ss_pred echHHHHHHHHHHHHhh-cCCCeEEEeccccCc
Confidence 45556666777777887 799999999987543
No 416
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=28.63 E-value=1.6e+02 Score=19.70 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=31.4
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
++.+++.+.+..+-++.++|+.+. -.-+|.+|++|-.-. ..+++..+.+
T Consensus 2 ~~~i~~~l~~kka~dI~vldv~~~-------------------------~~~~dy~VI~Tg~S~----rh~~aia~~v 50 (99)
T TIGR00090 2 LELIVEALDDKKAEDIVVLDVRGK-------------------------SSIADYFVIASGTSS----RHVKAIADNV 50 (99)
T ss_pred HHHHHHHHHHcCCCCEEEEECCCC-------------------------CcccCEEEEEEeCCH----HHHHHHHHHH
Confidence 456667776646678999998752 125588999986543 3455555544
No 417
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=28.54 E-value=3.4e+02 Score=22.38 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=25.1
Q ss_pred ChhhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 65 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
..+..+++|.+|+=+|- .+.-+...|+|++.+
T Consensus 133 D~EAv~~aei~I~ftPf-G~~q~~Iikkii~~l 164 (340)
T TIGR01723 133 DREAVEDADIIITWLPK-GNKQPDIIKKFIDDI 164 (340)
T ss_pred cHHHhcCCCEEEEEcCC-CCCchHHHHHHHhhC
Confidence 35678899999998883 333488899999988
No 418
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=28.38 E-value=1.7e+02 Score=20.22 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=22.9
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
.-||++++-.|-+-|... +++ .|++.+++++.+.
T Consensus 3 itiy~~p~C~t~rka~~~---L~~-~gi~~~~~~y~~~ 36 (117)
T COG1393 3 ITIYGNPNCSTCRKALAW---LEE-HGIEYTFIDYLKT 36 (117)
T ss_pred EEEEeCCCChHHHHHHHH---HHH-cCCCcEEEEeecC
Confidence 456889876555544443 444 7889999988763
No 419
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=28.30 E-value=88 Score=20.87 Aligned_cols=31 Identities=10% Similarity=-0.015 Sum_probs=23.5
Q ss_pred hhccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 68 QLKEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 68 ~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
+.++||.||+-|-+--.+.-..+...+.++.
T Consensus 33 ~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~ 63 (98)
T PF00919_consen 33 DPEEADVIIINTCTVRESAEQKSRNRIRKLK 63 (98)
T ss_pred ccccCCEEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 3479999999999988776666666666654
No 420
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=28.29 E-value=1.8e+02 Score=21.42 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=25.5
Q ss_pred CCceEEEEEe-cCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYY-SLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~-S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|| +|+-|.+ |.+|.|- +.+.+...+++ .|..|-.+.-
T Consensus 1 m~-~Il~ivG~k~SGKTT-Lie~lv~~L~~-~G~rVa~iKH 38 (161)
T COG1763 1 MM-KILGIVGYKNSGKTT-LIEKLVRKLKA-RGYRVATVKH 38 (161)
T ss_pred CC-cEEEEEecCCCChhh-HHHHHHHHHHh-CCcEEEEEEe
Confidence 55 7776665 5578775 66777777887 7877766554
No 421
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.24 E-value=2.4e+02 Score=21.42 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=28.5
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|.||-+. -||...+.+++.+ .|+++.+++ + .+++.++|+||+--+
T Consensus 2 i~iidyg-~gN~~s~~~al~~-----~g~~~~~v~--~-----------------------~~~l~~~D~lIlPG~ 46 (192)
T PRK13142 2 IVIVDYG-LGNISNVKRAIEH-----LGYEVVVSN--T-----------------------SKIIDQAETIILPGV 46 (192)
T ss_pred EEEEEcC-CccHHHHHHHHHH-----cCCCEEEEe--C-----------------------HHHhccCCEEEECCC
Confidence 5555443 5788777776664 466666543 2 345678999988544
No 422
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=28.23 E-value=2.3e+02 Score=20.28 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=18.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||.|+.+. |....=.-...+.+.+ .|.+++++...
T Consensus 1 ~v~il~~~--g~~~~e~~~~~~~l~~-ag~~v~~vs~~ 35 (166)
T TIGR01382 1 KLLVLTTD--EFEDSELLYPLDRLRE-AGHEVDTVSKE 35 (166)
T ss_pred CEEEEecC--CchHHHHHHHHHHHHH-CCCEEEEEecC
Confidence 45555433 3333223344555666 78888887643
No 423
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=28.22 E-value=1e+02 Score=25.81 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=28.4
Q ss_pred eEEEEEe--cC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYY--SL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~--S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+++.. +| .|..++.+..+++.+.+ .|.+|.++...
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~-~G~~V~v~~~~ 40 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIK-RGHKVVVITHA 40 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHH-cCCeeEEEecc
Confidence 5777663 44 47778888888999998 89999988753
No 424
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=28.16 E-value=2e+02 Score=19.67 Aligned_cols=38 Identities=8% Similarity=0.194 Sum_probs=21.2
Q ss_pred ceEEEEEecCCChH---HHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHV---ETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T---~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++|+|+|.+..... -++...+++.++- .| .+-.+|-.+
T Consensus 20 ~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG-~g-T~~~vdCgd 60 (112)
T cd03067 20 NNVLVLYSKSAKSAEALLKLLSDVAQAVKG-QG-TIAWIDCGD 60 (112)
T ss_pred CcEEEEEecchhhHHHHHHHHHHHHHHhcC-ce-eEEEEecCC
Confidence 46999997654333 3444455555543 22 455666655
No 425
>PRK06545 prephenate dehydrogenase; Validated
Probab=28.11 E-value=3.5e+02 Score=22.51 Aligned_cols=70 Identities=9% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
|...++..+.+ .|.++.+++.... .........+... ++......+.+.++|.||++.|.. .+..++..+
T Consensus 11 iG~siA~~L~~-~G~~v~i~~~~~~-~~~~~~a~~~~~~-~~~~~~~~~~~~~aDlVilavP~~------~~~~vl~~l 80 (359)
T PRK06545 11 IGGSLALAIKA-AGPDVFIIGYDPS-AAQLARALGFGVI-DELAADLQRAAAEADLIVLAVPVD------ATAALLAEL 80 (359)
T ss_pred HHHHHHHHHHh-cCCCeEEEEeCCC-HHHHHHHhcCCCC-cccccCHHHHhcCCCEEEEeCCHH------HHHHHHHHH
Confidence 66677888887 7888888876542 1111111111111 111101123468999999999985 456666665
No 426
>PRK14098 glycogen synthase; Provisional
Probab=27.79 E-value=1.3e+02 Score=26.39 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=28.3
Q ss_pred ceEEEEEe-----cCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 3 TKIYIVYY-----SLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 3 ~kiliiy~-----S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
|||+.|.. +.+|.-.-++..+.+++.+ .|++|+++-
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~-~g~~v~v~~ 46 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEE-EGFEARIMM 46 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHH-CCCeEEEEc
Confidence 48887763 3478888888899999998 899988754
No 427
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=27.79 E-value=2.3e+02 Score=23.97 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=37.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc--cCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe---
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV--PETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG--- 78 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g--- 78 (202)
||.++.+ +|--..+.++..+-++. .++.+++... ... ...+|+...+.++++|++++|
T Consensus 32 ~I~vipG--DGIGpEV~~~a~~vl~a-~~~~i~~~~~~~G~~--------------~~~lp~~~l~~~~~~da~L~Gavg 94 (360)
T PLN00123 32 AVTLIPG--DGIGPLVTGAVEQVMEA-MHAPVYFERYEVHGD--------------MKKVPEEVLESIRRNKVCLKGGLA 94 (360)
T ss_pred EEEEECC--CCccHHHHHHHHHHHHh-CCCceEEEEEccCCC--------------CccCCHHHHHHHHHCCEEEEcccc
Confidence 5666653 44334555555666655 4554444433 221 023444467889999999999
Q ss_pred ccccCC
Q 028917 79 FPSRFG 84 (202)
Q Consensus 79 sP~y~g 84 (202)
+|.|.+
T Consensus 95 ~p~~~~ 100 (360)
T PLN00123 95 TPVGGG 100 (360)
T ss_pred CCCCcC
Confidence 676554
No 428
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.67 E-value=3.9e+02 Score=22.85 Aligned_cols=70 Identities=13% Similarity=0.016 Sum_probs=38.6
Q ss_pred cCCeeEEeccccCCcchHHHHHHHHhhhhhhhhcc--CCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 71 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQA--LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~--l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
....+.+-+|-|.|+...-....+..+...+.... -+.+.+-+++.+... .+ .+.++.+.|...|+.+..
T Consensus 116 ~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~-~~---d~~el~~lL~~~Gl~v~~ 187 (428)
T cd01965 116 DFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLT-PG---DVREIKRILEAFGLEPII 187 (428)
T ss_pred CCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCC-cc---CHHHHHHHHHHcCCCEEE
Confidence 46677777999988765444445544433222111 223345455422211 11 256777788888988774
No 429
>cd08500 PBP2_NikA_DppA_OppA_like_4 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=27.61 E-value=1.2e+02 Score=26.41 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=27.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+-|++.+.......+++.+++.+++ .|+++++..+.
T Consensus 346 l~i~~~~~~~~~~~~a~~i~~~l~~-~Gi~v~~~~~~ 381 (499)
T cd08500 346 FTLITNAGNSIREDIAELIKDDWRK-IGIKVNLQPID 381 (499)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHH-hCCceEEEecc
Confidence 4455544444678999999999999 89998876654
No 430
>cd08489 PBP2_NikA The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel transport system, which functions in the import of nickel and in the control of chemotactic response away from nickel. The ATP-binding cassette (ABC) type nickel transport system is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, the initial nickel receptor. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides,
Probab=27.56 E-value=1.3e+02 Score=25.93 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.++|.+.+...+.+++.|++.+++ .|++|++..+.
T Consensus 336 ~~l~~~~~~~~~~~~a~~i~~~l~~-~Gi~v~~~~~~ 371 (488)
T cd08489 336 LELVYQTDNALQKSIAEYLQSELKK-IGIDLNIIGEE 371 (488)
T ss_pred EEEEecCCCchHHHHHHHHHHHHHH-cCcEEEEeecc
Confidence 4444544344467899999999999 89998876654
No 431
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=27.42 E-value=1.2e+02 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=27.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+++.....|+..-+. .+++.|.+ .|++|.++.-.
T Consensus 2 rIl~~~~p~~GHv~P~l-~la~~L~~-rGh~V~~~t~~ 37 (401)
T cd03784 2 RVLITTIGSRGDVQPLV-ALAWALRA-AGHEVRVATPP 37 (401)
T ss_pred eEEEEeCCCcchHHHHH-HHHHHHHH-CCCeEEEeeCH
Confidence 88888776789988777 56666666 79999887654
No 432
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=27.42 E-value=1.7e+02 Score=19.87 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=22.0
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
.||++++-.|-+=|. +-+++ .|++++.+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~---~~L~~-~~i~~~~~di~~~ 34 (112)
T cd03034 2 TIYHNPRCSKSRNAL---ALLEE-AGIEPEIVEYLKT 34 (112)
T ss_pred EEEECCCCHHHHHHH---HHHHH-CCCCeEEEecccC
Confidence 578888655544443 44455 6888999998764
No 433
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=27.40 E-value=83 Score=21.50 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=28.2
Q ss_pred cCCCCceEEEEecCCCCCC--hHHHHHHHHHHHHHcCcEEecCCC
Q 028917 105 ALAGKPAGIFWSTGFHGGG--QELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 105 ~l~gK~~~~~~t~g~~~g~--~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
.++||++.++-++.. .|- +-..|..+.+.+...|+.|++.+.
T Consensus 18 ~y~Gkv~LIVNvAs~-Cg~t~qy~~L~~L~~ky~~~gl~ILaFPc 61 (108)
T PF00255_consen 18 KYKGKVLLIVNVASK-CGYTKQYKQLNELYEKYKDKGLEILAFPC 61 (108)
T ss_dssp GGTTSEEEEEEEESS-STTHHHHHHHHHHHHHHGGGTEEEEEEEB
T ss_pred HcCCCEEEEEecccc-cCCccccHHHHHHHHHHhcCCeEEEeeeh
Confidence 678999877766543 222 224577777788888999886443
No 434
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=27.39 E-value=2e+02 Score=23.96 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=37.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+ ||.+|-+ .|--..+..+..+-++. .+.++++.... .-........ +.+|+...+.++++|++++|.=
T Consensus 1 m~-~I~vipG--DGIGpEv~~~~~~vl~~-~~~~~~~~~~~--~G~~~~~~~G-----~~lp~~~l~~~~~~da~l~G~v 69 (330)
T PRK14025 1 MH-KICVIEG--DGIGKEVVPAALHVLEA-TGLPFEFVYAE--AGDEVFEKTG-----KALPEETIEAAKEADAVLFGAA 69 (330)
T ss_pred Ce-EEEEECC--CcccHHHHHHHHHHHHh-cCCcEEEEEEc--CCHHHHHHhC-----CCCCHHHHHHHHHCCEEEEccC
Confidence 44 8888854 44334455555555554 45555544432 1111222111 2334346788999999999763
No 435
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=27.30 E-value=1.1e+02 Score=24.52 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=29.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
.|++|+.+-.+..-..+ +.+++. .|.+++.+.+.+.. .....+.++|+|+|.--
T Consensus 2 pkV~Vl~~pGtNce~e~----~~A~~~-aG~~~~~v~~~dl~-------------------~~~~~l~~~~~lvipGG 55 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERET----AAAFEN-AGFEPEIVHINDLL-------------------SGESDLDDFDGLVIPGG 55 (259)
T ss_dssp -EEEEEE-TTEEEHHHH----HHHHHC-TT-EEEEEECCHHH-------------------TTS--GCC-SEEEE-EE
T ss_pred CEEEEEECCCCCCHHHH----HHHHHH-cCCCceEEEEEecc-------------------cccCchhhCcEEEECCc
Confidence 47777765544333333 444555 78889888876521 12347889999988643
No 436
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.29 E-value=3.1e+02 Score=21.52 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=24.9
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEE
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
||.+|..+. +.....+.+.+.+.+++ .|.++.++
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~ 35 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAK-LGIEVVAT 35 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHH-cCCEEEEe
Confidence 577777554 45667899999999998 88777543
No 437
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=27.27 E-value=1.7e+02 Score=25.32 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=20.9
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
.+.-+|++..|.++|.+-. ++.+.+.+.
T Consensus 196 ~~~a~v~vq~Pn~~G~~ed-~~~i~~~~h 223 (429)
T PF02347_consen 196 DDTAAVMVQNPNTFGVFED-IKEIADIAH 223 (429)
T ss_dssp TTEEEEEEESS-TTSB--T-HHHHHHHHH
T ss_pred cCeEEEEeecCCCCceEee-HHHHHHHHH
Confidence 4667899999999999888 888888773
No 438
>PF01750 HycI: Hydrogenase maturation protease; InterPro: IPR000671 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. Metalloproteases are the most diverse of the four main types of protease, with more than 30 families identified to date []. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as abXHEbbHbc, where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesized as a precursor devoid of the metalloenzyme active site. This precursor undergoes a complex post-translational maturation process that requires a number of accessory proteins [, , ]. At one step of this process, after nickel incorporation, each hydrogenase isoenzyme is processed by proteolytic cleavage at the C-terminal end by the corresponding hydrogenase maturation endopeptidase []. For example, Escherichia coli HycI is involved in processing of pre-HycE (the large subunit of hydrogenase 3) [, ]; HybD is involved in processing of pre-HybC (the large subunit of hydrogenase 2) []; and HyaD is assumed to be involved in processing of the large subunit of hydrogenase 1. This group represents metallopeptidases of the MEROPS peptidase family A31 (HybD endopeptidase family, clan AE). The cleavage site is after a His or an Arg, liberating a short peptide [, ]. This cleavage occurs only in the presence of nickel, and the endopeptidase probably uses the metal in the large subunit of [NiFe]-hydrogenases as a recognition motif []. There is no direct evidence for the active site or substrate-binding site, but there are predictions based on an available structure []. Nomenclature note: the following names are used in different organisms for members of this group: HycI, HybD, HyaD, HoxM, HoxW, HupD, HynC, HupM, VhoD, VhtD []. Gene/protein names are sometimes used interchangeably to designate various "hydrogenase cluster" proteins unrelated to each other in various organisms. For example, the following names are used for members of this group, but also for unrelated proteins: HupD is used in Azotobacter chroococcum and Anabaena species to designate an unrelated hydrogenase maturation factor; HydD is used to designate hydrogenase structural genes in Thermococcus litoralis, Pyrococcus abyssi, and other species.; GO: 0008047 enzyme activator activity, 0008233 peptidase activity; PDB: 1CFZ_E 2E85_B 2I8L_A 2KML_A.
Probab=27.10 E-value=65 Score=22.41 Aligned_cols=53 Identities=8% Similarity=-0.071 Sum_probs=32.1
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHH
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCK 91 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k 91 (202)
+++.+++.... .+ .+++++.... .+ .....+.++|.+|+.=-+..+.-|+.+.
T Consensus 3 v~~~L~~~~~~-~~-~v~vid~gt~----------------g~--~ll~~l~~~d~vIiVDAv~~~~~pG~i~ 55 (130)
T PF01750_consen 3 VAERLKERYSP-PD-NVEVIDGGTD----------------GL--DLLDLLEGYDRVIIVDAVDGGGEPGTIY 55 (130)
T ss_dssp HHHHHHHCEE---T-TEEEEEETTT----------------CG--GGHHHHSS-SEEEEEEE--SSS-TT-EE
T ss_pred HHHHHHhhCCC-CC-CEEEEECCCC----------------HH--HHHHHHhCCCEEEEEEcCCCCCCCcEEE
Confidence 55666665443 22 4888888652 11 2577889999999999998888888764
No 439
>PF10957 DUF2758: Protein of unknown function (DUF2758); InterPro: IPR020296 Cse60 is expressed during sporulation in Bacillus subtilis. Transcription commences around 2h after the start of sporulation and had an absolute requirement for the transcription factor sigmaE. Maximal expression of cse60 further depended on the DNA-binding protein SpoIIID. Cse60 is an acidic product of only 60 residues, whose function is not known [].
Probab=27.01 E-value=1.1e+02 Score=18.52 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=21.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+ ||-++..+-.-.-+.-.+.+.+.+.+ .+++|+.
T Consensus 1 Mi-kVKvFd~~he~dLe~~vN~fL~~~~~-----~~viDIK 35 (60)
T PF10957_consen 1 MI-KVKVFDEEHEKDLEDQVNDFLAKLDD-----DQVIDIK 35 (60)
T ss_pred Cc-EEEEEehhhHHHHHHHHHHHHHhCCC-----CcEEEEE
Confidence 55 89988755444455555666666654 3566654
No 440
>PRK08507 prephenate dehydrogenase; Validated
Probab=26.89 E-value=2.2e+02 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=16.7
Q ss_pred hhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 68 QLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 68 ~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
++.++|.||++.|.. .+..++..+
T Consensus 55 ~~~~aD~Vilavp~~------~~~~~~~~l 78 (275)
T PRK08507 55 ELKKCDVIFLAIPVD------AIIEILPKL 78 (275)
T ss_pred HHhcCCEEEEeCcHH------HHHHHHHHH
Confidence 355699999999974 345555554
No 441
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=26.80 E-value=2e+02 Score=20.10 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=23.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
.+.+|+.++=.|-+=|.. -|++ .|++++++|+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~---~L~~-~gi~~~~~d~~~~ 36 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKA---ALKA-SGHDVEVQDILKE 36 (126)
T ss_pred eEEEEeCCCCHHHHHHHH---HHHH-CCCCcEEEeccCC
Confidence 356898887555444443 3444 6899999998763
No 442
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=26.72 E-value=81 Score=21.76 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=24.1
Q ss_pred EEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 8 VYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 8 iy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|.+.+-....+.+.+..+++| +|+..+++...+
T Consensus 7 i~~~~~~~~~~~lrev~aGIEE-EGip~~~~~~~~ 40 (112)
T PF02288_consen 7 IYVSKTIEGSDVLREVLAGIEE-EGIPYRVVRVSD 40 (112)
T ss_dssp CCEECTTTCHHHHHHHHHHHHC-TT-EEEEEEECS
T ss_pred EEecCCCcchhHHHHHHhHhcc-cCCCeEEEeecC
Confidence 4555543337799999999999 999888866544
No 443
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=26.65 E-value=3.1e+02 Score=21.33 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHhh
Q 028917 180 DLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 180 e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
..|.+.|...+..|++.+..|.
T Consensus 66 ~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 66 FYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 3466677888888888887764
No 444
>PRK08116 hypothetical protein; Validated
Probab=26.55 E-value=1e+02 Score=24.64 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.4
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
-+++||++ +|-|. ||.+|+..+.+ .|..+-+++..+
T Consensus 116 gl~l~G~~GtGKTh-La~aia~~l~~-~~~~v~~~~~~~ 152 (268)
T PRK08116 116 GLLLWGSVGTGKTY-LAACIANELIE-KGVPVIFVNFPQ 152 (268)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHHH-cCCeEEEEEHHH
Confidence 47788876 78877 66678888876 677777777654
No 445
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=26.51 E-value=1.3e+02 Score=24.67 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=29.8
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccC--CceEEEEEccC
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVL--GVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~--g~~v~~~~l~~ 42 (202)
|||+++..+. .|-.++.+..+++.+.+ . |+++.++....
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~-~~~g~~v~v~~~~~ 43 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEE-SKINCEMFFFCRND 43 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhh-cCcceeEEEEecCC
Confidence 3899887653 48889999999999988 7 67777666543
No 446
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=26.45 E-value=72 Score=24.48 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 17 ETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 17 ~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
+.=|+.+.+.++. .+++++....++. . ..+| ...+.+..||+||+.
T Consensus 31 ~~GAd~Ll~~Lr~-g~~dv~yMpAH~~------q--------~~FP-qtme~L~~YDaivlS 76 (254)
T COG5426 31 HEGADPLLKALRG-GEYDVTYMPAHDA------Q--------EKFP-QTMEGLDAYDAIVLS 76 (254)
T ss_pred ccCchHHHHHHhC-CCcceEEechHHH------H--------Hhcc-hhhhhhcccceEEEe
Confidence 3457788888887 6777776555441 0 1233 256778999999875
No 447
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=26.44 E-value=3.6e+02 Score=22.00 Aligned_cols=105 Identities=10% Similarity=-0.007 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHHhhccCCceEEEEEccCC--CcHHHHhhcCCCCCCCCCCcCChhhhcc---CCeeEEeccccCCcchH
Q 028917 14 GHVETMAREVQRGANSVLGVEATLWQVPET--LSSVILQKMKAPPKTNDVPVIRPHQLKE---ADGFLFGFPSRFGVMAA 88 (202)
Q Consensus 14 G~T~~la~~i~~~~~~~~g~~v~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~---ad~ii~gsP~y~g~~~~ 88 (202)
|-|.++...+.+.+.+ .|.. .++-++.. ... +....|. ....++.+ -|..|+..|- .
T Consensus 15 ~~~~~~g~~~l~~l~~-~g~~-~v~pVnp~~~~~~--v~G~~~y--------~sv~dlp~~~~~DlAvi~vp~------~ 76 (291)
T PRK05678 15 GITGKQGTFHTEQMLA-YGTN-IVGGVTPGKGGTT--VLGLPVF--------NTVAEAVEATGANASVIYVPP------P 76 (291)
T ss_pred CCCchHHHHHHHHHHH-CCCC-EEEEECCCCCCCe--EeCeecc--------CCHHHHhhccCCCEEEEEcCH------H
Confidence 5555566677777766 5655 55544431 110 0000111 13445544 5999999993 4
Q ss_pred HHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 89 QCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 89 ~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
.+...++.+. . +|-+.+++.++|.. .+. -..+......+|+.++|+..
T Consensus 77 ~v~~~l~e~~------~-~gvk~avI~s~Gf~---~~~-~~~l~~~a~~~girvlGPNc 124 (291)
T PRK05678 77 FAADAILEAI------D-AGIDLIVCITEGIP---VLD-MLEVKAYLERKKTRLIGPNC 124 (291)
T ss_pred HHHHHHHHHH------H-CCCCEEEEECCCCC---HHH-HHHHHHHHHHcCCEEECCCC
Confidence 4555555553 1 56667777776642 111 23677778889999998643
No 448
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=26.42 E-value=3.1e+02 Score=23.42 Aligned_cols=73 Identities=12% Similarity=0.051 Sum_probs=46.2
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhhhhh------------h------hhccC-CCC-ceEEEEecCCCCC--ChHHH
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDATYEL------------W------ASQAL-AGK-PAGIFWSTGFHGG--GQELT 127 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~------------~------~~~~l-~gK-~~~~~~t~g~~~g--~~~~~ 127 (202)
+.-|+|++-||+|. ++-+++....+. + ....+ .++ +..++++--.+.| +...-
T Consensus 105 ~~gd~Vvi~tPvY~-----PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~ee 179 (388)
T COG1168 105 KPGDGVVIQTPVYP-----PFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEE 179 (388)
T ss_pred cCCCeeEecCCCch-----HHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHH
Confidence 67899999999993 455555544321 0 01122 233 5666666555544 23456
Q ss_pred HHHHHHHHHHcCcEEecCCC
Q 028917 128 ALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 128 l~~~~~~l~~~g~~vv~~~~ 147 (202)
|..+.+....+|..||....
T Consensus 180 L~~i~elc~kh~v~VISDEI 199 (388)
T COG1168 180 LRKIAELCLRHGVRVISDEI 199 (388)
T ss_pred HHHHHHHHHHcCCEEEeecc
Confidence 88888899999999996433
No 449
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=26.34 E-value=4.1e+02 Score=22.70 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=18.4
Q ss_pred hccCCeeEEeccccC---Ccc-hHHHHHHHHhhh
Q 028917 69 LKEADGFLFGFPSRF---GVM-AAQCKAFFDATY 98 (202)
Q Consensus 69 l~~ad~ii~gsP~y~---g~~-~~~~k~fld~~~ 98 (202)
+.++|.||+..|+-. ++. -..+...++.+.
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~ 106 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIA 106 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHH
Confidence 458999999998842 211 134555555553
No 450
>PRK13768 GTPase; Provisional
Probab=26.32 E-value=1.8e+02 Score=22.92 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=25.4
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|| ++.+|.+.+ .|.|- ++..++..+.. .|..|-++++..
T Consensus 1 ~~-~~i~v~G~~G~GKTt-~~~~~~~~l~~-~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MM-YIVFFLGTAGSGKTT-LTKALSDWLEE-QGYDVAIVNLDP 40 (253)
T ss_pred Cc-EEEEEECCCCccHHH-HHHHHHHHHHh-cCCceEEEECCC
Confidence 55 566666654 57665 44556666666 688888888754
No 451
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=26.12 E-value=2.6e+02 Score=20.36 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=21.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATL 37 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~ 37 (202)
+||.||.+|.+- ..+++.+.+.+++ .|+.+++
T Consensus 1 p~V~Ii~gs~SD--~~~~~~a~~~L~~-~gi~~~~ 32 (150)
T PF00731_consen 1 PKVAIIMGSTSD--LPIAEEAAKTLEE-FGIPYEV 32 (150)
T ss_dssp -EEEEEESSGGG--HHHHHHHHHHHHH-TT-EEEE
T ss_pred CeEEEEeCCHHH--HHHHHHHHHHHHH-cCCCEEE
Confidence 479999988532 3466777777777 7776654
No 452
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.97 E-value=2.5e+02 Score=20.01 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=45.0
Q ss_pred EEecCCChHHHHH-HHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcc
Q 028917 8 VYYSLYGHVETMA-REVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVM 86 (202)
Q Consensus 8 iy~S~~G~T~~la-~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~ 86 (202)
+.++..|...-+. +.++..+++ .|. +++++.-.-|.+ ...+...+.|.=+++-....+.-
T Consensus 5 vigtv~~D~HdiGk~iv~~~l~~-~Gf--eVi~LG~~v~~e----------------~~v~aa~~~~adiVglS~l~~~~ 65 (134)
T TIGR01501 5 VLGVIGSDCHAVGNKILDHAFTN-AGF--NVVNLGVLSPQE----------------EFIKAAIETKADAILVSSLYGHG 65 (134)
T ss_pred EEEEecCChhhHhHHHHHHHHHH-CCC--EEEECCCCCCHH----------------HHHHHHHHcCCCEEEEecccccC
Confidence 3355533332222 445556666 785 566776532221 23455566566566656666777
Q ss_pred hHHHHHHHHhhhhhhhhccCCCCc
Q 028917 87 AAQCKAFFDATYELWASQALAGKP 110 (202)
Q Consensus 87 ~~~~k~fld~~~~~~~~~~l~gK~ 110 (202)
-..++.+++.+.. ..+++++
T Consensus 66 ~~~~~~~~~~l~~----~gl~~~~ 85 (134)
T TIGR01501 66 EIDCKGLRQKCDE----AGLEGIL 85 (134)
T ss_pred HHHHHHHHHHHHH----CCCCCCE
Confidence 7778999998853 3455543
No 453
>PLN02335 anthranilate synthase
Probab=25.97 E-value=2.8e+02 Score=21.43 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=19.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|+||- -..+.|..+++.+. + .|+++++++..
T Consensus 20 ~ilviD-~~dsft~~i~~~L~----~-~g~~~~v~~~~ 51 (222)
T PLN02335 20 PIIVID-NYDSFTYNLCQYMG----E-LGCHFEVYRND 51 (222)
T ss_pred cEEEEE-CCCCHHHHHHHHHH----H-CCCcEEEEECC
Confidence 566663 23466776666654 4 47788887653
No 454
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=25.91 E-value=1.1e+02 Score=22.28 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=24.4
Q ss_pred ccCCeeEEecc-ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 70 KEADGFLFGFP-SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 70 ~~ad~ii~gsP-~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
.++|.|++... .+.......++.|+.+.. -++++++.+++
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~-------~~~~~i~aic~ 99 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQAL-------KQGKPVAAICG 99 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHH-------HcCCEEEEECh
Confidence 67898776643 333334466788887763 25676666554
No 455
>cd08512 PBP2_NikA_DppA_OppA_like_7 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most si
Probab=25.84 E-value=1.4e+02 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=26.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+.+.+.+.......+++.|++.+++ .|++|++..+
T Consensus 336 l~l~~~~~~~~~~~~a~~i~~~l~~-~Gi~v~~~~~ 370 (476)
T cd08512 336 LTLSYNSGNEPREDIAQLLQASLAQ-IGIKVEIEPV 370 (476)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHH-hCCeEEEEEc
Confidence 4455444334678899999999999 8999887655
No 456
>PRK10853 putative reductase; Provisional
Probab=25.66 E-value=1.9e+02 Score=19.95 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=22.7
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+.||+.++-.|-+=|..+. ++ .|++++++|+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L---~~-~~i~~~~~d~~k~ 35 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWL---EA-QGIDYRFHDYRVD 35 (118)
T ss_pred EEEEcCCCCHHHHHHHHHH---HH-cCCCcEEeehccC
Confidence 4589888755544444433 34 6889999998763
No 457
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=25.66 E-value=2.6e+02 Score=23.11 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=19.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+.||.|+=.| |. +..++.+-|.++. ++++..+.
T Consensus 1 ~~~~VaIvGAt--Gy---~G~eLlrlL~~hp--~~~l~~~~ 34 (313)
T PRK11863 1 MKPKVFIDGEA--GT---TGLQIRERLAGRS--DIELLSIP 34 (313)
T ss_pred CCcEEEEECCC--CH---HHHHHHHHHhcCC--CeEEEEEe
Confidence 77788887544 33 3445556665522 45665553
No 458
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.63 E-value=3.1e+02 Score=21.38 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=26.5
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+|.+|..+. +.....+.+.+.+.+++ .|..+.+.+.
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~-~gy~~~~~~~ 38 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKA-IGWNLRILDG 38 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHH-cCcEEEEECC
Confidence 577776554 44667899999999998 8887766554
No 459
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=25.62 E-value=1.3e+02 Score=25.59 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=24.1
Q ss_pred ceEEEEEecCCC--hHHHHHHHHHHHhhcc-CCceEEEEEccC
Q 028917 3 TKIYIVYYSLYG--HVETMAREVQRGANSV-LGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G--~T~~la~~i~~~~~~~-~g~~v~~~~l~~ 42 (202)
|||+|.-.|-.| ....+++++++++++. .++++..+.+.|
T Consensus 1 MkiliApDsFKgslsa~ea~~ai~~g~~~~~p~~~~~~~PlaD 43 (377)
T PF02595_consen 1 MKILIAPDSFKGSLSAAEAAEAIAEGIRRVFPDAEVVLIPLAD 43 (377)
T ss_dssp -EEEE----BTTTB-HHHHHHHHHHHHHCCSTTSEEEE----S
T ss_pred CeEEEEccCCCCCcCHHHHHHHHHHHHHHhccCcEEEEEecCC
Confidence 389999888655 5788999999999873 356777777776
No 460
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=25.50 E-value=2.4e+02 Score=19.95 Aligned_cols=83 Identities=11% Similarity=-0.057 Sum_probs=39.0
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh--ccCCeeEEeccc--c-CCcchHHHHHHH
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL--KEADGFLFGFPS--R-FGVMAAQCKAFF 94 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ad~ii~gsP~--y-~g~~~~~~k~fl 94 (202)
+-.+.+.++. .|.+++++......... . .+... -.++...++. .++|.||+.... . ...-.+.+..|+
T Consensus 14 ~~~~~~~~~~-a~~~v~~vs~~~~~~~~-~---~~g~~--v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l 86 (163)
T cd03135 14 AVTPVDVLRR-AGIEVTTASLEKKLAVG-S---SHGIK--VKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLL 86 (163)
T ss_pred HHHHHHHHHH-CCCEEEEEEcCCCceEe-c---cCCCE--EEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHH
Confidence 4455666666 67788877654311000 0 00000 0011123333 689999886422 1 111234566666
Q ss_pred HhhhhhhhhccCCCCceEEEEe
Q 028917 95 DATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 95 d~~~~~~~~~~l~gK~~~~~~t 116 (202)
.+.. -++|+++.+++
T Consensus 87 ~~~~-------~~~~~i~~ic~ 101 (163)
T cd03135 87 KEFN-------AKGKLIAAICA 101 (163)
T ss_pred HHHH-------HcCCEEEEEch
Confidence 6552 25676665554
No 461
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=25.49 E-value=3.4e+02 Score=21.42 Aligned_cols=66 Identities=15% Similarity=0.042 Sum_probs=35.8
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCC-CCh----HHHHHHHHHHHHHcCcEEec
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG-GGQ----ELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~-g~~----~~~l~~~~~~l~~~g~~vv~ 144 (202)
.++|.+|++.|.--.+ ..-..-||.. ..+|-++.++....... .+. ......+...|..+|+.+-+
T Consensus 196 ~~~d~Lvi~~P~~~ls--~~e~~~l~~y-------l~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~~~~ 266 (271)
T PF09822_consen 196 DDADVLVIAGPKTDLS--EEELYALDQY-------LMNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIRINP 266 (271)
T ss_pred CCCCEEEEECCCCCCC--HHHHHHHHHH-------HHcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCEeCC
Confidence 7999999999987443 2334444443 12555565655443211 000 00123455677888887643
No 462
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.15 E-value=1.3e+02 Score=20.31 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=21.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATL 37 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~ 37 (202)
+-++|..|..|+|..+.+.+ +.+++ .|+.+-.
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~-~~a~~-~g~~iv~ 92 (139)
T cd05013 61 GDVVIAISFSGETKETVEAA-EIAKE-RGAKVIA 92 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHH-HHHHH-cCCeEEE
Confidence 45677789999998776665 44666 6765443
No 463
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=25.03 E-value=1.2e+02 Score=20.87 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 16 VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
...+|+.|++.+.. .-.++++....|- +......+.+...|.+|+.+-.
T Consensus 9 ~~~La~~ia~~L~~-~~~~~~~~~F~dG----------------E~~v~i~~~v~g~dv~iiqs~~ 57 (116)
T PF13793_consen 9 SQDLAERIAEALGI-PLGKVETKRFPDG----------------ETYVRIPESVRGKDVFIIQSTS 57 (116)
T ss_dssp GHHHHHHHHHHTTS--EE-EEEEE-TTS-----------------EEEEESS--TTSEEEEE---S
T ss_pred CHHHHHHHHHHhCC-ceeeeEEEEcCCC----------------CEEEEecccccCCceEEEEecC
Confidence 45688899998865 3234444444431 0000134556677777776544
No 464
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=24.84 E-value=2.2e+02 Score=19.42 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=22.2
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
.||+.++-.|-+-|. +-|++ .|++++++++.+.
T Consensus 3 ~iy~~p~C~~crkA~---~~L~~-~gi~~~~~d~~~~ 35 (113)
T cd03033 3 IFYEKPGCANNARQK---ALLEA-AGHEVEVRDLLTE 35 (113)
T ss_pred EEEECCCCHHHHHHH---HHHHH-cCCCcEEeehhcC
Confidence 578888755544443 34455 6889999998763
No 465
>cd08516 PBP2_NikA_DppA_OppA_like_11 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=24.70 E-value=1.6e+02 Score=25.03 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=26.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
++-+++.+.......+++.+++.+++ .|++|++..+
T Consensus 319 ~l~l~~~~~~~~~~~~a~~i~~~l~~-~Gi~v~~~~~ 354 (457)
T cd08516 319 DFTILVTSQYGMHVDTAQVIQAQLAA-IGINVEIELV 354 (457)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHH-cCceEEEEEe
Confidence 34555544444567899999999999 8999887544
No 466
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=24.64 E-value=2.3e+02 Score=19.18 Aligned_cols=33 Identities=9% Similarity=-0.078 Sum_probs=21.0
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+.+|++++-.+-+-|..+ +++ .|++++.+++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~---L~~-~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQW---LEE-HQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHH---HHH-CCCceEEEecCC
Confidence 357888864443334333 344 688999999875
No 467
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=24.52 E-value=2.4e+02 Score=21.93 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCcEEecC
Q 028917 125 ELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 125 ~~~l~~~~~~l~~~g~~vv~~ 145 (202)
+..+..+...++..|+.+++.
T Consensus 52 d~lL~av~~~le~~G~~vv~~ 72 (214)
T PF06230_consen 52 DALLRAVIDELEKEGFKVVGA 72 (214)
T ss_pred HHHHHHHHHHHHHCCCEEEcH
Confidence 456888899999999999974
No 468
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=24.42 E-value=1e+02 Score=26.43 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=38.5
Q ss_pred ChhhhccCCeeEEeccccCC---------cchHHHHHHHHhhhhhhhhccCCCCceEEEEecCC
Q 028917 65 RPHQLKEADGFLFGFPSRFG---------VMAAQCKAFFDATYELWASQALAGKPAGIFWSTGF 119 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g---------~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~ 119 (202)
..+++.++.-|-=-.|-|.- .+|...++|++++. .+-|.|+.+++++..
T Consensus 361 ~~~~~~~~~PiYe~~pGW~~~~~g~~~~~~LP~~A~~Yi~~iE------E~~gvPV~iistGP~ 418 (430)
T COG0104 361 DLDDLARCEPIYETLPGWSEDTTGVKSYDDLPENARKYIKRIE------ELVGVPVTIISTGPE 418 (430)
T ss_pred chhhhhcCceeeeccCCCccccccccchHHcCHHHHHHHHHHH------HHHCCCEEEEecCCC
Confidence 46677788877777777754 46899999999994 678999999988543
No 469
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=24.32 E-value=1.4e+02 Score=18.83 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=25.9
Q ss_pred EEEEEecC-CChHHHHHHHHHHHhhcc--CCceEEEEEccC
Q 028917 5 IYIVYYSL-YGHVETMAREVQRGANSV--LGVEATLWQVPE 42 (202)
Q Consensus 5 iliiy~S~-~G~T~~la~~i~~~~~~~--~g~~v~~~~l~~ 42 (202)
.+-+|-+. +-++.+..+.+.+-+++. ...+.+++|+.+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~ 43 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK 43 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc
Confidence 34566555 477888888877777762 236788888865
No 470
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=24.30 E-value=1.2e+02 Score=25.54 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=33.4
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC--cCChhhhc--cCCeeEEeccccCCcchHHHHHHHH
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP--VIRPHQLK--EADGFLFGFPSRFGVMAAQCKAFFD 95 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~--~ad~ii~gsP~y~g~~~~~~k~fld 95 (202)
...+.+.+++ .|++|+.+.+.+..+. ++.+ ......+. ..|.|+|.||. .++.|++
T Consensus 159 ~~~L~~~L~~-~G~~V~~~~vY~~~~~------------~~~~~~~~~~~~l~~~~~d~v~FtS~s-------tv~~f~~ 218 (381)
T PRK07239 159 LPEFLEALRA-AGAEVVPVPVYRWVPP------------PDPGPLDRLVDAIASRGLDAVTFTSAP-------AVAALLE 218 (381)
T ss_pred hHHHHHHHHH-CCCEEEEeCcEEEcCC------------CChhHHHHHHHHHHcCCccEEEEcCHH-------HHHHHHH
Confidence 3456667776 6777766555432110 0000 01223343 47999999975 5788888
Q ss_pred hhh
Q 028917 96 ATY 98 (202)
Q Consensus 96 ~~~ 98 (202)
.+.
T Consensus 219 ~l~ 221 (381)
T PRK07239 219 RAR 221 (381)
T ss_pred HHH
Confidence 764
No 471
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=24.24 E-value=1.1e+02 Score=24.37 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=26.8
Q ss_pred eEEEEEec--CC-ChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYS--LY-GHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S--~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||++|..+ +. |.+......+++.+.+ .|.+|.++....
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~-~g~~v~~~~~~~ 41 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRA-RGHEVLVIAPGP 41 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 57777744 33 5555666778888888 899998877654
No 472
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=24.16 E-value=1.8e+02 Score=23.22 Aligned_cols=96 Identities=17% Similarity=0.104 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc--CCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHH
Q 028917 16 VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKM--KAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAF 93 (202)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~f 93 (202)
-+.+.+.+.+.+. .++++.++.-+ |....+.- ..... -+.. .....+.++|.+|+|.-..+....+ .+.+
T Consensus 14 De~~l~~~l~~l~--~~~~~~v~s~~---p~~~~~~~~v~~~~r-~~~~-~~~~~l~~~D~vI~gGG~l~~d~~~-~~~~ 85 (298)
T TIGR03609 14 DEALLAALLRELP--PGVEPTVLSND---PAETAKLYGVEAVNR-RSLL-AVLRALRRADVVIWGGGSLLQDVTS-FRSL 85 (298)
T ss_pred hHHHHHHHHHhcC--CCCeEEEecCC---hHHHHhhcCceEEcc-CCHH-HHHHHHHHCCEEEECCcccccCCcc-cccH
Confidence 3677778877775 35555554322 22111000 00000 0111 1356789999999998766654332 2322
Q ss_pred HHhhhhhhhhccCCCCceEEEEecCCC
Q 028917 94 FDATYELWASQALAGKPAGIFWSTGFH 120 (202)
Q Consensus 94 ld~~~~~~~~~~l~gK~~~~~~t~g~~ 120 (202)
+-.+.-.. -..+.||++.+++.+-++
T Consensus 86 ~~~~~~~~-~a~~~~k~~~~~g~giGP 111 (298)
T TIGR03609 86 LYYLGLMR-LARLFGKPVILWGQGIGP 111 (298)
T ss_pred HHHHHHHH-HHHHcCCCEEEEecccCC
Confidence 22111000 013468998888776443
No 473
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=24.12 E-value=1.6e+02 Score=22.23 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=15.8
Q ss_pred ceEEEEecCCC--CCChHHHHHHHHHHHHHcCcE
Q 028917 110 PAGIFWSTGFH--GGGQELTALTAVTQLAHHGML 141 (202)
Q Consensus 110 ~~~~~~t~g~~--~g~~~~~l~~~~~~l~~~g~~ 141 (202)
++++++|=|-+ .||.|...+++...+...|..
T Consensus 3 kIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~ 36 (185)
T PF09314_consen 3 KIAIIGTRGIPARYGGFETFVEELAPRLVSKGID 36 (185)
T ss_pred eEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCce
Confidence 44555554432 355555555555555444443
No 474
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=23.92 E-value=1.7e+02 Score=25.12 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=28.5
Q ss_pred CceEEEEEe-cC---CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYY-SL---YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~-S~---~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.|||+++.. ++ .|-.+.....+++.+.+ .|++|.++-...
T Consensus 58 ~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~-~G~eV~vlt~~~ 101 (465)
T PLN02871 58 PRRIALFVEPSPFSYVSGYKNRFQNFIRYLRE-MGDEVLVVTTDE 101 (465)
T ss_pred CceEEEEECCcCCcccccHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 358887753 43 25556666788888988 899999987644
No 475
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=23.91 E-value=3.3e+02 Score=20.73 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=36.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc-----CCCCCCCCCC-cCChhhhccCCeeEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKM-----KAPPKTNDVP-VIRPHQLKEADGFLF 77 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~l~~ad~ii~ 77 (202)
||.||=+ .|+ +...++..+.+ .|.+|.+++-............ ..... .... ....+.+.++|.||+
T Consensus 2 kI~IIGG--~G~---mG~ala~~L~~-~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~-~~~~~~~~~ea~~~aDvVil 74 (219)
T TIGR01915 2 KIAVLGG--TGD---QGKGLALRLAK-AGNKIIIGSRDLEKAEEAAAKALEELGHGGSD-IKVTGADNAEAAKRADVVIL 74 (219)
T ss_pred EEEEEcC--CCH---HHHHHHHHHHh-CCCEEEEEEcCHHHHHHHHHHHHhhccccCCC-ceEEEeChHHHHhcCCEEEE
Confidence 6777621 343 55666677666 6878877654321111100000 00000 0000 012355789999999
Q ss_pred ecccc
Q 028917 78 GFPSR 82 (202)
Q Consensus 78 gsP~y 82 (202)
+.|..
T Consensus 75 avp~~ 79 (219)
T TIGR01915 75 AVPWD 79 (219)
T ss_pred ECCHH
Confidence 99954
No 476
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=23.85 E-value=5e+02 Score=22.79 Aligned_cols=146 Identities=12% Similarity=0.157 Sum_probs=71.7
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc---CCCCC-CCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHH
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKM---KAPPK-TNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFF 94 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fl 94 (202)
+...++..+.+ .|.+|.+++.....-....+.. ..... .++.. +....+.++|.||+.-|- +..++.++
T Consensus 12 MG~~lA~nL~~-~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~-e~v~~l~~~d~Iil~v~~-----~~~v~~vi 84 (470)
T PTZ00142 12 MGQNLALNIAS-RGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLE-ELVNSLKKPRKVILLIKA-----GEAVDETI 84 (470)
T ss_pred HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHH-HHHhcCCCCCEEEEEeCC-----hHHHHHHH
Confidence 44556666666 7889999887542111111110 00000 01111 112333458877776442 23677777
Q ss_pred HhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcccccceeecCC
Q 028917 95 DATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAAD 173 (202)
Q Consensus 95 d~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (202)
+.+.. .+ .|+. +.-++. +.... .......+..+|..+++.+..=+. .+...|...+.+
T Consensus 85 ~~l~~-----~L~~g~i---IID~gn--~~~~d-t~~r~~~l~~~Gi~fldapVSGG~---------~gA~~G~~lm~G- 143 (470)
T PTZ00142 85 DNLLP-----LLEKGDI---IIDGGN--EWYLN-TERRIKRCEEKGILYLGMGVSGGE---------EGARYGPSLMPG- 143 (470)
T ss_pred HHHHh-----hCCCCCE---EEECCC--CCHHH-HHHHHHHHHHcCCeEEcCCCCCCH---------HHHhcCCEEEEe-
Confidence 77642 23 3443 222222 22223 334456778889999986664110 011122212221
Q ss_pred CCCCCCHHHHHHHHHHhHHHHHH
Q 028917 174 GSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 174 ~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
-+++..++++.+-+.++..
T Consensus 144 ----G~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 144 ----GNKEAYDHVKDILEKCSAK 162 (470)
T ss_pred ----CCHHHHHHHHHHHHHHhhh
Confidence 3467788888777777653
No 477
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=23.72 E-value=1.5e+02 Score=22.64 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=21.4
Q ss_pred ceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+.|++|++|.+- .-.-+ ....+.+++ ..+.|.++.+..
T Consensus 102 rEIlvi~gSl~t~Dp~di-~~ti~~l~~-~~IrvsvI~laa 140 (193)
T PF04056_consen 102 REILVIFGSLTTCDPGDI-HETIESLKK-ENIRVSVISLAA 140 (193)
T ss_pred eEEEEEEeecccCCchhH-HHHHHHHHH-cCCEEEEEEEhH
Confidence 358888888631 11112 234444555 577778877754
No 478
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=23.71 E-value=1.8e+02 Score=19.22 Aligned_cols=32 Identities=13% Similarity=0.038 Sum_probs=20.6
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.||++++-.+-+-|. +.+++ .|++++.+++.+
T Consensus 2 ~iY~~~~C~~c~ka~---~~L~~-~~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKAL---AWLEE-HGIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHH---HHHHH-cCCCcEEEeecc
Confidence 578888644333333 33444 688899999875
No 479
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.66 E-value=2.6e+02 Score=22.43 Aligned_cols=68 Identities=18% Similarity=0.068 Sum_probs=38.9
Q ss_pred CCceEE-EEEecC--CChH-HHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeE
Q 028917 1 MATKIY-IVYYSL--YGHV-ETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFL 76 (202)
Q Consensus 1 M~~kil-iiy~S~--~G~T-~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii 76 (202)
|| +.- |+.|+- +|.| .+=+..+++.|.+ .|+++..+..--..+.. +.+.+...+..+|.||
T Consensus 1 ~~-~a~iI~vG~ElL~G~ivdtNa~~la~~L~~-~G~~v~~~~~VgD~~~~-------------I~~~l~~a~~r~D~vI 65 (255)
T COG1058 1 MM-KAEIIAVGDELLSGRIVDTNAAFLADELTE-LGVDLARITTVGDNPDR-------------IVEALREASERADVVI 65 (255)
T ss_pred Cc-eEEEEEEccceecCceecchHHHHHHHHHh-cCceEEEEEecCCCHHH-------------HHHHHHHHHhCCCEEE
Confidence 45 544 444664 5654 3456678888888 89888766543322221 1112344556688888
Q ss_pred Ee---ccccC
Q 028917 77 FG---FPSRF 83 (202)
Q Consensus 77 ~g---sP~y~ 83 (202)
+. -||+.
T Consensus 66 ~tGGLGPT~D 75 (255)
T COG1058 66 TTGGLGPTHD 75 (255)
T ss_pred ECCCcCCCcc
Confidence 76 36653
No 480
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=23.61 E-value=46 Score=26.87 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=11.1
Q ss_pred ccCCeeEEeccc
Q 028917 70 KEADGFLFGFPS 81 (202)
Q Consensus 70 ~~ad~ii~gsP~ 81 (202)
..+||+|++||+
T Consensus 164 ~r~DGliVsTPT 175 (281)
T COG0061 164 FRGDGLIVSTPT 175 (281)
T ss_pred EecCEEEEEcCC
Confidence 579999999998
No 481
>PF03738 GSP_synth: Glutathionylspermidine synthase preATP-grasp; InterPro: IPR005494 This region contains the Glutathionylspermidine synthase enzymatic activity 6.3.1.8 from EC. This is the C-terminal region in bienzymes such as P43675 from SWISSPROT. Glutathionylspermidine (GSP) synthetases of Trypanosomatidae and Escherichia coli couple hydrolysis of ATP (to ADP and Pi) with formation of an amide bond between spermidine and the glycine carboxylate of glutathione (gamma-Glu-Cys-Gly). In the pathogenic trypanosomatids, this reaction is the penultimate step in the biosynthesis of the antioxidant metabolite, trypanothione (N1,N8-bis-(glutathionyl)spermidine), and is a target for drug design [].; PDB: 2VPM_B 2VOB_B 2VPS_A 2IO9_A 2IO8_A 2IOB_A 2IOA_B 2IO7_B 3O98_B.
Probab=23.57 E-value=1.8e+02 Score=19.13 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhccCCceEEEEEccC
Q 028917 17 ETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 17 ~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
..-+..+++.+++ +|.++.++.+.+
T Consensus 14 ~~t~~yL~~~a~q-aG~~~~~~~i~~ 38 (97)
T PF03738_consen 14 RGTVQYLMDTARQ-AGLDTRFIPIED 38 (97)
T ss_dssp HHHHHHHHHHHHH-TT-EEEEETTTT
T ss_pred HHHHHHHHHHHHH-CCCCeEEechHh
Confidence 3455677777777 899999888876
No 482
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=23.56 E-value=1.1e+02 Score=23.65 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=25.5
Q ss_pred hhccCCeeEEec---cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 68 QLKEADGFLFGF---PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 68 ~l~~ad~ii~gs---P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...++|+|++.- |.|...-...+..|+.+.. -++|+++.+++
T Consensus 87 ~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~-------~~~k~iaaIC~ 131 (221)
T cd03141 87 DPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFY-------ENGKVVAAVCH 131 (221)
T ss_pred CHhHceEEEECCCcccccccccCHHHHHHHHHHH-------HcCCEEEEEcc
Confidence 356899999874 3344444566777777653 14565555544
No 483
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=23.48 E-value=1.9e+02 Score=23.96 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=35.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
++.|+.+ ..+..+|+.+++.+.- .=..+++.+..|- +......+.+...|.+|+.|..+
T Consensus 4 ~~~if~g---~s~~~La~~ia~~l~~-~l~~~~~~rF~DG----------------E~~V~i~EsVrg~dVfI~qs~~~ 62 (314)
T COG0462 4 NMKIFSG---SSNPELAEKIAKRLGI-PLGKVEVKRFPDG----------------EIYVRIEESVRGKDVFIIQSTSP 62 (314)
T ss_pred ceEEEEC---CCCHHHHHHHHHHhCC-CcccceeEEcCCC----------------cEEEEecccccCCeEEEEeCCCC
Confidence 4555544 2346688888888764 2234555554441 11112467889999998887776
No 484
>cd08517 PBP2_NikA_DppA_OppA_like_13 The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most s
Probab=23.43 E-value=1.8e+02 Score=24.90 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=25.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+-+.+.+.......+++.+++.+++ .|+++++..+
T Consensus 336 l~l~~~~~~~~~~~~a~~i~~~l~~-iGi~v~i~~~ 370 (480)
T cd08517 336 LRLDPLPYGEFWKRTAEYVKQALKE-VGIDVELRSQ 370 (480)
T ss_pred EEEEecCCCchHHHHHHHHHHHHHH-cCCEEEEEEe
Confidence 4455533333347899999999999 8999887654
No 485
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=23.42 E-value=1.1e+02 Score=22.31 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
.|.....+..+++.+.+ .|.+|.++.
T Consensus 12 ~~G~~~~~~~l~~~L~~-~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALAR-RGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHH-cCCeEEEEE
Confidence 56778888899999998 799998877
No 486
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.41 E-value=1.1e+02 Score=23.57 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=20.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|++++ +|.+ .|.-+...+++.+.+ .|.++.+++-
T Consensus 1 ~~~~v-lItG----as~gIG~~la~~l~~-~G~~v~~~~r 34 (257)
T PRK07024 1 MPLKV-FITG----ASSGIGQALAREYAR-QGATLGLVAR 34 (257)
T ss_pred CCCEE-EEEc----CCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence 55444 4433 344566666666766 6777776654
No 487
>PLN00223 ADP-ribosylation factor; Provisional
Probab=23.39 E-value=3e+02 Score=20.09 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=24.9
Q ss_pred hhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 68 QLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 68 ~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
-+.++|++|+..-.-. +..+....+.+........+.+.++.++++=
T Consensus 81 ~~~~a~~iI~V~D~s~---~~s~~~~~~~l~~~l~~~~~~~~piilv~NK 127 (181)
T PLN00223 81 YFQNTQGLIFVVDSND---RDRVVEARDELHRMLNEDELRDAVLLVFANK 127 (181)
T ss_pred HhccCCEEEEEEeCCc---HHHHHHHHHHHHHHhcCHhhCCCCEEEEEEC
Confidence 4688999999765433 2233332222221111123457788887763
No 488
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=23.34 E-value=4.7e+02 Score=22.31 Aligned_cols=67 Identities=12% Similarity=-0.054 Sum_probs=40.7
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEeccccC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gsP~y~ 83 (202)
++|.++|.. ..++.+.+.+++ .|..+-++++....|. |. .+.+.+++++.|++.==.+-
T Consensus 263 ~iV~~Gs~~----~~~~eav~~lr~-~G~kvg~l~i~~~~Pf---------------P~~~i~~~l~~~k~ViVvE~n~~ 322 (390)
T PRK08366 263 VFMGMGSLM----GTVKEAVDLLRK-EGYKVGYAKVRWFRPF---------------PKEELYEIAESVKGIAVLDRNFS 322 (390)
T ss_pred EEEEeCccH----HHHHHHHHHHHh-cCCceeeEEEeeecCC---------------CHHHHHHHHhcCCEEEEEeCCCC
Confidence 344445544 455566666676 7888888888765442 11 23456788999888765553
Q ss_pred -CcchHHHH
Q 028917 84 -GVMAAQCK 91 (202)
Q Consensus 84 -g~~~~~~k 91 (202)
|...+.++
T Consensus 323 ~Gq~g~l~~ 331 (390)
T PRK08366 323 FGQEGILFT 331 (390)
T ss_pred CCcccHHHH
Confidence 55433333
No 489
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=23.33 E-value=1.9e+02 Score=20.15 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=29.3
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
...+..+|++|+....-...-...+..|++.+.. ....+.+..++++-
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~----~~~~~~pivvv~nK 114 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELRE----YADPNVVIMLVGNK 114 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hCCCCCeEEEEEEc
Confidence 4457889999999776543323344556666532 11246788777763
No 490
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=23.33 E-value=1.6e+02 Score=22.52 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=29.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
..++|+.|..|-=.-+-+.+++.+.+ .|+.|.=+|-..
T Consensus 2 Dt~~v~~SGDgGw~~~d~~~a~~l~~-~G~~VvGvdsl~ 39 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLDKQIAEALAK-QGVPVVGVDSLR 39 (192)
T ss_pred CEEEEEEeCCCCchhhhHHHHHHHHH-CCCeEEEechHH
Confidence 46888999987666888889999998 898877666543
No 491
>cd08513 PBP2_thermophilic_Hb8_like The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold. This family includes the substrate-binding domain of an ABC-type oligopeptide-binding protein Hb8 from Thermus thermophilius and its closest homologs from other bacteria. The structural topology of this substrate-binding domain is similar to those of DppA from Escherichia coli and OppA from Salmonella typhimurium, and thus belongs to the type 2 periplasmic binding fold protein (PBP2) superfamily. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. The type 2 periplasmic binding proteins are soluble ligand-binding components of ABC or tripartite ATP-independent transporter
Probab=23.25 E-value=1.8e+02 Score=25.04 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=25.3
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+++.+.......+++.+++.+++ .|+++++..+.
T Consensus 341 l~~~~~~~~~~~~a~~i~~~l~~-iGi~v~~~~~~ 374 (482)
T cd08513 341 LLTTSGNAVRERVAELIQQQLAK-IGIDVEIENVP 374 (482)
T ss_pred EEeCCCChHHHHHHHHHHHHHHH-cCCEEEEeeCC
Confidence 34433335568899999999999 89998876653
No 492
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.24 E-value=4.8e+02 Score=22.36 Aligned_cols=71 Identities=11% Similarity=-0.098 Sum_probs=37.3
Q ss_pred cCCeeEEeccccCCcchHH----HHHHHHhhhhhhhhcc-CCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 71 EADGFLFGFPSRFGVMAAQ----CKAFFDATYELWASQA-LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~----~k~fld~~~~~~~~~~-l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
..+.|.+-+|-|.|+...- ++.+++++.. ... -..+.+-+++............+.++.+.|...|+.+..
T Consensus 116 ~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~---~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~ 191 (427)
T cd01971 116 GAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVG---QSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNI 191 (427)
T ss_pred CCCEEEEECCCcCcccccHHHHHHHHHHHHhcc---CCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEE
Confidence 4678889999998865433 4444444321 110 122335555432110110011256677788888988753
No 493
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=23.24 E-value=2.5e+02 Score=20.23 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=29.4
Q ss_pred ceEEEEEecCC-ChHHHHHHHHHHHhhccCCce---EEEEEccC
Q 028917 3 TKIYIVYYSLY-GHVETMAREVQRGANSVLGVE---ATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~---v~~~~l~~ 42 (202)
.||.||..+=+ --|+.|.+-..+.+.+ .|++ ++++.++-
T Consensus 8 ~ri~IV~s~fn~~I~~~Ll~ga~~~l~~-~gv~~~~i~v~~VPG 50 (141)
T PLN02404 8 LRFGVVVARFNEIITKNLLEGALETFKR-YSVKEENIDVVWVPG 50 (141)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHH-cCCCccceEEEEcCc
Confidence 37888886655 4588999999999988 7875 56666654
No 494
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.20 E-value=1e+02 Score=25.13 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=14.9
Q ss_pred ChhhhccCCeeEEecccc
Q 028917 65 RPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y 82 (202)
+.+.+.+||.||.+.|.-
T Consensus 195 l~~~~~~ADIVV~avG~~ 212 (285)
T PRK14189 195 LAAHTRQADIVVAAVGKR 212 (285)
T ss_pred HHHHhhhCCEEEEcCCCc
Confidence 456789999999999954
No 495
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=23.18 E-value=5.1e+02 Score=22.68 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcC-C-CCCC-CCCCcCChhhhccCCeeEEeccccCCcchHHHHHHH
Q 028917 18 TMAREVQRGANSVLGVEATLWQVPETLSSVILQKMK-A-PPKT-NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFF 94 (202)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fl 94 (202)
.|...++..+.+ .|.+|.+++.....-........ . .... ++.. .....+..+|.||+..|.. ..+...+
T Consensus 9 ~MG~~mA~nL~~-~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~-e~v~~l~~~dvIil~v~~~-----~~v~~Vi 81 (467)
T TIGR00873 9 VMGSNLALNMAD-HGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIE-EFVQSLERPRKIMLMVKAG-----APVDAVI 81 (467)
T ss_pred HHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHH-HHHhhcCCCCEEEEECCCc-----HHHHHHH
Confidence 366777777777 78888888765421111111100 0 0000 1111 1233445689898887762 4566677
Q ss_pred HhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcccccceeecCC
Q 028917 95 DATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAAD 173 (202)
Q Consensus 95 d~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 173 (202)
+.+.. .+ .|+. +.-++. .....+ ......+..+|...++.+..=++ .+...|...+.
T Consensus 82 ~~l~~-----~L~~g~i---IID~gn--s~~~~t-~~~~~~l~~~gi~fvdapVsGG~---------~gA~~G~~im~-- 139 (467)
T TIGR00873 82 NQLLP-----LLEKGDI---IIDGGN--SHYPDT-ERRYKELKAKGILFVGSGVSGGE---------EGARKGPSIMP-- 139 (467)
T ss_pred HHHHh-----hCCCCCE---EEECCC--cCHHHH-HHHHHHHHhcCCEEEcCCCCCCH---------HHHhcCCcCCC--
Confidence 66642 23 3442 223332 112222 23345678889999886664110 01112221111
Q ss_pred CCCCCCHHHHHHHHHHhHHHHHH
Q 028917 174 GSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 174 ~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
--+++..++++.+-+.++..
T Consensus 140 ---GG~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 140 ---GGSAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred ---CCCHHHHHHHHHHHHHHhhh
Confidence 13567888888877777654
No 496
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=23.17 E-value=3.7e+02 Score=20.98 Aligned_cols=104 Identities=21% Similarity=0.224 Sum_probs=51.8
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCce--EEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCC
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVE--ATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFG 84 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~--v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g 84 (202)
|||.-.+| +++.+.|.+.. ... +.++++.+.+|... |.|+...+++.++|.+|.- +
T Consensus 2 vi~~G~yG--eR~~~~i~~~~----~~~~~v~~~~~p~~l~efI-----------d~pee~Lp~i~~~Dl~I~y-----~ 59 (217)
T PF02593_consen 2 VIYDGKYG--ERVIENIKNYF----DFCRSVIVYEIPEDLPEFI-----------DDPEEYLPKIPEADLLIAY-----G 59 (217)
T ss_pred eeeeCcch--HHHHHHHHhcC----CCCceEEEEeCCccccccc-----------cChHHHccCCCCCCEEEEe-----c
Confidence 55544456 45555555443 334 77778776444211 1222234448999988852 1
Q ss_pred cchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 85 VMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 85 ~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
-.|-..-...+.+. . +|-++.++.+.. +. ......+.+.+...|..++
T Consensus 60 lHPDl~~~l~~~~~------e-~g~kavIvp~~~--~~--~g~~~~lk~~~e~~gi~~~ 107 (217)
T PF02593_consen 60 LHPDLTYELPEIAK------E-AGVKAVIVPSES--PK--PGLRRQLKKQLEEFGIEVE 107 (217)
T ss_pred cCchhHHHHHHHHH------H-cCCCEEEEecCC--Cc--cchHHHHHHHHHhcCceee
Confidence 22223333333331 2 455554443322 11 1234566777787787666
No 497
>cd08514 PBP2_AppA_like The substrate-binding component of the oligopeptide-binding protein, AppA, from Bacillus subtilis contains the type 2 periplasmic-binding fold. This family represents the substrate-binding domain of the oligopeptide-binding protein, AppA, from Bacillus subtilis and its closest homologs from other bacteria and archaea. Bacillus subtilis has three ABC-type peptide transport systems, a dipeptide-binding protein (DppA) and two oligopeptide-binding proteins (OppA and AppA) with overlapping specificity. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and also is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains correspondin
Probab=23.15 E-value=1.9e+02 Score=24.83 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=26.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+-+++.+.+.....+++.|++.+++ .|+++++..+.
T Consensus 341 l~l~~~~~~~~~~~~a~~i~~~l~~-~Gi~v~~~~~~ 376 (483)
T cd08514 341 FTLLTNQGNPVREQAATIIQQQLKE-IGIDVKIRVLE 376 (483)
T ss_pred EEEEecCCCchHHHHHHHHHHHHHh-cCcEEEEEEec
Confidence 3344433334567899999999999 89998876654
No 498
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=23.14 E-value=1.7e+02 Score=23.50 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=24.2
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
-.+|+.|=| .|-| .+|+.+++.+++ .+.++.+++-
T Consensus 2 pLiil~G~P~SGKT-t~a~~L~~~~~~-~~~~v~~i~~ 37 (270)
T PF08433_consen 2 PLIILCGLPCSGKT-TRAKELKKYLEE-KGKEVVIISD 37 (270)
T ss_dssp -EEEEE--TTSSHH-HHHHHHHHHHHH-TT--EEEE-T
T ss_pred EEEEEEcCCCCcHH-HHHHHHHHHHHh-cCCEEEEEcc
Confidence 477888888 6888 789999999998 7888888874
No 499
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.13 E-value=4.9e+02 Score=22.39 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=40.4
Q ss_pred cCCeeEEeccccCCcchHHHHHHHHhhhhhhhhcc---CCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 71 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQA---LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~---l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
....+.+-+|-|-|+...-...+++.+...+.... -..+.+-++. ++...+ + .+.++.+.|...|+.++
T Consensus 120 ~~~vi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~--~~~~~~-d-~~~el~~lL~~~Gl~~~ 191 (435)
T cd01974 120 DFPVPFANTPSFVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIP--GFDTYA-G-NMREIKRLLELMGVDYT 191 (435)
T ss_pred CCeEEEecCCCCccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEEC--CCCCCc-c-hHHHHHHHHHHcCCCEE
Confidence 46788888999998877666666666643221111 1222344443 222111 1 26677888888898876
No 500
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.08 E-value=1.5e+02 Score=24.27 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=13.9
Q ss_pred ChhhhccCCeeEEecccc
Q 028917 65 RPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y 82 (202)
+.+.+.+||.||.+.+.-
T Consensus 195 l~~~~~~ADIvIsAvGkp 212 (297)
T PRK14186 195 LASITREADILVAAAGRP 212 (297)
T ss_pred HHHHHhhCCEEEEccCCc
Confidence 345679999999988754
Done!