Query 028917
Match_columns 202
No_of_seqs 232 out of 2014
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5l_A Trp repressor binding p 100.0 5.4E-35 1.8E-39 222.8 20.8 195 2-202 5-200 (200)
2 3b6i_A Flavoprotein WRBA; flav 100.0 1.1E-33 3.7E-38 215.3 24.2 196 1-202 1-198 (198)
3 2zki_A 199AA long hypothetical 100.0 5.7E-33 1.9E-37 211.6 20.2 192 2-202 4-196 (199)
4 1ydg_A Trp repressor binding p 100.0 2.9E-33 9.9E-38 215.2 18.0 191 2-201 6-201 (211)
5 3d7n_A Flavodoxin, WRBA-like p 100.0 2.6E-32 9E-37 207.3 16.1 179 3-202 7-189 (193)
6 2ark_A Flavodoxin; FMN, struct 100.0 9.9E-30 3.4E-34 192.3 17.3 164 2-201 4-169 (188)
7 3hly_A Flavodoxin-like domain; 100.0 1.1E-28 3.7E-33 182.2 16.1 143 4-199 2-144 (161)
8 3fni_A Putative diflavin flavo 100.0 2.2E-28 7.4E-33 180.2 16.1 144 3-199 5-149 (159)
9 2vzf_A NADH-dependent FMN redu 100.0 3.4E-28 1.2E-32 185.2 10.0 173 1-199 1-177 (197)
10 5nul_A Flavodoxin; electron tr 99.9 3.5E-27 1.2E-31 169.6 13.7 135 5-195 1-137 (138)
11 3f6r_A Flavodoxin; FMN binding 99.9 6.1E-27 2.1E-31 170.3 13.5 143 1-196 1-147 (148)
12 1sqs_A Conserved hypothetical 99.9 6E-27 2.1E-31 183.6 12.3 168 1-199 1-179 (242)
13 2q62_A ARSH; alpha/beta, flavo 99.9 3.2E-25 1.1E-29 173.9 17.1 176 2-201 34-212 (247)
14 2fzv_A Putative arsenical resi 99.9 1.6E-25 5.6E-30 177.7 13.0 178 1-201 57-237 (279)
15 3fvw_A Putative NAD(P)H-depend 99.9 2.7E-26 9.1E-31 174.0 8.0 177 1-200 1-185 (192)
16 1f4p_A Flavodoxin; electron tr 99.9 2.1E-25 7.1E-30 161.9 12.3 141 4-196 2-146 (147)
17 2fz5_A Flavodoxin; alpha/beta 99.9 4E-25 1.4E-29 158.3 12.7 133 5-195 2-136 (137)
18 2q9u_A A-type flavoprotein; fl 99.9 2E-24 6.8E-29 181.2 15.8 149 2-201 256-407 (414)
19 1rtt_A Conserved hypothetical 99.9 4.5E-25 1.5E-29 167.3 10.1 173 3-199 7-184 (193)
20 3u7r_A NADPH-dependent FMN red 99.9 4.5E-24 1.5E-28 161.1 14.9 173 1-199 1-180 (190)
21 3gfs_A FMN-dependent NADPH-azo 99.9 2.2E-25 7.4E-30 166.4 7.0 165 4-199 2-169 (174)
22 4hs4_A Chromate reductase; tri 99.9 1.7E-24 5.8E-29 164.9 12.0 175 3-201 7-188 (199)
23 1rli_A Trp repressor binding p 99.9 1.3E-25 4.4E-30 168.7 5.2 166 1-195 3-183 (184)
24 3k1y_A Oxidoreductase; structu 99.9 1.6E-24 5.6E-29 163.8 10.6 171 2-201 11-190 (191)
25 1czn_A Flavodoxin; FMN binding 99.9 4.2E-23 1.4E-27 153.1 17.1 164 3-197 1-167 (169)
26 1obo_A Flavodoxin; electron tr 99.9 2E-22 6.7E-27 149.5 17.7 163 3-197 2-167 (169)
27 2ohh_A Type A flavoprotein FPR 99.9 2.7E-23 9.3E-28 173.6 14.0 147 3-198 257-403 (404)
28 3svl_A Protein YIEF; E. coli C 99.9 2.1E-23 7.1E-28 158.1 10.1 177 3-201 5-187 (193)
29 2hpv_A FMN-dependent NADH-azor 99.9 1.2E-22 4E-27 155.6 13.1 170 1-195 1-206 (208)
30 1t0i_A YLR011WP; FMN binding p 99.9 1.5E-23 5.3E-28 158.4 8.0 131 4-144 2-149 (191)
31 1ykg_A SIR-FP, sulfite reducta 99.9 1.7E-22 5.9E-27 149.7 13.1 145 3-199 10-155 (167)
32 1ag9_A Flavodoxin; electron tr 99.9 8.6E-22 3E-26 147.0 16.4 163 4-198 2-168 (175)
33 2wc1_A Flavodoxin; electron tr 99.9 1.9E-22 6.6E-27 151.4 12.7 166 1-198 1-177 (182)
34 1t5b_A Acyl carrier protein ph 99.9 2.7E-22 9.3E-27 152.4 13.7 141 1-144 1-170 (201)
35 3s2y_A Chromate reductase; ura 99.8 1.1E-24 3.8E-29 165.9 0.0 176 3-200 7-187 (199)
36 1yob_A Flavodoxin 2, flavodoxi 99.9 6.1E-22 2.1E-26 148.4 14.2 164 3-197 1-175 (179)
37 1e5d_A Rubredoxin\:oxygen oxid 99.9 9.7E-22 3.3E-26 164.1 16.7 147 3-200 253-399 (402)
38 4dik_A Flavoprotein; TM0755, e 99.9 2.5E-22 8.5E-27 168.1 12.3 144 3-194 266-409 (410)
39 1ycg_A Nitric oxide reductase; 99.9 7.5E-22 2.6E-26 164.6 14.1 145 3-198 252-397 (398)
40 2fcr_A Flavodoxin; electron tr 99.9 4.9E-21 1.7E-25 142.6 14.8 163 4-197 1-171 (173)
41 2hna_A Protein MIOC, flavodoxi 99.9 2.9E-23 9.8E-28 150.8 2.4 145 1-197 1-146 (147)
42 3f2v_A General stress protein 99.9 1.3E-21 4.5E-26 147.8 11.2 132 1-145 1-147 (192)
43 3klb_A Putative flavoprotein; 99.9 7.2E-21 2.5E-25 140.3 14.8 125 2-143 4-139 (162)
44 3r6w_A FMN-dependent NADH-azor 99.9 6E-21 2E-25 146.6 13.0 141 1-144 1-180 (212)
45 3lcm_A SMU.1420, putative oxid 99.9 2.1E-21 7.2E-26 147.5 10.2 139 3-144 1-159 (196)
46 1d4a_A DT-diaphorase, quinone 99.8 1.4E-21 4.9E-26 155.6 8.6 117 1-120 1-151 (273)
47 3edo_A Flavoprotein, putative 99.8 3.4E-21 1.2E-25 140.5 9.4 127 1-143 2-137 (151)
48 2amj_A Modulator of drug activ 99.8 2.9E-20 9.8E-25 142.0 14.8 125 3-144 13-175 (204)
49 3p0r_A Azoreductase; structura 99.8 1.1E-20 3.8E-25 145.0 12.4 142 1-144 3-179 (211)
50 2bmv_A Flavodoxin; electron tr 99.8 1.1E-20 3.6E-25 139.6 11.4 159 1-196 1-162 (164)
51 4ici_A Putative flavoprotein; 99.8 4E-20 1.4E-24 137.5 14.1 125 2-143 13-148 (171)
52 3rpe_A MDAB, modulator of drug 99.8 1.1E-19 3.8E-24 139.5 13.4 127 2-145 25-189 (218)
53 1bvy_F Protein (cytochrome P45 99.8 3.2E-20 1.1E-24 140.2 10.3 144 3-198 22-167 (191)
54 3u7i_A FMN-dependent NADH-azor 99.8 7.3E-19 2.5E-23 135.9 16.2 172 2-197 4-213 (223)
55 3tem_A Ribosyldihydronicotinam 99.8 4E-20 1.4E-24 143.5 8.6 115 3-120 2-150 (228)
56 4gi5_A Quinone reductase; prot 99.8 2.7E-19 9.4E-24 142.2 8.2 117 2-120 22-178 (280)
57 3ha2_A NADPH-quinone reductase 99.7 6.4E-18 2.2E-22 126.0 9.6 120 4-144 2-138 (177)
58 3l9w_A Glutathione-regulated p 99.7 1.2E-17 4.1E-22 140.0 8.6 160 3-199 237-410 (413)
59 3hr4_A Nitric oxide synthase, 99.7 9.8E-16 3.4E-20 117.4 15.8 117 3-144 41-158 (219)
60 2bpo_A CPR, P450R, NADPH-cytoc 99.7 7.3E-16 2.5E-20 136.4 14.3 148 3-199 50-200 (682)
61 2xod_A NRDI protein, NRDI; fla 99.6 1.8E-14 6.1E-19 100.6 9.0 115 5-194 1-117 (119)
62 3qe2_A CPR, P450R, NADPH--cyto 99.5 4.2E-13 1.4E-17 117.6 15.0 121 3-144 19-142 (618)
63 1tll_A Nitric-oxide synthase, 99.4 3.2E-12 1.1E-16 113.3 16.2 146 4-199 13-199 (688)
64 1rlj_A NRDI protein; flavoprot 99.2 3.2E-11 1.1E-15 86.2 5.9 119 4-196 10-130 (139)
65 3n3a_C Protein NRDI; ribonucle 99.0 2E-09 6.7E-14 77.3 7.6 89 69-195 56-150 (153)
66 2kyr_A Fructose-like phosphotr 97.5 0.00034 1.2E-08 47.3 7.0 84 1-117 4-89 (111)
67 2m1z_A LMO0427 protein; homolo 97.5 0.00035 1.2E-08 46.9 6.7 82 1-116 1-85 (106)
68 1tvm_A PTS system, galactitol- 97.0 0.0022 7.5E-08 43.6 6.8 60 2-82 21-80 (113)
69 1e2b_A Enzyme IIB-cellobiose; 96.9 0.0028 9.5E-08 42.6 6.4 57 2-80 3-59 (106)
70 2l2q_A PTS system, cellobiose- 96.2 0.0055 1.9E-07 41.2 4.2 57 3-81 5-61 (109)
71 3nbm_A PTS system, lactose-spe 96.2 0.015 5.1E-07 39.1 6.3 80 3-116 7-86 (108)
72 2r48_A Phosphotransferase syst 96.0 0.024 8.1E-07 37.9 6.4 79 3-116 3-84 (106)
73 3czc_A RMPB; alpha/beta sandwi 95.9 0.0078 2.7E-07 40.5 3.9 57 2-81 18-77 (110)
74 2r4q_A Phosphotransferase syst 95.8 0.02 7E-07 38.2 5.6 79 3-116 3-84 (106)
75 1vkr_A Mannitol-specific PTS s 93.8 0.083 2.8E-06 36.3 4.5 35 3-38 14-49 (125)
76 3rht_A (gatase1)-like protein; 93.7 0.2 7E-06 38.8 7.1 55 2-79 4-58 (259)
77 4gud_A Imidazole glycerol phos 93.4 0.11 3.7E-06 38.7 4.9 46 1-77 1-46 (211)
78 3kkl_A Probable chaperone prot 93.0 0.25 8.5E-06 37.9 6.5 40 2-42 3-52 (244)
79 3pdu_A 3-hydroxyisobutyrate de 92.6 1.7 5.9E-05 33.6 11.1 116 1-146 1-120 (287)
80 3g0o_A 3-hydroxyisobutyrate de 91.9 3 0.0001 32.6 11.8 117 2-146 7-127 (303)
81 1u9c_A APC35852; structural ge 91.8 1.5 5.1E-05 32.6 9.5 105 1-117 4-131 (224)
82 4e08_A DJ-1 beta; flavodoxin-l 91.6 0.25 8.6E-06 36.1 4.9 100 1-116 4-108 (190)
83 3m3p_A Glutamine amido transfe 91.5 0.77 2.6E-05 35.3 7.7 55 2-80 3-58 (250)
84 4e5v_A Putative THUA-like prot 91.4 2.2 7.5E-05 33.4 10.3 76 4-97 6-83 (281)
85 3ot1_A 4-methyl-5(B-hydroxyeth 91.0 0.26 8.9E-06 36.7 4.4 101 1-117 8-113 (208)
86 2rk3_A Protein DJ-1; parkinson 91.0 0.37 1.3E-05 35.4 5.2 100 1-116 2-107 (197)
87 3n7t_A Macrophage binding prot 90.9 0.69 2.3E-05 35.5 6.8 39 3-42 10-58 (247)
88 4gdh_A DJ-1, uncharacterized p 90.9 0.21 7.3E-06 36.8 3.8 38 2-42 4-41 (194)
89 2pv7_A T-protein [includes: ch 90.8 1.2 4.2E-05 34.8 8.4 66 1-98 20-86 (298)
90 3l3b_A ES1 family protein; ssg 90.5 1.2 4E-05 34.1 7.8 41 1-42 22-65 (242)
91 3doj_A AT3G25530, dehydrogenas 90.3 4.4 0.00015 31.8 11.3 116 3-146 22-140 (310)
92 1t0b_A THUA-like protein; treh 90.1 2.4 8.1E-05 32.6 9.3 60 20-97 34-94 (252)
93 3qha_A Putative oxidoreductase 89.7 5.9 0.0002 30.8 12.4 116 3-147 16-131 (296)
94 2ab0_A YAJL; DJ-1/THIJ superfa 89.6 0.32 1.1E-05 36.0 3.9 98 1-117 1-108 (205)
95 2h78_A Hibadh, 3-hydroxyisobut 89.4 2.8 9.7E-05 32.6 9.5 114 3-145 4-121 (302)
96 1iow_A DD-ligase, DDLB, D-ALA\ 88.3 1.8 6.3E-05 33.4 7.7 41 1-42 1-44 (306)
97 1ka9_H Imidazole glycerol phos 88.3 0.79 2.7E-05 33.7 5.2 33 1-39 1-33 (200)
98 2iuf_A Catalase; oxidoreductas 88.1 1.7 5.8E-05 38.3 7.9 92 3-116 530-640 (688)
99 4eg0_A D-alanine--D-alanine li 87.6 1.9 6.4E-05 33.9 7.4 41 1-42 12-55 (317)
100 1vhq_A Enhancing lycopene bios 87.5 2.8 9.4E-05 31.5 8.0 40 2-42 6-48 (232)
101 3c24_A Putative oxidoreductase 87.3 1.9 6.4E-05 33.4 7.1 77 1-97 10-87 (286)
102 1vpd_A Tartronate semialdehyde 87.1 3.4 0.00012 32.0 8.6 116 1-145 4-123 (299)
103 1qv9_A F420-dependent methylen 86.8 2 6.9E-05 32.7 6.5 91 1-117 2-100 (283)
104 4huj_A Uncharacterized protein 86.3 1 3.5E-05 33.6 4.9 78 2-97 23-101 (220)
105 3efe_A THIJ/PFPI family protei 85.8 0.96 3.3E-05 33.6 4.5 39 71-116 74-113 (212)
106 3l7n_A Putative uncharacterize 84.8 4.6 0.00016 30.4 8.0 51 4-78 2-52 (236)
107 1rw7_A YDR533CP; alpha-beta sa 84.7 5.1 0.00018 30.3 8.3 40 2-42 3-52 (243)
108 4ezb_A Uncharacterized conserv 83.8 14 0.00048 29.0 12.4 114 1-144 23-144 (317)
109 1yb4_A Tartronic semialdehyde 83.8 12 0.00041 28.7 10.2 75 2-95 3-77 (295)
110 3pef_A 6-phosphogluconate dehy 83.5 13 0.00046 28.5 11.0 115 3-146 2-120 (287)
111 4e21_A 6-phosphogluconate dehy 83.4 11 0.00039 30.3 10.2 115 3-147 23-141 (358)
112 3l4e_A Uncharacterized peptida 83.3 1.2 4E-05 33.2 3.9 24 66-93 74-97 (206)
113 3r6d_A NAD-dependent epimerase 82.4 11 0.00037 27.4 9.1 88 1-97 3-95 (221)
114 4dll_A 2-hydroxy-3-oxopropiona 81.6 8.7 0.0003 30.2 8.7 117 3-147 32-150 (320)
115 1qdl_B Protein (anthranilate s 81.4 2.9 9.9E-05 30.4 5.5 50 5-81 4-56 (195)
116 2iuy_A Avigt4, glycosyltransfe 81.1 2 6.9E-05 33.6 4.9 39 3-42 4-57 (342)
117 3uk7_A Class I glutamine amido 80.8 5.1 0.00017 32.6 7.3 37 2-41 12-48 (396)
118 1oi4_A Hypothetical protein YH 80.6 6.4 0.00022 28.5 7.1 39 1-42 22-60 (193)
119 1o1y_A Conserved hypothetical 80.4 5.7 0.0002 30.0 7.0 52 4-79 14-65 (239)
120 2vpi_A GMP synthase; guanine m 80.4 2.4 8.2E-05 31.7 4.8 34 2-41 24-57 (218)
121 3l6d_A Putative oxidoreductase 80.3 8.8 0.0003 30.0 8.3 114 3-145 10-125 (306)
122 3mc3_A DSRE/DSRF-like family p 80.0 4.8 0.00016 27.5 5.9 41 1-42 14-56 (134)
123 1n57_A Chaperone HSP31, protei 79.7 11 0.00039 29.3 8.7 39 3-42 49-99 (291)
124 1fy2_A Aspartyl dipeptidase; s 78.8 2.1 7.3E-05 32.2 4.1 25 66-94 74-98 (229)
125 2qs7_A Uncharacterized protein 78.5 3.7 0.00013 28.5 5.0 41 1-42 6-46 (144)
126 2raf_A Putative dinucleotide-b 78.4 13 0.00045 27.1 8.4 59 3-98 20-78 (209)
127 2qv7_A Diacylglycerol kinase D 78.2 3.2 0.00011 33.1 5.2 38 2-40 24-63 (337)
128 3ius_A Uncharacterized conserv 78.2 7.3 0.00025 29.6 7.1 86 1-98 4-89 (286)
129 2ew2_A 2-dehydropantoate 2-red 78.0 9.7 0.00033 29.3 7.9 34 1-41 2-35 (316)
130 4gbj_A 6-phosphogluconate dehy 77.8 7.6 0.00026 30.3 7.2 120 1-148 4-124 (297)
131 3cne_A Putative protease I; st 77.5 8.8 0.0003 27.1 7.0 96 1-116 1-112 (175)
132 3s40_A Diacylglycerol kinase; 77.2 2.1 7.2E-05 33.7 3.8 39 2-41 8-48 (304)
133 3f5d_A Protein YDEA; unknow pr 76.8 2 7E-05 31.8 3.4 39 70-116 62-101 (206)
134 3tri_A Pyrroline-5-carboxylate 76.8 6.8 0.00023 30.2 6.6 79 2-98 3-84 (280)
135 2fgx_A Putative thioredoxin; N 76.6 4 0.00014 26.9 4.5 39 3-42 29-68 (107)
136 3gt0_A Pyrroline-5-carboxylate 76.5 2.4 8.2E-05 32.0 3.8 79 1-97 1-83 (247)
137 2a9v_A GMP synthase; structura 76.3 4.2 0.00015 30.1 5.1 49 1-78 13-61 (212)
138 3k96_A Glycerol-3-phosphate de 76.1 16 0.00054 29.4 8.8 83 3-98 30-120 (356)
139 3ej6_A Catalase-3; heme, hydro 75.5 15 0.00052 32.4 8.9 91 2-116 537-638 (688)
140 2nv0_A Glutamine amidotransfer 75.1 6 0.00021 28.6 5.6 11 68-78 35-45 (196)
141 3lwz_A 3-dehydroquinate dehydr 74.0 5.2 0.00018 28.2 4.6 80 1-97 6-98 (153)
142 3hn2_A 2-dehydropantoate 2-red 73.5 11 0.00037 29.5 7.0 73 1-83 1-81 (312)
143 2gk3_A Putative cytoplasmic pr 73.4 3.8 0.00013 31.4 4.2 15 65-79 71-85 (256)
144 2x6q_A Trehalose-synthase TRET 73.4 6.6 0.00023 31.5 5.9 40 2-42 40-80 (416)
145 3ttv_A Catalase HPII; heme ori 72.6 14 0.00048 33.0 8.0 102 2-118 600-702 (753)
146 3fse_A Two-domain protein cont 72.2 6.3 0.00022 32.0 5.4 39 1-42 9-47 (365)
147 3noq_A THIJ/PFPI family protei 71.5 11 0.00036 28.3 6.3 85 1-97 4-93 (231)
148 1yj8_A Glycerol-3-phosphate de 71.4 15 0.0005 29.5 7.6 25 67-97 99-123 (375)
149 2gek_A Phosphatidylinositol ma 71.2 6.5 0.00022 31.2 5.4 40 2-42 20-62 (406)
150 3ju3_A Probable 2-oxoacid ferr 71.0 6.6 0.00023 26.2 4.5 32 13-45 21-52 (118)
151 3qsg_A NAD-binding phosphogluc 71.0 26 0.00091 27.3 8.8 69 3-83 25-95 (312)
152 3r5x_A D-alanine--D-alanine li 70.9 5.8 0.0002 30.7 4.9 40 2-42 3-45 (307)
153 3uk7_A Class I glutamine amido 70.9 11 0.00037 30.6 6.7 38 1-41 204-241 (396)
154 3i83_A 2-dehydropantoate 2-red 70.5 18 0.00063 28.2 7.8 73 1-83 1-83 (320)
155 3gg2_A Sugar dehydrogenase, UD 70.3 45 0.0016 27.6 10.5 90 1-98 1-109 (450)
156 1wl8_A GMP synthase [glutamine 69.6 27 0.00091 24.9 8.0 33 1-41 1-33 (189)
157 3b1f_A Putative prephenate deh 68.7 36 0.0012 25.9 9.1 25 67-97 62-86 (290)
158 3cky_A 2-hydroxymethyl glutara 68.5 37 0.0013 25.9 9.2 114 3-145 5-122 (301)
159 2vrn_A Protease I, DR1199; cys 68.3 20 0.00069 25.5 7.1 100 3-117 10-117 (190)
160 3c48_A Predicted glycosyltrans 67.9 6.4 0.00022 31.8 4.7 40 2-42 20-69 (438)
161 3d54_D Phosphoribosylformylgly 67.9 7.2 0.00025 28.4 4.6 34 1-39 1-34 (213)
162 2r60_A Glycosyl transferase, g 66.0 7.7 0.00026 32.1 4.9 38 3-41 8-59 (499)
163 1f0k_A MURG, UDP-N-acetylgluco 65.8 8.8 0.0003 30.1 5.0 38 3-42 7-44 (364)
164 3ggo_A Prephenate dehydrogenas 65.7 46 0.0016 26.0 14.2 80 2-98 33-115 (314)
165 4es6_A Uroporphyrinogen-III sy 64.0 7.6 0.00026 29.3 4.2 61 20-100 18-80 (254)
166 2g5c_A Prephenate dehydrogenas 63.6 42 0.0014 25.4 8.5 70 1-82 1-73 (281)
167 3l18_A Intracellular protease 63.5 29 0.001 24.0 7.0 37 3-42 3-39 (168)
168 3re1_A Uroporphyrinogen-III sy 63.1 9.1 0.00031 29.3 4.5 61 20-100 26-88 (269)
169 3soz_A ORF 245 protein, cytopl 63.1 4.4 0.00015 31.1 2.6 46 20-81 35-80 (248)
170 1jx7_A Hypothetical protein YC 62.9 15 0.00051 23.8 5.0 40 1-42 1-44 (117)
171 3fro_A GLGA glycogen synthase; 62.9 9.2 0.00032 30.6 4.7 38 3-41 3-44 (439)
172 2g2c_A Putative molybdenum cof 62.6 11 0.00037 26.7 4.5 39 1-40 4-50 (167)
173 3qvo_A NMRA family protein; st 62.4 43 0.0015 24.5 10.9 89 1-97 21-112 (236)
174 3mw8_A Uroporphyrinogen-III sy 62.1 2.4 8.1E-05 31.9 0.9 26 66-98 45-70 (240)
175 3ewn_A THIJ/PFPI family protei 60.8 15 0.00051 28.0 5.3 39 1-42 22-61 (253)
176 1e4e_A Vancomycin/teicoplanin 60.5 16 0.00055 28.8 5.7 40 2-42 3-45 (343)
177 2iw1_A Lipopolysaccharide core 60.0 9.1 0.00031 30.0 4.1 37 4-41 2-40 (374)
178 1gpw_B Amidotransferase HISH; 59.2 22 0.00075 25.6 5.8 30 4-39 2-36 (201)
179 1u0t_A Inorganic polyphosphate 59.2 9.3 0.00032 30.0 4.0 36 2-38 4-39 (307)
180 2b0j_A 5,10-methenyltetrahydro 59.0 46 0.0016 26.3 7.6 100 66-194 136-235 (358)
181 2p4q_A 6-phosphogluconate dehy 58.9 81 0.0028 26.5 10.6 121 1-145 9-133 (497)
182 3hwr_A 2-dehydropantoate 2-red 58.7 62 0.0021 25.1 9.5 82 2-98 19-107 (318)
183 3pu6_A Uncharacterized protein 58.3 24 0.00081 24.8 5.6 67 1-91 1-74 (157)
184 4gwg_A 6-phosphogluconate dehy 58.2 77 0.0026 26.6 9.6 120 3-146 5-128 (484)
185 3fij_A LIN1909 protein; 11172J 57.9 24 0.00083 26.7 6.1 40 19-78 29-68 (254)
186 2k8s_A Thioredoxin; dimer, str 57.8 26 0.00088 20.8 5.2 38 4-42 3-40 (80)
187 3ew7_A LMO0794 protein; Q8Y8U8 57.3 34 0.0012 24.4 6.7 86 4-97 2-90 (221)
188 2jmk_A Hypothetical protein TA 57.1 27 0.00093 22.3 5.0 34 3-37 75-109 (111)
189 1w85_B Pyruvate dehydrogenase 56.8 18 0.00061 28.6 5.3 75 4-96 203-278 (324)
190 3oti_A CALG3; calicheamicin, T 56.5 6.9 0.00024 31.4 2.9 37 2-40 20-56 (398)
191 2izz_A Pyrroline-5-carboxylate 55.3 45 0.0015 26.0 7.4 77 3-97 23-104 (322)
192 2khp_A Glutaredoxin; thioredox 55.2 17 0.00059 22.2 4.1 36 1-42 4-40 (92)
193 1w4r_A Thymidine kinase; type 55.0 28 0.00095 25.5 5.7 101 2-117 19-126 (195)
194 3lkv_A Uncharacterized conserv 54.9 13 0.00043 28.8 4.1 39 3-42 141-179 (302)
195 1xea_A Oxidoreductase, GFO/IDH 54.2 28 0.00097 27.1 6.1 14 70-83 62-75 (323)
196 1t57_A Conserved protein MTH16 54.1 16 0.00056 26.9 4.2 27 7-34 25-53 (206)
197 3llv_A Exopolyphosphatase-rela 53.7 12 0.0004 25.2 3.3 32 3-41 7-38 (141)
198 2fek_A Low molecular weight pr 53.2 16 0.00054 26.0 4.0 26 1-29 21-48 (167)
199 3ups_A Iojap-like protein; PSI 53.0 36 0.0012 23.4 5.6 55 14-97 17-71 (136)
200 2ahr_A Putative pyrroline carb 52.8 25 0.00087 26.3 5.4 68 3-82 4-71 (259)
201 1fo5_A Thioredoxin; disulfide 52.8 32 0.0011 20.1 7.9 42 1-42 1-44 (85)
202 2fn9_A Ribose ABC transporter, 52.8 57 0.0019 24.3 7.5 40 1-41 1-41 (290)
203 3m2p_A UDP-N-acetylglucosamine 52.8 11 0.00037 29.1 3.3 72 1-82 1-73 (311)
204 1t1v_A SH3BGRL3, SH3 domain-bi 52.7 31 0.001 21.3 5.0 34 4-42 3-42 (93)
205 2id1_A Hypothetical protein; a 52.5 39 0.0013 23.0 5.7 53 16-97 3-55 (130)
206 2uyy_A N-PAC protein; long-cha 52.3 78 0.0027 24.3 10.9 117 3-145 31-148 (316)
207 2r85_A PURP protein PF1517; AT 52.2 9.4 0.00032 29.7 2.9 34 1-42 1-34 (334)
208 3qy9_A DHPR, dihydrodipicolina 52.1 73 0.0025 24.0 8.5 22 2-29 3-24 (243)
209 1rzu_A Glycogen synthase 1; gl 52.0 17 0.0006 29.7 4.7 37 4-41 2-43 (485)
210 2qzs_A Glycogen synthase; glyc 51.8 17 0.00058 29.8 4.6 38 3-41 1-43 (485)
211 2lci_A Protein OR36; structura 51.7 44 0.0015 21.3 9.8 101 4-142 2-104 (134)
212 3e8x_A Putative NAD-dependent 50.9 68 0.0023 23.2 8.2 68 13-82 27-95 (236)
213 1nbw_B Glycerol dehydratase re 50.8 25 0.00087 23.5 4.4 35 7-42 9-43 (117)
214 3ghy_A Ketopantoate reductase 50.8 79 0.0027 24.7 8.2 81 3-98 4-91 (335)
215 2ozl_B PDHE1-B, pyruvate dehyd 50.6 28 0.00094 27.8 5.5 38 4-45 218-255 (341)
216 1ehi_A LMDDL2, D-alanine:D-lac 50.5 30 0.001 27.8 5.7 40 2-42 3-46 (377)
217 2c4w_A 3-dehydroquinate dehydr 50.4 31 0.0011 24.8 5.1 79 1-97 9-103 (176)
218 3i12_A D-alanine-D-alanine lig 49.4 33 0.0011 27.4 5.8 40 2-42 3-45 (364)
219 2rcy_A Pyrroline carboxylate r 49.4 53 0.0018 24.4 6.8 70 3-97 5-78 (262)
220 3fwz_A Inner membrane protein 49.4 18 0.00062 24.3 3.7 73 2-82 7-82 (140)
221 1nho_A Probable thioredoxin; b 49.4 12 0.00041 22.2 2.6 42 1-42 1-43 (85)
222 2ywd_A Glutamine amidotransfer 49.1 25 0.00085 25.0 4.6 47 1-79 1-47 (191)
223 2wmy_A WZB, putative acid phos 48.7 15 0.0005 25.6 3.2 26 1-29 7-34 (150)
224 3abi_A Putative uncharacterize 48.7 16 0.00054 29.3 3.8 82 3-96 17-100 (365)
225 2lqo_A Putative glutaredoxin R 48.6 25 0.00084 22.2 4.0 37 1-42 1-38 (92)
226 2i76_A Hypothetical protein; N 48.5 9.9 0.00034 29.1 2.5 69 1-83 1-70 (276)
227 2i87_A D-alanine-D-alanine lig 48.0 28 0.00097 27.6 5.2 40 2-42 3-45 (364)
228 2jjm_A Glycosyl transferase, g 47.9 23 0.0008 28.0 4.7 40 1-41 14-53 (394)
229 3ic4_A Glutaredoxin (GRX-1); s 47.6 21 0.00071 21.8 3.6 36 1-42 10-46 (92)
230 1umd_B E1-beta, 2-OXO acid deh 47.0 24 0.00081 27.8 4.5 69 13-96 210-279 (324)
231 3k3p_A D-alanine--D-alanine li 47.0 35 0.0012 27.6 5.7 39 3-42 38-79 (383)
232 3ego_A Probable 2-dehydropanto 46.6 67 0.0023 24.8 7.1 24 68-97 64-87 (307)
233 2cvz_A Dehydrogenase, 3-hydrox 46.6 90 0.0031 23.4 10.3 63 67-145 51-114 (289)
234 3ia7_A CALG4; glycosysltransfe 46.5 18 0.00063 28.6 3.9 38 1-40 2-40 (402)
235 1uqr_A 3-dehydroquinate dehydr 46.5 41 0.0014 23.6 5.1 78 3-97 2-92 (154)
236 2klx_A Glutaredoxin; thioredox 46.5 27 0.00091 21.2 3.9 35 1-41 4-39 (89)
237 2o5a_A BH1328 protein; BHR21, 45.9 36 0.0012 23.0 4.7 54 16-98 3-56 (125)
238 3obb_A Probable 3-hydroxyisobu 45.8 1E+02 0.0035 23.8 10.7 121 3-148 4-124 (300)
239 3q98_A Transcarbamylase; rossm 45.7 1.2E+02 0.0042 24.7 9.2 38 106-143 189-226 (399)
240 1ego_A Glutaredoxin; electron 45.0 35 0.0012 20.1 4.3 39 4-42 2-40 (85)
241 3oy2_A Glycosyltransferase B73 44.3 46 0.0016 26.4 6.0 38 3-42 1-40 (413)
242 4fzr_A SSFS6; structural genom 44.0 13 0.00043 29.7 2.6 36 3-40 16-51 (398)
243 3ohs_X Trans-1,2-dihydrobenzen 43.4 65 0.0022 25.1 6.6 72 1-83 1-78 (334)
244 1ks9_A KPA reductase;, 2-dehyd 43.2 1E+02 0.0035 23.0 9.0 81 4-98 2-84 (291)
245 3lzd_A DPH2; diphthamide biosy 43.1 43 0.0015 27.3 5.5 41 3-44 265-306 (378)
246 1z82_A Glycerol-3-phosphate de 42.6 25 0.00086 27.6 4.1 83 1-97 13-100 (335)
247 3ged_A Short-chain dehydrogena 42.2 32 0.0011 26.1 4.4 36 1-42 1-36 (247)
248 1u6t_A SH3 domain-binding glut 41.6 50 0.0017 22.1 4.8 37 5-42 1-40 (121)
249 1uqw_A Putative binding protei 41.6 67 0.0023 26.8 6.8 36 5-41 346-381 (509)
250 3p9z_A Uroporphyrinogen III co 41.5 22 0.00075 26.4 3.4 21 70-97 160-180 (229)
251 3lvu_A ABC transporter, peripl 41.4 28 0.00094 26.0 4.0 36 5-41 130-165 (258)
252 3egc_A Putative ribose operon 41.2 91 0.0031 23.2 7.0 38 4-42 10-48 (291)
253 3hgm_A Universal stress protei 41.2 34 0.0011 22.6 4.1 40 1-42 1-40 (147)
254 3ezy_A Dehydrogenase; structur 41.0 36 0.0012 26.7 4.8 70 1-83 1-76 (344)
255 1q77_A Hypothetical protein AQ 40.7 45 0.0015 21.8 4.7 38 1-41 3-41 (138)
256 2c92_A 6,7-dimethyl-8-ribityll 40.6 32 0.0011 24.4 3.9 39 4-43 19-59 (160)
257 3jy6_A Transcriptional regulat 40.5 1.1E+02 0.0037 22.6 8.6 38 4-42 9-47 (276)
258 3lfh_A Manxa, phosphotransfera 40.4 86 0.003 21.4 6.9 28 66-93 54-82 (144)
259 3e5n_A D-alanine-D-alanine lig 40.4 54 0.0019 26.4 5.8 39 3-42 23-64 (386)
260 4hkt_A Inositol 2-dehydrogenas 40.3 31 0.0011 26.9 4.3 13 71-83 63-75 (331)
261 3rsc_A CALG2; TDP, enediyne, s 39.8 16 0.00056 29.2 2.6 37 2-40 20-56 (415)
262 1oth_A Protein (ornithine tran 39.7 1.4E+02 0.0047 23.6 8.2 59 78-143 123-183 (321)
263 1txg_A Glycerol-3-phosphate de 39.5 58 0.002 25.2 5.7 24 68-97 68-91 (335)
264 2f1k_A Prephenate dehydrogenas 39.5 1.2E+02 0.004 22.7 7.7 77 4-98 2-78 (279)
265 3mos_A Transketolase, TK; thia 39.4 55 0.0019 28.4 5.9 74 5-96 501-576 (616)
266 2fb6_A Conserved hypothetical 39.4 34 0.0012 22.6 3.7 39 3-42 8-49 (117)
267 1jmv_A USPA, universal stress 38.8 63 0.0022 21.1 5.2 38 1-41 1-39 (141)
268 4hcj_A THIJ/PFPI domain protei 38.8 34 0.0012 24.4 3.9 97 4-116 9-109 (177)
269 2d1p_B TUSC, hypothetical UPF0 38.8 51 0.0018 21.6 4.6 39 3-42 2-42 (119)
270 2wja_A Putative acid phosphata 38.6 19 0.00064 25.7 2.4 26 1-29 25-52 (168)
271 3tqt_A D-alanine--D-alanine li 38.6 61 0.0021 26.0 5.8 38 4-42 6-46 (372)
272 1jvn_A Glutamine, bifunctional 38.5 58 0.002 27.8 5.9 49 3-80 5-53 (555)
273 2ct6_A SH3 domain-binding glut 38.1 78 0.0027 20.3 5.5 37 4-42 9-48 (111)
274 1a9x_B Carbamoyl phosphate syn 37.8 1.6E+02 0.0055 23.8 8.5 30 4-41 192-221 (379)
275 3exr_A RMPD (hexulose-6-phosph 37.8 20 0.00069 26.6 2.6 32 70-101 188-220 (221)
276 3se7_A VANA; alpha-beta struct 37.8 61 0.0021 25.4 5.7 39 3-42 4-45 (346)
277 4got_A Methionine-binding lipo 37.5 61 0.0021 24.7 5.3 38 4-43 6-43 (249)
278 3rh0_A Arsenate reductase; oxi 37.5 40 0.0014 23.4 4.0 75 2-81 20-102 (148)
279 2bfd_B 2-oxoisovalerate dehydr 37.4 39 0.0013 26.9 4.4 69 13-96 227-297 (342)
280 3fz4_A Putative arsenate reduc 37.2 79 0.0027 20.8 5.4 34 6-43 5-38 (120)
281 3n8k_A 3-dehydroquinate dehydr 36.9 47 0.0016 23.7 4.2 77 3-96 29-118 (172)
282 2iyf_A OLED, oleandomycin glyc 36.7 18 0.00062 29.1 2.4 37 3-41 8-44 (430)
283 3dtt_A NADP oxidoreductase; st 36.4 36 0.0012 25.4 3.9 33 2-41 19-51 (245)
284 3d1l_A Putative NADP oxidoredu 36.4 73 0.0025 23.7 5.7 25 67-97 64-88 (266)
285 1t2a_A GDP-mannose 4,6 dehydra 36.3 27 0.00091 27.6 3.3 35 1-41 23-57 (375)
286 2an1_A Putative kinase; struct 36.3 28 0.00095 26.8 3.3 35 3-38 6-40 (292)
287 3ay3_A NAD-dependent epimerase 36.2 11 0.00036 28.4 0.8 34 1-40 1-34 (267)
288 3uow_A GMP synthetase; structu 36.0 73 0.0025 27.2 6.1 33 3-41 8-40 (556)
289 2h2w_A Homoserine O-succinyltr 35.9 1.3E+02 0.0046 23.6 7.2 86 3-98 48-144 (312)
290 3gkx_A Putative ARSC family re 35.8 70 0.0024 21.1 4.9 34 6-43 6-39 (120)
291 2g2q_A Glutaredoxin-2; thiored 35.5 77 0.0026 21.2 4.8 35 2-41 1-36 (124)
292 1ek6_A UDP-galactose 4-epimera 35.3 28 0.00097 27.0 3.3 34 1-40 1-34 (348)
293 2iz1_A 6-phosphogluconate dehy 35.2 1.9E+02 0.0065 23.9 9.2 80 3-98 6-90 (474)
294 2z04_A Phosphoribosylaminoimid 35.2 42 0.0014 26.5 4.3 33 3-42 2-34 (365)
295 3rg8_A Phosphoribosylaminoimid 35.0 53 0.0018 23.2 4.2 33 1-36 1-33 (159)
296 3g1w_A Sugar ABC transporter; 34.9 1.4E+02 0.0048 22.2 8.3 35 4-39 6-41 (305)
297 3l6u_A ABC-type sugar transpor 34.8 1.4E+02 0.0047 22.1 7.6 38 4-42 10-48 (293)
298 2vns_A Metalloreductase steap3 34.4 16 0.00054 26.8 1.5 65 3-82 29-94 (215)
299 3bed_A PTS system, IIA compone 34.4 94 0.0032 21.0 5.5 74 1-89 4-78 (142)
300 1gsa_A Glutathione synthetase; 34.2 18 0.00063 27.6 2.0 40 1-42 1-42 (316)
301 1sy7_A Catalase 1; heme oxidat 34.2 67 0.0023 28.5 5.7 97 3-116 535-636 (715)
302 3p2o_A Bifunctional protein fo 34.2 34 0.0012 26.7 3.4 52 3-80 161-212 (285)
303 3lft_A Uncharacterized protein 34.0 43 0.0015 25.4 4.1 38 3-41 134-171 (295)
304 3sc6_A DTDP-4-dehydrorhamnose 34.0 24 0.00082 26.6 2.6 34 1-40 4-37 (287)
305 3c5y_A Ribose/galactose isomer 34.0 35 0.0012 25.7 3.3 36 3-41 20-56 (231)
306 2iss_D Glutamine amidotransfer 33.9 83 0.0028 22.7 5.5 30 3-39 21-50 (208)
307 2a33_A Hypothetical protein; s 33.9 35 0.0012 25.3 3.4 31 3-34 14-47 (215)
308 3s2u_A UDP-N-acetylglucosamine 33.9 35 0.0012 27.1 3.6 36 1-39 1-37 (365)
309 3ouz_A Biotin carboxylase; str 33.7 26 0.00088 28.8 2.9 33 1-40 5-37 (446)
310 4ffl_A PYLC; amino acid, biosy 33.6 37 0.0013 26.8 3.7 34 2-42 1-34 (363)
311 3okp_A GDP-mannose-dependent a 33.6 41 0.0014 26.2 4.0 38 2-42 4-44 (394)
312 2ywj_A Glutamine amidotransfer 33.5 60 0.0021 22.8 4.6 29 4-39 2-30 (186)
313 3r75_A Anthranilate/para-amino 33.4 2.4E+02 0.0083 24.6 9.5 50 4-82 448-498 (645)
314 2z08_A Universal stress protei 33.3 56 0.0019 21.3 4.2 40 1-42 1-40 (137)
315 3dhn_A NAD-dependent epimerase 33.1 37 0.0013 24.4 3.5 72 3-82 5-78 (227)
316 3tsa_A SPNG, NDP-rhamnosyltran 33.1 25 0.00085 27.8 2.6 36 3-40 2-37 (391)
317 3h4t_A Glycosyltransferase GTF 33.0 39 0.0013 27.1 3.8 36 4-41 2-37 (404)
318 4amu_A Ornithine carbamoyltran 32.9 1.8E+02 0.0061 23.5 7.6 59 79-143 149-209 (365)
319 2qh8_A Uncharacterized protein 32.9 47 0.0016 25.2 4.2 37 3-40 141-177 (302)
320 2hy5_A Putative sulfurtransfer 32.8 1.1E+02 0.0037 20.2 5.6 38 4-42 2-42 (130)
321 2ydy_A Methionine adenosyltran 32.7 30 0.001 26.4 3.0 33 1-39 1-33 (315)
322 3pam_A Transmembrane protein; 32.7 67 0.0023 23.8 4.9 28 13-41 137-164 (259)
323 3rft_A Uronate dehydrogenase; 32.4 36 0.0012 25.5 3.4 37 1-42 1-37 (267)
324 1hdo_A Biliverdin IX beta redu 32.3 41 0.0014 23.6 3.5 35 1-41 1-36 (206)
325 1f35_A Olfactory marker protei 32.3 31 0.001 23.6 2.5 17 183-199 118-134 (162)
326 4ekn_B Aspartate carbamoyltran 32.3 1.8E+02 0.0062 22.7 7.5 60 79-143 119-182 (306)
327 3eeq_A Putative cobalamin bios 32.3 54 0.0018 26.2 4.4 54 4-81 10-64 (336)
328 3oow_A Phosphoribosylaminoimid 32.1 59 0.002 23.1 4.1 34 1-37 4-37 (166)
329 3l6e_A Oxidoreductase, short-c 31.9 37 0.0013 25.0 3.3 36 1-41 1-36 (235)
330 3tqi_A GMP synthase [glutamine 31.7 1.2E+02 0.0041 25.7 6.7 32 3-40 11-42 (527)
331 2i2c_A Probable inorganic poly 31.6 53 0.0018 25.1 4.2 30 4-35 2-31 (272)
332 3ec2_A DNA replication protein 31.5 1E+02 0.0035 21.2 5.5 74 4-87 39-116 (180)
333 3t66_A Nickel ABC transporter 31.4 79 0.0027 26.2 5.6 36 5-41 332-367 (496)
334 3h75_A Periplasmic sugar-bindi 31.4 1.8E+02 0.006 22.3 8.5 37 4-41 5-43 (350)
335 2l69_A Rossmann 2X3 fold prote 31.3 1E+02 0.0035 19.6 7.7 104 4-143 2-105 (134)
336 3u80_A 3-dehydroquinate dehydr 31.1 97 0.0033 21.6 5.0 75 3-94 5-92 (151)
337 2orv_A Thymidine kinase; TP4A 31.0 1E+02 0.0036 23.1 5.6 101 2-116 18-124 (234)
338 3l07_A Bifunctional protein fo 31.0 42 0.0014 26.2 3.5 52 3-80 162-213 (285)
339 2w70_A Biotin carboxylase; lig 31.0 32 0.0011 28.1 3.0 33 1-40 1-33 (449)
340 1g63_A Epidermin modifying enz 30.8 56 0.0019 23.5 3.9 137 1-145 1-143 (181)
341 2iya_A OLEI, oleandomycin glyc 30.8 45 0.0015 26.7 3.9 37 3-41 13-49 (424)
342 2d1p_A TUSD, hypothetical UPF0 30.8 1.2E+02 0.0043 20.5 5.6 39 3-42 13-54 (140)
343 4a26_A Putative C-1-tetrahydro 30.6 33 0.0011 26.9 2.9 52 3-80 166-219 (300)
344 3rqt_A Putative uncharacterize 30.5 85 0.0029 26.0 5.6 36 5-41 330-365 (486)
345 3flk_A Tartrate dehydrogenase/ 30.4 1.9E+02 0.0064 23.3 7.3 22 61-82 59-83 (364)
346 1b0a_A Protein (fold bifunctio 30.3 41 0.0014 26.3 3.3 51 4-81 161-212 (288)
347 3h5l_A Putative branched-chain 30.3 2E+02 0.0069 22.7 9.5 34 3-38 165-198 (419)
348 2fb9_A D-alanine:D-alanine lig 30.2 87 0.003 24.3 5.4 37 2-42 3-42 (322)
349 3rss_A Putative uncharacterize 30.2 2.5E+02 0.0084 23.6 10.5 90 3-98 53-149 (502)
350 1np3_A Ketol-acid reductoisome 30.1 62 0.0021 25.5 4.5 75 4-97 18-93 (338)
351 2yq5_A D-isomer specific 2-hyd 29.9 1.2E+02 0.0042 24.0 6.2 15 65-79 39-53 (343)
352 2gf9_A RAS-related protein RAB 29.7 1.4E+02 0.0046 20.5 8.5 47 66-116 89-135 (189)
353 1n7h_A GDP-D-mannose-4,6-dehyd 29.6 40 0.0014 26.6 3.3 35 1-41 27-61 (381)
354 2gf2_A Hibadh, 3-hydroxyisobut 29.6 47 0.0016 25.2 3.7 76 4-97 2-77 (296)
355 3gv0_A Transcriptional regulat 29.6 87 0.003 23.3 5.2 37 4-41 10-49 (288)
356 3ry3_A Putative solute-binding 29.6 81 0.0028 26.4 5.4 35 5-40 362-396 (528)
357 2p6p_A Glycosyl transferase; X 29.5 45 0.0015 26.2 3.6 36 4-41 2-37 (384)
358 3db2_A Putative NADPH-dependen 29.5 1.2E+02 0.0041 23.7 6.2 14 70-83 65-78 (354)
359 3qyf_A Crispr-associated prote 29.4 76 0.0026 25.2 4.7 36 6-42 95-130 (324)
360 2hy5_B Intracellular sulfur ox 29.4 1.1E+02 0.0038 20.6 5.2 40 2-42 5-46 (136)
361 3otg_A CALG1; calicheamicin, T 29.4 30 0.001 27.5 2.5 37 3-41 21-57 (412)
362 4fu0_A D-alanine--D-alanine li 29.3 1.1E+02 0.0036 24.2 5.8 40 1-41 1-44 (357)
363 2dum_A Hypothetical protein PH 29.2 84 0.0029 21.3 4.7 39 2-42 5-43 (170)
364 2qpq_A Protein BUG27; alpha/be 29.1 52 0.0018 25.6 3.8 34 7-40 13-46 (301)
365 2l17_A Synarsc, arsenate reduc 29.0 56 0.0019 22.0 3.6 25 2-29 4-30 (134)
366 3lwb_A D-alanine--D-alanine li 29.0 93 0.0032 24.8 5.4 40 2-42 10-52 (373)
367 1bg6_A N-(1-D-carboxylethyl)-L 28.9 56 0.0019 25.5 4.0 24 68-97 72-95 (359)
368 3cs3_A Sugar-binding transcrip 28.8 1.7E+02 0.0059 21.4 8.4 37 4-41 10-47 (277)
369 3ngx_A Bifunctional protein fo 28.8 43 0.0015 26.0 3.2 52 3-80 151-202 (276)
370 3vps_A TUNA, NAD-dependent epi 28.8 34 0.0012 26.0 2.7 34 2-41 7-40 (321)
371 2orw_A Thymidine kinase; TMTK, 28.8 1.3E+02 0.0044 21.2 5.7 36 1-38 1-37 (184)
372 3t1o_A Gliding protein MGLA; G 28.5 1.4E+02 0.0048 20.3 7.4 46 66-116 92-143 (198)
373 3pdi_A Nitrogenase MOFE cofact 28.5 1.6E+02 0.0054 24.6 6.9 36 104-147 328-363 (483)
374 4adb_A Succinylornithine trans 28.4 1.9E+02 0.0063 22.6 7.2 67 72-143 128-221 (406)
375 1ml4_A Aspartate transcarbamoy 28.4 1.6E+02 0.0056 23.0 6.6 61 78-143 122-185 (308)
376 3en0_A Cyanophycinase; serine 28.4 51 0.0017 25.7 3.6 14 66-79 105-118 (291)
377 3q9l_A Septum site-determining 28.3 1.1E+02 0.0036 22.4 5.4 39 1-42 1-41 (260)
378 3tw8_B RAS-related protein RAB 28.1 1.4E+02 0.0047 20.0 6.2 47 65-116 75-121 (181)
379 1a4i_A Methylenetetrahydrofola 28.1 90 0.0031 24.5 4.9 53 3-81 166-218 (301)
380 1kht_A Adenylate kinase; phosp 27.9 61 0.0021 22.4 3.8 40 1-42 1-41 (192)
381 1i1q_B Anthranilate synthase c 27.9 59 0.002 23.1 3.7 32 4-41 2-33 (192)
382 2hk9_A Shikimate dehydrogenase 27.8 1.2E+02 0.0042 22.8 5.8 69 4-84 131-199 (275)
383 1mjh_A Protein (ATP-binding do 27.8 86 0.0029 21.0 4.5 40 1-42 4-43 (162)
384 3er6_A Putative transcriptiona 27.7 47 0.0016 24.2 3.2 44 66-116 69-116 (209)
385 3dah_A Ribose-phosphate pyroph 27.7 68 0.0023 25.3 4.3 59 2-80 5-63 (319)
386 2yjn_A ERYCIII, glycosyltransf 27.6 30 0.001 28.0 2.3 37 3-41 21-57 (441)
387 3s5j_B Ribose-phosphate pyroph 27.5 77 0.0026 25.1 4.5 56 4-79 3-58 (326)
388 2f5x_A BUGD; periplasmic bindi 27.5 49 0.0017 25.9 3.4 36 6-41 21-56 (312)
389 3rdw_A Putative arsenate reduc 27.3 72 0.0025 21.0 3.8 34 6-43 7-40 (121)
390 3u1h_A 3-isopropylmalate dehyd 27.2 1.1E+02 0.0038 24.9 5.5 71 1-82 22-100 (390)
391 2bon_A Lipid kinase; DAG kinas 27.2 70 0.0024 25.1 4.3 38 2-41 29-66 (332)
392 1hyq_A MIND, cell division inh 26.9 1.1E+02 0.0037 22.5 5.3 39 1-42 1-41 (263)
393 1i36_A Conserved hypothetical 26.9 1.2E+02 0.0039 22.5 5.4 65 4-83 2-68 (264)
394 1g3q_A MIND ATPase, cell divis 26.8 1.3E+02 0.0043 21.7 5.5 39 1-42 1-41 (237)
395 3qjg_A Epidermin biosynthesis 26.8 80 0.0027 22.5 4.2 134 1-145 4-146 (175)
396 3gra_A Transcriptional regulat 26.8 43 0.0015 24.2 2.8 40 69-116 69-109 (202)
397 2dvz_A BUGE, putative exported 26.7 52 0.0018 25.8 3.4 36 6-41 23-58 (314)
398 2vdj_A Homoserine O-succinyltr 26.7 1.3E+02 0.0043 23.6 5.6 84 3-97 36-131 (301)
399 1ulz_A Pyruvate carboxylase N- 26.6 36 0.0012 27.8 2.6 33 1-40 1-33 (451)
400 1xgk_A Nitrogen metabolite rep 26.4 1.6E+02 0.0054 23.1 6.3 82 14-97 12-99 (352)
401 4b4o_A Epimerase family protei 26.2 50 0.0017 25.0 3.2 30 4-39 2-31 (298)
402 3s3t_A Nucleotide-binding prot 26.1 1E+02 0.0035 20.1 4.5 40 1-42 4-43 (146)
403 3o74_A Fructose transport syst 25.9 1.4E+02 0.0049 21.6 5.8 39 3-42 3-42 (272)
404 1vg8_A RAS-related protein RAB 25.9 1.7E+02 0.0057 20.3 7.4 51 66-116 75-125 (207)
405 3cwc_A Putative glycerate kina 25.9 62 0.0021 26.4 3.8 40 3-42 4-46 (383)
406 3kke_A LACI family transcripti 25.8 1.7E+02 0.0059 21.8 6.3 38 4-42 17-55 (303)
407 3cpt_A Mitogen-activated prote 25.7 46 0.0016 23.1 2.5 18 81-98 15-32 (143)
408 3pnx_A Putative sulfurtransfer 25.7 1.2E+02 0.0041 21.2 4.9 39 3-42 5-43 (160)
409 3ax6_A Phosphoribosylaminoimid 25.7 1E+02 0.0034 24.4 5.1 33 3-42 2-34 (380)
410 1orr_A CDP-tyvelose-2-epimeras 25.6 51 0.0018 25.4 3.3 33 1-40 1-33 (347)
411 3bos_A Putative DNA replicatio 25.6 1.8E+02 0.0061 20.6 6.4 37 4-42 53-90 (242)
412 2i0f_A 6,7-dimethyl-8-ribityll 25.4 1.6E+02 0.0053 20.7 5.4 40 3-43 13-53 (157)
413 2c20_A UDP-glucose 4-epimerase 25.4 53 0.0018 25.2 3.3 33 1-40 1-33 (330)
414 2grv_A LPQW; substrate-binding 25.4 1E+02 0.0034 26.6 5.3 36 5-41 412-447 (621)
415 2duw_A Putative COA-binding pr 25.3 1.4E+02 0.0047 20.2 5.1 56 70-146 69-124 (145)
416 4amg_A Snogd; transferase, pol 25.3 37 0.0013 26.8 2.4 36 3-40 23-58 (400)
417 2kok_A Arsenate reductase; bru 25.2 1.1E+02 0.0039 19.8 4.5 32 6-42 7-39 (120)
418 2b6h_A ADP-ribosylation factor 25.1 1.7E+02 0.0059 20.2 6.6 48 66-116 91-138 (192)
419 2b99_A Riboflavin synthase; lu 25.1 38 0.0013 23.9 2.1 39 1-42 1-41 (156)
420 3tnj_A Universal stress protei 24.9 1.3E+02 0.0044 19.7 4.9 39 2-42 6-44 (150)
421 1ccw_A Protein (glutamate muta 24.8 1.4E+02 0.005 19.9 5.1 27 70-98 53-79 (137)
422 2yv1_A Succinyl-COA ligase [AD 24.7 2.4E+02 0.0082 21.7 7.9 59 71-146 70-128 (294)
423 3orf_A Dihydropteridine reduct 24.7 67 0.0023 23.7 3.6 36 1-42 21-56 (251)
424 4bas_A ADP-ribosylation factor 24.7 1.7E+02 0.0058 20.0 6.4 51 66-116 81-135 (199)
425 2noo_A NIKA, nickel-binding pe 24.2 1.2E+02 0.004 25.1 5.4 36 5-41 342-377 (502)
426 2w7t_A CTP synthetase, putativ 24.2 45 0.0015 25.5 2.6 59 4-79 10-75 (273)
427 4fle_A Esterase; structural ge 24.1 76 0.0026 22.0 3.7 10 1-10 1-10 (202)
428 2yy7_A L-threonine dehydrogena 24.1 37 0.0013 25.7 2.1 35 1-41 1-37 (312)
429 4etm_A LMPTP, low molecular we 24.0 54 0.0018 23.3 2.8 23 2-27 18-42 (173)
430 2dzd_A Pyruvate carboxylase; b 24.0 36 0.0012 27.9 2.1 34 1-41 5-38 (461)
431 1f0y_A HCDH, L-3-hydroxyacyl-C 23.9 1.1E+02 0.0036 23.5 4.7 33 3-42 16-48 (302)
432 3ktd_A Prephenate dehydrogenas 23.7 1.1E+02 0.0039 24.2 4.9 78 2-98 8-89 (341)
433 1cfz_A Hydrogenase 2 maturatio 23.7 1.9E+02 0.0064 20.1 6.3 68 4-91 2-75 (162)
434 1xoc_A Oligopeptide-binding pr 23.6 1.2E+02 0.0042 25.2 5.4 36 5-41 362-397 (520)
435 2r6j_A Eugenol synthase 1; phe 23.5 38 0.0013 25.9 2.1 30 66-98 74-103 (318)
436 3ic5_A Putative saccharopine d 23.5 98 0.0033 19.2 3.9 34 1-41 4-38 (118)
437 3uug_A Multiple sugar-binding 23.3 2.4E+02 0.0082 21.2 8.4 37 4-41 5-42 (330)
438 3e61_A Putative transcriptiona 23.2 1.4E+02 0.0048 21.9 5.2 38 4-42 10-48 (277)
439 3ipr_A PTS system, IIA compone 23.1 1.8E+02 0.0063 19.8 6.8 79 3-95 2-81 (150)
440 2yjz_A Metalloreductase steap4 28.8 17 0.0006 26.4 0.0 16 67-82 69-84 (201)
441 1z0s_A Probable inorganic poly 23.0 2E+02 0.007 22.1 6.1 28 4-37 31-58 (278)
442 1tuw_A Tetracenomycin polyketi 23.0 90 0.0031 20.5 3.4 26 1-26 1-26 (109)
443 3oh8_A Nucleoside-diphosphate 23.0 1E+02 0.0035 25.7 4.8 63 3-80 148-210 (516)
444 2h57_A ADP-ribosylation factor 22.9 1.9E+02 0.0063 19.8 8.2 48 66-116 85-134 (190)
445 3q3j_B RHO-related GTP-binding 22.9 2.1E+02 0.007 20.3 7.3 46 66-116 93-139 (214)
446 3k5i_A Phosphoribosyl-aminoimi 22.9 1E+02 0.0034 24.9 4.6 33 2-42 24-56 (403)
447 2gcg_A Glyoxylate reductase/hy 22.9 1.9E+02 0.0065 22.6 6.1 55 19-82 166-221 (330)
448 1weh_A Conserved hypothetical 22.8 96 0.0033 21.9 3.9 29 4-33 3-34 (171)
449 1yqg_A Pyrroline-5-carboxylate 22.7 74 0.0025 23.6 3.5 75 4-97 2-77 (263)
450 1gtd_A MTH169; synthetase, FGA 22.5 64 0.0022 19.9 2.6 35 1-36 1-35 (85)
451 3qk7_A Transcriptional regulat 22.5 2.4E+02 0.0082 20.9 7.8 38 4-42 8-50 (294)
452 2is8_A Molybdopterin biosynthe 22.5 1.3E+02 0.0044 20.9 4.6 33 3-40 2-42 (164)
453 3l0i_B RAS-related protein RAB 22.4 1.9E+02 0.0065 19.9 5.6 47 66-116 100-146 (199)
454 1ooe_A Dihydropteridine reduct 22.4 83 0.0029 22.8 3.7 36 1-41 1-36 (236)
455 3gyb_A Transcriptional regulat 22.4 2.3E+02 0.0079 20.6 6.6 37 4-41 7-44 (280)
456 4aoy_A Isocitrate dehydrogenas 22.3 56 0.0019 26.8 2.9 84 1-96 6-105 (402)
457 2vxo_A GMP synthase [glutamine 22.3 1.3E+02 0.0044 26.6 5.3 31 4-41 31-62 (697)
458 1nks_A Adenylate kinase; therm 22.2 1.6E+02 0.0056 20.0 5.2 35 4-40 2-37 (194)
459 3e48_A Putative nucleoside-dip 22.1 2.4E+02 0.0083 20.8 8.9 127 4-143 2-136 (289)
460 1oi7_A Succinyl-COA synthetase 22.0 2.7E+02 0.0092 21.3 7.5 58 71-145 64-121 (288)
461 1p2f_A Response regulator; DRR 21.9 69 0.0024 22.8 3.1 26 1-32 1-26 (220)
462 3tfo_A Putative 3-oxoacyl-(acy 21.9 93 0.0032 23.4 4.0 35 2-41 3-37 (264)
463 2wol_A ORF15, clavulanic acid 21.8 3.1E+02 0.011 22.8 7.6 23 18-41 404-426 (562)
464 1via_A Shikimate kinase; struc 21.8 74 0.0025 21.8 3.2 27 1-28 3-29 (175)
465 2oil_A CATX-8, RAS-related pro 21.8 2E+02 0.0067 19.6 5.6 47 66-116 92-138 (193)
466 3g17_A Similar to 2-dehydropan 21.7 68 0.0023 24.5 3.2 72 1-82 1-73 (294)
467 2fu5_C RAS-related protein RAB 21.7 1.9E+02 0.0065 19.4 5.9 47 66-116 75-121 (183)
468 1v4v_A UDP-N-acetylglucosamine 21.7 69 0.0024 24.9 3.3 37 2-41 5-42 (376)
469 1oc2_A DTDP-glucose 4,6-dehydr 21.6 56 0.0019 25.2 2.7 32 3-40 5-38 (348)
470 3clk_A Transcription regulator 21.6 2.4E+02 0.0083 20.7 6.4 36 4-40 10-47 (290)
471 1ky3_A GTP-binding protein YPT 21.6 1.2E+02 0.0041 20.3 4.3 51 66-116 76-126 (182)
472 3mz0_A Inositol 2-dehydrogenas 21.4 2.1E+02 0.0072 22.2 6.1 13 71-83 66-78 (344)
473 1qhx_A CPT, protein (chloramph 21.3 95 0.0033 21.2 3.7 28 1-29 1-29 (178)
474 3l49_A ABC sugar (ribose) tran 21.3 2.5E+02 0.0084 20.6 8.5 38 4-42 7-45 (291)
475 1ydh_A AT5G11950; structural g 21.2 84 0.0029 23.2 3.5 30 4-34 11-43 (216)
476 1q7r_A Predicted amidotransfer 21.2 1.3E+02 0.0045 21.8 4.6 11 68-78 57-67 (219)
477 3slg_A PBGP3 protein; structur 21.2 54 0.0019 25.7 2.6 35 2-42 24-59 (372)
478 1gpu_A Transketolase; transfer 21.1 1.3E+02 0.0044 26.4 5.1 36 4-43 556-591 (680)
479 2x5n_A SPRPN10, 26S proteasome 21.1 1.4E+02 0.0049 21.3 4.7 19 22-41 126-144 (192)
480 3m9w_A D-xylose-binding peripl 21.1 2E+02 0.0069 21.5 5.9 37 4-41 4-41 (313)
481 2w37_A Ornithine carbamoyltran 21.1 3.2E+02 0.011 21.9 8.1 59 79-143 145-205 (359)
482 1x92_A APC5045, phosphoheptose 20.9 1E+02 0.0036 21.7 3.9 32 5-38 115-146 (199)
483 3rot_A ABC sugar transporter, 20.9 2.6E+02 0.0089 20.7 7.3 37 4-41 5-42 (297)
484 2bcg_Y Protein YP2, GTP-bindin 20.8 2.2E+02 0.0074 19.7 9.0 48 65-116 74-121 (206)
485 3f0i_A Arsenate reductase; str 20.7 1E+02 0.0034 20.2 3.5 33 6-42 6-38 (119)
486 2a5j_A RAS-related protein RAB 20.5 2.1E+02 0.007 19.6 5.4 48 65-116 87-134 (191)
487 1dxh_A Ornithine carbamoyltran 20.5 3.2E+02 0.011 21.6 7.4 59 79-143 123-184 (335)
488 1ejb_A Lumazine synthase; anal 20.4 88 0.003 22.3 3.2 39 4-43 18-60 (168)
489 3d8t_A Uroporphyrinogen-III sy 20.4 86 0.0029 23.9 3.5 56 22-97 170-227 (286)
490 3l78_A Regulatory protein SPX; 20.4 1.9E+02 0.0064 18.8 5.7 33 6-42 2-34 (120)
491 1vp8_A Hypothetical protein AF 20.3 84 0.0029 23.1 3.1 27 7-34 17-45 (201)
492 2x4g_A Nucleoside-diphosphate- 20.3 84 0.0029 24.0 3.5 33 3-41 14-46 (342)
493 2yfk_A Aspartate/ornithine car 20.2 3.6E+02 0.012 22.1 9.7 38 106-143 186-223 (418)
494 3m49_A Transketolase; alpha-be 20.2 1.3E+02 0.0046 26.4 5.0 36 4-43 578-613 (690)
495 3us8_A Isocitrate dehydrogenas 20.1 63 0.0022 26.7 2.8 67 4-82 32-103 (427)
496 1xx6_A Thymidine kinase; NESG, 20.1 2E+02 0.0069 20.5 5.3 34 4-39 9-43 (191)
497 3jvd_A Transcriptional regulat 20.1 2E+02 0.0067 22.0 5.6 38 4-42 66-104 (333)
No 1
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=100.00 E-value=5.4e-35 Score=222.82 Aligned_cols=195 Identities=37% Similarity=0.558 Sum_probs=145.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
|+||+|||+|++|||+++|+.+++++++ .|++++++++.+. +..|..+..|. +++..+....+++.+||+|||+||+
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~l~~aD~ii~gsP~ 81 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQ-GGFEARVRTVPAV-STECEAVAPDI-PAEGALYATLEDLKNCAGLALGSPT 81 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEBCCCE-EC--------------CCBCCHHHHHTCSEEEEEEEC
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhh-CCCEEEEEEhhhc-cchhhhhcccc-ccccCchhhHHHHHHCCEEEEEcCh
Confidence 3499999999999999999999999998 8999999999886 33344444454 2121222347889999999999999
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028917 82 RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKG 161 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~ 161 (202)
||+++|+.+|+|||++...|....++||++++|+++|+..++.+.++..+...+..+|+.+++..+.. +.. ......
T Consensus 82 y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~--~~~~~~ 158 (200)
T 2a5l_A 82 RFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSE-PAL--LETRGG 158 (200)
T ss_dssp BTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCCCC--------------
T ss_pred hccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCC-ccc--cccccC
Confidence 99999999999999998776556789999999999998766666788999999999999999866531 111 001123
Q ss_pred cccccceeecC-CCCCCCCHHHHHHHHHHhHHHHHHHHHhhC
Q 028917 162 GSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 202 (202)
Q Consensus 162 ~~~~g~~~~~~-~~~~~p~e~~~~~a~~~g~~l~~~~~~~~~ 202 (202)
+.+++.+.+.. +++..|+++++++|+++|++|++.++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~p~~~~~~~a~~~g~~l~~~~~~~~~ 200 (200)
T 2a5l_A 159 GTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS 200 (200)
T ss_dssp -CTTSBCCBCCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcceeeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44566555543 445689999999999999999999998864
No 2
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=100.00 E-value=1.1e-33 Score=215.29 Aligned_cols=196 Identities=48% Similarity=0.797 Sum_probs=153.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHH-hhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVIL-QKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|| ||+|||+|++|||+++|+.+++++++..|++++++++.+..+++.. ....|... + +....+++.+||+|||+|
T Consensus 1 Mm-kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~l~~aD~ii~gs 76 (198)
T 3b6i_A 1 MA-KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQT-A--PVATPQELADYDAIIFGT 76 (198)
T ss_dssp -C-EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCC-S--CBCCGGGGGGCSEEEEEE
T ss_pred CC-eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhccccccc-C--chhhHHHHHHCCEEEEEe
Confidence 55 9999999999999999999999998534889999999987554321 22223311 1 112368899999999999
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
|+||+++|+.+|+|+|++...|....++||++++|+++||. ++.+.++..+...+..+|+.+++.++.. +.....+.+
T Consensus 77 P~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~-g~~~~~l~~l~~~l~~~g~~~v~~~~~~-~~~~~~~~~ 154 (198)
T 3b6i_A 77 PTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTG-GGQEQTITSTWTTLAHHGMVIVPIGYAA-QELFDVSQV 154 (198)
T ss_dssp EEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSS-TTHHHHHHHHHHHHHHTTCEECCCTTCS-GGGGCCSSC
T ss_pred ChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCC-ccHHHHHHHHHHHHHHCCcEEECCCCCc-ccccccccc
Confidence 99999999999999999987665567899999999999986 6677788999999999999999876642 111111123
Q ss_pred cCcccccceeecC-CCCCCCCHHHHHHHHHHhHHHHHHHHHhhC
Q 028917 160 KGGSSYGAGTFAA-DGSRQPTDLELQQAFHQGKYVAEIAKKLKR 202 (202)
Q Consensus 160 ~~~~~~g~~~~~~-~~~~~p~e~~~~~a~~~g~~l~~~~~~~~~ 202 (202)
+++.++|.+.+.+ +++..|+++++++|+++|++|++.++++++
T Consensus 155 ~g~~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~la~~~~~~~~ 198 (198)
T 3b6i_A 155 RGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG 198 (198)
T ss_dssp CCCBTTBCEEECCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcceecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788776654 455689999999999999999999998864
No 3
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.7e-33 Score=211.62 Aligned_cols=192 Identities=35% Similarity=0.625 Sum_probs=147.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhh-cCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQK-MKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
||||+|||+| +|||+++|+.+++++++ .|++++++++.+.+|+ |..+ ..|+.+ ++.+....+++.+||+|||+||
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~~~~-~~~~~~~~~~~-d~~~~~~~~~l~~aD~ii~gsP 79 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEE-AGAEVKIRRVRETLPP-EFQSRIPFDKV-KDIPEVTLDDMRWADGFAIGSP 79 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHH-HSCEEEEEECCCCSCG-GGGTTCCGGGS-TTSCBCCHHHHHHCSEEEEEEE
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHh-CCCEEEEEehhHhCCh-hhhhccCCCcc-cccccccHHHHHhCCEEEEECC
Confidence 4699999999 99999999999999998 8999999999887443 3322 234422 2112113778999999999999
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
+||+++|+.+|+|||++..+|....++||++++|+++|+..++.+.++..+...+..+|+.+++..+.. +.++ ...+
T Consensus 80 ~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~~~~~-~~~~--~~~~ 156 (199)
T 2zki_A 80 TRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPIGYGI-PELF--QTTT 156 (199)
T ss_dssp CBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCCTTCS-THHH--HCSS
T ss_pred ccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCCCcCC-cccc--cccc
Confidence 999999999999999998777656799999999999998656666778899999999999999876542 1100 0012
Q ss_pred CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHhhC
Q 028917 161 GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLKR 202 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~~~ 202 (202)
.+.+|+...+.+. ..|+++++++|+++|++|++.++++++
T Consensus 157 ~~~~~~~~~~~~~--~~~~~~~~~~a~~~g~~l~~~~~~l~~ 196 (199)
T 2zki_A 157 GGGPYGATHLGSK--EELDEMERKIARFQGKRITEVAKAIKC 196 (199)
T ss_dssp SCCSSCCCCBSSC--SSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcceeeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445554332210 168999999999999999999998763
No 4
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=100.00 E-value=2.9e-33 Score=215.21 Aligned_cols=191 Identities=32% Similarity=0.408 Sum_probs=147.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhh-cCCCCC----CCCCCcCChhhhccCCeeE
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQK-MKAPPK----TNDVPVIRPHQLKEADGFL 76 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~l~~ad~ii 76 (202)
||||+|||+|++|||+++|+.|++++++ .|++++++++.+..++ |..+ ..|+.+ ++|++....+++.+||+||
T Consensus 6 mmkilii~~S~~g~T~~la~~i~~~l~~-~g~~v~~~~l~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii 83 (211)
T 1ydg_A 6 PVKLAIVFYSSTGTGYAMAQEAAEAGRA-AGAEVRLLKVRETAPQ-DVIDGQDAWKANIEAMKDVPEATPADLEWAEAIV 83 (211)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEECCCCSCH-HHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEE
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHhc-CCCEEEEEeccccccc-hhhhcccccccccccccchhHHHHHHHHHCCEEE
Confidence 3599999999999999999999999998 8999999999887443 3221 111100 0133223678999999999
Q ss_pred EeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccc
Q 028917 77 FGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEM 156 (202)
Q Consensus 77 ~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~ 156 (202)
||||+||+++|+.+|+|||++...|....++||++++|+++|+..++.+.++..+...+..+|+.+++.++.. +.+
T Consensus 84 ~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~~~~~-~~~--- 159 (211)
T 1ydg_A 84 FSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPPGYTD-EVI--- 159 (211)
T ss_dssp EEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCCTTCS-HHH---
T ss_pred EEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCCCCCC-hhh---
Confidence 9999999999999999999998776656789999999999998766666788999999999999999876531 000
Q ss_pred ccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 157 NEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
..+++.++|...+.+. ..|+++++++|+++|++|++.+++++
T Consensus 160 -~~~~~~~~g~~~~~~~--~~p~~~~~~~a~~~g~~l~~~~~~~~ 201 (211)
T 1ydg_A 160 -FKSGGNPYGASVTANG--QPLLENDRASIRHQVRRQVELTAKLL 201 (211)
T ss_dssp -HHTTCCSSSCEEECCS--SCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCCccceeecCC--CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 0122445555433211 46899999999999999999998875
No 5
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=100.00 E-value=2.6e-32 Score=207.33 Aligned_cols=179 Identities=27% Similarity=0.303 Sum_probs=132.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||+|||+|++|||+++|+.|++++++ . .+++.+. +++++...+++.+||+||||||+|
T Consensus 7 ~kiliiy~S~~GnT~~lA~~ia~~l~~-~-----~~~v~~~---------------~~~~~~~~~~l~~~D~ii~gsP~y 65 (193)
T 3d7n_A 7 SNTVVVYHSGYGHTHRMAEAVAEGAEA-T-----LHAIDAE---------------GNLSEDGWAALDAADAIIFGTPTY 65 (193)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTC-E-----EEECCTT---------------SCCCHHHHHHHHHCSEEEEEEEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHhhh-c-----ceEeeec---------------CCCCHhHHHHHHHCCEEEEEeCcc
Confidence 489999999999999999999999986 3 3455431 123322457899999999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCc--ccccccc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGM--FEMNEVK 160 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~--~~~~~~~ 160 (202)
+|++|+.+|.|+|++...|....++||++++|+++|+..++.+.++.++...+.++||.+++..+..+... ...+..+
T Consensus 66 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g~~~g~~~~~l~~l~~~l~~~G~~~vg~~~~~~~~~~~~~~~~~~ 145 (193)
T 3d7n_A 66 MGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSASLNGDKLNTLQYLVLLAGQHGGLWVSLGIKPSNLKSSVRNDANR 145 (193)
T ss_dssp TTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEECCCC----------------
T ss_pred CCCccHHHHHHHHHhhhhccccccCCCEEEEEEECCCCCCChHHHHHHHHHHHHHCCCEEeCCccCcccccccccccCCC
Confidence 99999999999999987776667999999999999886666678899999999999999998766532100 0001123
Q ss_pred CcccccceeecC-CC-CCCCCHHHHHHHHHHhHHHHHHHHHhhC
Q 028917 161 GGSSYGAGTFAA-DG-SRQPTDLELQQAFHQGKYVAEIAKKLKR 202 (202)
Q Consensus 161 ~~~~~g~~~~~~-~~-~~~p~e~~~~~a~~~g~~l~~~~~~~~~ 202 (202)
.+.++|...+.+ ++ ...|++++++.|+++|++|++.++++++
T Consensus 146 ~g~~~g~~~~~~~~~~~~~~d~~~l~~a~~~G~~la~~~~~l~~ 189 (193)
T 3d7n_A 146 MGSYIAPMAQSDADAAPEEMSVGDLETARLYGARVANVARQHKS 189 (193)
T ss_dssp ---CCSCEEEC-------CCCHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCcceeeEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355577655553 32 1238999999999999999999988753
No 6
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=99.97 E-value=9.9e-30 Score=192.31 Aligned_cols=164 Identities=30% Similarity=0.468 Sum_probs=130.0
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
|+||+|||+|++|||+++|+.|++++++..|++++++++.+. ..+++.+||+||||||+
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~---------------------~~~~l~~aD~ii~gsP~ 62 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA---------------------TKEDVLWADGLAVGSPT 62 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC---------------------CHHHHHHCSEEEEEEEC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC---------------------CHHHHHhCCEEEEEeCc
Confidence 349999999999999999999999998524789999999762 35789999999999999
Q ss_pred cCCcchHHHHHHHHhhhh-hhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 82 RFGVMAAQCKAFFDATYE-LWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~-~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
|+|++|+.+|.|+|++.. .| ..++||++++|+++|+..++...++..+...+..+|+.+++.+...+..+
T Consensus 63 y~g~~~~~lk~fld~~~~~~~--~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~~~~~~~~~~~~------- 133 (188)
T 2ark_A 63 NMGLVSWKMKRFFDDVLGDLW--GEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGVTDYVGKKF------- 133 (188)
T ss_dssp BTTBCCHHHHHHHHHTGGGTT--TSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCEEEEEETTE-------
T ss_pred cCCcCCHHHHHHHHHHhhhhH--HHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEEeCCCccccccc-------
Confidence 999999999999999854 22 36899999999997655666667788898888899999986432111100
Q ss_pred CcccccceeecCCCCCCCC-HHHHHHHHHHhHHHHHHHHHhh
Q 028917 161 GGSSYGAGTFAADGSRQPT-DLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~-e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
...+|... ...|+ ++++++|+++|++|++.+++++
T Consensus 134 -~~~~g~~~-----~~~p~~~~~~~~~~~~g~~la~~~~~~~ 169 (188)
T 2ark_A 134 -TLHYGAVV-----AGEPRSEEEKEACRRLGRRLAEWVAIFV 169 (188)
T ss_dssp -EESSSEEE-----ESSCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -cCCCccee-----ecCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 11223211 14688 9999999999999999998875
No 7
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=99.96 E-value=1.1e-28 Score=182.22 Aligned_cols=143 Identities=19% Similarity=0.233 Sum_probs=119.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||+|+|+|++|||+++|+.|++++.+ .|++++++++.+..+. ....++.+||+||||||||+
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~~~~-----------------~~~~~~~~~d~ii~Gspty~ 63 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVK-TGVAVEMVDLRAVDPQ-----------------ELIEAVSSARGIVLGTPPSQ 63 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHH-TTCCEEEEETTTCCHH-----------------HHHHHHHHCSEEEEECCBSS
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCCHH-----------------HHHHHHHhCCEEEEEcCCcC
Confidence 89999999999999999999999998 8999999999863221 13456789999999999999
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcc
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGS 163 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~ 163 (202)
|.+|. +.|++++.. ..++||++++|+++||. +. ++..+.+.|...|+.+++.++..
T Consensus 64 g~~p~--~~fl~~l~~----~~l~gk~v~~fgs~g~~-g~---a~~~l~~~l~~~G~~~v~~~~~~-------------- 119 (161)
T 3hly_A 64 PSEAV--ATALSTIFA----AAHNKQAIGLFDSYGGD-DE---PIDALLAQFRNLGLHTAFPPIRV-------------- 119 (161)
T ss_dssp CCHHH--HHHHHHHHH----HCCTTSEEEEECCCCSS-BC---CHHHHHHHHHHTTCEESSSCBCC--------------
T ss_pred CchhH--HHHHHHHHh----hhhCCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecCceEE--------------
Confidence 88664 999999853 35899999999999984 32 46677888889999998654431
Q ss_pred cccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 164 SYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 164 ~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
...|++++++++++||++|++.+++
T Consensus 120 -----------~~~P~~~dl~~~~~~g~~la~~l~~ 144 (161)
T 3hly_A 120 -----------KDQPTEAIYQQCEESGTDLGQWLTR 144 (161)
T ss_dssp -----------CSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------eeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2579999999999999999998875
No 8
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=99.96 E-value=2.2e-28 Score=180.22 Aligned_cols=144 Identities=14% Similarity=0.202 Sum_probs=119.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC-CcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET-LSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
+||+|+|+|++|||+++|+.|++++++ .|++++++++.+. .+. ....++.+||+|||||||
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~-~g~~v~~~~~~~~~~~~-----------------~~~~~~~~~d~ii~Gspt 66 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITK-TGVGVDVVDLGAAVDLQ-----------------ELRELVGRCTGLVIGMSP 66 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHH-TTCEEEEEESSSCCCHH-----------------HHHHHHHTEEEEEEECCB
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHH-CCCeEEEEECcCcCCHH-----------------HHHHHHHhCCEEEEEcCc
Confidence 489999999999999999999999998 8999999999863 221 135678899999999999
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028917 82 RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKG 161 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~ 161 (202)
|+|.+| ++.|++.+.. ..++||++++|+++||. ++ ++..+.+.|...|+.+++.++.+
T Consensus 67 y~g~~p--~~~~l~~l~~----~~~~~k~va~fgs~g~~-~~---a~~~l~~~l~~~G~~~v~~~~~~------------ 124 (159)
T 3fni_A 67 AASAAS--IQGALSTILG----SVNEKQAVGIFETGGGD-DE---PIDPLLSKFRNLGLTTAFPAIRI------------ 124 (159)
T ss_dssp TTSHHH--HHHHHHHHHH----HCCTTSEEEEECCSSSC-BC---CHHHHHHHHHHTTCEESSSCBCC------------
T ss_pred CCCCcc--HHHHHHHHHh----hcccCCEEEEEEcCCCC-cH---HHHHHHHHHHHCCCEEecCceEE------------
Confidence 999866 4999998853 35799999999999884 32 35677778888999998654431
Q ss_pred cccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 162 GSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 162 ~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
..+|+++|+++|++||++|++.+++
T Consensus 125 -------------~~~P~~~dl~~~~~~g~~la~~~~~ 149 (159)
T 3fni_A 125 -------------KQTPTENTYKLCEEAGTDLGQWVTR 149 (159)
T ss_dssp -------------SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------EeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2579999999999999999998875
No 9
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=99.95 E-value=3.4e-28 Score=185.19 Aligned_cols=173 Identities=16% Similarity=0.052 Sum_probs=129.3
Q ss_pred CCceEEEEEecC--CChHHHHHHHHHHH-hhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 1 MATKIYIVYYSL--YGHVETMAREVQRG-ANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~--~G~T~~la~~i~~~-~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
|||||+|||+|+ +|||+++++.++++ +++ .|++++++++.+....+|..+ |... +++. ...+++.+||+|||
T Consensus 1 mMmkilii~gS~r~~g~t~~la~~i~~~~l~~-~g~~v~~~dl~~~~~~~~~~~--~~~~-~~~~-~~~~~i~~aD~ii~ 75 (197)
T 2vzf_A 1 MTYSIVAISGSPSRNSTTAKLAEYALAHVLAR-SDSQGRHIHVIDLDPKALLRG--DLSN-AKLK-EAVDATCNADGLIV 75 (197)
T ss_dssp CCEEEEEEECCSSTTCHHHHHHHHHHHHHHHH-SSEEEEEEEGGGSCHHHHHHT--CTTS-HHHH-HHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCChHHHHHHHHHHHHHHH-CCCeEEEEEccccCchhhccc--ccCc-HHHH-HHHHHHHHCCEEEE
Confidence 778999999998 69999999999999 988 799999999987544444433 3222 2222 24578999999999
Q ss_pred eccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHH-HHHHHHHHcCcEEecCCCcCCCCcccc
Q 028917 78 GFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTAL-TAVTQLAHHGMLFVPLGYTFGSGMFEM 156 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~-~~~~~l~~~g~~vv~~~~~~~~~~~~~ 156 (202)
+||+||+++|+.+|+|+|++.. ..++||++++|+++|+. ++. .++. .+...+...|+.+++.+....
T Consensus 76 ~sP~y~~~~p~~lK~~ld~l~~----~~~~gK~~~~~~tgg~~-~~~-~a~~~~l~~~l~~~g~~~v~~~v~~~------ 143 (197)
T 2vzf_A 76 ATPIYKASYTGLLKAFLDILPQ----FALAGKAALPLATGGSP-AHV-LALDYGLRPVLHSMGVRHVVQSFFLV------ 143 (197)
T ss_dssp EEECBTTBCCHHHHHHHTTSCT----TTTTTCEEEEEEEESSG-GGG-GHHHHTHHHHHHTTTCSEECCCEEEE------
T ss_pred EeCccCCCCCHHHHHHHHhccc----cccCCCEEEEEEECCCc-chh-hHHHHHHHHHHHHcCCEeccceEEEe------
Confidence 9999999999999999999852 36899999999997764 332 2453 577788889999987543310
Q ss_pred ccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 157 NEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
...+ .+..++. .+++++.++++++++++++.+++
T Consensus 144 -----~~~~---~~~~~g~-~~d~~~~~~l~~~~~~l~~~i~~ 177 (197)
T 2vzf_A 144 -----QSQF---SVVDGKL-AVEDDVASQLNNAIDHFRLSLSS 177 (197)
T ss_dssp -----SCCC--------CC-CSCHHHHHHHHHHHHHHHHTCCC
T ss_pred -----chhh---cccCCCC-cCCHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0111232 68999999999999999987654
No 10
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=99.95 E-value=3.5e-27 Score=169.65 Aligned_cols=135 Identities=21% Similarity=0.332 Sum_probs=115.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFG 84 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g 84 (202)
|+|+|+|++|||+++|+.|++++++ .|++++++++.+. ...++.++|.||||+|||++
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~iiig~pty~~ 58 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIE-SGKDVNTINVSDV---------------------NIDELLNEDILILGCSAMTD 58 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHH-TTCCCEEEEGGGC---------------------CHHHHTTCSEEEEEECCBTT
T ss_pred CEEEEECCCchHHHHHHHHHHHHHH-CCCeEEEEEhhhC---------------------CHHHHhhCCEEEEEcCccCC
Confidence 6899999999999999999999999 8999999999762 35678999999999999999
Q ss_pred cchH--HHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCc
Q 028917 85 VMAA--QCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGG 162 (202)
Q Consensus 85 ~~~~--~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~ 162 (202)
++++ .++.|++++.. .++||++++|+++||.. + .++..+.+.|..+|+.+++.++..
T Consensus 59 g~~p~~~~~~fl~~l~~-----~l~~k~~~~f~t~g~~~-~--~a~~~l~~~l~~~G~~~v~~~~~~------------- 117 (138)
T 5nul_A 59 EVLEESEFEPFIEEIST-----KISGKKVALFGSYGWGD-G--KWMRDFEERMNGYGCVVVETPLIV------------- 117 (138)
T ss_dssp TBCCTTTHHHHHHHHGG-----GCTTCEEEEEEEESSSC-S--HHHHHHHHHHHHTTCEECSCCEEE-------------
T ss_pred CCCChHHHHHHHHHHHh-----hcCCCEEEEEEecCCCC-C--hHHHHHHHHHHHCCCEEECCceEE-------------
Confidence 8654 79999999852 38999999999999853 2 467888899999999998654431
Q ss_pred ccccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 163 SSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 163 ~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
+.+|+++| ++|++||++|++
T Consensus 118 ------------~~~p~~~d-~~~~~~~~~l~~ 137 (138)
T 5nul_A 118 ------------QNEPDEAE-QDCIEFGKKIAN 137 (138)
T ss_dssp ------------ESSCGGGH-HHHHHHHHHHHT
T ss_pred ------------ecCCCHHH-HHHHHHHHHHhc
Confidence 25799999 999999999975
No 11
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=99.95 E-value=6.1e-27 Score=170.29 Aligned_cols=143 Identities=19% Similarity=0.200 Sum_probs=116.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhc-cCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLK-EADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ad~ii~gs 79 (202)
|| ||+|+|+|++|||+++|+.|++++++ .|++++++++.+. ...++. ++|.||||+
T Consensus 1 M~-ki~I~y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~~d~ii~g~ 57 (148)
T 3f6r_A 1 MS-KVLIVFGSSTGNTESIAQKLEELIAA-GGHEVTLLNAADA---------------------SAENLADGYDAVLFGC 57 (148)
T ss_dssp -C-EEEEEEECSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTB---------------------CCTTTTTTCSEEEEEE
T ss_pred CC-eEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEehhhC---------------------CHhHhcccCCEEEEEe
Confidence 55 99999999999999999999999998 8999999999763 234566 999999999
Q ss_pred cccC---CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccc
Q 028917 80 PSRF---GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEM 156 (202)
Q Consensus 80 P~y~---g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~ 156 (202)
|||+ |.+|+.++.|++++.. ..++||++++|++++...++...++..+...|...|+.+++.+..+
T Consensus 58 pty~~~~G~~p~~~~~fl~~l~~----~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~------- 126 (148)
T 3f6r_A 58 SAWGMEDLEMQDDFLSLFEEFDR----IGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAEGLKM------- 126 (148)
T ss_dssp CEECSSSCEECHHHHHHHTTGGG----TCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSCCEEE-------
T ss_pred cccCCCCCCCcHHHHHHHHHhhc----cCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeecceEe-------
Confidence 9998 6999999999999853 3689999999998543223334567788889999999998654321
Q ss_pred ccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHH
Q 028917 157 NEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 157 ~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
...|++ +++++++++++|++.
T Consensus 127 ------------------~~~p~~-~~~~~~~~~~~l~~~ 147 (148)
T 3f6r_A 127 ------------------EGDASN-DPEAVASFAEDVLKQ 147 (148)
T ss_dssp ------------------ESSGGG-CHHHHHHHHHHHHHT
T ss_pred ------------------ecCcch-HHHHHHHHHHHHHhh
Confidence 146888 999999999999864
No 12
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=99.94 E-value=6e-27 Score=183.62 Aligned_cols=168 Identities=13% Similarity=0.073 Sum_probs=128.7
Q ss_pred CCceEEEEEecCC--ChHHHHHHHHHHHhhccC-CceEEEEEccCCCcH-------HHHhhcCCCCCC-CCCCcCChhhh
Q 028917 1 MATKIYIVYYSLY--GHVETMAREVQRGANSVL-GVEATLWQVPETLSS-------VILQKMKAPPKT-NDVPVIRPHQL 69 (202)
Q Consensus 1 M~~kiliiy~S~~--G~T~~la~~i~~~~~~~~-g~~v~~~~l~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~l 69 (202)
|| ||+|||+|+. |||.++++.+++++++ . |++++++++.+..++ .|.....|+.+. +++. ...+++
T Consensus 1 Mm-kIliI~gS~r~~s~T~~la~~i~~~l~~-~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~~l 77 (242)
T 1sqs_A 1 MN-KIFIYAGVRNHNSKTLEYTKRLSSIISS-RNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGG-VIKKEL 77 (242)
T ss_dssp CC-EEEEEECCCCTTCHHHHHHHHHHHHHHH-HSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHH-HHHHHH
T ss_pred CC-eEEEEECCCCCCChHHHHHHHHHHHHHH-hcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHH-HHHHHH
Confidence 65 9999999995 9999999999999988 7 999999999885332 232334565431 3343 257889
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcC
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTF 149 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~ 149 (202)
.+||+|||+||+||+++|+.||+|||++...+....++||++++|+|+|+. | ...++..+...+...|+.+++. +..
T Consensus 78 ~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g-~~~~~~~l~~~l~~~G~~~v~~-~~~ 154 (242)
T 1sqs_A 78 LESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-G-SDNVSEYLRDIFSYMGGQILHQ-VSI 154 (242)
T ss_dssp HHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-C-SCCHHHHHHHHHHHTTCEEEEE-EEE
T ss_pred HHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-c-hhhHHHHHHHHHHHCCCeeeeE-EEE
Confidence 999999999999999999999999999954332336899999999998874 2 2245777888888899998863 210
Q ss_pred CCCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 150 GSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 150 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
. ..+++++.++++++|++|++.+++
T Consensus 155 --------------------~-----~~~~~~~~~~~~~~~~~la~~i~~ 179 (242)
T 1sqs_A 155 --------------------T-----NSLKDIAEAQLMEATYKIEDVLEG 179 (242)
T ss_dssp --------------------E-----GGGGGGHHHHHHHHHHHHHHHHTT
T ss_pred --------------------e-----ccCChHHHHHHHHHHHHHHHHHhc
Confidence 1 112346899999999999998764
No 13
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=99.93 E-value=3.2e-25 Score=173.90 Aligned_cols=176 Identities=16% Similarity=0.130 Sum_probs=131.0
Q ss_pred CceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 2 ATKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 2 ~~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|+||+||++|+ .|+|+++++.+++++++ .|+++++++|.+.....+ +...++++. ...+++.+||+|||+|
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~-~g~eve~idL~~~pl~~~-----d~~~~d~~~-~l~~~i~~AD~iI~~s 106 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEF-FGAEVKVFDPSGLPLPDA-----APVSHPKVQ-ELRELSIWSEGQVWVS 106 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHH-TTCEEEECCCTTCCCTTS-----SCTTSHHHH-HHHHHHHHCSEEEEEE
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhh-CCCEEEEEEhhcCCCCcC-----CCCCCHHHH-HHHHHHHHCCEEEEEe
Confidence 45999999998 48999999999999998 899999999987421110 000011122 2478899999999999
Q ss_pred cccCCcchHHHHHHHHhhhhhhh-hccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccc
Q 028917 80 PSRFGVMAAQCKAFFDATYELWA-SQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNE 158 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~-~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~ 158 (202)
|+||+++|+.||+|||++...|. ...++||++++++++|+. |+. .++..+...+...|+.+++..+.++
T Consensus 107 P~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~-gg~-~a~~~Lr~~l~~lg~~~v~~~v~i~-------- 176 (247)
T 2q62_A 107 PERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGS-QSF-NAVNQMRILGRWMRMITIPNQSSVA-------- 176 (247)
T ss_dssp ECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECSCCEEES--------
T ss_pred CCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCc-cHH-HHHHHHHHHHHHCCCEEeCCEEEEe--------
Confidence 99999999999999999965432 136899999999998874 443 4677888889999999986544321
Q ss_pred ccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 159 VKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
..+. .+..++. ..+++..++++++++++++.++.++
T Consensus 177 ----~~~~--~fd~~g~-l~d~~~~~~l~~~~~~l~~~~~~l~ 212 (247)
T 2q62_A 177 ----KAFQ--EFDANGR-MKPSSYYDRVVDVMEELVKFTLLTR 212 (247)
T ss_dssp ----SGGG--GBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----cchh--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1222232 2467788999999999999998765
No 14
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=99.93 E-value=1.6e-25 Score=177.68 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=131.7
Q ss_pred CCceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 1 MATKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 1 M~~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
+++||++|++|+ .|+|+++++.+++++++ .|+++++++|.+.....+.. .. .++++. .+.+++.+||+|||+
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~-~G~eveiidL~dlpl~~~d~---~~-~~d~v~-~l~e~I~~ADgiV~a 130 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQF-FGAETRIFDPSDLPLPDQVQ---SD-DHPAVK-ELRALSEWSEGQVWC 130 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHH-TTCEEEEBCCTTCCCTTTSG---GG-CCHHHH-HHHHHHHHCSEEEEE
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhh-CCCEEEEEehhcCCCCccCc---cC-CCHHHH-HHHHHHHHCCeEEEE
Confidence 356999999998 49999999999999998 89999999998842111100 00 111222 257899999999999
Q ss_pred ccccCCcchHHHHHHHHhhhhhhh-hccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccc
Q 028917 79 FPSRFGVMAAQCKAFFDATYELWA-SQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMN 157 (202)
Q Consensus 79 sP~y~g~~~~~~k~fld~~~~~~~-~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~ 157 (202)
||+||+++|+.||+|||++...|. ...++||++++++++|+. |+. .++..+...+...|+.+++..+.+.
T Consensus 131 SP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~-gg~-~a~~~Lr~~l~~lg~~vv~~~v~v~------- 201 (279)
T 2fzv_A 131 SPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGS-QSF-NAVNTLRLLGRWMRMFTIPNQSSIA------- 201 (279)
T ss_dssp EEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSS-CCC-HHHHHHHHHHHHTTCEECSCCEEET-------
T ss_pred cCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCc-cHH-HHHHHHHHHHHhcCcEEeCCEEEEe-------
Confidence 999999999999999999965432 135899999999998874 443 4678888889999999986544321
Q ss_pred cccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 158 EVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
..+. .|..++. ..+++..++++.+++++++.++.++
T Consensus 202 -----~~~~--~fd~~G~-l~d~~~~~~l~~~~~~l~~~~~~l~ 237 (279)
T 2fzv_A 202 -----KAFQ--EFDAAGR-MKPSPYYDRIADVMEELVRFTALVR 237 (279)
T ss_dssp -----TGGG--TBCTTSC-BCSSHHHHHHHHHHHHHHHHHHHHG
T ss_pred -----cccc--ccCCCCC-cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1222232 2466788999999999999988765
No 15
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=99.93 E-value=2.7e-26 Score=174.04 Aligned_cols=177 Identities=12% Similarity=0.049 Sum_probs=126.6
Q ss_pred CCceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 1 MATKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 1 M~~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
||+||+||++|+ +|+|.++++.++++++ .|+++++++|.+ +|.... ...|... +++. ...+++.+||+|||+
T Consensus 1 MM~kilii~gS~r~~s~t~~la~~~~~~~~--~~~~v~~~dl~~-lp~~~~-~~~~~~~-~~~~-~~~~~i~~AD~iV~~ 74 (192)
T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIG--DRAQVSYLSYDR-VPFFNQ-DLETSVH-PEVA-HAREEVQEADAIWIF 74 (192)
T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHT--TSSEEEECCCSS-CCCCCG-GGTTSCC-HHHH-HHHHHHHHCSEEEEE
T ss_pred CCCEEEEEEcCCCCCCHHHHHHHHHHHhcC--CCCEEEEEeCcc-CCCCCc-ccccCCc-HHHH-HHHHHHHhCCEEEEE
Confidence 788999999998 6899999999999997 588999999987 332100 1123222 2222 257899999999999
Q ss_pred ccccCCcchHHHHHHHHhhhhhh------hhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCC
Q 028917 79 FPSRFGVMAAQCKAFFDATYELW------ASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSG 152 (202)
Q Consensus 79 sP~y~g~~~~~~k~fld~~~~~~------~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~ 152 (202)
||+||+++|+.+|+|||++.... ....|+||++++++++|+. |+ ..++..+...+...|+.+++......
T Consensus 75 sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g~-~~~~~~l~~~l~~~G~~~v~~~v~~~-- 150 (192)
T 3fvw_A 75 SPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-SP-EEVFEDYRSLLPFIRMHLVDQLTGVP-- 150 (192)
T ss_dssp CCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC-----CCSHHHHHHHHHTTCEECCCCEEEC--
T ss_pred CcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-ch-hHHHHHHHHHHHHcCCeeecceeecc--
Confidence 99999999999999999997532 1135899999999998873 32 33466777888889999997543210
Q ss_pred ccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHh
Q 028917 153 MFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 200 (202)
Q Consensus 153 ~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~ 200 (202)
+....|. ++...++++..++++.+.+++.+.+..|
T Consensus 151 ------------~~~~~f~-~g~~~~~~~~~~~l~~~~~~l~~~~~~~ 185 (192)
T 3fvw_A 151 ------------INSEAWS-TGILKVSAEKLAELSAQADALLSAIENL 185 (192)
T ss_dssp ------------CCTTHHH-HCCCCCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred ------------cchhhcc-CCccccCHHHHHHHHHHHHHHHHHHHhh
Confidence 0001122 3444568999999999999998887654
No 16
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=99.93 E-value=2.1e-25 Score=161.92 Aligned_cols=141 Identities=19% Similarity=0.136 Sum_probs=115.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhcc-CCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKE-ADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ad~ii~gsP~y 82 (202)
|++|+|+|++|||+++|+.|++++++ .|++++++++.+. ...++.+ +|.|||++|+|
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~~d~ii~~~p~y 59 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELAD-AGYEVDSRDAASV---------------------EAGGLFEGFDLVLLGCSTW 59 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHH-HTCEEEEEEGGGC---------------------CSTTTTTTCSEEEEEECEE
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHh-cCCeeEEEehhhC---------------------CHHHhcCcCCEEEEEeCCC
Confidence 89999999999999999999999998 7999999998762 2335778 99999999999
Q ss_pred C-Cc--chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 83 F-GV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 83 ~-g~--~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
+ |. +|+.++.|++++.. ..+++|++++|+++++..++...++..+...|..+|+.+++.+..
T Consensus 60 ~~g~~~~p~~~~~fl~~l~~----~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~----------- 124 (147)
T 1f4p_A 60 GDDSIELQDDFIPLFDSLEE----TGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQDGLR----------- 124 (147)
T ss_dssp CSSSCEECTTTHHHHHTGGG----SCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEE-----------
T ss_pred CCCCcCCChhHHHHHHHHHh----cccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhcccc-----------
Confidence 4 67 79999999999853 368999999999965533444567888999999999988864332
Q ss_pred cCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHH
Q 028917 160 KGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
. ...|++ +++++++++++|++.
T Consensus 125 ----------~----~~~p~~-~~~~~~~~~~~l~~~ 146 (147)
T 1f4p_A 125 ----------I----DGDPRA-ARDDIVGWAHDVRGA 146 (147)
T ss_dssp ----------E----ESCGGG-GHHHHHHHHHHHHTT
T ss_pred ----------c----ccCchh-HHHHHHHHHHHHHhh
Confidence 1 134766 899999999999753
No 17
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=99.93 E-value=4e-25 Score=158.30 Aligned_cols=133 Identities=22% Similarity=0.310 Sum_probs=111.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCC
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFG 84 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g 84 (202)
|+|+|+|++|||+++|+.+++++++ .|++++++++.+. ...++.++|.|||++|+|++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~vi~g~p~y~~ 59 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKA-AGADVESVRFEDT---------------------NVDDVASKDVILLGCPAMGS 59 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHH-TTCCEEEEETTSC---------------------CHHHHHTCSEEEEECCCBTT
T ss_pred EEEEEECCCChHHHHHHHHHHHHHh-CCCeEEEEEcccC---------------------CHHHHhcCCEEEEEccccCC
Confidence 8999999999999999999999998 8999999998762 34678999999999999999
Q ss_pred cchHH--HHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCc
Q 028917 85 VMAAQ--CKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGG 162 (202)
Q Consensus 85 ~~~~~--~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~ 162 (202)
++|+. ++.|+|++. ..++||++++|+|+|+..+ .++..+...+...|+.+++ .+.
T Consensus 60 ~~~~~~~~~~fl~~l~-----~~l~~k~~~~~~t~g~~~~---~~~~~l~~~l~~~g~~~~~-~~~-------------- 116 (137)
T 2fz5_A 60 EELEDSVVEPFFTDLA-----PKLKGKKVGLFGSYGWGSG---EWMDAWKQRTEDTGATVIG-TAI-------------- 116 (137)
T ss_dssp TBCCHHHHHHHHHHHG-----GGCSSCEEEEEEEESSCCS---HHHHHHHHHHHHTTCEEEE-EEE--------------
T ss_pred CCCCHHHHHHHHHHhh-----hhcCCCEEEEEEecCCCCc---hHHHHHHHHHHHCCCEEcC-cEE--------------
Confidence 99998 999999984 3689999999999987422 4678888889889999883 222
Q ss_pred ccccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 163 SSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 163 ~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
. .+.|++ +++++++|++|++
T Consensus 117 -------~----~g~~~~--~~~~~~~~~~l~~ 136 (137)
T 2fz5_A 117 -------V----NEMPDN--APECKELGEAAAK 136 (137)
T ss_dssp -------E----ESSSSS--CTHHHHHHHHHHT
T ss_pred -------E----eeCCCh--HHHHHHHHHHHhc
Confidence 1 134665 9999999999875
No 18
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=99.92 E-value=2e-24 Score=181.25 Aligned_cols=149 Identities=23% Similarity=0.252 Sum_probs=122.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
|+|++|+|+|++|||+++|+.|++++++ .|++++++++.+.... ...+++.+||+||||||+
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~-~g~~v~~~~l~~~~~~-----------------~~~~~l~~~D~iiigsP~ 317 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARS-TGCETVLLEMTSSDIT-----------------KVALHTYDSGAVAFASPT 317 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGCCHH-----------------HHHHHHHTCSEEEEECCC
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-CCCeEEEEEcCcCCHH-----------------HHHHHHHhCCEEEEEcCc
Confidence 3599999999999999999999999998 8999999999763111 134689999999999999
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHH-cCcEEecCC-CcCCCCcccccc
Q 028917 82 RFGVMAAQCKAFFDATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAH-HGMLFVPLG-YTFGSGMFEMNE 158 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~-~g~~vv~~~-~~~~~~~~~~~~ 158 (202)
|++++|+.+|+|+|++... .+ +||++++|+++|+. ++ +...+...|.. +|+.+++.+ +.
T Consensus 318 y~~~~~~~~k~fld~l~~~----~~~~~K~~~~~~t~g~~-~~---a~~~l~~~l~~~~g~~~~~~~~~~---------- 379 (414)
T 2q9u_A 318 LNNTMMPSVAAALNYVRGL----TLIKGKPAFAFGAFGWS-NR---AVPDIVAELRDGCKADVYDEKGIT---------- 379 (414)
T ss_dssp BTTBCCHHHHHHHHHHHHH----TTTTTSBEEEEEEESSS-CC---HHHHHHHHHHHTSCCBCCCSSCEE----------
T ss_pred cCcCchHHHHHHHHHHHhh----cccCCCEEEEEEecCCC-ch---hHHHHHHHHHhhcCcEEccCccEE----------
Confidence 9999999999999998642 46 89999999999885 43 35567777888 899887643 21
Q ss_pred ccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 159 VKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 159 ~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
. ...|+++++++++++|+++++.+++++
T Consensus 380 -----------~----~~~p~~~~~~~~~~~g~~l~~~~~~~~ 407 (414)
T 2q9u_A 380 -----------F----KFNYTEELLEQAYNAGVDLGKRAIAYC 407 (414)
T ss_dssp -----------E----ESCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------E----eeCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 146899999999999999999887754
No 19
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=99.92 E-value=4.5e-25 Score=167.27 Aligned_cols=173 Identities=18% Similarity=0.083 Sum_probs=123.8
Q ss_pred ceEEEEEecCC--ChHHHHHHHHHHHhhccCCceEEEEEccCCCcH--HHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 3 TKIYIVYYSLY--GHVETMAREVQRGANSVLGVEATLWQVPETLSS--VILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 3 ~kiliiy~S~~--G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
|||+|||+|++ |||+++++.++++++ .|++++++++.+ +|. .|..+ | ..++++. ...+++.+||+|||+
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~--~g~~v~~~dl~~-~p~~~~~~~~--~-~~~~~~~-~~~~~l~~aD~ii~~ 79 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP--PGMSIELADISG-IPLYNEDVYA--L-GFPPAVE-RFREQIRAADALLFA 79 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC--TTCEEEECCCTT-CCCCCHHHHT--T-CCCHHHH-HHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc--CCCeEEEEeHHH-CCCCCccccc--c-CCCHHHH-HHHHHHHhCCEEEEE
Confidence 48999999984 999999999999997 488999999987 332 23221 1 1112222 246789999999999
Q ss_pred ccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC-CCcCCCCccccc
Q 028917 79 FPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL-GYTFGSGMFEMN 157 (202)
Q Consensus 79 sP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~-~~~~~~~~~~~~ 157 (202)
||+||+++|+.+|+|||++...+. ..++||++++|+++|+..++ ..++..+...+...|+.+++. .+...
T Consensus 80 sP~y~~~~p~~lK~~iD~~~~~~~-~~l~gK~~~~~~t~gg~~g~-~~~~~~l~~~l~~~g~~~~~~~~~~~~------- 150 (193)
T 1rtt_A 80 TPEYNYSMAGVLKNAIDWASRPPE-QPFSGKPAAILGASAGRFGT-ARAQYHLRQTLVFLDVHPLNKPEVMIS------- 150 (193)
T ss_dssp CCEETTEECHHHHHHHHHHTCSSS-CTTTTCEEEEEEECSSTTTT-HHHHHHHHHHHHHHTCEECCSSCEEEC-------
T ss_pred ccccccCcCHHHHHHHHHhccccC-cccCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHcCCEEcCCCeEEec-------
Confidence 999999999999999999964221 35899999999998654444 356788888888899999874 33210
Q ss_pred cccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 158 EVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
.... .+..++. ..+++..++++++++++.+.+.+
T Consensus 151 -----~~~~--~~~~~~~-~~~~~~~~~l~~~~~~l~~~~~~ 184 (193)
T 1rtt_A 151 -----SAQN--AFDAQGR-LLDDKARELIQQQLQALQLWVRE 184 (193)
T ss_dssp -----SGGG--TBCSTTC-BCCHHHHHHHHHHHHHHHC----
T ss_pred -----chHh--hcCcCCC-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 1222232 34678899999999999887765
No 20
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=99.92 E-value=4.5e-24 Score=161.10 Aligned_cols=173 Identities=18% Similarity=0.172 Sum_probs=127.5
Q ss_pred CCceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcH--HHHhhcCCCCCCCCCCc---CChhhhccCC
Q 028917 1 MATKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSS--VILQKMKAPPKTNDVPV---IRPHQLKEAD 73 (202)
Q Consensus 1 M~~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~l~~ad 73 (202)
||++|+||.||. .++++++++.+++.++ .+++++++++.+ +|. .... .+.|+ ...+.+.+||
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~--~~~~~~~idl~d-LP~~~~d~~--------~~~p~~~~~l~~~i~~aD 69 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE--GRLEFHLLHIGD-LPHYNDDLW--------ADAPESVLRLKDRIEHSD 69 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT--TTEEEEECCGGG-SCCCCGGGG--------GGCCHHHHHHHHHHHTSS
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc--CCCEEEEEeccc-CCCCCCCcc--------cCCCHHHHHHHHHHHhCC
Confidence 898999999997 5689999999988876 589999999987 332 1111 11121 1357899999
Q ss_pred eeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCc
Q 028917 74 GFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGM 153 (202)
Q Consensus 74 ~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~ 153 (202)
++||+||+|++++|+.+|++||++.+.+....|.||++++++++++..|+. .+...++..|...|+.+++.+... +
T Consensus 70 ~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~-~a~~~Lr~vl~~lg~~v~~~p~~~---i 145 (190)
T 3u7r_A 70 AVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAA-LAQARLKNDLLHVGTVMMSMPEAY---I 145 (190)
T ss_dssp EEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTH-HHHHHHHHHHHTTTCEECCCSCCE---E
T ss_pred cEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHH-HHHHHHHHHHHHcCCEEccCCEEE---E
Confidence 999999999999999999999999764444579999999998876655554 457788888889999988643210 0
Q ss_pred cccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 154 FEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 154 ~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
.. ....|+.+|. ..|++..++++.+.+++++.+++
T Consensus 146 --------~~--~~~~fd~~G~-l~de~~~~~l~~~~~~~~~~i~~ 180 (190)
T 3u7r_A 146 --------QW--HAEAYAADGS-VTDEKTAKFLQGFVDAFVDWIEK 180 (190)
T ss_dssp --------EC--CGGGBCTTSC-BCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ec--cHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 0112333443 35788889999999999999876
No 21
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=99.92 E-value=2.2e-25 Score=166.40 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=119.5
Q ss_pred eEEEEEecCC--ChHHHHHHHHHHHhhccCCceEEEEEccCC-CcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 4 KIYIVYYSLY--GHVETMAREVQRGANSVLGVEATLWQVPET-LSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 4 kiliiy~S~~--G~T~~la~~i~~~~~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
||+|||+|++ |||+++++.+++.++. +++++.+. +|. |..+..|... +++. ...+++.+||+|||+||
T Consensus 2 kilii~gS~~~~g~t~~la~~i~~~l~~------~~i~l~~~~lp~-~~~~~~~~~~-~~~~-~~~~~i~~aD~ii~~tP 72 (174)
T 3gfs_A 2 NMLVINGTPRKHGRTRIAASYIAALYHT------DLIDLSEFVLPV-FNGEAEQSEL-LKVQ-ELKQRVTKADAIVLLSP 72 (174)
T ss_dssp -CEEEECCCCTTCHHHHHHHHHHHHTTC------EEEETTTSCCCC-CCCCHHHHTC-HHHH-HHHHHHHHCSSEEEEEE
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHhCcc------eEEeeecCCCCC-CCChhhccCc-HHHH-HHHHHHHHCCEEEEEcC
Confidence 8999999996 9999999999999864 56777653 221 1000001111 1222 24678999999999999
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
+||+++|+.+|+|||++.. ..++||++++++++|+..|+ ..++..+...+...|+.+++.+..+.
T Consensus 73 ~y~~~~p~~lk~~lD~l~~----~~~~gK~~~~~~~sgg~~g~-~~a~~~l~~~l~~~g~~~v~~~v~i~---------- 137 (174)
T 3gfs_A 73 EYHSGMSGALKNALDFLSS----EQFKYKPVALLAVAGGGDGG-INALNNMRTVMRGVYANVIPKQLVLK---------- 137 (174)
T ss_dssp CSSSSCCHHHHHHHHTCCH----HHHTTCEEEEEEECCSTTCS-HHHHHHHHHHHHHTTCEEEEEEEEEC----------
T ss_pred CcCCCCCHHHHHHHHHhCH----hhhCCCcEEEEEECCCChhH-HHHHHHHHHHHHHcCCEEecceEEec----------
Confidence 9999999999999999853 36899999999976654444 35678888899999999997544321
Q ss_pred CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 161 GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 161 ~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
...|.. ....++++..+++.++++++++.++.
T Consensus 138 ------~~~f~~-~~~~~~~~~~~~l~~~~~~l~~~~~~ 169 (174)
T 3gfs_A 138 ------PVHIDV-ENATVAENIKESIKELVEELSMFAKA 169 (174)
T ss_dssp ------GGGEET-TTTEECHHHHHHHHHHHHHHHHHHHC
T ss_pred ------hhhcCC-CCCccCHHHHHHHHHHHHHHHHHHHc
Confidence 001221 12467899999999999999998764
No 22
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=99.92 E-value=1.7e-24 Score=164.87 Aligned_cols=175 Identities=18% Similarity=0.095 Sum_probs=129.1
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCCceEE-EEEccCCCcH--HHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLGVEAT-LWQVPETLSS--VILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~-~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
|||++|++|+ .|+|+++++.+++.++ .|++++ +++|.+ +|. .+... |... +++. ...+++.+||+|||
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~~--~g~~v~~~idL~~-lP~~~~~~~~--~~~~-~~~~-~~~~~i~~AD~iVi 79 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIAP--EGIAITPLGSIGT-FPHYSQDVQE--EGFP-APVL-TMAQQIATADAVVI 79 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHCC--TTEEEEECCCGGG-SCCCCHHHHH--HCCC-HHHH-HHHHHHHHSSEEEE
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHcc--CCCEEEEEEehhh-cCCCCccccc--cCCC-HHHH-HHHHHHHhCCEEEE
Confidence 5999999997 5899999999999996 589999 999987 342 11111 1111 2222 25788999999999
Q ss_pred eccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC-CcCCCCcccc
Q 028917 78 GFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG-YTFGSGMFEM 156 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~-~~~~~~~~~~ 156 (202)
+||+||+++|+.+|+|||++.. +....|+||++++++++|+..|+. .+...++..+...|+.+++.+ +.+.
T Consensus 80 ~tP~Y~~s~p~~LK~~iD~~~~-~~~~~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~il~~lg~~~v~~~~v~i~------ 151 (199)
T 4hs4_A 80 VTPEYNYSVPGVLKNAIDWLSR-VSPQPLAGKPVALVTASPGMIGGA-RAQNHLRQSLVFLDAYVLNRPEAMIG------ 151 (199)
T ss_dssp EECCBTTBCCHHHHHHHHHHTT-SSSCTTTTCEEEEEEECSSSSCSH-HHHHHHHHHHHHTTCEECCSSCEEEC------
T ss_pred EcCccCCCcCHHHHHHHHHhcc-cCCcccCCCEEEEEEeCCCCcccH-HHHHHHHHHHHHcCCEEcCCCeEEee------
Confidence 9999999999999999999964 112478999999999987655554 467788888899999999742 3210
Q ss_pred ccccCcccccceeecCC-CCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 157 NEVKGGSSYGAGTFAAD-GSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 157 ~~~~~~~~~g~~~~~~~-~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
... ..|+.+ |. ..+++..++++.+.+++++.+++++
T Consensus 152 ------~~~--~~fd~~~g~-l~d~~~~~~l~~~~~~l~~~~~~~~ 188 (199)
T 4hs4_A 152 ------QVT--GKVDAQTLE-LSDVATREFLARQLDALAALARTLS 188 (199)
T ss_dssp ------SGG--GTBCSSSCC-BCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------chh--hhcCCcCCC-cCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 113322 33 3478889999999999999988764
No 23
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=99.91 E-value=1.3e-25 Score=168.69 Aligned_cols=166 Identities=16% Similarity=0.094 Sum_probs=109.5
Q ss_pred CCceEEEEEecCC--ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcC-----CCCCCCCCCcCChhhhccCC
Q 028917 1 MATKIYIVYYSLY--GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMK-----APPKTNDVPVIRPHQLKEAD 73 (202)
Q Consensus 1 M~~kiliiy~S~~--G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~ad 73 (202)
|| ||+|||+|++ |||+++++.+++++ +++.+++.+.....|..+.. |..+ +++. ...+++.+||
T Consensus 3 mM-kilii~~S~r~~g~t~~la~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~~aD 73 (184)
T 1rli_A 3 AM-KIAVINGGTRSGGNTDVLAEKAVQGF------DAEHIYLQKYPIQPIEDLRHAQGGFRPVQ-DDYD-SIIERILQCH 73 (184)
T ss_dssp ---CEEEEESSCSSCCHHHHHHHHHHTTT------CCEEEEC------------------------CHH-HHHHHHHTCS
T ss_pred Cc-EEEEEECCCCCCccHHHHHHHHHcCC------eEEEEEcCCCCCccCCccccccCCCCCCC-CCHH-HHHHHHHhCC
Confidence 44 9999999985 99999999999876 35777887754333433322 3332 3333 2467899999
Q ss_pred eeEEeccccCCcchHHHHHHHHhhhhhhh-------hccCCCCceEEEEecCCCCC-ChHHHHHHHHHHHHHcCcEEecC
Q 028917 74 GFLFGFPSRFGVMAAQCKAFFDATYELWA-------SQALAGKPAGIFWSTGFHGG-GQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 74 ~ii~gsP~y~g~~~~~~k~fld~~~~~~~-------~~~l~gK~~~~~~t~g~~~g-~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
+|||+||+||+++|+.+|+|||++...+. ...++||++++|+++|+... +...++..+...+...|+.+++.
T Consensus 74 ~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~~ 153 (184)
T 1rli_A 74 ILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGY 153 (184)
T ss_dssp EEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccceE
Confidence 99999999999999999999999864321 12478999999999876311 12345778888888899998862
Q ss_pred CCcCCCCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 146 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
-.. . +.. .+...++++++++++++|++++.
T Consensus 154 ~~~-----------~-g~~--------~~~~~~~~~~l~~a~~lg~~~~~ 183 (184)
T 1rli_A 154 VLG-----------E-GNR--------PGDILRDHQALSAASRLLKRSDA 183 (184)
T ss_dssp EEE-----------E-CSS--------TTGGGGCHHHHHHHHHTTCCCCC
T ss_pred EEE-----------c-cCC--------cchhhcCHHHHHHHHHhhhhccc
Confidence 111 0 000 11134588999999999998763
No 24
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=99.91 E-value=1.6e-24 Score=163.76 Aligned_cols=171 Identities=14% Similarity=0.136 Sum_probs=123.9
Q ss_pred CceEEEEEecC--CChHHHHHHHHHH----HhhccC--CceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCC
Q 028917 2 ATKIYIVYYSL--YGHVETMAREVQR----GANSVL--GVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEAD 73 (202)
Q Consensus 2 ~~kiliiy~S~--~G~T~~la~~i~~----~~~~~~--g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad 73 (202)
|+||++|++|+ .|+|.++++.+++ .+++ . |+++++++|.+..++.|..+..|... +++. ...+++.+||
T Consensus 11 ~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~-~~~g~eve~idL~d~~l~~~~~~~~~~~~-~~~~-~~~~~i~~AD 87 (191)
T 3k1y_A 11 MRTLAVISAGLSTPSSTRQIADSISEAVTAAVSA-RGEALSVSTIELSELIPDLMTAMTTRVHT-TKLE-EITSALSASD 87 (191)
T ss_dssp SEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEEEGGGCHHHHTTTTSSSCCC-HHHH-HHHHHHHHCS
T ss_pred hceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHh-cCCCceEEEEEHHhCCCcccChhhcCCCC-HHHH-HHHHHHHHCC
Confidence 56999999998 5899999999999 6655 4 78999999998533333322222221 2333 2578999999
Q ss_pred eeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHH-HHHHHHHcCcEEecCCCcCCCC
Q 028917 74 GFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALT-AVTQLAHHGMLFVPLGYTFGSG 152 (202)
Q Consensus 74 ~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~-~~~~l~~~g~~vv~~~~~~~~~ 152 (202)
+|||+||+||+++|+.||+|||++.+ ..|+||++++++++|+..+ . ..+.. +...|...|+.+++......
T Consensus 88 ~ivi~sP~Y~~~~~~~lK~~iD~~~~----~~l~gK~~~~v~t~G~~~~-~-~~~~~~L~~il~~lg~~vv~~~v~~~-- 159 (191)
T 3k1y_A 88 GLVVATPVFKASYTGLFKMFFDILDT----DALTGMPTIIAATAGSARH-S-LVLDYALRPLLSYMRAVVVPTGVFAA-- 159 (191)
T ss_dssp EEEEEEECBTTBSCHHHHHHHHHSCT----TTTTTCEEEEEEEESSSTT-T-THHHHTHHHHHHHTTCEECSCCEEEE--
T ss_pred EEEEEcCccCCcCcHHHHHHHHHhhh----hhcCCCEEEEEEeCCCcch-h-hHHHHHHHHHHHHCCCEEcCcEEEec--
Confidence 99999999999999999999999963 4789999999999887533 3 23334 67778888999997644310
Q ss_pred ccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 153 MFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 153 ~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
.. .|.. . .+++..+++.+++++++..+++-+
T Consensus 160 ---------~~-----~f~~---~-~~~~~~~rl~~~~~~~~~~~~~~~ 190 (191)
T 3k1y_A 160 ---------TE-----DFGG---P-EGAEFNKRIARAAGELASLIVEES 190 (191)
T ss_dssp ---------GG-----GCSH---H-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ---------hh-----hcCC---C-CCHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0111 1 146678888888888888887643
No 25
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=99.91 E-value=4.2e-23 Score=153.13 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=119.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
|||+|+|+|++|||+++|+.|++++.+ . ++++++++.+. ...++.++|.||||+|+|
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~-~-~~v~~~~~~~~---------------------~~~~l~~~d~ii~g~pty 57 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGG-E-SIVDLNDIANA---------------------DASDLNAYDYLIIGCPTW 57 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTS-T-TTEEEEEGGGC---------------------CGGGGGGCSEEEEECCEE
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCc-c-cceEEEEhhhC---------------------CHhHHhhCCEEEEEeccc
Confidence 389999999999999999999999987 5 67899998752 245788999999999999
Q ss_pred C-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 83 F-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GG-GQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 83 ~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~g-~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
+ |.+|+.++.|++++.. ..++||++++|+++++. .+ ....++..+...+...|+.+++.....+..+..+..+
T Consensus 58 ~~g~~p~~~~~f~~~l~~----~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~ 133 (169)
T 1czn_A 58 NVGELQSDWEGIYDDLDS----VNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKAV 133 (169)
T ss_dssp TTTEECHHHHHHGGGGGG----SCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTE
T ss_pred CCCcCCHHHHHHHHHhhh----hccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcceecchhe
Confidence 8 7799999999998842 47899999999998653 33 3456788888899999999987311111111111111
Q ss_pred cCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 160 KGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
..+.+.|. .+ +. .++++++.+++.+|++++.+.+
T Consensus 134 ~~~~~~gl-~~--~~-~~~~~~~~~~~~~w~~~~~~~~ 167 (169)
T 1czn_A 134 RNNQFVGL-AI--DE-DNQPDLTKNRIKTWVSQLKSEF 167 (169)
T ss_dssp ETTEESSE-EE--CT-TTCGGGHHHHHHHHHHHHHHHT
T ss_pred eCCeeeee-ee--cC-CCccccCHHHHHHHHHHHHHHh
Confidence 11122222 11 11 3567889999999999987653
No 26
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=99.90 E-value=2e-22 Score=149.51 Aligned_cols=163 Identities=15% Similarity=0.151 Sum_probs=117.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
|||+|+|+|++|||+++|+.|++.+.+ . +++++++.+. ...++.++|.||||+|+|
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~-~--~v~~~~~~~~---------------------~~~~l~~~d~ii~g~p~y 57 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGN-D--VVTLHDVSQA---------------------EVTDLNDYQYLIIGCPTL 57 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCT-T--TEEEEETTTC---------------------CGGGGGGCSEEEEEEEEE
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCc-C--CcEEEEcccC---------------------CHHHHhhCCEEEEEEeeC
Confidence 489999999999999999999999986 3 6888888652 245788999999999999
Q ss_pred C-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 83 F-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GG-GQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 83 ~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~g-~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
+ |.+|..++.|++++.. ..++||++++|+++++. .+ ....++..+...+...|+.+++.....+..+..+..+
T Consensus 58 ~~g~~p~~~~~fl~~l~~----~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~~~~~g~~~~~s~~~ 133 (169)
T 1obo_A 58 NIGELQSDWEGLYSELDD----VDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKAL 133 (169)
T ss_dssp TTTEECHHHHHHHTTGGG----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCCEECTTCCCSCCTTE
T ss_pred CCCcCCHHHHHHHHHhhh----cCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeecCCCcccccchhh
Confidence 6 7788889999998853 37899999999998752 23 2346788898999999999987422111111111111
Q ss_pred cCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 160 KGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
..+.+.|. .. + ...+++.+.+++.+|++++.+.+
T Consensus 134 ~~~~~~~l-~~--~-~~~~~~~~~~~~~~w~~~~~~~l 167 (169)
T 1obo_A 134 RNGKFVGL-AL--D-EDNQSDLTDDRIKSWVAQLKSEF 167 (169)
T ss_dssp ETTEESSE-EE--C-TTTCGGGHHHHHHHHHHHHHHHH
T ss_pred cCCceeeE-Ee--e-CCCccccCHHHHHHHHHHHHHHh
Confidence 11112222 11 1 12356778999999999987654
No 27
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=99.90 E-value=2.7e-23 Score=173.60 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=121.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+|++|+|+|++|||+++|+.+++++.+ .|++++++++.+.... ....++.+||+||||||+|
T Consensus 257 ~k~~i~~~S~~gnT~~la~~i~~~l~~-~g~~v~~~~~~~~~~~-----------------~~~~~l~~~d~iiigsP~y 318 (404)
T 2ohh_A 257 ERVTVIYDTMHGSTRKMAHAIAEGAMS-EGVDVRVYCLHEDDRS-----------------EIVKDILESGAIALGAPTI 318 (404)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHT-TTCEEEEEETTTSCHH-----------------HHHHHHHTCSEEEEECCEE
T ss_pred CcEEEEEECCChHHHHHHHHHHHHHHh-CCCeEEEEECCCCCHH-----------------HHHHHHHHCCEEEEECccc
Confidence 489999999999999999999999998 8999999999763211 1356899999999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGG 162 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~ 162 (202)
++++|+.+|+|+|++...+... |+||++++|+++|+. ++ ++..+...|..+|+.+++. +.
T Consensus 319 ~~~~~~~~k~~ld~l~~~~~~~-l~~k~~~~~~~~g~~-~~---a~~~l~~~l~~~g~~~~~~-~~-------------- 378 (404)
T 2ohh_A 319 YDEPYPSVGDLLMYLRGLKFNR-TLTRKALVFGSMGGN-GG---ATGTMKELLAEAGFDVACE-EE-------------- 378 (404)
T ss_dssp TTEECTHHHHHHHHHHHHCGGG-TCCEEEEEEEEESSS-CC---HHHHHHHHHHHTTEEEEEE-EE--------------
T ss_pred cccchHHHHHHHHHhhhccccc-cCCCEEEEEEecCCC-Ch---hHHHHHHHHHHCCCEEEeE-EE--------------
Confidence 9999999999999997654434 799999999998874 33 3557778888889998863 21
Q ss_pred ccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHH
Q 028917 163 SSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 163 ~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~ 198 (202)
. ...|+++++++++++++++++.++
T Consensus 379 -------~----~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 2ohh_A 379 -------V----YYVPTGDELDACFEAGRKLAAEIR 403 (404)
T ss_dssp -------E----ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -------E----eeCCCHHHHHHHHHHHHHHHHHHh
Confidence 0 135889999999999999998764
No 28
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=99.89 E-value=2.1e-23 Score=158.14 Aligned_cols=177 Identities=20% Similarity=0.142 Sum_probs=126.3
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCCceEE-EEEccCCCcH--HHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLGVEAT-LWQVPETLSS--VILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~-~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
|||++|++|+ .++|.++++++++.+ + .|++++ +++|.+ +|. .+... .|... +++. ...+++.+||+|||
T Consensus 5 mkil~I~GS~r~~s~t~~l~~~~~~~~-~-~g~~v~~~idL~~-lP~~~~~~~~-~~~~~-~~~~-~l~~~i~~AD~iv~ 78 (193)
T 3svl_A 5 LQVVTLLGSLRKGSFNGMVARTLPKIA-P-ASMEVNALPSIAD-IPLYDADVQQ-EEGFP-ATVE-ALAEQIRQADGVVI 78 (193)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHGGGTS-C-TTEEEEECCCSTT-CCCCCHHHHH-HTCSC-HHHH-HHHHHHHHSSEEEE
T ss_pred CEEEEEEccCCCCCHHHHHHHHHHHHc-c-CCCEEEEEEeHHH-CCCCCccccc-ccCCC-HHHH-HHHHHHHHCCEEEE
Confidence 5999999998 589999999987765 4 689999 999988 442 11111 23222 2222 25789999999999
Q ss_pred eccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccc
Q 028917 78 GFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMN 157 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~ 157 (202)
+||+||+++|+.+|+|||++... ....|+||++++++++++..|+. .+...++..|...|+.+++.+...
T Consensus 79 ~sP~y~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg~-~a~~~Lr~~l~~lg~~v~~~~~~~-------- 148 (193)
T 3svl_A 79 VTPEYNYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGGA-RCQYHLRQILVFLDAMVMNKPEFM-------- 148 (193)
T ss_dssp EECCBTTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTTH-HHHHHHHHHHHHTTCEECCSSCEE--------
T ss_pred EecccCCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcchH-HHHHHHHHHHHHCCCEEcCCCeEe--------
Confidence 99999999999999999999642 12468999999999876545554 467888888899999999643210
Q ss_pred cccCcccccceeecCC-CCCCCCHHHHHHHHHHhHHHHHHHHHhh
Q 028917 158 EVKGGSSYGAGTFAAD-GSRQPTDLELQQAFHQGKYVAEIAKKLK 201 (202)
Q Consensus 158 ~~~~~~~~g~~~~~~~-~~~~p~e~~~~~a~~~g~~l~~~~~~~~ 201 (202)
.+... ..|..+ |. ..|++..++++++.+++++.+++++
T Consensus 149 ---~~~~~--~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~~ 187 (193)
T 3svl_A 149 ---GGVIQ--NKVDPQTGE-VIDQGTLDHLTGQLTAFGEFIQRVK 187 (193)
T ss_dssp ---ETTGG--GGEETTTTE-ECCHHHHHHHHHHHHHHHHHTC---
T ss_pred ---ecchh--hhcCCCCCc-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 00001 113332 43 3578899999999999999887653
No 29
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=99.89 E-value=1.2e-22 Score=155.58 Aligned_cols=170 Identities=16% Similarity=0.083 Sum_probs=116.3
Q ss_pred CCceEEEEEecCC----ChHHHHHHHHHHHhhccCC--ceEEEEEcc--CC-CcH--HHHhh----------------cC
Q 028917 1 MATKIYIVYYSLY----GHVETMAREVQRGANSVLG--VEATLWQVP--ET-LSS--VILQK----------------MK 53 (202)
Q Consensus 1 M~~kiliiy~S~~----G~T~~la~~i~~~~~~~~g--~~v~~~~l~--~~-~~~--~~~~~----------------~~ 53 (202)
|| ||+||++|+. |+|.+|++.+++++++ .| ++|++++|. +. .|. .|..+ ..
T Consensus 1 M~-kilii~gS~r~~~~s~t~~la~~~~~~~~~-~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 78 (208)
T 2hpv_A 1 MS-KLLVVKAHPLTKEESRSVRALETFLASYRE-TNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQ 78 (208)
T ss_dssp -C-EEEEEECCSSCTTTCHHHHHHHHHHHHHHH-HCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHH
T ss_pred CC-eEEEEEecCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHH
Confidence 55 9999999986 8999999999999998 66 999999998 64 332 11100 01
Q ss_pred CCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhh---h------hhccCCCCceEEEEecCCCCCCh
Q 028917 54 APPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL---W------ASQALAGKPAGIFWSTGFHGGGQ 124 (202)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~---~------~~~~l~gK~~~~~~t~g~~~g~~ 124 (202)
|... +++. ...+++.+||+|||+||+||+++|+.||+|||++... + ....++||++++++|+|+..++.
T Consensus 79 ~~~~-~~~~-~~~~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~ 156 (208)
T 2hpv_A 79 QQKV-ARFN-ELTDQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGK 156 (208)
T ss_dssp HHHH-HHHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSC
T ss_pred HhhH-HHHH-HHHHHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCc
Confidence 1111 2222 2567899999999999999999999999999998531 1 11347999999998887654432
Q ss_pred HHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 125 ELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 125 ~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
......+...+...|+.+++. +.. .+. +......++.++++++.++++++
T Consensus 157 ~~~~~~l~~~~~~~G~~~~~~-~~~---------------~~~-----~~~~~~~~~~l~~a~~~~~~l~~ 206 (208)
T 2hpv_A 157 DFASQYIKAILNFIGVDQVDG-LFI---------------EGI-----DHFPDRAEELLNTAMTKATEYGK 206 (208)
T ss_dssp SHHHHHHHHHHHHTTCCEEEE-EEE---------------ECT-----TTCGGGHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCeeeE-EEE---------------ccc-----cCCHHHHHHHHHHHHHHHHHHHh
Confidence 334556667778889887752 110 000 10001234567888888888875
No 30
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=99.89 E-value=1.5e-23 Score=158.43 Aligned_cols=131 Identities=18% Similarity=0.110 Sum_probs=101.2
Q ss_pred eEEEEEecCC--ChHHHHHHHHHHHhhccC------CceEEEEEccCCCcHHHHhhcC---------CCCCCCCCCcCCh
Q 028917 4 KIYIVYYSLY--GHVETMAREVQRGANSVL------GVEATLWQVPETLSSVILQKMK---------APPKTNDVPVIRP 66 (202)
Q Consensus 4 kiliiy~S~~--G~T~~la~~i~~~~~~~~------g~~v~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 66 (202)
||+|||+|++ |||+++++.+++++++ . |+++++++|.+...+.|..+.. |...++++. ...
T Consensus 2 kilii~gS~r~~~~t~~la~~~~~~l~~-~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 79 (191)
T 1t0i_A 2 KVGIIMGSVRAKRVCPEIAAYVKRTIEN-SEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTR-SWS 79 (191)
T ss_dssp EEEEEECCCCSSCSHHHHHHHHHHHHHT-CTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHH-HHH
T ss_pred eEEEEeCCCCCCCchHHHHHHHHHHHHH-hhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHH-HHH
Confidence 8999999996 9999999999999987 5 7899999998732212222111 222212222 246
Q ss_pred hhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 67 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
+++.+||+|||+||+||+++|+.+|+|||++. ..++||+++++++ |+. ++ ..++..+...+...|+.+++
T Consensus 80 ~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~-----~~l~gK~~~~~~~-G~~-~~-~~~~~~l~~~l~~~G~~~~~ 149 (191)
T 1t0i_A 80 RIVNALDIIVFVTPQYNWGYPAALKNAIDRLY-----HEWHGKPALVVSY-GGH-GG-SKCNDQLQEVLHGLKMNVIG 149 (191)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCS-----TTTTTCEEEEEEE-ETT-TT-HHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhCCEEEEEeceECCCCCHHHHHHHHHHH-----hhcCCCEEEEEEe-CCc-ch-hhHHHHHHHHHHHCCCEEcc
Confidence 78999999999999999999999999999985 2589999998865 553 33 35678888889999999987
No 31
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=99.89 E-value=1.7e-22 Score=149.75 Aligned_cols=145 Identities=12% Similarity=-0.011 Sum_probs=113.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+|++|+|+|++|||+++|+.|++++.+ .|++++++++.+. ...++.++|.||||+|||
T Consensus 10 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~~---------------------~~~~l~~~d~ii~g~pt~ 67 (167)
T 1ykg_A 10 PGITIISASQTGNARRVAEALRDDLLA-AKLNVKLVNAGDY---------------------KFKQIASEKLLIVVTSTQ 67 (167)
T ss_dssp --CEEEEECSSSHHHHHHHHHHHHHHH-HTCCCEEEEGGGC---------------------CGGGGGGCSEEEEEEECB
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEeehhhC---------------------CHHHhccCCeEEEEEccc
Confidence 489999999999999999999999998 7889999998752 245688999999999999
Q ss_pred -CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028917 83 -FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKG 161 (202)
Q Consensus 83 -~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~ 161 (202)
+|.+|..++.|++.+.... ...+++|++++|++++...++...+...+...|...|+.++....
T Consensus 68 g~G~~p~~~~~f~~~l~~~~-~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~~~-------------- 132 (167)
T 1ykg_A 68 GEGEPPEEAVALHKFLFSKK-APKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRV-------------- 132 (167)
T ss_dssp GGGBCCGGGHHHHHHHTSTT-CCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSCCE--------------
T ss_pred CCCcCChhHHHHHHHHHhcc-ccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeecce--------------
Confidence 7999999999999984210 025889999999976543333445678888888888988775321
Q ss_pred cccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 162 GSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 162 ~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
..++++.+.+++++++|.+.++.
T Consensus 133 ---------------~~d~~~~~~~~~w~~~l~~~l~~ 155 (167)
T 1ykg_A 133 ---------------DADVEYQAAASEWRARVVDALKS 155 (167)
T ss_dssp ---------------EECTTCHHHHHHHHHHHHHHHHT
T ss_pred ---------------ecCCCcHHHHHHHHHHHHHHHHh
Confidence 12245788899999999887754
No 32
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=99.89 E-value=8.6e-22 Score=147.02 Aligned_cols=163 Identities=18% Similarity=0.165 Sum_probs=117.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR- 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y- 82 (202)
||+|+|+|++|||+++|+.|++.+.+ . .++++++.+. ...++.++|.||||+|||
T Consensus 2 ki~IvY~S~tGnT~~iA~~Ia~~l~~-~--~v~i~~~~~~---------------------~~~~l~~~d~ii~g~pt~~ 57 (175)
T 1ag9_A 2 ITGIFFGSDTGNTENIAKMIQKQLGK-D--VADVHDIAKS---------------------SKEDLEAYDILLLGIPTWY 57 (175)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHCT-T--TEEEEEGGGC---------------------CHHHHHTCSEEEEECCEET
T ss_pred EEEEEEECCCchHHHHHHHHHHHhcc-C--ceEEEEcccC---------------------ChhHhhhCCEEEEEEeecC
Confidence 89999999999999999999999976 3 5788887652 356789999999999997
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCC-C-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCcccccccc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHG-G-GQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVK 160 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~-g-~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~ 160 (202)
.|.+|+.++.|++.+.. ..++||++++|++++..+ + ....++..+...|...|+.+++.....|..+..+..+.
T Consensus 58 ~G~~p~~~~~f~~~l~~----~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~g~~~~~s~~~~ 133 (175)
T 1ag9_A 58 YGEAQCDWDDFFPTLEE----IDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLA 133 (175)
T ss_dssp TTEECHHHHHHHHHHTT----CCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEECCCEECTTCCCSCCSCEE
T ss_pred CCcChHHHHHHHhhhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEEecCCCcccccchhee
Confidence 58999999999998842 368999999999976421 1 12367888888999999999974322222221111111
Q ss_pred -CcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHH
Q 028917 161 -GGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 161 -~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~ 198 (202)
.+.+.|. .. + ..++++.+.+++.+|+++|.+.+.
T Consensus 134 ~~~~~~gl-~~--~-~~~~~~~~~~~i~~w~~~i~~~~~ 168 (175)
T 1ag9_A 134 DDDHFVGL-AI--D-EDRQPELTAERVEKWVKQISEELH 168 (175)
T ss_dssp ETTEESSE-EE--C-TTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred eCCeEEee-ec--C-CCCcccccHHHHHHHHHHHHHHhh
Confidence 1112222 11 1 124667889999999999987653
No 33
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=99.89 E-value=1.9e-22 Score=151.44 Aligned_cols=166 Identities=17% Similarity=0.114 Sum_probs=117.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||+|+|+|++|||+++|+.|++.+.+ . ++++++++.+. ...++.++|.||||+|
T Consensus 1 M~-kilIiY~S~tGnT~~iA~~ia~~l~~-~-~~v~~~~~~~~---------------------~~~~l~~~d~ii~g~p 56 (182)
T 2wc1_A 1 MA-KIGLFFGSDTGTTRKIAKQIKDMFDD-E-VMAKPLNVNRA---------------------DVADFMAYDFLILGTP 56 (182)
T ss_dssp CC-SEEEEECCSSSHHHHHHHHHHTTSCT-T-TBCCCEEGGGC---------------------CHHHHHHCSEEEEEEE
T ss_pred Cc-EEEEEEECCCchHHHHHHHHHHHhcc-c-CceEEEEcccC---------------------CHHHHhhCCeEEEEEe
Confidence 54 99999999999999999999999986 4 67788887652 3567899999999999
Q ss_pred ccC-Ccch--------HHHHHHHHhhhhhhhhccCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcC
Q 028917 81 SRF-GVMA--------AQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GG-GQELTALTAVTQLAHHGMLFVPLGYTF 149 (202)
Q Consensus 81 ~y~-g~~~--------~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~g-~~~~~l~~~~~~l~~~g~~vv~~~~~~ 149 (202)
||+ |.+| ..++.|++++.. ..++||++++|++++.. .+ ....++..+...|...|+.+++.....
T Consensus 57 ty~~G~~pg~~~~~~~~~~~~f~~~l~~----~~l~gk~~avfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v~~~~~~ 132 (182)
T 2wc1_A 57 TLGDGQLPGLSANAASESWEEFLPRIAD----QDFSGKTIALFGLGDQVTYPLEFVNALFFLHEFFSDRGANVVGRWPAK 132 (182)
T ss_dssp CBTTTBCSSGGGTCSSCCHHHHGGGGTT----CCCTTCEEEEEEECCTTTCTTSTTTHHHHHHHHHHTTTCEEECCEECT
T ss_pred eCCCCCCCccccccchhHHHHHHHHhhh----ccCCCCEEEEEEeCCCcccchhHHHHHHHHHHHHHHCCCEEEEeecCC
Confidence 999 8889 889999999853 36899999999997742 21 223567788888999999999753222
Q ss_pred CCCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHH
Q 028917 150 GSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 150 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~ 198 (202)
+..+..+..+..+.+.|... +. ...++.+.+++..+.++|.+.+.
T Consensus 133 g~~~~~~~~~~~~~~~gl~~---d~-~~~~~~~~~~~~~w~~~l~~~l~ 177 (182)
T 2wc1_A 133 GYGFEDSLAVVEGEFLGLAL---DQ-DNQAALTPERLKGWLSLIAADFG 177 (182)
T ss_dssp TSCCSCCTTEETTEESSEEE---CT-TTCGGGHHHHHHHHHHHTHHHHT
T ss_pred CcCcccchhhhcCceeeeec---cC-CCCccccHHHHHHHHHHHHHHHh
Confidence 22111111111112223211 11 11224578888999999877654
No 34
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=99.89 E-value=2.7e-22 Score=152.40 Aligned_cols=141 Identities=17% Similarity=0.094 Sum_probs=102.4
Q ss_pred CCceEEEEEecCC---ChHHHHHHHHHHHhhccCC--ceEEEEEccCC-CcH--HHHhh--cCCCCCC-----CC---CC
Q 028917 1 MATKIYIVYYSLY---GHVETMAREVQRGANSVLG--VEATLWQVPET-LSS--VILQK--MKAPPKT-----ND---VP 62 (202)
Q Consensus 1 M~~kiliiy~S~~---G~T~~la~~i~~~~~~~~g--~~v~~~~l~~~-~~~--~~~~~--~~~~~~~-----~~---~~ 62 (202)
|| ||+|||+|++ |||+++++.+++++++ .| +++++++|.+. .|. .|..+ ..|.... |+ +.
T Consensus 1 Mm-kilii~~S~~~~~s~t~~la~~~~~~l~~-~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 78 (201)
T 1t5b_A 1 MS-KVLVLKSSILAGYSQSGQLTDYFIEQWRE-KHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSD 78 (201)
T ss_dssp CC-EEEEEECCSSGGGCHHHHHHHHHHHHHHH-HCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHH
T ss_pred CC-eEEEEEeCCCCCCChHHHHHHHHHHHHHH-hCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHH
Confidence 65 9999999996 8999999999999998 65 89999999875 332 22211 1121100 11 11
Q ss_pred cCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhh-hh--------hccCCCCceEEEEecCCCCCCh--HHHHHHH
Q 028917 63 VIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-WA--------SQALAGKPAGIFWSTGFHGGGQ--ELTALTA 131 (202)
Q Consensus 63 ~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~-~~--------~~~l~gK~~~~~~t~g~~~g~~--~~~l~~~ 131 (202)
...+++.+||+|||+||+||+++|+.+|+|||++... +. ...++||++++|+++|+..++. +.+...+
T Consensus 79 -~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l 157 (201)
T 1t5b_A 79 -ELIAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYL 157 (201)
T ss_dssp -HHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHH
T ss_pred -HHHHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHH
Confidence 1357899999999999999999999999999998531 10 1258999999999988754331 2245667
Q ss_pred HHHHHHcCcEEec
Q 028917 132 VTQLAHHGMLFVP 144 (202)
Q Consensus 132 ~~~l~~~g~~vv~ 144 (202)
...+...|+.+++
T Consensus 158 ~~~l~~~G~~~~~ 170 (201)
T 1t5b_A 158 KVFLGFIGITDVN 170 (201)
T ss_dssp HHHHHHTTCCCEE
T ss_pred HHHHhhcCcceeE
Confidence 7778888988775
No 35
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=99.81 E-value=1.1e-24 Score=165.91 Aligned_cols=176 Identities=16% Similarity=0.087 Sum_probs=126.6
Q ss_pred ceEEEEEecCC--ChHHHHHHHHHHHhhccCCceEEEE-EccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLY--GHVETMAREVQRGANSVLGVEATLW-QVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~--G~T~~la~~i~~~~~~~~g~~v~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|||+||++|+. |+|+++++.+++.+++ |++++++ +|.+ +|..|.....|... +++. ...+++.+||+|||+|
T Consensus 7 mkIliI~gS~r~~s~t~~la~~~~~~~~~--g~~v~~i~dl~~-lp~~~~~~~~~~~~-~~~~-~~~~~i~~AD~iIi~t 81 (199)
T 3s2y_A 7 LHFVTLLGSLRKASFNAAVARALPEIAPE--GIAITPLGSIGT-FPHYSQDVQEEGFP-APVL-TMAQQIATADAVVIVT 81 (199)
Confidence 49999999984 8999999999999985 8899999 9987 44322222223222 4444 3678999999999999
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC-CCcCCCCcccccc
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL-GYTFGSGMFEMNE 158 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~-~~~~~~~~~~~~~ 158 (202)
|+||+++|+.+|+|||++...+.. .|+||++++++++++..|+. .+...+...|...|+.+++. ++.+.
T Consensus 82 P~Y~~s~p~~lK~~iD~l~~~~~~-~l~gK~v~~v~tsgg~~g~~-~a~~~Lr~~l~~lg~~~v~~~~v~i~-------- 151 (199)
T 3s2y_A 82 PEYNYSVPGVLKNAIDWLSRVSPQ-PLAGKPVALVTASPGMIGGA-RAQYHLRQSLVFLDAYVLNRPEAMIG-------- 151 (199)
Confidence 999999999999999999653321 68999999999875544432 35677788888889999875 33321
Q ss_pred ccCcccccceeecCC-CCCCCCHHHHHHHHHHhHHHHHHHHHh
Q 028917 159 VKGGSSYGAGTFAAD-GSRQPTDLELQQAFHQGKYVAEIAKKL 200 (202)
Q Consensus 159 ~~~~~~~g~~~~~~~-~~~~p~e~~~~~a~~~g~~l~~~~~~~ 200 (202)
... ..|..+ |. ..|++..++++.+.+++++.++..
T Consensus 152 ----~~~--~~f~~~~g~-l~d~~~~~~l~~~~~~~~~~~~~~ 187 (199)
T 3s2y_A 152 ----QVT--GKVDAQTLE-LSDVATREFLARQLDALAALARTL 187 (199)
Confidence 000 013322 33 235667788888888888877654
No 36
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=99.88 E-value=6.1e-22 Score=148.35 Aligned_cols=164 Identities=13% Similarity=0.077 Sum_probs=119.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||+|+|+|++|||+++|+.|++++.. +++++++++.+. ...++.++|.||||+|||
T Consensus 1 ~kilI~Y~S~tGnT~~iA~~ia~~l~~--~~~v~~~~~~~~---------------------~~~~l~~~d~iilg~pt~ 57 (179)
T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKRFDD--ETMSDALNVNRV---------------------SAEDFAQYQFLILGTPTL 57 (179)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHTTSCT--TTBCCCEEGGGC---------------------CHHHHHTCSEEEEEEECB
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCC--CCceEEEEhhhC---------------------CHHHHhcCCEEEEEeccC
Confidence 389999999999999999999999975 566778887652 356788999999999999
Q ss_pred C-Ccch--------HHHHHHHHhhhhhhhhccCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCCC
Q 028917 83 F-GVMA--------AQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GG-GQELTALTAVTQLAHHGMLFVPLGYTFGS 151 (202)
Q Consensus 83 ~-g~~~--------~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~g-~~~~~l~~~~~~l~~~g~~vv~~~~~~~~ 151 (202)
+ |.+| ..++.|++++.. ..++||++++|++++.. .+ ....++..+...+...|+.+++.....+.
T Consensus 58 ~~G~~pg~~~~~~~~~~~~fl~~l~~----~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~~~~~~~g~ 133 (179)
T 1yob_A 58 GEGELPGLSSDAENESWEEFLPKIEG----LDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIVGSWSTDGY 133 (179)
T ss_dssp TTTBCSSGGGTCSSCCHHHHHHHHTT----CCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEECCBCCTTC
T ss_pred CCCcCCcccccccchHHHHHHHHhhh----cccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEeeccCCC
Confidence 9 8999 899999999842 36899999999997653 22 23467888888999999999975333232
Q ss_pred CccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 152 GMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 152 ~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
.+..+..+..+.+.|+. . +. ..+++.+.++++.+.++|...+
T Consensus 134 ~~~~s~~~~~~~f~gl~-~--d~-~~~~~~~~~~i~~w~~~l~~~~ 175 (179)
T 1yob_A 134 EFESSEAVVDGKFVGLA-L--DL-DNQSGKTDERVAAWLAQIAPEF 175 (179)
T ss_dssp CCSCCTTBSSSSBSSEE-E--CT-TTCGGGHHHHHHHHHHHHGGGG
T ss_pred CcccchhhhcCceeccc-c--CC-CCCCcccHHHHHHHHHHHHHHH
Confidence 22222223333333431 1 11 1345678899999998886543
No 37
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=99.88 E-value=9.7e-22 Score=164.07 Aligned_cols=147 Identities=18% Similarity=0.185 Sum_probs=122.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+|++|+|+|++|||+++|+.+++++.+ .|++++++++.+.... ...+++.+||+||||||+|
T Consensus 253 ~kv~i~y~S~~Gnt~~lA~~i~~~l~~-~g~~v~~~~~~~~~~~-----------------~~~~~~~~~d~ii~gsp~~ 314 (402)
T 1e5d_A 253 NKVVIFYDSMWHSTEKMARVLAESFRD-EGCTVKLMWCKACHHS-----------------QIMSEISDAGAVIVGSPTH 314 (402)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEETTTSCHH-----------------HHHHHHHTCSEEEEECCCB
T ss_pred CcEEEEEECCChhHHHHHHHHHHHHHh-CCCeEEEEECCCCCHH-----------------HHHHHHHHCCEEEEECCcc
Confidence 589999999999999999999999998 8999999999763111 1356789999999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGG 162 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~ 162 (202)
++++++.+++|++++.. ..++||++++|+++++. + .++..+...+..+|+.+++.++.
T Consensus 315 ~~~~~~~~~~~l~~l~~----~~l~~k~~~~f~t~g~~-~---~a~~~l~~~l~~~G~~~~~~~~~-------------- 372 (402)
T 1e5d_A 315 NNGILPYVAGTLQYIKG----LRPQNKIGGAFGSFGWS-G---ESTKVLAEWLTGMGFDMPATPVK-------------- 372 (402)
T ss_dssp TTBCCHHHHHHHHHHHH----TCCCSCEEEEEEEESSS-C---HHHHHHHHHHHHTTCBCCSCCEE--------------
T ss_pred CCCchHHHHHHHHHhhh----cccCCCEEEEEEcCCCc-c---HHHHHHHHHHHHCCCEEecCceE--------------
Confidence 99999999999999853 36899999999998763 2 35778888899999988763332
Q ss_pred ccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHHh
Q 028917 163 SSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKKL 200 (202)
Q Consensus 163 ~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~~ 200 (202)
+ ...|++++++.+++++++|++.+++.
T Consensus 373 -------~----~~~p~~~~~~~~~~~~~~l~~~l~~~ 399 (402)
T 1e5d_A 373 -------V----KNVPTHADYEQLKTMAQTIARALKAK 399 (402)
T ss_dssp -------E----ESSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------E----eeCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 1 14689999999999999999988754
No 38
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=99.88 E-value=2.5e-22 Score=168.14 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=114.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
.+|+|+|+|++|||++||++|++++.+ .|+++.++++.+... .+++ ....++.+||+||||||||
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~-~Gv~~~~~~~~d~~~-------------~~~s-~i~~~i~~~~~ivlGspT~ 330 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKE-KGFTPVVYKFSDEER-------------PAIS-EILKDIPDSEALIFGVSTY 330 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHH-TTCEEEEEEECSSCC-------------CCHH-HHHHHSTTCSEEEEEECCT
T ss_pred cceeeEEecccChHHHHHHHHHHHHHh-cCCceEEEEeccCCC-------------CCHH-HHHHHHHhCCeEEEEeCCc
Confidence 379999999999999999999999999 999998888866311 1222 2467889999999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGG 162 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~ 162 (202)
++++++.|+.|++.+.. ..++||++++|+++||. |+ +.+.+.+.|...|+.+++....
T Consensus 331 ~~~~~p~~~~~l~~l~~----~~~~~K~~~~FGSyGWs-g~---a~~~~~~~l~~~~~~~v~~~~~-------------- 388 (410)
T 4dik_A 331 EAEIHPLMRFTLLEIID----KANYEKPVLVFGVHGWA-PS---AERTAGELLKETKFRILSFTEI-------------- 388 (410)
T ss_dssp TSSSCHHHHHHHHHHHH----HCCCCCEEEEEEECCCC-CT---TSCCHHHHHTTSSCEEEEEEEE--------------
T ss_pred CCcCCHHHHHHHHHHHh----cccCCCEEEEEECCCCC-cH---HHHHHHHHHHHCCCEEECcEEE--------------
Confidence 99999999999998864 36789999999999995 33 3456677888889998863221
Q ss_pred ccccceeecCCCCCCCCHHHHHHHHHHhHHHH
Q 028917 163 SSYGAGTFAADGSRQPTDLELQQAFHQGKYVA 194 (202)
Q Consensus 163 ~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~ 194 (202)
.+ ..|+++++++|.+++++..
T Consensus 389 ----------~~-~~~de~~lee~~~~~~~~l 409 (410)
T 4dik_A 389 ----------KG-SNMDERKIEEAISLLKKEL 409 (410)
T ss_dssp ----------CS-TTCCHHHHHHHHHHHHHHH
T ss_pred ----------EC-CCCCHHHHHHHHHHHHHhh
Confidence 01 3578888888888877643
No 39
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=99.87 E-value=7.5e-22 Score=164.55 Aligned_cols=145 Identities=19% Similarity=0.243 Sum_probs=120.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+|++|+|+|++|||+++|+.+++++.+ .|++++++++.+... . ...+++.++|+||||+|+|
T Consensus 252 ~~i~i~y~S~~GnT~~lA~~ia~~l~~-~g~~v~~~~~~~~~~----------------~-~~~~~~~~~d~ii~g~p~y 313 (398)
T 1ycg_A 252 AKAVIAYDTMWLSTEKMAHALMDGLVA-GGCEVKLFKLSVSDR----------------N-DVIKEILDARAVLVGSPTI 313 (398)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHH-TTCEEEEEEGGGSCH----------------H-HHHHHHHHCSEEEEECCCB
T ss_pred CeEEEEEECCccHHHHHHHHHHHHHHh-cCCeEEEEECCCCCH----------------H-HHHHHHHHCCEEEEECCcc
Confidence 489999999999999999999999998 899999999976311 1 1356789999999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC-CcCCCCccccccccC
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG-YTFGSGMFEMNEVKG 161 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~-~~~~~~~~~~~~~~~ 161 (202)
++++|+.+++|++++.. ..++||++++|+++|| .++ ++..+...|..+|+.+++.+ +..
T Consensus 314 ~~~~~~~~~~~l~~l~~----~~~~~k~~~~~~s~g~-~~~---a~~~l~~~l~~~g~~~~~~~~~~~------------ 373 (398)
T 1ycg_A 314 NNDILPVVSPLLDDLVG----LRPKNKVGLAFGAYGW-GGG---AQKILEERLKAAKIELIAEPGPTV------------ 373 (398)
T ss_dssp TTBCCGGGHHHHHHHHH----HCCSSCEEEEEEEESS-SCC---HHHHHHHHHHHTTCEESCSSCCEE------------
T ss_pred CccchHHHHHHHHHHhc----cccCCCEEEEEEeCCC-chH---HHHHHHHHHHHCCeEEecCceEEE------------
Confidence 99999999999999853 2589999999999887 343 46678888889999988643 321
Q ss_pred cccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHH
Q 028917 162 GSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAK 198 (202)
Q Consensus 162 ~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~ 198 (202)
...|+++++++++++|+++++.++
T Consensus 374 -------------~~~p~~~~~~~~~~~~~~l~~~~~ 397 (398)
T 1ycg_A 374 -------------QWVPRGEDLQRCYELGRKIAARIA 397 (398)
T ss_dssp -------------ESSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -------------ecCCCHHHHHHHHHHHHHHHHHHh
Confidence 135889999999999999998763
No 40
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=99.87 E-value=4.9e-21 Score=142.63 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=114.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
|++|+|+|++|||+++|+.|++.+.+ . +++++++.+. ....++.++|.||||+|||+
T Consensus 1 ki~I~Y~S~tGnT~~vA~~ia~~l~~-~--~~~~~~~~~~--------------------~~~~~l~~~d~ii~g~pt~~ 57 (173)
T 2fcr_A 1 KIGIFFSTSTGNTTEVADFIGKTLGA-K--ADAPIDVDDV--------------------TDPQALKDYDLLFLGAPTWN 57 (173)
T ss_dssp CEEEEECCSSSHHHHHHHHHHHHHGG-G--BCCCEEGGGC--------------------SCGGGGGGCSEEEEEEECCS
T ss_pred CEEEEEECCCchHHHHHHHHHHHhcc-C--CcEEEehhhc--------------------CChhHHccCCEEEEEEeecC
Confidence 68999999999999999999999986 3 5677777641 02457889999999999999
Q ss_pred -Ccc----hHHHHHHH-HhhhhhhhhccCCCCceEEEEecCCC-CC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccc
Q 028917 84 -GVM----AAQCKAFF-DATYELWASQALAGKPAGIFWSTGFH-GG-GQELTALTAVTQLAHHGMLFVPLGYTFGSGMFE 155 (202)
Q Consensus 84 -g~~----~~~~k~fl-d~~~~~~~~~~l~gK~~~~~~t~g~~-~g-~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~ 155 (202)
|.+ |..++.|+ +++.. ..++||++++|++++.. .+ ....++..+...|...|+.+++.....+..+..
T Consensus 58 ~G~~~~~~p~~~~~fl~~~l~~----~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~~~~~~~g~~~~~ 133 (173)
T 2fcr_A 58 TGADTERSGTSWDEFLYDKLPE----VDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPVGFSNPDDYDYEE 133 (173)
T ss_dssp TTCSSCCSCSTHHHHHHHTGGG----CCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEECCBCGGGSCCSC
T ss_pred CCCcCccCcHHHHHHHHhhccc----cccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEeecccCCccccc
Confidence 999 99999999 98742 46899999999997643 11 223567888888999999999743222211111
Q ss_pred cccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 156 MNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 156 ~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
+..+..+.+.|. .... ..+++.+.+++.++.+++.+.+
T Consensus 134 s~~~~~~~~~~l-~~~~---~~~~~~~~~~i~~w~~~i~~~~ 171 (173)
T 2fcr_A 134 SKSVRDGKFLGL-PLDM---VNDQIPMEKRVAGWVEAVVSET 171 (173)
T ss_dssp CTTEETTEESSE-EEET---TTCSSCHHHHHHHHHHHHHHHH
T ss_pred chhhhCCeeeee-eecC---CCCccccHHHHHHHHHHHHHHh
Confidence 111222222332 1111 1234467888889998887653
No 41
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=99.86 E-value=2.9e-23 Score=150.77 Aligned_cols=145 Identities=14% Similarity=0.048 Sum_probs=107.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| |++|+|+|++|||+++|+.|++++.+ .|+++++++..+ ..++.++|.|||++|
T Consensus 1 M~-ki~I~Y~S~tGnT~~~A~~ia~~l~~-~g~~v~~~~~~~-----------------------~~~l~~~d~vi~g~p 55 (147)
T 2hna_A 1 MA-DITLISGSTLGGAEYVAEHLAEKLEE-AGFTTETLHGPL-----------------------LEDLPASGIWLVISS 55 (147)
T ss_dssp CC-SEEEECCTTSCCCHHHHHHHHHHHHH-TTCCEEEECCTT-----------------------SCSSCSEEEEEEECC
T ss_pred CC-eEEEEEECCchHHHHHHHHHHHHHHH-CCCceEEecCCC-----------------------HHHcccCCeEEEEEC
Confidence 55 89999999999999999999999998 788888765421 234678999999999
Q ss_pred cc-CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 81 SR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 81 ~y-~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
|| +|.+|+.++.|++.+... ...+++|++++|++++...+....+...+...|...|+.++......
T Consensus 56 t~g~g~~p~~~~~f~~~l~~~--~~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~---------- 123 (147)
T 2hna_A 56 THGAGDIPDNLSPFYEALQEQ--KPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGETLKI---------- 123 (147)
T ss_dssp TTTTCCTTSSCHHHHHHHHHH--CCCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSSCBCC----------
T ss_pred ccCCCCCChhHHHHHHHHHhh--ccccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeeeeEEE----------
Confidence 99 899999999999998531 12578999999985322111111234556677888899888643321
Q ss_pred cCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 160 KGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
...|++++.+.++++++++++.+
T Consensus 124 ---------------d~~~~~~~~~~~~~w~~~~~~~l 146 (147)
T 2hna_A 124 ---------------NILDHDIPEDPAEEWLGSWVNLL 146 (147)
T ss_dssp ---------------CCSSCCSSCSCCHHHHHHHHHHH
T ss_pred ---------------ecCCCCCcHHHHHHHHHHHHHHh
Confidence 12355567778888888887764
No 42
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=99.86 E-value=1.3e-21 Score=147.78 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||+||++||..++.++++++++++++ .|.+|++++|.+..+. .++|+. ...+++.+||+|||++|
T Consensus 1 Mm-kiLiI~gsp~~~~s~l~~~l~~~~~~-~g~ev~~~dL~~~~~~----------~~~dv~-~~~~~l~~AD~iv~~~P 67 (192)
T 3f2v_A 1 MP-KTLIILAHPNISQSTVHKHWSDAVRQ-HTDRFTVHELYAVYPQ----------GKIDVA-AEQKLIETHDSLVWQFP 67 (192)
T ss_dssp -C-CEEEEECCTTGGGCSHHHHHHHHHTT-CTTTEEEEEHHHHCTT----------CCCCHH-HHHHHHHTSSSEEEEEE
T ss_pred CC-EEEEEEeCCCccHHHHHHHHHHHHHh-CCCeEEEEEchhcCCC----------CchhHH-HHHHHHHhCCEEEEEcC
Confidence 55 99999999987656899999999998 8999999999874331 012333 25789999999999999
Q ss_pred ccCCcchHHHHHHHHhhhhh-hh----hccCCCCceEEEEecCCCC------C----ChHHHHHHHHHHHHHcCcEEecC
Q 028917 81 SRFGVMAAQCKAFFDATYEL-WA----SQALAGKPAGIFWSTGFHG------G----GQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~-~~----~~~l~gK~~~~~~t~g~~~------g----~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
+||+++|+.+|.|+|++... |. ...|+||++.+++|+|++. | ..+..+..+...+...|+.+++.
T Consensus 68 ~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G~~~~~y~~~g~~~~~~~~~l~pl~~~~~f~G~~~~~~ 147 (192)
T 3f2v_A 68 IYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNADYRPP 147 (192)
T ss_dssp CBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEESSCGGGSSTTSSSCSCHHHHHHHHHHHHHHTTCEECCC
T ss_pred hhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCCCChHhhccCCccccCHHHHHHHHHHHHHhCCCeEeee
Confidence 99999999999999998532 21 1368999999999988651 1 12334555667788889998863
No 43
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=99.86 E-value=7.2e-21 Score=140.35 Aligned_cols=125 Identities=15% Similarity=0.233 Sum_probs=87.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC--CcHHHH-------hhcCCCCCCCCCCc--CChhhhc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET--LSSVIL-------QKMKAPPKTNDVPV--IRPHQLK 70 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~--~~~~~~-------~~~~~~~~~~~~~~--~~~~~l~ 70 (202)
|+|++|||+|++|||+++|+.|++.+.. +++++... +|...+ ++.....+....|+ ....++.
T Consensus 4 ~~kilIvY~S~tG~T~~vA~~Ia~~l~~------~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 77 (162)
T 3klb_A 4 DRKILVAYFSCSGVTKAVAEKLAAITGA------DLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPE 77 (162)
T ss_dssp GSCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGG
T ss_pred CCCEEEEEECCCchHHHHHHHHHHHhCC------CeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChh
Confidence 4689999999999999999999999854 44554431 221000 00000000001121 1346799
Q ss_pred cCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 71 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
+||.||||+|+|+|++|+.++.|++++ .++||++++|+|+|+.+ ...++..+.+.+. +..++
T Consensus 78 ~yd~iilG~P~~~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~~~~~l~~~l~--~~~~~ 139 (162)
T 3klb_A 78 KYEVLFVGFPVWWYIAPTIINTFLESY-------DFAGKIVVPFATSGGSG--IGNCEKNLHKAYP--DIVWK 139 (162)
T ss_dssp GCSEEEEEEECBTTBCCHHHHHHHHTS-------CCTTCEEEEEEECSSCC--SHHHHHHHHHHCT--TSEEC
T ss_pred hCCEEEEEcccccCCCCHHHHHHHHhc-------CCCCCEEEEEEEeCCCC--ccHHHHHHHHHcC--CCEee
Confidence 999999999999999999999999986 68999999999999742 3456777777765 56665
No 44
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=99.85 E-value=6e-21 Score=146.60 Aligned_cols=141 Identities=21% Similarity=0.151 Sum_probs=100.4
Q ss_pred CCceEEEEEecCC---ChHHHHHHHHHHHhhccC--CceEEEEEccCC-CcH---HHHhhcCC-CCCC------CC---C
Q 028917 1 MATKIYIVYYSLY---GHVETMAREVQRGANSVL--GVEATLWQVPET-LSS---VILQKMKA-PPKT------ND---V 61 (202)
Q Consensus 1 M~~kiliiy~S~~---G~T~~la~~i~~~~~~~~--g~~v~~~~l~~~-~~~---~~~~~~~~-~~~~------~~---~ 61 (202)
|| ||+||++|+. |+|.++++.+++++++ . |.+|+++||.+. +|. ++..+..| +... ++ +
T Consensus 1 Mm-kiLii~gSpr~~~s~t~~l~~~~~~~~~~-~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T 3r6w_A 1 MS-RILAVHASPRGERSQSRRLAEVFLAAYRE-AHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALS 78 (212)
T ss_dssp CC-CEEEEECCSCSTTCHHHHHHHHHHHHHHH-HCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHH
T ss_pred CC-EEEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHH
Confidence 65 9999999984 5799999999999987 5 899999999874 342 22223233 2110 00 1
Q ss_pred CcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhh-----h--------hccCCCCceEEEEecCCC--CCCh--
Q 028917 62 PVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELW-----A--------SQALAGKPAGIFWSTGFH--GGGQ-- 124 (202)
Q Consensus 62 ~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~-----~--------~~~l~gK~~~~~~t~g~~--~g~~-- 124 (202)
. ...+++.+||+|||+||+||+++|+.||+|||++...- . .+.|+||++.+++|+|++ .++.
T Consensus 79 ~-~~~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~ 157 (212)
T 3r6w_A 79 D-QLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRGGHGFGPGGEN 157 (212)
T ss_dssp H-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECSSSCCSTTCTT
T ss_pred H-HHHHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecCCCCcCCCCCC
Confidence 1 24578999999999999999999999999999984310 0 236899999999998832 1111
Q ss_pred ---HHHHHHHHHHHHHcCcEEec
Q 028917 125 ---ELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 125 ---~~~l~~~~~~l~~~g~~vv~ 144 (202)
+.....+...|...|+..++
T Consensus 158 ~~~~~~~~~l~~~l~~~G~~~~~ 180 (212)
T 3r6w_A 158 QAMNHADPWLRTALGFIGIDEVT 180 (212)
T ss_dssp GGGCCSHHHHHHHHHHHTCCEEE
T ss_pred CchhhhHHHHHHHHHHCCCceeE
Confidence 11234556667777988775
No 45
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=99.85 E-value=2.1e-21 Score=147.48 Aligned_cols=139 Identities=21% Similarity=0.182 Sum_probs=99.6
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCC-----CCCCCcCChhhhccCCee
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPK-----TNDVPVIRPHQLKEADGF 75 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ad~i 75 (202)
|||+||++|+ .++|.+|++.+++++ + .|.+|+++||.+.....|+.+..|... ++++. ...+++.+||+|
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~-~-~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~l~~AD~i 77 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNL-S-KEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEME-KYRDLVTWADHL 77 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHS-C-TTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGH-HHHHHHHHCSEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHh-c-CCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHH-HHHHHHHhCCEE
Confidence 3899999998 478999999999999 6 899999999987543334443333211 13333 257889999999
Q ss_pred EEeccccCCcchHHHHHHHHhhhhh-hh--------hccCCCCceEEEEecCCC--CC--ChHHHHHHHHHHHHHcCcEE
Q 028917 76 LFGFPSRFGVMAAQCKAFFDATYEL-WA--------SQALAGKPAGIFWSTGFH--GG--GQELTALTAVTQLAHHGMLF 142 (202)
Q Consensus 76 i~gsP~y~g~~~~~~k~fld~~~~~-~~--------~~~l~gK~~~~~~t~g~~--~g--~~~~~l~~~~~~l~~~g~~v 142 (202)
||++|+||+++|+.+|+|||++... |. .+.|+||++.+++|+|++ .. +.......+...+...|+..
T Consensus 78 V~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~ 157 (196)
T 3lcm_A 78 IFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISP 157 (196)
T ss_dssp EEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCC
T ss_pred EEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCce
Confidence 9999999999999999999998532 11 136899999999998875 10 00001134455566667766
Q ss_pred ec
Q 028917 143 VP 144 (202)
Q Consensus 143 v~ 144 (202)
++
T Consensus 158 ~~ 159 (196)
T 3lcm_A 158 VK 159 (196)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 46
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=99.85 E-value=1.4e-21 Score=155.56 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=90.4
Q ss_pred CCceEEEEEecCC--ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCC-----------------------
Q 028917 1 MATKIYIVYYSLY--GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAP----------------------- 55 (202)
Q Consensus 1 M~~kiliiy~S~~--G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~----------------------- 55 (202)
||||||||++|+. |+|.+|++.+++++++ .|.+|++++|.+.....|+.+..|.
T Consensus 1 ~MmkiLiI~gSpr~~s~t~~la~~~~~~l~~-~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (273)
T 1d4a_A 1 VGRRALIVLAHSERTSFNYAMKEAAAAALKK-KGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGH 79 (273)
T ss_dssp CCCEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeCCCCccHHHHHHHHHHHHHHh-CCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhccc
Confidence 4569999999985 7999999999999998 8999999999875322233333332
Q ss_pred CCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhh-hh--------hccCCCCceEEEEecCCC
Q 028917 56 PKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-WA--------SQALAGKPAGIFWSTGFH 120 (202)
Q Consensus 56 ~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~-~~--------~~~l~gK~~~~~~t~g~~ 120 (202)
.. +++. ...++|.+||+|||++|+||+++|+.||.|||++... |. .+.++||++.+++|+|+.
T Consensus 80 ~~-dd~~-~~~~~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg~ 151 (273)
T 1d4a_A 80 LS-PDIV-AEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGGS 151 (273)
T ss_dssp BC-HHHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSSC
T ss_pred Cc-HHHH-HHHHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCCC
Confidence 11 1222 1356799999999999999999999999999998542 11 246899999999998764
No 47
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=99.85 E-value=3.4e-21 Score=140.50 Aligned_cols=127 Identities=24% Similarity=0.279 Sum_probs=84.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC---CCcHH---HHhhcCCCCCCC-CCCc--CChhhhcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE---TLSSV---ILQKMKAPPKTN-DVPV--IRPHQLKE 71 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~---~~~~~---~~~~~~~~~~~~-~~~~--~~~~~l~~ 71 (202)
||+|++|+|+|++|||+++|+.|++++.. . + ++++.. .++.. +..........+ ..|+ ....++.+
T Consensus 2 M~~kilIvY~S~tGnT~~iA~~Ia~~l~~-~--~--~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~ 76 (151)
T 3edo_A 2 MAKKTLILYYSWSGETKKMAEKINSEIKD-S--E--LKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNN 76 (151)
T ss_dssp CCCCEEEEECCSSSHHHHHHHHHHHHSTT-C--E--EEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGG
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHhccC-C--C--EEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhh
Confidence 88899999999999999999999999854 2 2 333321 22311 111000000000 1111 13567999
Q ss_pred CCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 72 ADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 72 ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
||.||||+|+|+|++|+.++.|++++. .+.+|++++|+++||.. ..+...+.+.+. +..+.
T Consensus 77 ~d~iilG~P~~~g~~~~~~~~fl~~~~------~~~~k~~~~~t~gg~~~---g~~~~~l~~~~~--~~~~~ 137 (151)
T 3edo_A 77 YDLILIGSPVWSGYPATPIKTLLDQMK------NYRGEVASFFTSAGTNH---KAYVSHFNEWAD--GLNVI 137 (151)
T ss_dssp CSEEEEEEEEETTEECTHHHHHHHHTT------TCCSEEEEEEECSSCCH---HHHHHHHHHHTT--TSEEE
T ss_pred CCEEEEEcceecccccHHHHHHHHhch------hcCCEEEEEEEeCCCCC---CcHHHHHHHHcC--CCeee
Confidence 999999999999999999999999973 56788887777776632 244566666654 55555
No 48
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=99.85 E-value=2.9e-20 Score=142.03 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=98.4
Q ss_pred ceEEEEEecCC------ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeE
Q 028917 3 TKIYIVYYSLY------GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFL 76 (202)
Q Consensus 3 ~kiliiy~S~~------G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii 76 (202)
.|||||++||. ++|.+|++.+++++++ .|.+|++++|.+. +|+. ...+++.+||+||
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~-~g~~v~~~dL~~~---------------~d~~-~~~~~l~~AD~iV 75 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRD-LGHDVRIVRADSD---------------YDVK-AEVQNFLWADVVI 75 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHH-TTCEEEEEESSSC---------------CCHH-HHHHHHHHCSEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHH-cCCEEEEEeCCcc---------------ccHH-HHHHHHHhCCEEE
Confidence 48999999997 8999999999999998 7999999999862 2222 3578999999999
Q ss_pred EeccccCCcchHHHHHHHHhhhhh-hh-------------------hccCCCCceEEEEecCCCCC------------Ch
Q 028917 77 FGFPSRFGVMAAQCKAFFDATYEL-WA-------------------SQALAGKPAGIFWSTGFHGG------------GQ 124 (202)
Q Consensus 77 ~gsP~y~g~~~~~~k~fld~~~~~-~~-------------------~~~l~gK~~~~~~t~g~~~g------------~~ 124 (202)
|+||+||+++|+.||+|||++... |. ...++||++++++|+|++.+ ..
T Consensus 76 ~~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l~gK~~~~i~t~g~~~~~y~~~g~~~~~~~~ 155 (204)
T 2amj_A 76 WQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGV 155 (204)
T ss_dssp EEEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSCTTCEEEEEEECSSCTHHHHCTTSSSCSCCH
T ss_pred EECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCcccccCCCeEEEEEeCCCChHHHccCcccccCCCH
Confidence 999999999999999999997542 32 13579999999999876421 11
Q ss_pred HHHHHHHHHHHHHcCcEEec
Q 028917 125 ELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 125 ~~~l~~~~~~l~~~g~~vv~ 144 (202)
+..+..+...+...|+.+++
T Consensus 156 ~~~l~~l~~~l~~~G~~~~~ 175 (204)
T 2amj_A 156 DGVYLPFHKANQFLGMEPLP 175 (204)
T ss_dssp HHHTHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHHcCCeecc
Confidence 22333466677888998875
No 49
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=99.85 E-value=1.1e-20 Score=145.03 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=100.4
Q ss_pred CCceEEEEEecCC----ChHHHHHHHHHHHhhccC--CceEEEEEccCC-CcH---HHHhhc-----CCCCCC------C
Q 028917 1 MATKIYIVYYSLY----GHVETMAREVQRGANSVL--GVEATLWQVPET-LSS---VILQKM-----KAPPKT------N 59 (202)
Q Consensus 1 M~~kiliiy~S~~----G~T~~la~~i~~~~~~~~--g~~v~~~~l~~~-~~~---~~~~~~-----~~~~~~------~ 59 (202)
||+||++|++|+. ++|.+|++.+.+++++ . |.+|+++||.+. +|. +.+.+. .+...+ +
T Consensus 3 mM~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~-~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (211)
T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKE-AHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVA 81 (211)
T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHH-HCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred ccCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH-hCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHH
Confidence 7789999999976 6899999999999987 5 899999999874 341 111110 111100 1
Q ss_pred CCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhh-h--------hhccCCCCceEEEEecCCCCCCh-----H
Q 028917 60 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-W--------ASQALAGKPAGIFWSTGFHGGGQ-----E 125 (202)
Q Consensus 60 ~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~-~--------~~~~l~gK~~~~~~t~g~~~g~~-----~ 125 (202)
++. ...+++.+||+|||++|+||+++|+.+|+|||++... + ..+.|+||++.+++|+|+..++. +
T Consensus 82 ~~~-~~~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~ 160 (211)
T 3p0r_A 82 VAD-KYLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVE 160 (211)
T ss_dssp HHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGC
T ss_pred HHH-HHHHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchh
Confidence 122 2567899999999999999999999999999998532 1 01358999999999987764321 1
Q ss_pred HHHHHHHHHHHHcCcEEec
Q 028917 126 LTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 126 ~~l~~~~~~l~~~g~~vv~ 144 (202)
.....+...|...|+..+.
T Consensus 161 ~~~~~l~~~l~~~G~~~v~ 179 (211)
T 3p0r_A 161 MAVKYVASMMGFFGATNME 179 (211)
T ss_dssp BSHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHHHhCCCCeee
Confidence 1234555667777876553
No 50
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=99.84 E-value=1.1e-20 Score=139.60 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=105.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| |++|+|+|++|||+++|+.|++.+ |. ++++++.+. ...++.++|.||||+|
T Consensus 1 M~-k~~I~Y~S~tGnT~~~A~~ia~~l----g~-~~~~~~~~~---------------------~~~~l~~~d~ii~g~p 53 (164)
T 2bmv_A 1 MG-KIGIFFGTDSGNAEAIAEKISKAI----GN-AEVVDVAKA---------------------SKEQFNSFTKVILVAP 53 (164)
T ss_dssp -C-CEEEEECCSSSHHHHHHHHHHHHH----CS-EEEEEGGGC---------------------CHHHHTTCSEEEEEEE
T ss_pred CC-eEEEEEECCCchHHHHHHHHHHHc----CC-cEEEecccC---------------------CHhHHhhCCEEEEEEC
Confidence 55 999999999999999999999998 34 788888652 3456889999999999
Q ss_pred ccC-CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCC-CCC-hHHHHHHHHHHHHHcCcEEecCCCcCCCCccccc
Q 028917 81 SRF-GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFH-GGG-QELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMN 157 (202)
Q Consensus 81 ~y~-g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~-~g~-~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~ 157 (202)
||+ |.+|..++.|++.+.. ..+++|++++|+++... .++ ...++..+...|.. +.+++.....+..+..+.
T Consensus 54 t~~~g~~p~~~~~f~~~l~~----~~l~~k~~avf~~G~~~~y~~~~~~a~~~l~~~l~~--~~~~~~~~~~g~~~~~s~ 127 (164)
T 2bmv_A 54 TAGAGDLQTDWEDFLGTLEA----SDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTSTDGYHFEASK 127 (164)
T ss_dssp EETTTEECHHHHHHHTTCCT----HHHHTSEEEEEEECCTTTCTTSTTTHHHHHHHHHTT--SEECCCEESTTCCCSCCT
T ss_pred CcCCCcCcHHHHHHHHHHhh----hhcCCCEEEEEEeCCcchhhHHHhHHHHHHHHHHhh--CEEEccccCCCccccchh
Confidence 996 7788889999998742 25789999999984431 221 22456667777765 666653111111111111
Q ss_pred cccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHH
Q 028917 158 EVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
.+..+.+.+.. . + ..++++++.++++++++++.+.
T Consensus 128 ~~~~~~~~~l~-~--~-~~~~~~~~~~~~~~w~~~l~~~ 162 (164)
T 2bmv_A 128 AVEGGKFVGLV-I--D-EDNQDDLTDERISKWVEQVKGS 162 (164)
T ss_dssp TEETTEESSEE-E--C-TTTCGGGHHHHHHHHHHHHTTT
T ss_pred hhhcCcccCcc-C--C-CCCccccCHHHHHHHHHHHHHh
Confidence 11111111211 1 1 1234467899999999998653
No 51
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=99.84 E-value=4e-20 Score=137.47 Aligned_cols=125 Identities=15% Similarity=0.249 Sum_probs=87.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC--CcHH-------HHhhcCCCCCCCCCCc--CChhhhc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET--LSSV-------ILQKMKAPPKTNDVPV--IRPHQLK 70 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~--~~~~-------~~~~~~~~~~~~~~~~--~~~~~l~ 70 (202)
|||++|||+|.+|||+++|+.|++.+.. +++++.+. +|.. +.++.......+..|+ ....++.
T Consensus 13 ~mkilIvY~S~tGnT~~vA~~Ia~~l~~------d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~ 86 (171)
T 4ici_A 13 NSKILVAYFSATGTTARAAEKLGAAVGG------DLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIG 86 (171)
T ss_dssp CCCEEEEECCSSSHHHHHHHHHHHHHTC------EEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGG
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCC------CeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHh
Confidence 4599999999999999999999999954 45565542 2210 0000000000001111 1246789
Q ss_pred cCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 71 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
+||.||||+|+|+|++|+.++.|++++ .++||++++|+|+|+.+ ...++..+.+.+. +..+.
T Consensus 87 ~yD~iilg~Pvy~g~~~~~~~~fl~~~-------~l~gk~v~~f~t~g~~~--~g~a~~~l~~~l~--~~~~~ 148 (171)
T 4ici_A 87 TYDVVFIGYPIWWDLAPRIINTFIEGH-------SLKGKTVVPFATSGGSS--IGNSATVLKKTYP--DLNWK 148 (171)
T ss_dssp GCSEEEEEEECBTTBCCHHHHHHHHHS-------CCTTSEEEEEEECSSCC--SHHHHHHHHHHST--TSEEC
T ss_pred HCCEEEEecccccCCchHHHHHHHHHc-------CCCcCEEEEEEecCCCC--cchHHHHHHHHcC--CCeec
Confidence 999999999999999999999999987 68999999999998743 3456777777765 55554
No 52
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=99.82 E-value=1.1e-19 Score=139.48 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=99.2
Q ss_pred CceEEEEEecCC------ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCee
Q 028917 2 ATKIYIVYYSLY------GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGF 75 (202)
Q Consensus 2 ~~kiliiy~S~~------G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~i 75 (202)
|+||+||++|+. ++|.+|++.+++.+++ .|.+|++++|.+. +|+. ...+++.+||+|
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~-~g~ev~~~dL~~~---------------~Dv~-~~~~~l~~aD~i 87 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRE-SGHQVKITTVDQG---------------YDIE-SEIENYLWADTI 87 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHH-TTCCEEEEEGGGC---------------CCHH-HHHHHHHHCSEE
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhh-CCCEEEEEECCCc---------------cCHH-HHHHHHHhCCEE
Confidence 349999999984 5799999999999998 8999999999762 2222 257899999999
Q ss_pred EEeccccCCcchHHHHHHHHhhhhh-hh-------------------hccCCCCceEEEEecCCCC-----C-----C--
Q 028917 76 LFGFPSRFGVMAAQCKAFFDATYEL-WA-------------------SQALAGKPAGIFWSTGFHG-----G-----G-- 123 (202)
Q Consensus 76 i~gsP~y~g~~~~~~k~fld~~~~~-~~-------------------~~~l~gK~~~~~~t~g~~~-----g-----~-- 123 (202)
||++|+||+++|+.+|.|+|++... |. .+.|+||++.+++|+|.+. + +
T Consensus 88 v~~~P~y~~~~p~~lK~~iD~v~~~g~af~y~~~g~~~~~p~~~yG~~glL~gKk~~li~T~G~p~~~y~~~g~~~~g~~ 167 (218)
T 3rpe_A 88 IYQMPAWWMGEPWILKKYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVG 167 (218)
T ss_dssp EEEEECBTTBCCHHHHHHHHHHHHHTBTTTBCCCSCCSTTTTSCTTCCBSCTTCEEEEEEECSSCTHHHHCTTSTTTTCH
T ss_pred EEECChHhccCCHHHHHHHHHHHhcCcceeeccccccccccccccCCccCCCCCEEEEEEcCCCChHhhcccccccccCC
Confidence 9999999999999999999998543 21 1357999999999988751 1 1
Q ss_pred hHHHHHHHHHHHHHcCcEEecC
Q 028917 124 QELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 124 ~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
.+..+..+...+...|+.+++.
T Consensus 168 ~~~~l~p~~~~l~f~G~~~l~~ 189 (218)
T 3rpe_A 168 VDGVYLPFHKANQFLGMKPLPT 189 (218)
T ss_dssp HHHHTHHHHHHHHHTTCEECCC
T ss_pred HHHHHHHHHHHHHhCCCEEece
Confidence 1223344566778889988863
No 53
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=99.82 E-value=3.2e-20 Score=140.21 Aligned_cols=144 Identities=16% Similarity=0.062 Sum_probs=110.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+|++|+|+|++|||+++|+.|++++.+ .|++++++++.+. ..++.++|.|||++|||
T Consensus 22 ~kv~IvY~S~tGnTe~~A~~ia~~l~~-~g~~v~v~~l~~~----------------------~~~l~~~d~vi~g~~Ty 78 (191)
T 1bvy_F 22 TPLLVLYGSNMGTAEGTARDLADIAMS-KGFAPQVATLDSH----------------------AGNLPREGAVLIVTASY 78 (191)
T ss_dssp CCEEEEEECSSSHHHHHHHHHHHHHHT-TTCCCEEEEGGGS----------------------TTCCCSSSEEEEEECCB
T ss_pred CeEEEEEECCChHHHHHHHHHHHHHHh-CCCceEEeeHHHh----------------------hhhhhhCCeEEEEEeec
Confidence 489999999999999999999999998 8999999998752 23577899999999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCC-ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG-GQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKG 161 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g-~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~ 161 (202)
+|.+|..++.|++.+.... ...|+||++++|+++....+ ....+...+...|...|+.++.....
T Consensus 79 ~G~~p~~~~~fl~~L~~~~-~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~~~~------------- 144 (191)
T 1bvy_F 79 NGHPPDNAKQFVDWLDQAS-ADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIADRGE------------- 144 (191)
T ss_dssp TTBCCTTTHHHHHHHHTCC-SSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEEEEE-------------
T ss_pred CCCcCHHHHHHHHHHHhcc-chhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeeccEE-------------
Confidence 9999999999999985311 12488999999997643222 22346778888898888876642111
Q ss_pred cccccceeecCCCCCCCCHHHHHH-HHHHhHHHHHHHH
Q 028917 162 GSSYGAGTFAADGSRQPTDLELQQ-AFHQGKYVAEIAK 198 (202)
Q Consensus 162 ~~~~g~~~~~~~~~~~p~e~~~~~-a~~~g~~l~~~~~ 198 (202)
. + . +++++. +++++++|.+.+.
T Consensus 145 --------~--d--~---~~d~e~~~~~w~~~l~~~l~ 167 (191)
T 1bvy_F 145 --------A--D--A---SDDFEGTYEEWREHMWSDVA 167 (191)
T ss_dssp --------E--E--T---TSCHHHHHHHHHHHHHHHHH
T ss_pred --------E--e--c---CCChHHHHHHHHHHHHHHhc
Confidence 0 1 1 246666 8999999888775
No 54
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=99.81 E-value=7.3e-19 Score=135.92 Aligned_cols=172 Identities=10% Similarity=0.046 Sum_probs=116.8
Q ss_pred CceEEEEEecCC-----ChHHHHHHHHHHHhhcc-CCc-eEEEEEccCC-CcH---HHHhhcC-----CCCCC------C
Q 028917 2 ATKIYIVYYSLY-----GHVETMAREVQRGANSV-LGV-EATLWQVPET-LSS---VILQKMK-----APPKT------N 59 (202)
Q Consensus 2 ~~kiliiy~S~~-----G~T~~la~~i~~~~~~~-~g~-~v~~~~l~~~-~~~---~~~~~~~-----~~~~~------~ 59 (202)
||||++|++|+. ++|.+|++.+++++++. .|. +|+++||.+. +|. +|..+.. +...+ +
T Consensus 4 MmkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d 83 (223)
T 3u7i_A 4 MNKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTE 83 (223)
T ss_dssp CCEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred cCEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHH
Confidence 459999999975 78999999999999872 257 9999999874 342 2332211 11110 1
Q ss_pred CCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhh---hh------hccC-CCCceEEEEecCCCCCC--h---
Q 028917 60 DVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL---WA------SQAL-AGKPAGIFWSTGFHGGG--Q--- 124 (202)
Q Consensus 60 ~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~---~~------~~~l-~gK~~~~~~t~g~~~g~--~--- 124 (202)
++. ...+++.+||+|||++|+||+++|+.+|+|||++... +. .+.+ +||++.+++|+|+..++ .
T Consensus 84 ~~~-~l~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~~~ 162 (223)
T 3u7i_A 84 RMS-EILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWYTD 162 (223)
T ss_dssp HHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHHHH
T ss_pred HHH-HHHHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCccch
Confidence 111 2478899999999999999999999999999998642 11 1246 89999999998875432 1
Q ss_pred -HHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHH
Q 028917 125 -ELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIA 197 (202)
Q Consensus 125 -~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~ 197 (202)
+.....+...|...|+..+..-.. .+. ...+.++-+++|++-++++++..
T Consensus 163 ~~~~~~~l~~~l~~~G~~~~~~i~~----------------------~g~-~~~~~~~~~~~a~~~~~~~~~~f 213 (223)
T 3u7i_A 163 VEYSHKYLKAMFNFLGIEDYQIVRA----------------------QGT-AVLDPTEVLQNAYKEVEEAASRL 213 (223)
T ss_dssp TCHHHHHHHHHHHHHTCCEEEEEEE----------------------CCT-TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCceeEEEEE----------------------cCc-cCCCHHHHHHHHHHHHHHHHHHH
Confidence 123455667777889887752111 110 01245677778777777776654
No 55
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=99.81 E-value=4e-20 Score=143.48 Aligned_cols=115 Identities=20% Similarity=0.185 Sum_probs=87.8
Q ss_pred ceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc-----------------------CCCCC
Q 028917 3 TKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKM-----------------------KAPPK 57 (202)
Q Consensus 3 ~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~-----------------------~~~~~ 57 (202)
|||+||++|+ .++|.+|++.+++++++ .|.+|+++||.+.....|..+. .|...
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~-~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 80 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSR-QGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLA 80 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHH-HTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBC
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCc
Confidence 4999999998 47899999999999998 7999999999874221122111 01111
Q ss_pred CCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhh-h--------hhccCCCCceEEEEecCCC
Q 028917 58 TNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-W--------ASQALAGKPAGIFWSTGFH 120 (202)
Q Consensus 58 ~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~-~--------~~~~l~gK~~~~~~t~g~~ 120 (202)
+|+. ...+++.+||+|||++|+||+++|+.||+|||++... + ..+.|+||++.+++|+|++
T Consensus 81 -dd~~-~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~~ 150 (228)
T 3tem_A 81 -SDIT-DEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGGT 150 (228)
T ss_dssp -HHHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSSC
T ss_pred -HHHH-HHHHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCCC
Confidence 2232 2467899999999999999999999999999998532 1 1246899999999998764
No 56
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=99.78 E-value=2.7e-19 Score=142.19 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=87.9
Q ss_pred CceEEEEEecCC--ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCC---------------------C
Q 028917 2 ATKIYIVYYSLY--GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPK---------------------T 58 (202)
Q Consensus 2 ~~kiliiy~S~~--G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~---------------------~ 58 (202)
+||||||++||+ ++|..|++.+.+++++ .|.+|+++||.+..++.|+.+..|... +
T Consensus 22 ~MKiLII~aHP~~~S~n~aL~~~~~~~l~~-~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (280)
T 4gi5_A 22 SMKVLLIYAHPEPRSLNGALKNFAIRHLQQ-AGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQS 100 (280)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHH-TTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSC
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHHH-CCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCc
Confidence 459999999984 7899999999999999 899999999987533333322211110 0
Q ss_pred CCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhh-hh----------------hccCCCCceEEEEecCCC
Q 028917 59 NDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYEL-WA----------------SQALAGKPAGIFWSTGFH 120 (202)
Q Consensus 59 ~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~-~~----------------~~~l~gK~~~~~~t~g~~ 120 (202)
+|+. ...+.+.+||.|||++|+||+++|+.||.|+|++... |. .+.|+||++.+++|+|++
T Consensus 101 ~dv~-~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~~g~ay~~~~~~~~~~~~~~~~g~l~gKk~~l~~T~g~~ 178 (280)
T 4gi5_A 101 ADIV-AEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYAWGFAYGVGEHSDRHWGDRYGEGTFVGKRAMLIVTAGGW 178 (280)
T ss_dssp HHHH-HHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSCSCBSSSCBSSCSSCSTTTTCEEEEEEECSSC
T ss_pred HHHH-HHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhcccCceeccCCccccccccccCccccCCCEEEEEEecCCC
Confidence 1222 1356799999999999999999999999999998421 11 135789999999998864
No 57
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=99.74 E-value=6.4e-18 Score=126.00 Aligned_cols=120 Identities=20% Similarity=0.242 Sum_probs=90.9
Q ss_pred eEEEEEecCC---ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 4 KIYIVYYSLY---GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 4 kiliiy~S~~---G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
||+||++||. +.+.++++.+++.+. +|++++|.+. +|+. ...+++.+||.|||++|
T Consensus 2 kiLii~ghP~~~~S~~~~~l~~~~~~~~-----~v~v~dL~~~---------------~D~~-~~~~~l~~aD~iV~~~P 60 (177)
T 3ha2_A 2 QTLIIVAHPELARSNTQPFFKAAIENFS-----NVTWHPLVAD---------------FNVE-QEQSLLLQNDRIILEFP 60 (177)
T ss_dssp CEEEEECCTTTTTCSSHHHHHHHHTTCT-----TEEEEECCTT---------------CCHH-HHHHHHHTCSEEEEEEE
T ss_pred eEEEEEcCCCcccCHHHHHHHHHHhcCC-----CEEEEECCCc---------------ccHH-HHHHHHHhCCEEEEECC
Confidence 8999999995 567777776666653 5899999862 2333 25789999999999999
Q ss_pred ccCCcchHHHHHHHHhhhhh-hh---hccCCCCceEEEEecCCCC-----C-----ChHHHHHHHHHHHHHcCcEEec
Q 028917 81 SRFGVMAAQCKAFFDATYEL-WA---SQALAGKPAGIFWSTGFHG-----G-----GQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~-~~---~~~l~gK~~~~~~t~g~~~-----g-----~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
+||+++|+.+|.|+|++... |. .+.|+||++.+++|+|++. + ..+..+..+...+...|+.+++
T Consensus 61 ~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~ 138 (177)
T 3ha2_A 61 LYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLP 138 (177)
T ss_dssp CBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECC
T ss_pred hhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeC
Confidence 99999999999999997532 21 2468999999999988651 1 1234455566677888998886
No 58
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=99.72 E-value=1.2e-17 Score=139.97 Aligned_cols=160 Identities=18% Similarity=0.166 Sum_probs=111.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
|||+||++||..++..+.+.+++.+.+ ..++++++|.+..|. .++|+. ...+.+.+||+|||++|+|
T Consensus 237 mkiLvi~gspr~~ss~~n~~l~~~~~~--~~~v~v~dL~~~~p~----------~~~d~~-~~~~~l~~aD~iv~~~P~y 303 (413)
T 3l9w_A 237 GMILIIYAHPYPHHSHANKRMLEQART--LEGVEIRSLYQLYPD----------FNIDIA-AEQEALSRADLIVWQHPMQ 303 (413)
T ss_dssp CCEEEEECCSCGGGCSHHHHHHHHHHT--SSSEEEEEHHHHCTT----------SCCCHH-HHHHHHHTCSEEEEEEECB
T ss_pred CCEEEEEECCCcchHHHHHHHHHHHhc--CCCEEEEEchhhCCC----------CcHHHH-HHHHHHHhCCEEEEECchh
Confidence 599999999976655577777777765 357899998653331 013333 2478999999999999999
Q ss_pred CCcchHHHHHHHHhhhhh-hh----hccCCCCceEEEEecCCCCC--------ChHHHHHHHHHHHHHcCcEEecCCCcC
Q 028917 83 FGVMAAQCKAFFDATYEL-WA----SQALAGKPAGIFWSTGFHGG--------GQELTALTAVTQLAHHGMLFVPLGYTF 149 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~-~~----~~~l~gK~~~~~~t~g~~~g--------~~~~~l~~~~~~l~~~g~~vv~~~~~~ 149 (202)
|+++|+.||.|||++... |. ...|+||++.+++|+|++.+ +.+..+..+...+...||.+++.-+.
T Consensus 304 w~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~~~~~y~~~~~~~~~~~l~~l~~~~~~~G~~~l~~~~~- 382 (413)
T 3l9w_A 304 WYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAM- 382 (413)
T ss_dssp TTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSSCGGGGCCSSSCSGGGGGHHHHHHHHHTTCEECCCEEE-
T ss_pred hccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCCChHhhCCCCccCchHHHHHHHHHHHhCCCeecceEEE-
Confidence 999999999999998532 11 12589999999988876421 11223456666778889998863221
Q ss_pred CCCccccccccCcccccceeecCCCCCCC-CHHHHHHHHHHhHHHHHHHHH
Q 028917 150 GSGMFEMNEVKGGSSYGAGTFAADGSRQP-TDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 150 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~p-~e~~~~~a~~~g~~l~~~~~~ 199 (202)
+|. ..+ +++-.+.+.++.++|.+.+.+
T Consensus 383 ---------------~g~--------~~~~d~~~~~~~~~~~~~L~~~~~~ 410 (413)
T 3l9w_A 383 ---------------HCT--------FICDDETLEGQARHYKQRLLEWQEA 410 (413)
T ss_dssp ---------------CCS--------TTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------cCC--------CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 111 223 345567788888888888764
No 59
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=99.69 E-value=9.8e-16 Score=117.40 Aligned_cols=117 Identities=13% Similarity=0.036 Sum_probs=94.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
++++|+|+|.+|||+.+|+.|++.+. .|++++++++.++ ...++.+++.+||++|||
T Consensus 41 ~kv~IlYgS~tGnte~~A~~La~~l~--~g~~v~v~~l~~~---------------------~~~~l~~~~~vI~~tsTy 97 (219)
T 3hr4_A 41 VRVTILFATETGKSEALAWDLGALFS--CAFNPKVVCMDKY---------------------RLSCLEEERLLLVVTSTF 97 (219)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHT--TTSEEEEEEGGGC---------------------CGGGGGTCSEEEEEEECB
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHH--cCCCeEEEEcccC---------------------CHhHhccCCeEEEEEecc
Confidence 47999999999999999999999984 6889999998763 245678999999999999
Q ss_pred -CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 83 -FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 83 -~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
.|.+|..++.|++.+... ...++|+++++|+.+.+.....-.+...+...|...|+..+.
T Consensus 98 G~Ge~Pdna~~F~~~L~~~--~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~ 158 (219)
T 3hr4_A 98 GNGDCPGNGEKLKKSLFML--KELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLT 158 (219)
T ss_dssp TTTBCCGGGHHHHHHHHHC--CCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESS
T ss_pred CCCcCCHHHHHHHHHHHhc--chhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEee
Confidence 799999999999988531 124789999999986544333335567778888888998774
No 60
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.67 E-value=7.3e-16 Score=136.45 Aligned_cols=148 Identities=14% Similarity=0.020 Sum_probs=115.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhh-ccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccC-CeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGAN-SVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEA-DGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~-~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-d~ii~gsP 80 (202)
+|++|+|+|.+|||+++|+.|++.+. + .|++++++++.++ ...++.++ |.|||++|
T Consensus 50 ~ki~IlY~S~tGnte~~A~~ia~~l~~~-~g~~v~v~~l~~~---------------------~~~~l~~~~~~vi~~~s 107 (682)
T 2bpo_A 50 KNYLVLYASQTGTAEGFAKAFSKELVAK-FNLNVMCADVENY---------------------DFESLNDVPVIVSIFIS 107 (682)
T ss_dssp CSEEEEEECSSSHHHHHHHHHHHHHHHH-HCCCEEEEETTSS---------------------CGGGGGGCCSEEEEEEE
T ss_pred CeEEEEEECCchHHHHHHHHHHHHhHHh-cCCceEEeehHHC---------------------CHHHHhhcCCeEEEEeC
Confidence 48999999999999999999999998 7 7999999999763 34567788 99999999
Q ss_pred cc-CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccc
Q 028917 81 SR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEV 159 (202)
Q Consensus 81 ~y-~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~ 159 (202)
|| .|.+|..++.|++.+.... ...|+||++++|+++....+....+...+.+.|...|+..+.....
T Consensus 108 T~G~G~~p~~~~~F~~~l~~~~-~~~L~~~~~avfGlGds~Y~~f~~a~k~l~~~L~~lGa~~l~~~~~----------- 175 (682)
T 2bpo_A 108 TYGEGDFPDGAVNFEDFICNAE-AGALSNLRYNMFGLGNSTYEFFNGAAKKAEKHLSAAGAIRLGKLGE----------- 175 (682)
T ss_dssp CBTTTBCCSSCHHHHHHHHTCC-TTSSTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSCCEE-----------
T ss_pred ccCCCCCCHHHHHHHHHHHhcc-chhccCCEEEEEecCCCCchhHhHHHHHHHHHHHHCCCeEeECcEE-----------
Confidence 99 8999999999999986421 1248999999999754433444456778888999999988753221
Q ss_pred cCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 160 KGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
. | ..+ ++..+.+.+++++|.+.+.+
T Consensus 176 ----------~--D--~~~-~~~~~~~~~W~~~l~~~l~~ 200 (682)
T 2bpo_A 176 ----------A--D--DGA-GTTDEDYMAWKDSILEVLKD 200 (682)
T ss_dssp ----------E--E--TTT-TCHHHHHHHHHHHHHHHHHH
T ss_pred ----------E--e--cCC-cccHHHHHHHHHHHHHHHHh
Confidence 0 1 123 45678889999998877654
No 61
>2xod_A NRDI protein, NRDI; flavoprotein, redox protein, ribonucleotide reductase; HET: FMN; 0.96A {Bacillus anthracis} PDB: 2xoe_A* 2x2o_A* 2x2p_A*
Probab=99.55 E-value=1.8e-14 Score=100.57 Aligned_cols=115 Identities=16% Similarity=0.189 Sum_probs=78.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC-
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF- 83 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~- 83 (202)
++|+|+|++|||+++|+.|+ + .| + ++.+ +.+ ++|.|||++|||+
T Consensus 1 ~~I~Y~S~tGnT~~~A~~ia--~---~~--~---~i~~------------------------~~~-~~~~ii~g~pt~~~ 45 (119)
T 2xod_A 1 MLVAYDSMTGNVKRFIHKLN--M---PA--V---QIGE------------------------DLV-IDEDFILITYTTGF 45 (119)
T ss_dssp CEEEECCSSSHHHHHHHHHT--S---CE--E---ECCT------------------------TCC-CCSCEEEEECCBTT
T ss_pred CEEEEECCChhHHHHHHHhc--c---cC--C---CcCc------------------------ccc-cCCCEEEEEeecCC
Confidence 47999999999999999998 3 23 2 2311 112 4999999999995
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCC-hHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCc
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGG-QELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGG 162 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~-~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~ 162 (202)
|.+|..++.|++. +++|.+++|++++...+. ...+...+.+.+. . ...+.
T Consensus 46 g~~p~~~~~fl~~---------~~~~~~~v~g~G~~~y~~~~~~~~~~l~~~~~---~---~~~~~-------------- 96 (119)
T 2xod_A 46 GNVPERVLEFLER---------NNEKLKGVSASGNRNWGDMFGASADKISAKYE---V---PIVSK-------------- 96 (119)
T ss_dssp TBCCHHHHHHHHH---------HGGGEEEEEEEECGGGGGGTTHHHHHHHHHHT---C---CEEEE--------------
T ss_pred CcCCHHHHHHHHH---------cCCCEEEEEEeCCChHHHHHHHHHHHHHHHhC---C---ccEEE--------------
Confidence 9999999999975 357889999885432221 1233444444432 1 00010
Q ss_pred ccccceeecCCCCCCCCHHHHHHHHHHhHHHH
Q 028917 163 SSYGAGTFAADGSRQPTDLELQQAFHQGKYVA 194 (202)
Q Consensus 163 ~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~ 194 (202)
+ ..+|+++|++++++++++++
T Consensus 97 -------~----~~~~~~~d~~~~~~~~~~i~ 117 (119)
T 2xod_A 97 -------F----ELSGTNNDVEYFKERVREIA 117 (119)
T ss_dssp -------E----ETTCCHHHHHHHHHHHHHHT
T ss_pred -------E----ecCCCHHHHHHHHHHHHHhc
Confidence 1 14689999999999999885
No 62
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.50 E-value=4.2e-13 Score=117.64 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=94.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhc--cCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLK--EADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ad~ii~gsP 80 (202)
++|+|+|+|.+|||+.+|+.|++.+++ .|++++++++.++... ....+. +++.+||++|
T Consensus 19 ~~i~I~YgS~tGnte~~A~~la~~l~~-~g~~~~v~~~~~~~~~------------------~l~~~~~~~~~~vi~~~s 79 (618)
T 3qe2_A 19 RNIIVFYGSQTGTAEEFANRLSKDAHR-YGMRGMSADPEEYDLA------------------DLSSLPEIDNALVVFCMA 79 (618)
T ss_dssp CSEEEEEECSSSHHHHHHHHHHHHGGG-GTCCEEEECGGGSCGG------------------GGGGGGGSTTCEEEEEEE
T ss_pred CeEEEEEECChhHHHHHHHHHHHHHHh-CCCceEEechHHcCHH------------------HhhhcccccCcEEEEEcC
Confidence 479999999999999999999999998 8999999888764211 111222 6899999999
Q ss_pred cc-CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 81 SR-FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 81 ~y-~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
|| .|.+|..++.|++.+... ...|+|+++++|+.+.+..+....+...+.+.|...|...+.
T Consensus 80 T~G~G~~pd~~~~F~~~L~~~--~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~ 142 (618)
T 3qe2_A 80 TYGEGDPTDNAQDFYDWLQET--DVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIF 142 (618)
T ss_dssp CBGGGBCCGGGHHHHHHHHHC--CCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESS
T ss_pred ccCCCCCCHHHHHHHHHHhhc--cccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEee
Confidence 99 899999999999998531 136899999999965443333334566777788888988774
No 63
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.44 E-value=3.2e-12 Score=113.25 Aligned_cols=146 Identities=16% Similarity=-0.035 Sum_probs=108.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR- 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y- 82 (202)
|++|+|+|.+|||+.+|+.+++.+. .|++++++++.++ ...++..++.|||++|||
T Consensus 13 k~~IlY~S~TG~te~~A~~l~~~l~--~~~~~~v~~m~~~---------------------d~~~l~~~~~vl~vtsT~G 69 (688)
T 1tll_A 13 KATILYATETGKSQAYAKTLCEIFK--HAFDAKAMSMEEY---------------------DIVHLEHEALVLVVTSTFG 69 (688)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHT--TTSEEEEEETTTS---------------------CTTSGGGCSEEEEEECCBT
T ss_pred eEEEEEECCchHHHHHHHHHHHHHh--cCCCcEEeecccC---------------------ChhHhccCceEEEEEcccC
Confidence 7999999999999999999999996 5889999998763 234567899999999999
Q ss_pred CCcchHHHHHHHHhhhhhhh----------------------------------------hccCCCCceEEEEecCCCCC
Q 028917 83 FGVMAAQCKAFFDATYELWA----------------------------------------SQALAGKPAGIFWSTGFHGG 122 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~----------------------------------------~~~l~gK~~~~~~t~g~~~g 122 (202)
+|.+|..+..|++.+..... ...|.|+++++|+.+.+...
T Consensus 70 ~Gdpp~n~~~F~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~L~~~~~aVfGlGds~Y~ 149 (688)
T 1tll_A 70 NGDPPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGPLANVRFSVFGLGSRAYP 149 (688)
T ss_dssp TTBCCGGGHHHHHHHHHHTC-----CCCCCHHHHTSCCC----------------------CTTTTCEEEEEEEECTTSS
T ss_pred CCcCCHHHHHHHHHHHhccCCccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEeeccCchH
Confidence 89999999999999864310 12478999999997643333
Q ss_pred ChHHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q 028917 123 GQELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 123 ~~~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~~~~ 199 (202)
..-.....+.+.|...|...+..... .|. . ..+.+.++.+.+.+.+.+.+
T Consensus 150 ~F~~~~k~ld~~L~~lGa~rl~~~~~-----------------------~D~--~--~g~e~~f~~W~~~~~~~l~~ 199 (688)
T 1tll_A 150 HFCAFGHAVDTLLEELGGERILKMRE-----------------------GDE--L--CGQEEAFRTWAKKVFKAACD 199 (688)
T ss_dssp STTHHHHHHHHHHHHTTCEESSCCEE-----------------------EET--T--TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCceeeccee-----------------------ecc--C--CCcHHHHHHHHHHHHHHHHH
Confidence 23345677778888889887742111 011 1 13556788888888877654
No 64
>1rlj_A NRDI protein; flavoprotein, FMN, thioredoxin, alpha/beta/alpha sandwich, structural genomics, PSI, protein structure initiative; HET: FMN; 2.00A {Bacillus subtilis} SCOP: c.23.5.7
Probab=99.17 E-value=3.2e-11 Score=86.18 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=76.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR- 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y- 82 (202)
+++|+|+|.+|||+.+|+.|++. . .+++.+ .+...|.+||++|||
T Consensus 10 ~i~I~Y~S~TGNt~~vA~~l~~~-------~--~~~i~~-------------------------~~~~~~~~ilv~pTyG 55 (139)
T 1rlj_A 10 MVQIIFDSKTGNVQRFVNKTGFQ-------Q--IRKVDE-------------------------MDHVDTPFVLVTYTTN 55 (139)
T ss_dssp CCEEEECCSSSHHHHHHTTSCCS-------E--EEETTS-------------------------CSCCCSCEEEEECCBG
T ss_pred EEEEEEECCChhHHHHHHHhccc-------c--ceEecc-------------------------ccccCCCEEEEEcCcC
Confidence 68999999999999999887421 0 223321 244568899999999
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCCh-HHHHHHHHHHHHHcCcEEecCCCcCCCCccccccccC
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQ-ELTALTAVTQLAHHGMLFVPLGYTFGSGMFEMNEVKG 161 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~-~~~l~~~~~~l~~~g~~vv~~~~~~~~~~~~~~~~~~ 161 (202)
.|.+|..+..|++.. +++..++++++....|.. -.+...+. ...+..+.. .
T Consensus 56 ~G~~P~~v~~Fl~~~---------~~~~~~V~g~Gd~~yg~~f~~a~~~i~---~~~~~~~~~-~--------------- 107 (139)
T 1rlj_A 56 FGQVPASTQSFLEKY---------AHLLLGVAASGNKVWGDNFAKSADTIS---RQYQVPILH-K--------------- 107 (139)
T ss_dssp GGBCCHHHHHHHHHH---------GGGEEEEEEEECGGGGGGTTHHHHHHH---HHHTCCEEE-E---------------
T ss_pred CCcCcHHHHHHHHhC---------CCCEEEEEecCCCcHHHHHHHHHHHHH---HHcCCCCcc-e---------------
Confidence 699999999999643 245677777655422221 12222222 333443321 0
Q ss_pred cccccceeecCCCCCCCCHHHHHHHHHHhHHHHHH
Q 028917 162 GSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAEI 196 (202)
Q Consensus 162 ~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~~ 196 (202)
+. ..++++|.++++++.+++.+.
T Consensus 108 --------~e----l~g~~~D~~~~~~~~~~~~~~ 130 (139)
T 1rlj_A 108 --------FE----LSGTSKDVELFTQEVERVVTK 130 (139)
T ss_dssp --------EE----TTCCHHHHHHHHHHHHHHHHH
T ss_pred --------EE----EcCCHHHHHHHHHHHHHHHHH
Confidence 11 247789999999999888753
No 65
>3n3a_C Protein NRDI; ribonucleotide reductase, four-helix bundle, dimanganese CLU flavoprotein, oxidoreductase; HET: FMN; 1.99A {Escherichia coli} PDB: 3n39_C* 3n3b_C*
Probab=98.96 E-value=2e-09 Score=77.29 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=58.1
Q ss_pred hccCCeeEEeccccC-----CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCCh-HHHHHHHHHHHHHcCcEE
Q 028917 69 LKEADGFLFGFPSRF-----GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQ-ELTALTAVTQLAHHGMLF 142 (202)
Q Consensus 69 l~~ad~ii~gsP~y~-----g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~-~~~l~~~~~~l~~~g~~v 142 (202)
+...+-+|+++|||. |.+|..+..|++... .+++..++++++....|.. -.+.+.+.+.+ +.
T Consensus 56 ~~~~ep~vlv~PTYg~g~~~G~vP~~v~dFl~~~~-------n~~~~~gVigsGN~nfg~~Fc~A~d~ia~k~---~v-- 123 (153)
T 3n3a_C 56 IQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEH-------NRALLRGVIASGNRNFGEAYGRAGDVIARKC---GV-- 123 (153)
T ss_dssp CCCCSCEEEEEECCTTSSSSSSSCHHHHHHHTSHH-------HHHHEEEEEEEECGGGGGGTTHHHHHHHHHH---TC--
T ss_pred cccCCCEEEEEeccCCCCcCCcCcHHHHHHHhhhc-------ccCcEEEEEecCCCchhHHHHHHHHHHHHHh---CC--
Confidence 456789999999997 999999999998652 2345577777654322221 23444444443 32
Q ss_pred ecCCCcCCCCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHHH
Q 028917 143 VPLGYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVAE 195 (202)
Q Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~~ 195 (202)
|.-+. | +..++++|+++++++.+++.+
T Consensus 124 -P~l~k---------------------f----EL~Gt~eDv~~v~~~~~~~~~ 150 (153)
T 3n3a_C 124 -PWLYR---------------------F----ELMGTQSDIENVRKGVTEFWQ 150 (153)
T ss_dssp -CEEEE---------------------E----ETTCCHHHHHHHHHHHHHHHH
T ss_pred -CeEEE---------------------E----eCCCCHHHHHHHHHHHHHHHh
Confidence 11011 1 146889999999999988765
No 66
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=97.52 E-value=0.00034 Score=47.28 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=59.8
Q ss_pred CCceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 1 MATKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 1 M~~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
|||||+.|...|+| +|...++.+.+..++ .|+++.+-.=...-.. + + ...+++.+||.|||+
T Consensus 4 m~mkIvaVTaCptGiAHTyMAAeaL~~aA~~-~G~~ikVEtqGs~G~~------------n--~-Lt~~~I~~Ad~VIiA 67 (111)
T 2kyr_A 4 MSKKLIALCACPMGLAHTFMAAQALEEAAVE-AGYEVKIETQGADGIQ------------N--R-LTAQDIAEATIIIHS 67 (111)
T ss_dssp CCCEEEEEEEESSCHHHHHHHHHHHHHHHHH-TSSEEEEEEEETTEEE------------S--C-CCHHHHHHCSEEEEE
T ss_pred ccccEEEEEcCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCCCcC------------C--C-CCHHHHHhCCEEEEE
Confidence 78899999999998 789999999999998 8988765332211000 0 1 246899999999999
Q ss_pred ccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 79 FPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 79 sP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
+-+-- +.. .+|.||++.-..+.
T Consensus 68 ~d~~v-----------~~~------~RF~GK~v~~~~v~ 89 (111)
T 2kyr_A 68 VAVTP-----------EDN------ERFESRDVYEITLQ 89 (111)
T ss_dssp ESSCC-----------TTG------GGGTTSCEEEEETT
T ss_pred eCCCc-----------Cch------hhcCCCeEEEeCHH
Confidence 87641 111 36789998666553
No 67
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=97.48 E-value=0.00035 Score=46.85 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCC-CcCChhhhccCCeeEE
Q 028917 1 MATKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDV-PVIRPHQLKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ad~ii~ 77 (202)
|+|||++|-.-|+| ||...++.+.+..++ .|+++.+-.-... +. .....+++.+||.||+
T Consensus 1 m~mkivaVtaCptGiAhTymAAeaLekaA~~-~G~~ikVEtqgs~----------------g~~n~Lt~~~I~~AD~VIi 63 (106)
T 2m1z_A 1 MKRKIIAVTACATGVAHTYMAAQALKKGAKK-MGNLIKVETQGAT----------------GIENELTEKDVNIGEVVIF 63 (106)
T ss_dssp CCCEEEEEEECSSCHHHHHHHHHHHHHHHHH-HTCEEEEEEEETT----------------EESSCCCHHHHHHCSEEEE
T ss_pred CCccEEEEEECCCcHHHHHHHHHHHHHHHHH-CCCEEEEEEecCc----------------cccCCCCHHHHhhCCEEEE
Confidence 76799999888888 788889999999998 8987765433221 00 0024688999999999
Q ss_pred eccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 78 GFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
++.+-. +.. .+|.||++.-+.+
T Consensus 64 a~d~~v-----------~~~------~RF~gk~v~~~~v 85 (106)
T 2m1z_A 64 AVDTKV-----------RNK------ERFDGKVVLEVPV 85 (106)
T ss_dssp EESSCC-----------STH------HHHTTSEEEEECT
T ss_pred eccccc-----------cch------hccCCCcEEEEcH
Confidence 988643 111 2467998766554
No 68
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=97.02 E-value=0.0022 Score=43.57 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=43.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
++||+++.+|.-|.+..++..+.+.+++ .|+++++....- .+ ....+.++|.||.+.|+
T Consensus 21 ~kkIlvvC~sG~gTS~ll~~kl~~~~~~-~gi~~~V~~~~~----------------~~----~~~~~~~~DlIist~~l 79 (113)
T 1tvm_A 21 KRKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRV----------------NE----IETYMDGVHLICTTARV 79 (113)
T ss_dssp SEEEEEESCSCSSHHHHHHHHHHHHHHH-TTCCEEEEEECT----------------TT----TTTSTTSCSEEEESSCC
T ss_pred ccEEEEECCCCHHHHHHHHHHHHHHHHH-cCCeEEEEEecH----------------HH----HhhccCCCCEEEECCcc
Confidence 3489999999999999999999999998 787654433221 01 12235689988888776
Q ss_pred c
Q 028917 82 R 82 (202)
Q Consensus 82 y 82 (202)
-
T Consensus 80 ~ 80 (113)
T 1tvm_A 80 D 80 (113)
T ss_dssp C
T ss_pred c
Confidence 5
No 69
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=96.90 E-value=0.0028 Score=42.56 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=41.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+||+++.++.-+.+ .+++.+.+.+++ .|+++++....-. .....+.++|.|+++..
T Consensus 3 mkkIll~Cg~G~sTS-~l~~k~~~~~~~-~gi~~~i~a~~~~--------------------~~~~~~~~~Dvil~~pq 59 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTS-LLVSKMRAQAEK-YEVPVIIEAFPET--------------------LAGEKGQNADVVLLGPQ 59 (106)
T ss_dssp CEEEEEECSSSTTTH-HHHHHHHHHHHH-SCCSEEEEEECSS--------------------STTHHHHHCSEEEECTT
T ss_pred CcEEEEECCCchhHH-HHHHHHHHHHHH-CCCCeEEEEecHH--------------------HHHhhccCCCEEEEccc
Confidence 347999998877666 899999999999 8988776554321 23455788997776643
No 70
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=96.19 E-value=0.0055 Score=41.24 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=41.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
+||+++.+|.-|++ .+++.+.+.+++ .|+++++....-. .....+.++|.|+.+.++
T Consensus 5 mkIlvvC~~G~~TS-ll~~kl~~~~~~-~gi~~~i~~~~~~--------------------~~~~~~~~~D~Ii~t~~l 61 (109)
T 2l2q_A 5 MNILLVCGAGMSTS-MLVQRIEKYAKS-KNINATIEAIAET--------------------RLSEVVDRFDVVLLAPQS 61 (109)
T ss_dssp EEEEEESSSSCSSC-HHHHHHHHHHHH-HTCSEEEEEECST--------------------THHHHTTTCSEEEECSCC
T ss_pred eEEEEECCChHhHH-HHHHHHHHHHHH-CCCCeEEEEecHH--------------------HHHhhcCCCCEEEECCcc
Confidence 37999999998888 999999999998 7876654333211 123346789977777655
No 71
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=96.18 E-value=0.015 Score=39.07 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=52.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||+++.++. ..|..+++.+.+.+++ .|+++++...... ...+.+.++|.|++|--+-
T Consensus 7 mkIlL~C~aG-mSTsllv~km~~~a~~-~gi~v~i~a~~~~--------------------~~~~~~~~~DvvLLgPQV~ 64 (108)
T 3nbm_A 7 LKVLVLCAGS-GTSAQLANAINEGANL-TEVRVIANSGAYG--------------------AHYDIMGVYDLIILAPQVR 64 (108)
T ss_dssp EEEEEEESSS-SHHHHHHHHHHHHHHH-HTCSEEEEEEETT--------------------SCTTTGGGCSEEEECGGGG
T ss_pred ceEEEECCCC-CCHHHHHHHHHHHHHH-CCCceEEEEcchH--------------------HHHhhccCCCEEEEChHHH
Confidence 3788887654 6788899999999999 8999888653321 1334567899988875443
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
+. +..+-+.. .-.|+|+.++-.
T Consensus 65 y~-----~~~ik~~~-------~~~~ipV~vI~~ 86 (108)
T 3nbm_A 65 SY-----YREMKVDA-------ERLGIQIVATRG 86 (108)
T ss_dssp GG-----HHHHHHHH-------TTTTCEEEECCH
T ss_pred HH-----HHHHHHHh-------hhcCCcEEEeCH
Confidence 21 22222222 224788888754
No 72
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=95.97 E-value=0.024 Score=37.87 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=55.9
Q ss_pred ceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCC-CcCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDV-PVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ad~ii~gs 79 (202)
|||+.|-..|+| ||...++.+.+..++ .|.++.+--=... +. .....+++.+||.|||++
T Consensus 3 ~kivaVTaCptGiAhTymAaeaL~~aA~~-~G~~ikVEtqGs~----------------G~~n~Lt~~~I~~Ad~VIiA~ 65 (106)
T 2r48_A 3 AKLLAITSCPNGIAHTYMAAENLQKAADR-LGVSIKVETQGGI----------------GVENKLTEEEIREADAIIIAA 65 (106)
T ss_dssp CEEEEEEECSSCSHHHHHHHHHHHHHHHH-HTCEEEEEEEETT----------------EEESCCCHHHHHHCSEEEEEE
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCC----------------CccCCCCHHHHHhCCEEEEEe
Confidence 589999999998 799999999999998 8987665221110 00 002467999999999998
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
-+-- | . .+|.||++.-..+
T Consensus 66 d~~v-----------~-~------~RF~GK~v~~~~v 84 (106)
T 2r48_A 66 DRSV-----------N-K------DRFIGKKLLSVGV 84 (106)
T ss_dssp SSCC-----------C-C------GGGTTSBEEEECH
T ss_pred CCcc-----------C-H------hHcCCCeEEEeCH
Confidence 7531 1 1 3678999866544
No 73
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=95.91 E-value=0.0078 Score=40.55 Aligned_cols=57 Identities=16% Similarity=0.047 Sum_probs=40.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCce-EEEE--EccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVE-ATLW--QVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~-v~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
|+||+++.+|.-|.+..++..+.+.+++ .|++ +++. ++.+ ....+.++|.||.+
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~-~gi~~~~i~~~~~~~----------------------~~~~~~~~DlIi~t 74 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQ-LGVSDIESASCSVGE----------------------AKGLASNYDIVVAS 74 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHH-TTCCCEEEEEECHHH----------------------HHHHGGGCSEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHH-cCCCeEEEEEeeHHH----------------------HhhccCCCcEEEEC
Confidence 4589999988888888777799999998 7876 4432 3322 22335789977777
Q ss_pred ccc
Q 028917 79 FPS 81 (202)
Q Consensus 79 sP~ 81 (202)
.|+
T Consensus 75 ~~l 77 (110)
T 3czc_A 75 NHL 77 (110)
T ss_dssp TTT
T ss_pred Cch
Confidence 765
No 74
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=95.83 E-value=0.02 Score=38.20 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=55.9
Q ss_pred ceEEEEEecCCC--hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCC-CcCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYG--HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDV-PVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G--~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ad~ii~gs 79 (202)
|||+.|-..|+| ||...++.+.+..++ .|+++.+--=... +. .....+++.+||.|||++
T Consensus 3 ~kivaVTaCptGiAhTymAaeaL~~aA~~-~G~~ikVEtqGs~----------------G~~n~Lt~~~I~~Ad~VIiA~ 65 (106)
T 2r4q_A 3 AKILAVTACPTGIAHTFMAADALKEKAKE-LGVEIKVETNGSS----------------GIKHKLTAQEIEDAPAIIVAA 65 (106)
T ss_dssp CCEEEEEECSCC--CHHHHHHHHHHHHHH-HTCCEEEEEEETT----------------EEESCCCHHHHHHCSCEEEEE
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHHHH-CCCeEEEEecCCC----------------CccCCCCHHHHHhCCEEEEEe
Confidence 489999999998 899999999999998 8987665221110 00 002467999999999998
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
-+-- + . .+|.||++.-..+
T Consensus 66 d~~v-----------~-~------~RF~GK~v~~~~v 84 (106)
T 2r4q_A 66 DKQV-----------E-M------ERFKGKRVLQVPV 84 (106)
T ss_dssp SSCC-----------C-C------GGGTTSBEEEECH
T ss_pred CCcc-----------C-H------hHcCCCeEEEeCH
Confidence 7531 1 1 3678999766544
No 75
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=93.83 E-value=0.083 Score=36.33 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=29.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCc-eEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGV-EATLW 38 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~-~v~~~ 38 (202)
+||+++.+|.-|.+..++..+.+.+.+ .|+ ++++.
T Consensus 14 kkIlvVC~sGmgTS~ml~~klkk~~~e-~gi~~~~V~ 49 (125)
T 1vkr_A 14 RKIIVACDAGMGSSAMGAGVLRKKIQD-AGLSQISVT 49 (125)
T ss_dssp CEEEECCSSSSHHHHHHHHHHHHHHHH-TTCTTSEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHH-CCCceEEEE
Confidence 489999999899888888999999988 787 65543
No 76
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=93.75 E-value=0.2 Score=38.85 Aligned_cols=55 Identities=13% Similarity=-0.119 Sum_probs=36.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|+++|||-+|... .-+..+.+.+++ .|++|++++..+ ++ ...++|.++|.||+..
T Consensus 4 m~~vLiV~g~~~~---~~a~~l~~aL~~-~g~~V~~i~~~~------------------~~-~~~~~L~~yDvIIl~d 58 (259)
T 3rht_A 4 MTRVLYCGDTSLE---TAAGYLAGLMTS-WQWEFDYIPSHV------------------GL-DVGELLAKQDLVILSD 58 (259)
T ss_dssp --CEEEEESSCTT---TTHHHHHHHHHH-TTCCCEEECTTS------------------CB-CSSHHHHTCSEEEEES
T ss_pred CceEEEECCCCch---hHHHHHHHHHHh-CCceEEEecccc------------------cc-cChhHHhcCCEEEEcC
Confidence 4689999655432 234456666666 788999877654 12 2457899999999984
No 77
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=93.36 E-value=0.11 Score=38.74 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
|++||+||-+- .||+..+++++ ++ .|+++++++ ..+++.++|+||+
T Consensus 1 M~~~I~iiD~g-~~n~~si~~al----~~-~G~~~~v~~-------------------------~~~~l~~~D~lil 46 (211)
T 4gud_A 1 MTQNVVIIDTG-CANISSVKFAI----ER-LGYAVTISR-------------------------DPQVVLAADKLFL 46 (211)
T ss_dssp --CCEEEECCC-CTTHHHHHHHH----HH-TTCCEEEEC-------------------------CHHHHHHCSEEEE
T ss_pred CCCEEEEEECC-CChHHHHHHHH----HH-CCCEEEEEC-------------------------CHHHHhCCCEEEE
Confidence 88889998643 36887666554 55 688887642 2456888999999
No 78
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=92.96 E-value=0.25 Score=37.94 Aligned_cols=40 Identities=13% Similarity=0.012 Sum_probs=28.1
Q ss_pred CceEEEEEecC----------CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSL----------YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~----------~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+||+||-.|. +|....=+-...+.+++ +|++|++.....
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~iaS~~g 52 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEK-HGFEVDFVSETG 52 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHT-TTCEEEEEESSS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 34899888762 45544444456777787 899999998754
No 79
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=92.57 E-value=1.7 Score=33.62 Aligned_cols=116 Identities=11% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|| ||.|| + .|+ +...++..+.+ .|.+|.+++............. ... .....+.+.++|.||+..|
T Consensus 1 M~-~I~ii-G--~G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g-~~~-----~~~~~~~~~~advvi~~v~ 66 (287)
T 3pdu_A 1 MT-TYGFL-G--LGI---MGGPMAANLVR-AGFDVTVWNRNPAKCAPLVALG-ARQ-----ASSPAEVCAACDITIAMLA 66 (287)
T ss_dssp CC-CEEEE-C--CST---THHHHHHHHHH-HTCCEEEECSSGGGGHHHHHHT-CEE-----CSCHHHHHHHCSEEEECCS
T ss_pred CC-eEEEE-c--cCH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHCC-Cee-----cCCHHHHHHcCCEEEEEcC
Confidence 54 78887 3 344 33344555555 5778888876542111111111 000 0012344678999999999
Q ss_pred ccCCcchHHHHHHH---HhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 81 SRFGVMAAQCKAFF---DATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 81 ~y~g~~~~~~k~fl---d~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
.. ..++..+ +.+. ..+ .|+. ++.++.. . ......+...+...|..++..+
T Consensus 67 ~~-----~~~~~v~~~~~~l~-----~~l~~g~~--vv~~st~---~-~~~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pdu_A 67 DP-----AAAREVCFGANGVL-----EGIGGGRG--YIDMSTV---D-DETSTAIGAAVTARGGRFLEAP 120 (287)
T ss_dssp SH-----HHHHHHHHSTTCGG-----GTCCTTCE--EEECSCC---C-HHHHHHHHHHHHHTTCEEEECC
T ss_pred CH-----HHHHHHHcCchhhh-----hcccCCCE--EEECCCC---C-HHHHHHHHHHHHHcCCEEEECC
Confidence 62 3566666 4442 123 3432 2222221 1 2334556666777788877643
No 80
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=91.89 E-value=3 Score=32.56 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=60.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
++||.|| ..|+ +...++..+.+ .|.+|.+++........ ........... ...+.+.++|.||+..|.
T Consensus 7 ~~~I~iI---G~G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~-~~~~g~~~~~~----~~~e~~~~aDvvi~~vp~ 74 (303)
T 3g0o_A 7 DFHVGIV---GLGS---MGMGAARSCLR-AGLSTWGADLNPQACAN-LLAEGACGAAA----SAREFAGVVDALVILVVN 74 (303)
T ss_dssp CCEEEEE---CCSH---HHHHHHHHHHH-TTCEEEEECSCHHHHHH-HHHTTCSEEES----SSTTTTTTCSEEEECCSS
T ss_pred CCeEEEE---CCCH---HHHHHHHHHHH-CCCeEEEEECCHHHHHH-HHHcCCccccC----CHHHHHhcCCEEEEECCC
Confidence 3578777 3454 55566677777 78888888764311111 11111100001 123446789999999996
Q ss_pred cCCcchHHHHHHH---HhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 82 RFGVMAAQCKAFF---DATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 82 y~g~~~~~~k~fl---d~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
. ..++..+ +.+. ..+ .|+. ++.++.. .......+...+...|..+++.+
T Consensus 75 ~-----~~~~~v~~~~~~l~-----~~l~~g~i--vv~~st~----~~~~~~~~~~~~~~~g~~~~~~p 127 (303)
T 3g0o_A 75 A-----AQVRQVLFGEDGVA-----HLMKPGSA--VMVSSTI----SSADAQEIAAALTALNLNMLDAP 127 (303)
T ss_dssp H-----HHHHHHHC--CCCG-----GGSCTTCE--EEECSCC----CHHHHHHHHHHHHTTTCEEEECC
T ss_pred H-----HHHHHHHhChhhHH-----hhCCCCCE--EEecCCC----CHHHHHHHHHHHHHcCCeEEeCC
Confidence 3 3455555 4442 123 3332 2222211 12345556666777788777633
No 81
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=91.78 E-value=1.5 Score=32.65 Aligned_cols=105 Identities=10% Similarity=-0.058 Sum_probs=55.1
Q ss_pred CCceEEEEEecC--------CChHHHHHHHHHHHhhccCCceEEEEEccCCC-c-HH-HHh---hcC----CCCCCCCCC
Q 028917 1 MATKIYIVYYSL--------YGHVETMAREVQRGANSVLGVEATLWQVPETL-S-SV-ILQ---KMK----APPKTNDVP 62 (202)
Q Consensus 1 M~~kiliiy~S~--------~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~-~~-~~~---~~~----~~~~~~~~~ 62 (202)
||+||+|+.+|. +|....=+-...+.++. +|++++++...... + .. ... ... -... .+
T Consensus 4 m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~-ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~-~~-- 79 (224)
T 1u9c_A 4 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQE-KGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALK-HT-- 79 (224)
T ss_dssp CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHH-TTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTT-SB--
T ss_pred CCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHH-CCCeEEEECCCCCccccCccccccHHHHHhhhhHhhc-CC--
Confidence 777999988753 45444444456666777 78999998875421 0 00 000 000 0000 00
Q ss_pred cCChhh--hccCCeeEEecc---ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 63 VIRPHQ--LKEADGFLFGFP---SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 63 ~~~~~~--l~~ad~ii~gsP---~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
...++ ..++|+||+... .+...-.+.+..|+.+... ++|+++.++++
T Consensus 80 -~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~-------~~k~iaaiC~G 131 (224)
T 1u9c_A 80 -ARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAE-------DGRIIAAVCHG 131 (224)
T ss_dssp -EECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHH-------TTCEEEEETTG
T ss_pred -CChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHH-------CCCEEEEEChH
Confidence 11222 357999998642 2323345667777776632 46666665543
No 82
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=91.64 E-value=0.25 Score=36.08 Aligned_cols=100 Identities=10% Similarity=-0.032 Sum_probs=51.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh--ccCCeeEEe
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL--KEADGFLFG 78 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ad~ii~g 78 (202)
|++||+|+.+ .|....=+-...+.++. .|.+++++......+- .....-... ++...+++ .++|.||+.
T Consensus 4 m~kkv~ill~--~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~v--~~~~g~~i~----~d~~l~~~~~~~~D~livp 74 (190)
T 4e08_A 4 MSKSALVILA--PGAEEMEFIIAADVLRR-AGIKVTVAGLNGGEAV--KCSRDVQIL----PDTSLAQVASDKFDVVVLP 74 (190)
T ss_dssp CCCEEEEEEC--TTCCHHHHHHHHHHHHH-TTCEEEEEESSSSSCE--ECTTSCEEE----CSEETGGGTTCCCSEEEEC
T ss_pred CCcEEEEEEC--CCchHHHHHHHHHHHHH-CCCEEEEEECCCCcce--ecCCCcEEE----CCCCHHHCCcccCCEEEEC
Confidence 7888988875 45444334455677777 7889998887541110 000000000 00112333 468999985
Q ss_pred cc---ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 79 FP---SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 79 sP---~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
.- .+...-.+.+..|+.+.. -++|+++.+++
T Consensus 75 GG~~~~~~~~~~~~~~~~l~~~~-------~~~k~i~aiC~ 108 (190)
T 4e08_A 75 GGLGGSNAMGESSLVGDLLRSQE-------SGGGLIAAICA 108 (190)
T ss_dssp CCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETT
T ss_pred CCChHHHHhhhCHHHHHHHHHHH-------HCCCEEEEECH
Confidence 32 111122345566666553 25777766654
No 83
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=91.52 E-value=0.77 Score=35.31 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=37.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe-cc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG-FP 80 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g-sP 80 (202)
+++|+||-.....+...+.+. +++ .|++++++++... + ....++.++|+||+. .|
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~----l~~-~G~~v~v~~~~~~----------------~---~~p~~~~~~d~lIl~GGp 58 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDF----LAG-EHIPFQVLRMDRS----------------D---PLPAEIRDCSGLAMMGGP 58 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHH----HHH-TTCCEEEEEGGGT----------------C---CCCSCGGGSSEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHH----HHH-CCCeEEEEeccCC----------------C---cCcCccccCCEEEECCCC
Confidence 346999987777776766655 345 6889999887642 1 123467889998885 55
No 84
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=91.40 E-value=2.2 Score=33.36 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=46.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCC-ceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLG-VEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
|||||.+...-.-......+++.+++ .| ++|++.+-.+. + .+.+ ...+.|.++|+||+.+.
T Consensus 6 kvLiv~G~~~H~~~~~~~~l~~~l~~-~g~f~V~~~~d~~~-~-------------~d~~-~f~~~L~~~D~vV~~~~-- 67 (281)
T 4e5v_A 6 KTLLITGQNNHNWQVSHVVLKQILEN-SGRFDVDFVISPEQ-G-------------KDMS-GFVLDFSPYQLVVLDYN-- 67 (281)
T ss_dssp EEEEEESCCSSCHHHHHHHHHHHHHH-TTSEEEEEEECCCT-T-------------SCCT-TCCCCCTTCSEEEECCC--
T ss_pred EEEEEcCCCCCChHHHHHHHHHHHHh-cCCEEEEEEeCCcc-c-------------cchh-HHhhhhhcCCEEEEeCC--
Confidence 68888554422367788888888888 67 88888764321 0 0111 12246899999997542
Q ss_pred CCcc-hHHHHHHHHhh
Q 028917 83 FGVM-AAQCKAFFDAT 97 (202)
Q Consensus 83 ~g~~-~~~~k~fld~~ 97 (202)
...+ +...+.|.+.+
T Consensus 68 ~~~l~~~~~~~l~~yV 83 (281)
T 4e5v_A 68 GDSWPEETNRRFLEYV 83 (281)
T ss_dssp SSCCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH
Confidence 2333 45555666555
No 85
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=91.00 E-value=0.26 Score=36.66 Aligned_cols=101 Identities=15% Similarity=0.032 Sum_probs=53.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh--ccCCeeEEe
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL--KEADGFLFG 78 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ad~ii~g 78 (202)
||+||+|+.+ .|....=+-...+.++. .|.+++++......|- .....-... ++...+++ .++|.||+.
T Consensus 8 m~~~v~ill~--~g~~~~e~~~~~~~l~~-ag~~v~~vs~~g~~~v--~~~~G~~v~----~d~~l~~~~~~~~D~livp 78 (208)
T 3ot1_A 8 MSKRILVPVA--HGSEEMETVIIVDTLVR-AGFQVTMAAVGDKLQV--QGSRGVWLT----AEQTLEACSAEAFDALALP 78 (208)
T ss_dssp -CCEEEEEEC--TTCCHHHHHHHHHHHHH-TTCEEEEEESSSCSEE--ECTTSCEEE----CSEEGGGCCGGGCSEEEEC
T ss_pred cCCeEEEEEC--CCCcHHHHHHHHHHHHH-CCCEEEEEEcCCCcce--ecCCCcEEe----CCCCHHHCCCcCCCEEEEC
Confidence 6778888865 34444444455677777 7899999887521110 000000000 00112333 589999984
Q ss_pred cc---ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 79 FP---SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 79 sP---~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
.- .+.-.-.+.+..|+.+.. -+||+++.++++
T Consensus 79 GG~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~G 113 (208)
T 3ot1_A 79 GGVGGAQAFADSTALLALIDAFS-------QQGKLVAAICAT 113 (208)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHH-------HTTCEEEEETTH
T ss_pred CCchHHHHHhhCHHHHHHHHHHH-------HcCCEEEEEChh
Confidence 31 222223456677776653 267887777653
No 86
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=90.97 E-value=0.37 Score=35.38 Aligned_cols=100 Identities=8% Similarity=-0.072 Sum_probs=50.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh---ccCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL---KEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~ad~ii~ 77 (202)
|++||+|+-+ .|....=+-...+.++. .|.+++++......+- .....-... ++...+++ .++|.||+
T Consensus 2 m~~~v~ill~--~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~v--~~~~g~~v~----~d~~l~~~~~~~~~D~liv 72 (197)
T 2rk3_A 2 ASKRALVILA--KGAEEMETVIPVDVMRR-AGIKVTVAGLAGKDPV--QCSRDVVIC----PDASLEDAKKEGPYDVVVL 72 (197)
T ss_dssp CCCEEEEEEC--TTCCHHHHHHHHHHHHH-TTCEEEEEETTCSSCE--ECTTSCEEC----CSEEHHHHHTTCCCSEEEE
T ss_pred CCCEEEEEEC--CCCcHHHHHHHHHHHHH-CCCEEEEEEcCCCCcc--ccCCCCEEe----CCcCHHHcCCccCCCEEEE
Confidence 4567887775 44444334445666777 7888988876531110 000000000 11123445 78999998
Q ss_pred eccc---cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 78 GFPS---RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 78 gsP~---y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
.... +.-.-.+.+..|+.+.. -++|+++.+++
T Consensus 73 pGG~~~~~~l~~~~~~~~~l~~~~-------~~gk~i~aiC~ 107 (197)
T 2rk3_A 73 PGGNLGAQNLSESAAVKEILKEQE-------NRKGLIATICA 107 (197)
T ss_dssp CCCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETT
T ss_pred CCCchhHHHhhhCHHHHHHHHHHH-------HcCCEEEEECH
Confidence 6431 11112344555655542 25777666654
No 87
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=90.89 E-value=0.69 Score=35.53 Aligned_cols=39 Identities=15% Similarity=0.029 Sum_probs=26.7
Q ss_pred ceEEEEEecC----------CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSL----------YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~----------~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||+||..|. +|.-..=+-...+.+++ +|++|++.....
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~-aG~~V~~aSp~g 58 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTA-AGFEVDVASETG 58 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred CeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 6899998773 25433333345667777 899999998754
No 88
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=90.88 E-value=0.21 Score=36.79 Aligned_cols=38 Identities=13% Similarity=-0.077 Sum_probs=24.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+||+|+.+ +|..+.=+-...+.+++ +|++++++.+..
T Consensus 4 M~kV~ill~--dGfe~~E~~~p~~vl~~-ag~~v~~~s~~~ 41 (194)
T 4gdh_A 4 MVKVCLFVA--DGTDEIEFSAPWGIFKR-AEIPIDSVYVGE 41 (194)
T ss_dssp -CCEEEEEE--TTCCHHHHHHHHHHHHH-TTCCEEEEEESS
T ss_pred CCEEEEEEC--CCcCHHHHHHHHHHHHH-CCCeEEEEEEcC
Confidence 448988775 45443323345566777 788998887754
No 89
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=90.78 E-value=1.2 Score=34.83 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=44.9
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|++||.|| . .|+ +...++..+.+ .|.+|.+++..... ...+.+.++|.||++.
T Consensus 20 ~~~~I~iI---Gg~G~---mG~~la~~l~~-~G~~V~~~~~~~~~-------------------~~~~~~~~aDvVilav 73 (298)
T 2pv7_A 20 DIHKIVIV---GGYGK---LGGLFARYLRA-SGYPISILDREDWA-------------------VAESILANADVVIVSV 73 (298)
T ss_dssp TCCCEEEE---TTTSH---HHHHHHHHHHT-TTCCEEEECTTCGG-------------------GHHHHHTTCSEEEECS
T ss_pred CCCEEEEE---cCCCH---HHHHHHHHHHh-CCCeEEEEECCccc-------------------CHHHHhcCCCEEEEeC
Confidence 45578777 3 444 66777888877 78888887643210 1234578999999999
Q ss_pred cccCCcchHHHHHHHHhhh
Q 028917 80 PSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~ 98 (202)
|... +..+++.+.
T Consensus 74 p~~~------~~~vl~~l~ 86 (298)
T 2pv7_A 74 PINL------TLETIERLK 86 (298)
T ss_dssp CGGG------HHHHHHHHG
T ss_pred CHHH------HHHHHHHHH
Confidence 9874 566666653
No 90
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=90.54 E-value=1.2 Score=34.09 Aligned_cols=41 Identities=15% Similarity=0.043 Sum_probs=26.4
Q ss_pred CCceEEEEEec---CCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYS---LYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S---~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|++||+|+..| ..|....=+-...+.+++ +|++++++....
T Consensus 22 M~kkV~ill~~~~~~dG~e~~E~~~p~~vL~~-aG~~V~~~S~~~ 65 (242)
T 3l3b_A 22 MALNSAVILAGCGHMDGSEIREAVLVMLELDR-HNVNFKCFAPNK 65 (242)
T ss_dssp --CEEEEECCCSSTTTSCCHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred ccCEEEEEEecCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 56789888754 246544434455677777 899999988754
No 91
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=90.27 E-value=4.4 Score=31.76 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=61.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| ..|+ +...++..+.+ .|.+|.+++............ ... ......+.+.++|.||+..|.-
T Consensus 22 ~~I~iI---G~G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~~-g~~-----~~~~~~~~~~~aDvvi~~vp~~ 88 (310)
T 3doj_A 22 MEVGFL---GLGI---MGKAMSMNLLK-NGFKVTVWNRTLSKCDELVEH-GAS-----VCESPAEVIKKCKYTIAMLSDP 88 (310)
T ss_dssp CEEEEE---CCSH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHT-TCE-----ECSSHHHHHHHCSEEEECCSSH
T ss_pred CEEEEE---CccH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHC-CCe-----EcCCHHHHHHhCCEEEEEcCCH
Confidence 478877 3454 56667777777 788898887654211111111 000 0001234578899999999863
Q ss_pred CCcchHHHHHHH---HhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 83 FGVMAAQCKAFF---DATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 83 ~g~~~~~~k~fl---d~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
..++..+ +.+.. ....|+. ++.++.. . ......+...+...|..+++.+
T Consensus 89 -----~~~~~v~~~~~~l~~----~l~~g~~--vv~~st~---~-~~~~~~~~~~~~~~g~~~v~~p 140 (310)
T 3doj_A 89 -----CAALSVVFDKGGVLE----QICEGKG--YIDMSTV---D-AETSLKINEAITGKGGRFVEGP 140 (310)
T ss_dssp -----HHHHHHHHSTTCGGG----GCCTTCE--EEECSCC---C-HHHHHHHHHHHHHTTCEEEECC
T ss_pred -----HHHHHHHhCchhhhh----ccCCCCE--EEECCCC---C-HHHHHHHHHHHHHcCCEEEeCC
Confidence 3456555 44421 1123442 2222221 1 2334556666777788877643
No 92
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=90.12 E-value=2.4 Score=32.59 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=36.5
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchH-HHHHHHHhh
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAA-QCKAFFDAT 97 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~-~~k~fld~~ 97 (202)
...|++.|++ .|++|+...+.+... ....+.+.++|+||+-.-.-.+.++. ..+.|.+.+
T Consensus 34 ~~~i~~~L~~-~gf~V~~~t~dd~~~-----------------~~~~~~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V 94 (252)
T 1t0b_A 34 HTVIASYLAE-AGFDAATAVLDEPEH-----------------GLTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRV 94 (252)
T ss_dssp HHHHHHHHHH-TTCEEEEEESSSGGG-----------------GCCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhh-CCcEEEEEeccCccc-----------------cCCHhHHhcCCEEEEecCCCCCcCCHHHHHHHHHHH
Confidence 4566888888 899999877654200 01346799999999842222333444 445555444
No 93
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=89.73 E-value=5.9 Score=30.78 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=61.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| + .|+ +...++..+.+ .|.+|.+++..........+.. .. .. ...+++.++|.||+..|..
T Consensus 16 ~~I~vI-G--~G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~g-~~-----~~-~~~~~~~~aDvvi~~vp~~ 81 (296)
T 3qha_A 16 LKLGYI-G--LGN---MGAPMATRMTE-WPGGVTVYDIRIEAMTPLAEAG-AT-----LA-DSVADVAAADLIHITVLDD 81 (296)
T ss_dssp CCEEEE-C--CST---THHHHHHHHTT-STTCEEEECSSTTTSHHHHHTT-CE-----EC-SSHHHHTTSSEEEECCSSH
T ss_pred CeEEEE-C--cCH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHCC-CE-----Ec-CCHHHHHhCCEEEEECCCh
Confidence 467776 3 343 44566677777 7899999887653222111110 00 00 1233333399999999963
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
..++..++.+.. .++...+ ++.++.. . ......+...+...|..+++.+.
T Consensus 82 -----~~~~~v~~~l~~-----~l~~g~i-vv~~st~---~-~~~~~~~~~~~~~~g~~~~~~pv 131 (296)
T 3qha_A 82 -----AQVREVVGELAG-----HAKPGTV-IAIHSTI---S-DTTAVELARDLKARDIHIVDAPV 131 (296)
T ss_dssp -----HHHHHHHHHHHT-----TCCTTCE-EEECSCC---C-HHHHHHHHHHHGGGTCEEEECCE
T ss_pred -----HHHHHHHHHHHH-----hcCCCCE-EEEeCCC---C-HHHHHHHHHHHHHcCCEEEeCCC
Confidence 346666666532 2322222 2222211 1 23345566677777888776443
No 94
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=89.65 E-value=0.32 Score=36.02 Aligned_cols=98 Identities=11% Similarity=-0.076 Sum_probs=51.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC--cHHHHhhcCCCCCCCCC---CcCChhhh--ccCC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL--SSVILQKMKAPPKTNDV---PVIRPHQL--KEAD 73 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~l--~~ad 73 (202)
|++||+|+-+... ...=+-...+.++. .|++++++...... +- ... .++ ++...+++ .++|
T Consensus 1 M~~kV~ill~~g~--~~~e~~~~~~~l~~-ag~~v~~vs~~~~~~~~v---~~~------~g~~v~~~~~l~~~~~~~~D 68 (205)
T 2ab0_A 1 MSASALVCLAPGS--EETEAVTTIDLLVR-GGIKVTTASVASDGNLAI---TCS------RGVKLLADAPLVEVADGEYD 68 (205)
T ss_dssp -CCEEEEEECTTC--CHHHHHHHHHHHHH-TTCEEEEEECSSTTCCEE---ECT------TSCEEECSEEHHHHTTSCCS
T ss_pred CCcEEEEEEcCCC--cHHHHHHHHHHHHH-CCCEEEEEeCCCCCCcee---ecC------CCeEEecCCCHHHCCcccCC
Confidence 7779998876433 22223335566676 78899888765321 10 000 011 00123344 6799
Q ss_pred eeEEecc---ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 74 GFLFGFP---SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 74 ~ii~gsP---~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
.||+... .+.-.-.+.+..|+.+.. -+||+++.++++
T Consensus 69 ~livpGG~~~~~~l~~~~~l~~~l~~~~-------~~gk~i~aiC~G 108 (205)
T 2ab0_A 69 VIVLPGGIKGAECFRDSTLLVETVKQFH-------RSGRIVAAICAA 108 (205)
T ss_dssp EEEECCCHHHHHHHHHCHHHHHHHHHHH-------HTTCEEEEETHH
T ss_pred EEEECCCcccHHHhccCHHHHHHHHHHH-------HcCCEEEEECHh
Confidence 9998643 121112345556665542 267877776653
No 95
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=89.43 E-value=2.8 Score=32.59 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=58.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| + .|+ +...++..+.+ .|.+|.+++........ +....... .. ...+.+.++|.||+..|..
T Consensus 4 ~~I~ii-G--~G~---mG~~~a~~l~~-~G~~V~~~d~~~~~~~~-~~~~g~~~----~~-~~~~~~~~aDvvi~~vp~~ 70 (302)
T 2h78_A 4 KQIAFI-G--LGH---MGAPMATNLLK-AGYLLNVFDLVQSAVDG-LVAAGASA----AR-SARDAVQGADVVISMLPAS 70 (302)
T ss_dssp CEEEEE-C--CST---THHHHHHHHHH-TTCEEEEECSSHHHHHH-HHHTTCEE----CS-SHHHHHTTCSEEEECCSCH
T ss_pred CEEEEE-e--ecH---HHHHHHHHHHh-CCCeEEEEcCCHHHHHH-HHHCCCeE----cC-CHHHHHhCCCeEEEECCCH
Confidence 388887 3 344 44455666666 78888888754311111 11110000 00 1234567899999999862
Q ss_pred CCcchHHHHHHHH---hhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 83 FGVMAAQCKAFFD---ATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 83 ~g~~~~~~k~fld---~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
..++..+. .+. ..+ .++. ++.++.. .......+...+...|..++..
T Consensus 71 -----~~~~~v~~~~~~~~-----~~l~~~~~--vi~~st~----~~~~~~~l~~~~~~~g~~~~~~ 121 (302)
T 2h78_A 71 -----QHVEGLYLDDDGLL-----AHIAPGTL--VLECSTI----APTSARKIHAAARERGLAMLDA 121 (302)
T ss_dssp -----HHHHHHHHSSSCGG-----GSSCSSCE--EEECSCC----CHHHHHHHHHHHHHTTCCEEEC
T ss_pred -----HHHHHHHcCchhHH-----hcCCCCcE--EEECCCC----CHHHHHHHHHHHHHcCCEEEEE
Confidence 35676665 442 123 3332 2332221 1223445666666677777754
No 96
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=88.32 E-value=1.8 Score=33.44 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=30.4
Q ss_pred CCceEEEEEecCCCh---HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGH---VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|++||+|+++..... +-..++.+++.+++ .|+++..++..+
T Consensus 1 m~~~i~il~gg~s~e~~~s~~~~~~l~~al~~-~G~~v~~~~~~~ 44 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLRE-GGIDAYPVDPKE 44 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTT
T ss_pred CCcEEEEEeCCCCccceEcHHhHHHHHHHHHH-CCCeEEEEecCc
Confidence 778999998755432 22256788888888 899998888764
No 97
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=88.32 E-value=0.79 Score=33.68 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=20.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
|++||+|+- ...||...+ .+.+++ .|+++.+++
T Consensus 1 M~~~I~iid-~~~~~~~~~----~~~l~~-~G~~~~~~~ 33 (200)
T 1ka9_H 1 MRMKALLID-YGSGNLRSA----AKALEA-AGFSVAVAQ 33 (200)
T ss_dssp --CEEEEEC-SSCSCHHHH----HHHHHH-TTCEEEEES
T ss_pred CccEEEEEe-CCCccHHHH----HHHHHH-CCCeEEEec
Confidence 777999883 344677554 455555 687777654
No 98
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=88.11 E-value=1.7 Score=38.35 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=62.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||+|+...+.|..+.-+..+.+.|++ +|++|+++...... . .|.. ....+-.++|+||+---..
T Consensus 530 ~kVaIL~a~~dGfe~~E~~~~~~~L~~-aG~~V~vVs~~~g~------------~-vD~t-~~~~~s~~fDAVvlPGG~~ 594 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQGAKLQVALSS-VGVDVVVVAERXAN------------N-VDET-YSASDAVQFDAVVVADGAE 594 (688)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHGG-GTCEEEEEESSCCT------------T-CCEE-STTCCGGGCSEEEECTTCG
T ss_pred CEEEEEecCCCCCcHHHHHHHHHHHHH-CCCEEEEEeccCCc------------c-cccc-hhcCCccccCeEEecCCCc
Confidence 478887655589888889999999999 99999998875310 0 1111 0122467899999975432
Q ss_pred C-------------------CcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 83 F-------------------GVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 83 ~-------------------g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
. -...+.+..|+..... .||+++.++.
T Consensus 595 g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~-------~gKpIaAIc~ 640 (688)
T 2iuf_A 595 GLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFR-------FGKTVGALGS 640 (688)
T ss_dssp GGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHH-------HTCEEEEEGG
T ss_pred ccccccccccccccccchhhcccChHHHHHHHHHHH-------cCCEEEEECc
Confidence 2 2235567777776532 5899988864
No 99
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=87.62 E-value=1.9 Score=33.93 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=30.7
Q ss_pred CCceEEEEEecCCChH---HHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHV---ETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T---~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|++||+|+++..+.-- -.-++.+++.+++ .|+++..++..+
T Consensus 12 ~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~-~g~~v~~i~~~~ 55 (317)
T 4eg0_A 12 RFGKVAVLFGGESAEREVSLTSGRLVLQGLRD-AGIDAHPFDPAE 55 (317)
T ss_dssp GGCEEEEECCCSSTTHHHHHHHHHHHHHHHHH-TTCEEEEECTTT
T ss_pred hcceEEEEECCCCCcceeeHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 5678999998655432 2357888999998 899999988543
No 100
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=87.52 E-value=2.8 Score=31.53 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=25.7
Q ss_pred CceEEEEEecC---CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSL---YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~---~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+||+|+-+|. .|....=+-...+.++. +|.+++++....
T Consensus 6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~-ag~~v~~~s~~g 48 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISR-SGAQAVCFAPDK 48 (232)
T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CCeEEEEEccCCCCCCeeHHHHHHHHHHHHH-CCCEEEEEecCC
Confidence 55898887652 45433333345566777 789999988753
No 101
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=87.30 E-value=1.9 Score=33.41 Aligned_cols=77 Identities=14% Similarity=0.123 Sum_probs=44.1
Q ss_pred CCceEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
||+||.|| .. |+ +...++..+.+ .|.+|.+++...... ....... .. .. ...+.+.++|.||+..
T Consensus 10 mmm~I~iI---G~tG~---mG~~la~~l~~-~g~~V~~~~r~~~~~-~~~~~~g--~~---~~-~~~~~~~~aDvVi~av 75 (286)
T 3c24_A 10 GPKTVAIL---GAGGK---MGARITRKIHD-SAHHLAAIEIAPEGR-DRLQGMG--IP---LT-DGDGWIDEADVVVLAL 75 (286)
T ss_dssp CCCEEEEE---TTTSH---HHHHHHHHHHH-SSSEEEEECCSHHHH-HHHHHTT--CC---CC-CSSGGGGTCSEEEECS
T ss_pred cCCEEEEE---CCCCH---HHHHHHHHHHh-CCCEEEEEECCHHHH-HHHHhcC--CC---cC-CHHHHhcCCCEEEEcC
Confidence 45688876 22 44 66677777777 788887766432100 1111111 11 01 1234578999999999
Q ss_pred cccCCcchHHHHHHHHhh
Q 028917 80 PSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~ 97 (202)
|... ++..++.+
T Consensus 76 ~~~~------~~~v~~~l 87 (286)
T 3c24_A 76 PDNI------IEKVAEDI 87 (286)
T ss_dssp CHHH------HHHHHHHH
T ss_pred CchH------HHHHHHHH
Confidence 9753 56666655
No 102
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=87.15 E-value=3.4 Score=31.96 Aligned_cols=116 Identities=12% Similarity=0.096 Sum_probs=54.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+|||.||= .|+ +...++..+.+ .|.+|.+++...... ..+....... .. ...+.+.++|.||+.+|
T Consensus 4 M~m~i~iiG---~G~---~G~~~a~~l~~-~g~~V~~~~~~~~~~-~~~~~~g~~~----~~-~~~~~~~~~D~vi~~v~ 70 (299)
T 1vpd_A 4 MTMKVGFIG---LGI---MGKPMSKNLLK-AGYSLVVSDRNPEAI-ADVIAAGAET----AS-TAKAIAEQCDVIITMLP 70 (299)
T ss_dssp --CEEEEEC---CST---THHHHHHHHHH-TTCEEEEECSCHHHH-HHHHHTTCEE----CS-SHHHHHHHCSEEEECCS
T ss_pred ccceEEEEC---chH---HHHHHHHHHHh-CCCEEEEEeCCHHHH-HHHHHCCCee----cC-CHHHHHhCCCEEEEECC
Confidence 666888773 343 33344555555 677777766532110 1111110000 00 12244678999999998
Q ss_pred ccCCcchHHHHHHH---HhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 81 SRFGVMAAQCKAFF---DATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 81 ~y~g~~~~~~k~fl---d~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
.- ..++..+ +.+.. .+ .|+.+ +.++. + .......+...+...|..+++.
T Consensus 71 ~~-----~~~~~~~~~~~~l~~-----~l~~~~~v--v~~s~---~-~~~~~~~l~~~~~~~g~~~~~~ 123 (299)
T 1vpd_A 71 NS-----PHVKEVALGENGIIE-----GAKPGTVL--IDMSS---I-APLASREISDALKAKGVEMLDA 123 (299)
T ss_dssp SH-----HHHHHHHHSTTCHHH-----HCCTTCEE--EECSC---C-CHHHHHHHHHHHHTTTCEEEEC
T ss_pred CH-----HHHHHHHhCcchHhh-----cCCCCCEE--EECCC---C-CHHHHHHHHHHHHHcCCeEEEe
Confidence 52 2355555 33321 22 34432 22221 1 1223455666666667776643
No 103
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=86.84 E-value=2 Score=32.72 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=58.8
Q ss_pred CCceEEEEEecCCCh--HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChh------hhccC
Q 028917 1 MATKIYIVYYSLYGH--VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPH------QLKEA 72 (202)
Q Consensus 1 M~~kiliiy~S~~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~a 72 (202)
|+.||-|+= -|| |..+++.+++...+..++++.++--.....+++... ..+ +=++-
T Consensus 2 mvvKiGiiK---lGNigts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~~-------------~~~~~~~~~~~~~p 65 (283)
T 1qv9_A 2 TVAKAIFIK---CGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEA-------------AVEMALDIAEDFEP 65 (283)
T ss_dssp CCEEEEEEE---CSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHH-------------HHHHHHHHHHHHCC
T ss_pred eeEEEEEEE---ecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHH-------------HHHHhhhhhhhcCC
Confidence 555777774 454 788999999888775678888877655433322210 111 23588
Q ss_pred CeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 73 DGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 73 d~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
|.+|+.|| |+..|++-+. =+.+ .-+|.|+.+++-.
T Consensus 66 DfvI~isP--N~a~PGP~~A-RE~l-------~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 66 DFIVYGGP--NPAAPGPSKA-REML-------ADSEYPAVIIGDA 100 (283)
T ss_dssp SEEEEECS--CTTSHHHHHH-HHHH-------HTSSSCEEEEEEG
T ss_pred CEEEEECC--CCCCCCchHH-HHHH-------HhCCCCEEEEcCC
Confidence 99999999 6778887543 1111 1278999888754
No 104
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=86.32 E-value=1 Score=33.55 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=43.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEE-EEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATL-WQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+||.||= .|+ +...++..+.+ .|.++.+ ++-................. . ...+.+.++|.||+++|
T Consensus 23 mmkI~IIG---~G~---mG~~la~~l~~-~g~~V~~v~~r~~~~~~~l~~~~g~~~~----~-~~~~~~~~aDvVilavp 90 (220)
T 4huj_A 23 MTTYAIIG---AGA---IGSALAERFTA-AQIPAIIANSRGPASLSSVTDRFGASVK----A-VELKDALQADVVILAVP 90 (220)
T ss_dssp SCCEEEEE---CHH---HHHHHHHHHHH-TTCCEEEECTTCGGGGHHHHHHHTTTEE----E-CCHHHHTTSSEEEEESC
T ss_pred CCEEEEEC---CCH---HHHHHHHHHHh-CCCEEEEEECCCHHHHHHHHHHhCCCcc----c-ChHHHHhcCCEEEEeCC
Confidence 45788762 444 66677777777 7888776 44322111111111010000 0 13456789999999998
Q ss_pred ccCCcchHHHHHHHHhh
Q 028917 81 SRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~ 97 (202)
. ..+...++.+
T Consensus 91 ~------~~~~~v~~~l 101 (220)
T 4huj_A 91 Y------DSIADIVTQV 101 (220)
T ss_dssp G------GGHHHHHTTC
T ss_pred h------HHHHHHHHHh
Confidence 3 4566666665
No 105
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=85.77 E-value=0.96 Score=33.64 Aligned_cols=39 Identities=5% Similarity=-0.034 Sum_probs=24.4
Q ss_pred cCCeeEEe-ccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 71 EADGFLFG-FPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 71 ~ad~ii~g-sP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
++|.||+- .+.+.-...+.+..|+.+... +||+++.+++
T Consensus 74 ~~D~livpGG~~~~~~~~~~l~~~l~~~~~-------~gk~iaaiC~ 113 (212)
T 3efe_A 74 SKDLLILPGGTTWSEEIHQPILERIGQALK-------IGTIVAAICG 113 (212)
T ss_dssp TTCEEEECCCSCTTSGGGHHHHHHHHHHHH-------HTCEEEEETH
T ss_pred CCCEEEECCCCccccccCHHHHHHHHHHHH-------CCCEEEEEcH
Confidence 89999983 333333455677777776632 4666666554
No 106
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=84.82 E-value=4.6 Score=30.36 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=33.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
||++|-+.+.-+-..+.+ .+++ .|++++++++... + ..++++.++|+||+.
T Consensus 2 ~i~vi~h~~~e~~g~~~~----~l~~-~g~~~~~~~~~~~---------------~----~~p~~~~~~d~lii~ 52 (236)
T 3l7n_A 2 RIHFILHETFEAPGAYLA----WAAL-RGHDVSMTKVYRY---------------E----KLPKDIDDFDMLILM 52 (236)
T ss_dssp EEEEEECCTTSCCHHHHH----HHHH-TTCEEEEEEGGGT---------------C----CCCSCGGGCSEEEEC
T ss_pred eEEEEeCCCCCCchHHHH----HHHH-CCCeEEEEeeeCC---------------C----CCCCCccccCEEEEC
Confidence 899999877543333333 3455 6889999988642 1 123357899998886
No 107
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=84.73 E-value=5.1 Score=30.25 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=25.0
Q ss_pred CceEEEEEecC----------CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSL----------YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~----------~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+||+|+..|. +|....=+-...+.+++ +|++|+++....
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~-ag~~v~~~s~~g 52 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRK-EGFEVDFVSETG 52 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 35899888762 34332222335566666 799999887643
No 108
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=83.76 E-value=14 Score=28.99 Aligned_cols=114 Identities=15% Similarity=0.073 Sum_probs=60.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCC-ceEEEEEccCCCcH---HHH---hhcCCCCCCCCCCcCChhhhccCC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLG-VEATLWQVPETLSS---VIL---QKMKAPPKTNDVPVIRPHQLKEAD 73 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~l~~ad 73 (202)
|++||.|| ..|+ +...++..+.+ .| .+|.+++.....+. ... ..... . . ....+.+.++|
T Consensus 23 M~m~IgvI---G~G~---mG~~lA~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~-~---~s~~e~~~~aD 89 (317)
T 4ezb_A 23 MMTTIAFI---GFGE---AAQSIAGGLGG-RNAARLAAYDLRFNDPAASGALRARAAELGV--E-P---LDDVAGIACAD 89 (317)
T ss_dssp SCCEEEEE---CCSH---HHHHHHHHHHT-TTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--E-E---ESSGGGGGGCS
T ss_pred cCCeEEEE---CccH---HHHHHHHHHHH-cCCCeEEEEeCCCccccchHHHHHHHHHCCC--C-C---CCHHHHHhcCC
Confidence 66688877 3454 66677777777 78 89998887641110 111 11010 0 0 01234568899
Q ss_pred eeEEeccccCCcchHHHHHHHHhhhhhhhhccCC-CCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEec
Q 028917 74 GFLFGFPSRFGVMAAQCKAFFDATYELWASQALA-GKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVP 144 (202)
Q Consensus 74 ~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~-gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~ 144 (202)
.||+..|...- ...++.+. ..++ ++ + ++.+++. ...+...+...+...|..+++
T Consensus 90 vVi~avp~~~~------~~~~~~i~-----~~l~~~~-i-vv~~st~----~p~~~~~~~~~l~~~g~~~~d 144 (317)
T 4ezb_A 90 VVLSLVVGAAT------KAVAASAA-----PHLSDEA-V-FIDLNSV----GPDTKALAAGAIATGKGSFVE 144 (317)
T ss_dssp EEEECCCGGGH------HHHHHHHG-----GGCCTTC-E-EEECCSC----CHHHHHHHHHHHHTSSCEEEE
T ss_pred EEEEecCCHHH------HHHHHHHH-----hhcCCCC-E-EEECCCC----CHHHHHHHHHHHHHcCCeEEe
Confidence 99999998531 22234432 1233 33 2 2322221 123455666677777776664
No 109
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=83.76 E-value=12 Score=28.67 Aligned_cols=75 Identities=15% Similarity=0.051 Sum_probs=38.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
||||.|| | .|+ +...++..+.+ .|.+|.+++ .........+. .. . ......+.+.++|.||+.+|.
T Consensus 3 ~m~i~ii-G--~G~---~G~~~a~~l~~-~g~~V~~~~-~~~~~~~~~~~-g~--~---~~~~~~~~~~~~D~vi~~vp~ 68 (295)
T 1yb4_A 3 AMKLGFI-G--LGI---MGSPMAINLAR-AGHQLHVTT-IGPVADELLSL-GA--V---NVETARQVTEFADIIFIMVPD 68 (295)
T ss_dssp -CEEEEC-C--CST---THHHHHHHHHH-TTCEEEECC-SSCCCHHHHTT-TC--B---CCSSHHHHHHTCSEEEECCSS
T ss_pred CCEEEEE-c--cCH---HHHHHHHHHHh-CCCEEEEEc-CHHHHHHHHHc-CC--c---ccCCHHHHHhcCCEEEEECCC
Confidence 3478776 3 344 33344555555 678888777 43222211111 00 0 000123446789999999986
Q ss_pred cCCcchHHHHHHHH
Q 028917 82 RFGVMAAQCKAFFD 95 (202)
Q Consensus 82 y~g~~~~~~k~fld 95 (202)
.. .++..+.
T Consensus 69 ~~-----~~~~v~~ 77 (295)
T 1yb4_A 69 TP-----QVEDVLF 77 (295)
T ss_dssp HH-----HHHHHHH
T ss_pred HH-----HHHHHHh
Confidence 32 3566665
No 110
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=83.46 E-value=13 Score=28.46 Aligned_cols=115 Identities=11% Similarity=0.101 Sum_probs=61.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| ..|+ +...++..+.+ .|.+|.+++..........+.. ... .. ...+.+.++|.||+..|.-
T Consensus 2 ~~i~iI---G~G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g-~~~----~~-~~~~~~~~aDvvi~~vp~~ 68 (287)
T 3pef_A 2 QKFGFI---GLGI---MGSAMAKNLVK-AGCSVTIWNRSPEKAEELAALG-AER----AA-TPCEVVESCPVTFAMLADP 68 (287)
T ss_dssp CEEEEE---CCSH---HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHTT-CEE----CS-SHHHHHHHCSEEEECCSSH
T ss_pred CEEEEE---eecH---HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHCC-Cee----cC-CHHHHHhcCCEEEEEcCCH
Confidence 377776 3454 55666777777 7888888876542111111110 000 00 1234567899999999852
Q ss_pred CCcchHHHHHHH---HhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 83 FGVMAAQCKAFF---DATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 83 ~g~~~~~~k~fl---d~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
..++..+ +.+.. .+ .|+. ++.+++. . ......+...+...|..+++.+
T Consensus 69 -----~~~~~v~~~~~~l~~-----~l~~~~~--vi~~st~---~-~~~~~~~~~~~~~~g~~~~~~p 120 (287)
T 3pef_A 69 -----AAAEEVCFGKHGVLE-----GIGEGRG--YVDMSTV---D-PATSQRIGVAVVAKGGRFLEAP 120 (287)
T ss_dssp -----HHHHHHHHSTTCHHH-----HCCTTCE--EEECSCC---C-HHHHHHHHHHHHHTTCEEEECC
T ss_pred -----HHHHHHHcCcchHhh-----cCCCCCE--EEeCCCC---C-HHHHHHHHHHHHHhCCEEEECC
Confidence 3456655 44432 23 3443 2323221 1 2334556666777788877643
No 111
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=83.36 E-value=11 Score=30.27 Aligned_cols=115 Identities=13% Similarity=0.177 Sum_probs=59.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccC---CeeEEec
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEA---DGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a---d~ii~gs 79 (202)
+||.|| ..|+ |...++..+.+ .|.+|.+++........ +....... .. ...+.+.++ |.||+..
T Consensus 23 mkIgiI---GlG~---mG~~~A~~L~~-~G~~V~v~dr~~~~~~~-l~~~g~~~----~~-s~~e~~~~a~~~DvVi~~v 89 (358)
T 4e21_A 23 MQIGMI---GLGR---MGADMVRRLRK-GGHECVVYDLNVNAVQA-LEREGIAG----AR-SIEEFCAKLVKPRVVWLMV 89 (358)
T ss_dssp CEEEEE---CCSH---HHHHHHHHHHH-TTCEEEEECSCHHHHHH-HHTTTCBC----CS-SHHHHHHHSCSSCEEEECS
T ss_pred CEEEEE---CchH---HHHHHHHHHHh-CCCEEEEEeCCHHHHHH-HHHCCCEE----eC-CHHHHHhcCCCCCEEEEeC
Confidence 467776 3454 55666777777 78888888764311111 11110000 00 122345567 9999999
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccCC-CCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQALA-GKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l~-gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
|.. .++..++.+.. .++ |+. ++ ..++ ... .....+...+...|..+++.+.
T Consensus 90 p~~------~v~~vl~~l~~-----~l~~g~i--iI-d~st--~~~-~~~~~~~~~l~~~g~~~vdapV 141 (358)
T 4e21_A 90 PAA------VVDSMLQRMTP-----LLAANDI--VI-DGGN--SHY-QDDIRRADQMRAQGITYVDVGT 141 (358)
T ss_dssp CGG------GHHHHHHHHGG-----GCCTTCE--EE-ECSS--CCH-HHHHHHHHHHHTTTCEEEEEEE
T ss_pred CHH------HHHHHHHHHHh-----hCCCCCE--EE-eCCC--CCh-HHHHHHHHHHHHCCCEEEeCCC
Confidence 986 34555555532 232 332 22 3222 112 2344556677778888776433
No 112
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=83.31 E-value=1.2 Score=33.22 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=16.2
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHH
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAF 93 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~f 93 (202)
.+.+.++|+|+++- |+....++.+
T Consensus 74 ~~~l~~ad~I~l~G----G~~~~l~~~L 97 (206)
T 3l4e_A 74 TTKLRKNDFIYVTG----GNTFFLLQEL 97 (206)
T ss_dssp HHHHHHSSEEEECC----SCHHHHHHHH
T ss_pred HHHHHhCCEEEECC----CCHHHHHHHH
Confidence 36789999999853 5555444443
No 113
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=82.35 E-value=11 Score=27.43 Aligned_cols=88 Identities=7% Similarity=-0.027 Sum_probs=41.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhh-ccCCceEEEEEccCC-CcHHHH-hhcCCCCCCCCCCc--CChhhhccCCee
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGAN-SVLGVEATLWQVPET-LSSVIL-QKMKAPPKTNDVPV--IRPHQLKEADGF 75 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~-~~~g~~v~~~~l~~~-~~~~~~-~~~~~~~~~~~~~~--~~~~~l~~ad~i 75 (202)
||||.++|.+ -|..+...+++.|. + .|.+|.++.-... ...... ....+..-.-|+.+ .....+...|.|
T Consensus 3 ~mmk~vlVtG----asg~iG~~~~~~l~~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 77 (221)
T 3r6d_A 3 AMYXYITILG----AAGQIAQXLTATLLTY-TDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVV 77 (221)
T ss_dssp CSCSEEEEES----TTSHHHHHHHHHHHHH-CCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred ceEEEEEEEe----CCcHHHHHHHHHHHhc-CCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEE
Confidence 4456444443 33445566666665 5 6888877654321 000000 00000000012211 123456788999
Q ss_pred EEeccccCCcchHHHHHHHHhh
Q 028917 76 LFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 76 i~gsP~y~g~~~~~~k~fld~~ 97 (202)
|...... ++. .+.+++.+
T Consensus 78 v~~ag~~--n~~--~~~~~~~~ 95 (221)
T 3r6d_A 78 FVGAMES--GSD--MASIVKAL 95 (221)
T ss_dssp EESCCCC--HHH--HHHHHHHH
T ss_pred EEcCCCC--Chh--HHHHHHHH
Confidence 9877643 222 66666665
No 114
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=81.61 E-value=8.7 Score=30.21 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=58.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| + .|+ +...++..+.+ .|.+|.+++....... .+..... . ......+.+.++|.||+..|..
T Consensus 32 ~~I~iI-G--~G~---mG~~~a~~l~~-~G~~V~~~dr~~~~~~-~l~~~g~--~---~~~~~~e~~~~aDvVi~~vp~~ 98 (320)
T 4dll_A 32 RKITFL-G--TGS---MGLPMARRLCE-AGYALQVWNRTPARAA-SLAALGA--T---IHEQARAAARDADIVVSMLENG 98 (320)
T ss_dssp SEEEEE-C--CTT---THHHHHHHHHH-TTCEEEEECSCHHHHH-HHHTTTC--E---EESSHHHHHTTCSEEEECCSSH
T ss_pred CEEEEE-C--ccH---HHHHHHHHHHh-CCCeEEEEcCCHHHHH-HHHHCCC--E---eeCCHHHHHhcCCEEEEECCCH
Confidence 477776 3 343 34455555666 6888888775431101 1111000 0 0001234567899999999852
Q ss_pred CCcchHHHHHHHH--hhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 83 FGVMAAQCKAFFD--ATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 83 ~g~~~~~~k~fld--~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
..++..+. .+.. ....|+. ++.++.. . ......+...+...|..+++.+.
T Consensus 99 -----~~~~~v~~~~~~~~----~l~~~~~--vi~~st~---~-~~~~~~~~~~~~~~g~~~~~~pv 150 (320)
T 4dll_A 99 -----AVVQDVLFAQGVAA----AMKPGSL--FLDMASI---T-PREARDHAARLGALGIAHLDTPV 150 (320)
T ss_dssp -----HHHHHHHTTTCHHH----HCCTTCE--EEECSCC---C-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred -----HHHHHHHcchhHHh----hCCCCCE--EEecCCC---C-HHHHHHHHHHHHHcCCEEEeCCC
Confidence 34565554 3321 1123443 2222211 1 23345566667777888876433
No 115
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=81.35 E-value=2.9 Score=30.44 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=29.6
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhc--cCCeeEE-eccc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLK--EADGFLF-GFPS 81 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ad~ii~-gsP~ 81 (202)
|+||-.- .+.+.. +.+.+++ .|++++++...+. ..+++. ++|+||+ |.|-
T Consensus 4 i~iid~~-~s~~~~----~~~~l~~-~G~~~~v~~~~~~---------------------~~~~~~~~~~dglil~gG~~ 56 (195)
T 1qdl_B 4 TLIIDNY-DSFVYN----IAQIVGE-LGSYPIVIRNDEI---------------------SIKGIERIDPDRLIISPGPG 56 (195)
T ss_dssp EEEEECS-CSSHHH----HHHHHHH-TTCEEEEEETTTS---------------------CHHHHHHHCCSEEEECCCSS
T ss_pred EEEEECC-CchHHH----HHHHHHh-CCCEEEEEeCCCC---------------------CHHHHhhCCCCEEEECCCCC
Confidence 8887622 234443 3445555 6888888775431 233444 6999999 6553
No 116
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=81.10 E-value=2 Score=33.62 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=32.1
Q ss_pred ceEEEEEec---------------CCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYS---------------LYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S---------------~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|||+++..+ ..|..+..+..+++.+.+ .|.+|.++....
T Consensus 4 mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 57 (342)
T 2iuy_A 4 LKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLE-LGHEVFLLGAPG 57 (342)
T ss_dssp CEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHH-TTCEEEEESCTT
T ss_pred cEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 599999877 247788889999999998 899999887654
No 117
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=80.78 E-value=5.1 Score=32.60 Aligned_cols=37 Identities=5% Similarity=-0.082 Sum_probs=25.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
++||+|+.+ .|....=+-...+.+++ +|++++++...
T Consensus 12 ~~kv~ill~--dg~e~~E~~~~~~~l~~-ag~~v~~vs~~ 48 (396)
T 3uk7_A 12 SRTVLILCG--DYMEDYEVMVPFQALQA-FGITVHTVCPG 48 (396)
T ss_dssp CCEEEEECC--TTEEHHHHHHHHHHHHH-TTCEEEEECTT
T ss_pred CCeEEEEeC--CCccHHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 457887763 56555445566777777 89999988765
No 118
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=80.57 E-value=6.4 Score=28.50 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=23.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|++||+|+-+. |....=+-...+.++. .|++++++....
T Consensus 22 ~~~kV~ill~~--g~~~~e~~~~~~~l~~-ag~~v~~vs~~~ 60 (193)
T 1oi4_A 22 LSKKIAVLITD--EFEDSEFTSPADEFRK-AGHEVITIEKQA 60 (193)
T ss_dssp CCCEEEEECCT--TBCTHHHHHHHHHHHH-TTCEEEEEESST
T ss_pred cCCEEEEEECC--CCCHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 45688887653 3322222335556666 788888887654
No 119
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=80.41 E-value=5.7 Score=29.98 Aligned_cols=52 Identities=8% Similarity=-0.020 Sum_probs=34.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
+|+||-.++.+|...+.+.+ ++ .|+++.++...+. + ...+.+.++|+||+.-
T Consensus 14 ~~~~i~~~~~~~~~~i~~~l----~~-~G~~v~v~~~~~~---------------~----~~~~~l~~~Dglil~G 65 (239)
T 1o1y_A 14 RVLAIRHVEIEDLGMMEDIF----RE-KNWSFDYLDTPKG---------------E----KLERPLEEYSLVVLLG 65 (239)
T ss_dssp EEEEECSSTTSSCTHHHHHH----HH-TTCEEEEECGGGT---------------C----CCSSCGGGCSEEEECC
T ss_pred EEEEEECCCCCCchHHHHHH----Hh-CCCcEEEeCCcCc---------------c----ccccchhcCCEEEECC
Confidence 68888888888776555444 44 5777776665431 1 1345678999999964
No 120
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=80.37 E-value=2.4 Score=31.67 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=20.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
.++|+||-+ ..+++.. +.+.+++ .|+++.++...
T Consensus 24 ~~~I~iiD~-g~~~~~~----i~~~l~~-~G~~~~vv~~~ 57 (218)
T 2vpi_A 24 EGAVVILDA-GAQYGKV----IDRRVRE-LFVQSEIFPLE 57 (218)
T ss_dssp TTCEEEEEC-STTTTHH----HHHHHHH-TTCCEEEECTT
T ss_pred CCeEEEEEC-CCchHHH----HHHHHHH-CCCEEEEEECC
Confidence 347888842 2355543 4445555 67788877654
No 121
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=80.33 E-value=8.8 Score=29.97 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=59.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| ..|+ +...++..+.+ .|.+|.+++............. ... .. ...+.+.++|.||+..|..
T Consensus 10 ~~IgiI---G~G~---mG~~~A~~l~~-~G~~V~~~dr~~~~~~~~~~~g-~~~----~~-~~~e~~~~aDvVi~~vp~~ 76 (306)
T 3l6d_A 10 FDVSVI---GLGA---MGTIMAQVLLK-QGKRVAIWNRSPGKAAALVAAG-AHL----CE-SVKAALSASPATIFVLLDN 76 (306)
T ss_dssp CSEEEE---CCSH---HHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHT-CEE----CS-SHHHHHHHSSEEEECCSSH
T ss_pred CeEEEE---CCCH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHCC-Cee----cC-CHHHHHhcCCEEEEEeCCH
Confidence 467776 3454 55666777777 7888888875431111111110 000 00 1234567899999999863
Q ss_pred CCcchHHHHHHHH--hhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 83 FGVMAAQCKAFFD--ATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 83 ~g~~~~~~k~fld--~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
..++..+. .+. ....|+.+ +.++.. .. .....+...+...|..+++.
T Consensus 77 -----~~~~~v~~~~~l~-----~~~~g~iv--id~st~-~~---~~~~~l~~~~~~~g~~~vda 125 (306)
T 3l6d_A 77 -----HATHEVLGMPGVA-----RALAHRTI--VDYTTN-AQ---DEGLALQGLVNQAGGHYVKG 125 (306)
T ss_dssp -----HHHHHHHTSTTHH-----HHTTTCEE--EECCCC-CT---THHHHHHHHHHHTTCEEEEE
T ss_pred -----HHHHHHhcccchh-----hccCCCEE--EECCCC-CH---HHHHHHHHHHHHcCCeEEec
Confidence 34566664 332 12345533 222222 11 12445556667778887753
No 122
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=79.96 E-value=4.8 Score=27.48 Aligned_cols=41 Identities=12% Similarity=-0.048 Sum_probs=29.4
Q ss_pred CCceEEEEEecC-CC-hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL-YG-HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~-~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|++|++||..|. ++ .....+=.++..+.+ .|.+|.++-..+
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a-~g~eV~vFf~~d 56 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISAS-MEYETSVFFMIX 56 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHH-TTCEEEEEECTT
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEEeC
Confidence 456899888886 33 445556666777766 799999887765
No 123
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=79.71 E-value=11 Score=29.31 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=25.9
Q ss_pred ceEEEEEecC------------CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSL------------YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~------------~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||+||-.+. +|....=+-...+.++. +|++++++....
T Consensus 49 kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~-ag~~v~i~S~~g 99 (291)
T 1n57_A 49 HKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHA-AGFEFEVATISG 99 (291)
T ss_dssp CEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred CEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 5899887763 25443333345566677 799999988754
No 124
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=78.81 E-value=2.1 Score=32.23 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=17.0
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHH
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFF 94 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fl 94 (202)
.+.+.++|+|++.- |+....++.+-
T Consensus 74 ~~~l~~ad~I~lpG----G~~~~~~~~l~ 98 (229)
T 1fy2_A 74 LAAIEKAEIIIVGG----GNTFQLLKESR 98 (229)
T ss_dssp HHHHHHCSEEEECC----SCHHHHHHHHH
T ss_pred HHHHhcCCEEEECC----CcHHHHHHHHH
Confidence 37899999999874 55554444443
No 125
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=78.49 E-value=3.7 Score=28.50 Aligned_cols=41 Identities=20% Similarity=0.084 Sum_probs=27.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|++|++||..|.+-..-..+=.++..+.+ .|.+|+++-..+
T Consensus 6 m~~kl~II~~sg~~d~~~~a~~lA~~Aaa-~g~eV~iF~t~~ 46 (144)
T 2qs7_A 6 KKKKLSIIVFSGTIDKLMPVGILTSGAAA-SGYEVNLFFTFW 46 (144)
T ss_dssp -CCEEEEEECCCSHHHHHHHHHHHHHHHH-TTCEEEEEECHH
T ss_pred ccCCEEEEEEcCCHHHHHHHHHHHHHHHH-cCCcEEEEEehH
Confidence 56689999988764333344455666666 789999887654
No 126
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=78.44 E-value=13 Score=27.14 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=38.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| + .|+ +...++..+.+ .|.+|.+++... . .+.++|.||+..|.+
T Consensus 20 ~~I~ii-G--~G~---mG~~la~~l~~-~g~~V~~~~~~~---------------------~---~~~~aD~vi~av~~~ 68 (209)
T 2raf_A 20 MEITIF-G--KGN---MGQAIGHNFEI-AGHEVTYYGSKD---------------------Q---ATTLGEIVIMAVPYP 68 (209)
T ss_dssp CEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECTTC---------------------C---CSSCCSEEEECSCHH
T ss_pred CEEEEE-C--CCH---HHHHHHHHHHH-CCCEEEEEcCCH---------------------H---HhccCCEEEEcCCcH
Confidence 367665 2 454 55666777776 788887765422 1 467899999999943
Q ss_pred CCcchHHHHHHHHhhh
Q 028917 83 FGVMAAQCKAFFDATY 98 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~ 98 (202)
.++.+++.+.
T Consensus 69 ------~~~~v~~~l~ 78 (209)
T 2raf_A 69 ------ALAALAKQYA 78 (209)
T ss_dssp ------HHHHHHHHTH
T ss_pred ------HHHHHHHHHH
Confidence 4666776664
No 127
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=78.23 E-value=3.2 Score=33.06 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=28.0
Q ss_pred CceEEEEEe--cCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 2 ATKIYIVYY--SLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 2 ~~kiliiy~--S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|+|++||+- |..|...++.+.+.+.+++ .|++++++.-
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~-~g~~~~~~~t 63 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEK-AGYETSAYAT 63 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHH-TTEEEEEEEC
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHH-cCCeEEEEEe
Confidence 456777774 3345677888999999998 8988877654
No 128
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=78.16 E-value=7.3 Score=29.57 Aligned_cols=86 Identities=16% Similarity=0.034 Sum_probs=45.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|||||+|. |+ | .+...+++.|.+ .|.+|..+.-............-.... -|+.+ .+ +..+|.||...+
T Consensus 4 m~~~ilVt-Ga--G---~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~-~D~~d--~~-~~~~d~vi~~a~ 72 (286)
T 3ius_A 4 MTGTLLSF-GH--G---YTARVLSRALAP-QGWRIIGTSRNPDQMEAIRASGAEPLL-WPGEE--PS-LDGVTHLLISTA 72 (286)
T ss_dssp -CCEEEEE-TC--C---HHHHHHHHHHGG-GTCEEEEEESCGGGHHHHHHTTEEEEE-SSSSC--CC-CTTCCEEEECCC
T ss_pred CcCcEEEE-CC--c---HHHHHHHHHHHH-CCCEEEEEEcChhhhhhHhhCCCeEEE-ecccc--cc-cCCCCEEEECCC
Confidence 67787774 32 4 466777777777 788887766443211111110000000 12221 22 778999999876
Q ss_pred ccCCcchHHHHHHHHhhh
Q 028917 81 SRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~ 98 (202)
..... .+..+++++.+.
T Consensus 73 ~~~~~-~~~~~~l~~a~~ 89 (286)
T 3ius_A 73 PDSGG-DPVLAALGDQIA 89 (286)
T ss_dssp CBTTB-CHHHHHHHHHHH
T ss_pred ccccc-cHHHHHHHHHHH
Confidence 55443 234577777663
No 129
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=78.03 E-value=9.7 Score=29.33 Aligned_cols=34 Identities=26% Similarity=0.103 Sum_probs=21.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|||||.|| | .|+ +...++..+.+ .|.+|.+++-.
T Consensus 2 ~~m~i~ii-G--~G~---~G~~~a~~l~~-~g~~V~~~~r~ 35 (316)
T 2ew2_A 2 NAMKIAIA-G--AGA---MGSRLGIMLHQ-GGNDVTLIDQW 35 (316)
T ss_dssp --CEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECSC
T ss_pred CCCeEEEE-C--cCH---HHHHHHHHHHh-CCCcEEEEECC
Confidence 45588876 3 354 55566666666 78888887653
No 130
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=77.84 E-value=7.6 Score=30.34 Aligned_cols=120 Identities=14% Similarity=0.063 Sum_probs=58.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|++||-+| .-|+ |-..++..|.+ .|.+|..+|.....-...... .. .......+.+..+|.||+.-|
T Consensus 4 Ms~kIgfI---GLG~---MG~~mA~~L~~-~G~~V~v~dr~~~~~~~l~~~-G~-----~~~~s~~e~~~~~dvvi~~l~ 70 (297)
T 4gbj_A 4 MSEKIAFL---GLGN---LGTPIAEILLE-AGYELVVWNRTASKAEPLTKL-GA-----TVVENAIDAITPGGIVFSVLA 70 (297)
T ss_dssp CCCEEEEE---CCST---THHHHHHHHHH-TTCEEEEC-------CTTTTT-TC-----EECSSGGGGCCTTCEEEECCS
T ss_pred CCCcEEEE---ecHH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHc-CC-----eEeCCHHHHHhcCCceeeecc
Confidence 77788777 3343 33445555555 789999888754210000000 00 000012345678999998888
Q ss_pred ccCCcchHHHHHHH-HhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028917 81 SRFGVMAAQCKAFF-DATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYT 148 (202)
Q Consensus 81 ~y~g~~~~~~k~fl-d~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 148 (202)
.. ..+...+ ..+.. ..-+|+. .+-.++.. ..+...+...+..+|..+++.+..
T Consensus 71 ~~-----~~~~~v~~~~~~~----~~~~~~i-iid~sT~~-----p~~~~~~~~~~~~~g~~~ldapVs 124 (297)
T 4gbj_A 71 DD-----AAVEELFSMELVE----KLGKDGV-HVSMSTIS-----PETSRQLAQVHEWYGAHYVGAPIF 124 (297)
T ss_dssp SH-----HHHHHHSCHHHHH----HHCTTCE-EEECSCCC-----HHHHHHHHHHHHHTTCEEEECCEE
T ss_pred ch-----hhHHHHHHHHHHh----hcCCCeE-EEECCCCC-----hHHHHHHHHHHHhcCCceecCCcC
Confidence 62 2333322 11211 1123442 23222222 234667778888999999976553
No 131
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=77.49 E-value=8.8 Score=27.08 Aligned_cols=96 Identities=13% Similarity=-0.021 Sum_probs=46.0
Q ss_pred CCceEEEEEecC-CC---hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhh----hccC
Q 028917 1 MATKIYIVYYSL-YG---HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQ----LKEA 72 (202)
Q Consensus 1 M~~kiliiy~S~-~G---~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~a 72 (202)
|++||+|+-+-. +| .. ..+.+. + .|++++++......+- .....-... ++...++ ..++
T Consensus 1 m~~~v~ill~~~~~g~~~~~--~~e~~~----~-~~~~v~~vs~~~~~~v--~~~~g~~v~----~d~~~~~~~~~~~~~ 67 (175)
T 3cne_A 1 MAKKVAVLAVNPVNGCGLFQ--YLEAFF----E-NGISYKVFAVSDTKEI--KTNSGMVLI----VDDVIANLKGHEDEF 67 (175)
T ss_dssp -CCEEEEEECSSBCHHHHHH--HHHHHH----H-TTCEEEEEESSSSSEE--EBTTSCEEE----CSEEGGGGTTCGGGC
T ss_pred CCcEEEEEEecCcCCCccch--hhheee----e-CCCEEEEEECCCCCce--ecCCCeEEE----eccCHHHhccCcccC
Confidence 777888876541 24 22 233333 4 6889998887531110 000000000 0011233 3789
Q ss_pred CeeEEecc----cc-CCc---chHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 73 DGFLFGFP----SR-FGV---MAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 73 d~ii~gsP----~y-~g~---~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
|.||+-.. -. .-. ..+.+..|+.+.. -++|+++.+++
T Consensus 68 D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~-------~~gk~i~aiC~ 112 (175)
T 3cne_A 68 DALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFG-------EKGKMMIGHCA 112 (175)
T ss_dssp SEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHH-------HTTCEEEEETT
T ss_pred CEEEECCCcCcccHHHHhhcccCHHHHHHHHHHH-------HCCCEEEEECH
Confidence 99998643 11 111 3455666666653 25777666654
No 132
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=77.20 E-value=2.1 Score=33.66 Aligned_cols=39 Identities=8% Similarity=0.048 Sum_probs=28.9
Q ss_pred CceEEEEE--ecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 2 ATKIYIVY--YSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy--~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+|+++|+ .|..|...++.+.+.+.+++ .|++++++...
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~-~~~~~~~~~t~ 48 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAA-AFPDLHILHTK 48 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHH-HCSEEEEEECC
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHH-cCCeEEEEEcc
Confidence 45777776 34456677888899999998 88888876644
No 133
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=76.82 E-value=2 Score=31.77 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=25.4
Q ss_pred ccCCeeEEe-ccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 70 KEADGFLFG-FPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 70 ~~ad~ii~g-sP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
.++|.||+. .+.... ..+.+..|+.+.. -++|+++.+++
T Consensus 62 ~~~D~livpGG~~~~~-~~~~l~~~l~~~~-------~~gk~iaaiC~ 101 (206)
T 3f5d_A 62 ANFNLLVMIGGDSWSN-DNKKLLHFVKTAF-------QKNIPIAAICG 101 (206)
T ss_dssp SCCSEEEECCBSCCCC-CCHHHHHHHHHHH-------HTTCCEEEETH
T ss_pred cCCCEEEEcCCCChhh-cCHHHHHHHHHHH-------HcCCEEEEECH
Confidence 478999984 222222 5667788887763 26788777765
No 134
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=76.80 E-value=6.8 Score=30.25 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=44.0
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCc---eEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGV---EATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~---~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
++||.|| ..|+ +...++..+.+ .|. +|.+++.....- ....... ... -.. ...+.+.++|.||++
T Consensus 3 ~~~I~iI---G~G~---mG~aia~~l~~-~g~~~~~V~v~dr~~~~~-~~l~~~~-gi~--~~~-~~~~~~~~aDvVila 70 (280)
T 3tri_A 3 TSNITFI---GGGN---MARNIVVGLIA-NGYDPNRICVTNRSLDKL-DFFKEKC-GVH--TTQ-DNRQGALNADVVVLA 70 (280)
T ss_dssp CSCEEEE---SCSH---HHHHHHHHHHH-TTCCGGGEEEECSSSHHH-HHHHHTT-CCE--EES-CHHHHHSSCSEEEEC
T ss_pred CCEEEEE---cccH---HHHHHHHHHHH-CCCCCCeEEEEeCCHHHH-HHHHHHc-CCE--EeC-ChHHHHhcCCeEEEE
Confidence 3577777 3465 66777777776 676 777776543111 1111110 000 000 124567899999999
Q ss_pred ccccCCcchHHHHHHHHhhh
Q 028917 79 FPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 79 sP~y~g~~~~~~k~fld~~~ 98 (202)
.|.+ .++..++.+.
T Consensus 71 v~p~------~~~~vl~~l~ 84 (280)
T 3tri_A 71 VKPH------QIKMVCEELK 84 (280)
T ss_dssp SCGG------GHHHHHHHHH
T ss_pred eCHH------HHHHHHHHHH
Confidence 9763 4566666664
No 135
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=76.61 E-value=4 Score=26.90 Aligned_cols=39 Identities=13% Similarity=0.062 Sum_probs=28.9
Q ss_pred ceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+..+++|+++ -+.++.+...+.+..++ .|++++.+|+.+
T Consensus 29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e-~~i~~~~vDId~ 68 (107)
T 2fgx_A 29 PRKLVVYGREGCHLCEEMIASLRVLQKK-SWFELEVINIDG 68 (107)
T ss_dssp CCCEEEEECSSCHHHHHHHHHHHHHHHH-SCCCCEEEETTT
T ss_pred ccEEEEEeCCCChhHHHHHHHHHHHHHh-cCCeEEEEECCC
Confidence 3456667665 57888888877777776 688888889875
No 136
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=76.51 E-value=2.4 Score=32.02 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=43.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCc----eEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGV----EATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFL 76 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~----~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii 76 (202)
|++||.|| ..|+ +...++..+.+ .|. ++.+++.................. . ...+.+.++|.||
T Consensus 1 M~~~i~iI---G~G~---mG~~~a~~l~~-~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~----~-~~~e~~~~aDvVi 68 (247)
T 3gt0_A 1 MDKQIGFI---GCGN---MGMAMIGGMIN-KNIVSSNQIICSDLNTANLKNASEKYGLTTT----T-DNNEVAKNADILI 68 (247)
T ss_dssp CCCCEEEE---CCSH---HHHHHHHHHHH-TTSSCGGGEEEECSCHHHHHHHHHHHCCEEC----S-CHHHHHHHCSEEE
T ss_pred CCCeEEEE---CccH---HHHHHHHHHHh-CCCCCCCeEEEEeCCHHHHHHHHHHhCCEEe----C-ChHHHHHhCCEEE
Confidence 77788887 3565 66667777766 676 788776543111111111011000 0 1234577899999
Q ss_pred EeccccCCcchHHHHHHHHhh
Q 028917 77 FGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 77 ~gsP~y~g~~~~~~k~fld~~ 97 (202)
+..|.+ .++..++.+
T Consensus 69 lav~~~------~~~~v~~~l 83 (247)
T 3gt0_A 69 LSIKPD------LYASIINEI 83 (247)
T ss_dssp ECSCTT------THHHHC---
T ss_pred EEeCHH------HHHHHHHHH
Confidence 999754 355666555
No 137
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=76.33 E-value=4.2 Score=30.07 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=29.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
|+ ||+++..- .+++..+++++ ++ .|+++.++...+ ..+++.++|+|||.
T Consensus 13 ~~-~i~~id~~-~~~~~~~~~~l----~~-~G~~~~vv~~~~----------------------~~~~l~~~DglIl~ 61 (212)
T 2a9v_A 13 ML-KIYVVDNG-GQWTHREWRVL----RE-LGVDTKIVPNDI----------------------DSSELDGLDGLVLS 61 (212)
T ss_dssp CC-BEEEEEES-CCTTCHHHHHH----HH-TTCBCCEEETTS----------------------CGGGGTTCSEEEEE
T ss_pred cc-eEEEEeCC-CccHHHHHHHH----HH-CCCEEEEEeCCC----------------------CHHHHhCCCEEEEC
Confidence 44 88887633 33455455444 44 577777766532 23456669999985
No 138
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=76.08 E-value=16 Score=29.35 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=44.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCC--CCCCCCc-----CC-hhhhccCCe
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPP--KTNDVPV-----IR-PHQLKEADG 74 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~--~~~~~~~-----~~-~~~l~~ad~ 74 (202)
|||.|| + .|+ +...++..+.+ .|.+|.+++..+.......+....+. ....++. .. .+.+.++|.
T Consensus 30 mkI~VI-G--aG~---mG~alA~~La~-~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAIL-G--AGS---WGTALALVLAR-KGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEE-C--CSH---HHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEE-C--ccH---HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 477776 2 344 45566667766 78889888764211111111110000 0001110 01 245678999
Q ss_pred eEEeccccCCcchHHHHHHHHhhh
Q 028917 75 FLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 75 ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
||++.|.+ .++.+++.+.
T Consensus 103 VilaVp~~------~~~~vl~~i~ 120 (356)
T 3k96_A 103 ILIVVPSF------AFHEVITRMK 120 (356)
T ss_dssp EEECCCHH------HHHHHHHHHG
T ss_pred EEECCCHH------HHHHHHHHHH
Confidence 99999985 5677777764
No 139
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=75.54 E-value=15 Score=32.41 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=57.4
Q ss_pred CceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 2 ATKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 2 ~~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
.+||+|+.. .| ..+.-+..+.+.|++ +|++|+++..... . + . |.. ..-..-..+|+||+-..
T Consensus 537 grKVaILva--dG~fE~~El~~p~~aL~~-aGa~V~vVsp~~g-~-G--------v---D~t-~~~~~s~~fDAVvlPGG 599 (688)
T 3ej6_A 537 TLRVGVLST--TKGGSLDKAKALKEQLEK-DGLKVTVIAEYLA-S-G--------V---DQT-YSAADATAFDAVVVAEG 599 (688)
T ss_dssp TCEEEEECC--SSSSHHHHHHHHHHHHHH-TTCEEEEEESSCC-T-T--------C---CEE-TTTCCGGGCSEEEECTT
T ss_pred CCEEEEEcc--CCCccHHHHHHHHHHHHH-CCCEEEEEeCCCC-C-C--------c---ccC-cccCChhcCcEEEECCC
Confidence 457888753 56 566677888899999 9999999876542 0 0 0 111 01234568999999433
Q ss_pred ccC----------CcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 81 SRF----------GVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 81 ~y~----------g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
.-. -...+.+..|+..... .+|+++.++.
T Consensus 600 ~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~-------hgKpIAAIch 638 (688)
T 3ej6_A 600 AERVFSGKGAMSPLFPAGRPSQILTDGYR-------WGKPVAAVGS 638 (688)
T ss_dssp CCTTTSTTTTCCTTSCTTHHHHHHHHHHH-------TTCCEEEEGG
T ss_pred cccccccccchhhhccCHHHHHHHHHHHH-------cCCEEEEeCc
Confidence 211 2234566777776632 6899988864
No 140
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=75.06 E-value=6 Score=28.60 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=8.8
Q ss_pred hhccCCeeEEe
Q 028917 68 QLKEADGFLFG 78 (202)
Q Consensus 68 ~l~~ad~ii~g 78 (202)
++.++|+||+.
T Consensus 35 ~l~~~d~iil~ 45 (196)
T 2nv0_A 35 QLNEVDGLILP 45 (196)
T ss_dssp GGGGCSEEEEC
T ss_pred HHhhCCEEEEC
Confidence 46789999985
No 141
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=74.02 E-value=5.2 Score=28.20 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=46.0
Q ss_pred CCceEEEEEecC-----------CCh--HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChh
Q 028917 1 MATKIYIVYYSL-----------YGH--VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPH 67 (202)
Q Consensus 1 M~~kiliiy~S~-----------~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (202)
||+||+|+++=. +|+ -+.+.+.+.+.+.+ .|++++++.-+. ..+.+. .+.+
T Consensus 6 ~m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~~~~~QSN~--EgeLId-------------~Ih~ 69 (153)
T 3lwz_A 6 DKFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQG-MDVALSHLQSNA--EHALID-------------SIHQ 69 (153)
T ss_dssp -CEEEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHH-TTEEEEEEECSC--HHHHHH-------------HHHH
T ss_pred ccCeEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCC--HHHHHH-------------HHHH
Confidence 356899998742 343 35566677777777 798888877643 111110 1223
Q ss_pred hhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 68 QLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 68 ~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
...++|+||+=.--|.. .+-.+..-+..+
T Consensus 70 a~~~~dgiiINpgA~TH-tSvAlrDAl~~~ 98 (153)
T 3lwz_A 70 ARGNTDFILINPAAFTH-TSVALRDALLGV 98 (153)
T ss_dssp HTTTCSEEEEECGGGGG-TCHHHHHHHHHH
T ss_pred hhhcCceEEEcccccee-chHHHHHHHHhc
Confidence 34568999987666642 233455555443
No 142
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=73.45 E-value=11 Score=29.48 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=36.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCC----CCCCC---CCC-cCChhhhccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKA----PPKTN---DVP-VIRPHQLKEA 72 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~----~~~~~---~~~-~~~~~~l~~a 72 (202)
|++||+|| |. |+ +...++..+.+ .|.+|.+++-.. .+.+....- ...+. ... ....+.+..+
T Consensus 1 M~mkI~Ii-Ga--Ga---iG~~~a~~L~~-~g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~ 70 (312)
T 3hn2_A 1 MSLRIAIV-GA--GA---LGLYYGALLQR-SGEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPM 70 (312)
T ss_dssp ---CEEEE-CC--ST---THHHHHHHHHH-TSCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCHHHHCCC
T ss_pred CCCEEEEE-Cc--CH---HHHHHHHHHHH-CCCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCHHHcCCC
Confidence 77799987 33 33 22344555555 677888876443 122211100 00000 000 0124457789
Q ss_pred CeeEEeccccC
Q 028917 73 DGFLFGFPSRF 83 (202)
Q Consensus 73 d~ii~gsP~y~ 83 (202)
|.||+++|.+.
T Consensus 71 D~vilavk~~~ 81 (312)
T 3hn2_A 71 DLVLVGLKTFA 81 (312)
T ss_dssp SEEEECCCGGG
T ss_pred CEEEEecCCCC
Confidence 99999999985
No 143
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=73.43 E-value=3.8 Score=31.41 Aligned_cols=15 Identities=13% Similarity=0.078 Sum_probs=12.6
Q ss_pred ChhhhccCCeeEEec
Q 028917 65 RPHQLKEADGFLFGF 79 (202)
Q Consensus 65 ~~~~l~~ad~ii~gs 79 (202)
..+.+.++|.||+.-
T Consensus 71 ~~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 71 SIDELNRYDVIVISD 85 (256)
T ss_dssp SHHHHHTCSEEEEES
T ss_pred ChhHHhcCCEEEEeC
Confidence 457899999999985
No 144
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=73.36 E-value=6.6 Score=31.53 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=32.5
Q ss_pred CceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|||+++..+. .|..++.+..+++.+.+ .|.+|.++-+..
T Consensus 40 ~mkIl~v~~~~~~GG~~~~~~~l~~~L~~-~G~~v~v~~~~~ 80 (416)
T 2x6q_A 40 GRSFVHVNSTSFGGGVAEILHSLVPLLRS-IGIEARWFVIEG 80 (416)
T ss_dssp TCEEEEEESCSSSSTHHHHHHHHHHHHHH-TTCEEEEEECCC
T ss_pred ccEEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 35899988776 47788888889999998 899999877654
No 145
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=72.58 E-value=14 Score=32.97 Aligned_cols=102 Identities=9% Similarity=-0.028 Sum_probs=59.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc-
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP- 80 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP- 80 (202)
.+||+|+.. .|..+.-+..+.+.|++ +|++|+++..... + +......... .|.. .....-..+|+|||-.-
T Consensus 600 grKVaILla--DGfEe~El~~pvdaLr~-AG~~V~vVS~~~g-~--V~gs~G~~V~-aD~t-~~~v~s~~fDALVVPGGg 671 (753)
T 3ttv_A 600 GRVVAILLN--DEVRSADLLAILKALKA-KGVHAKLLYSRMG-E--VTADDGTVLP-IAAT-FAGAPSLTVDAVIVPCGN 671 (753)
T ss_dssp TCEEEEECC--TTCCHHHHHHHHHHHHH-HTCEEEEEESSSS-E--EECTTSCEEE-CCEE-TTTSCGGGCSEEEECCSC
T ss_pred CCEEEEEec--CCCCHHHHHHHHHHHHH-CCCEEEEEEcCCC-e--EEeCCCCEEe-cccc-hhhCCCcCCCEEEECCCC
Confidence 457888753 57777677788889988 8999999887541 0 0000000000 0100 00112356899999543
Q ss_pred ccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecC
Q 028917 81 SRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTG 118 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g 118 (202)
.-.-...+.+..|+.+.. -.+|+++.++.+.
T Consensus 672 ~~~Lr~d~~vl~~Vre~~-------~~gKpIAAIC~Gp 702 (753)
T 3ttv_A 672 IADIADNGDANYYLMEAY-------KHLKPIALAGDAR 702 (753)
T ss_dssp GGGTTTCHHHHHHHHHHH-------HTTCCEEEEGGGG
T ss_pred hHHhhhCHHHHHHHHHHH-------hcCCeEEEECchH
Confidence 111234567788887764 2689998887644
No 146
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=72.24 E-value=6.3 Score=32.00 Aligned_cols=39 Identities=15% Similarity=0.030 Sum_probs=24.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+||+|+.+. |....=+-...+.++. +|++++++....
T Consensus 9 ~mkkV~ILl~d--gf~~~El~~p~dvL~~-Ag~~v~vvS~~~ 47 (365)
T 3fse_A 9 GKKKVAILIEQ--AVEDTEFIIPCNGLKQ-AGFEVVVLGSRM 47 (365)
T ss_dssp --CEEEEECCT--TBCHHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred CceEEEEEECC--CCcHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 45688877643 5444444455677777 788999887754
No 147
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=71.54 E-value=11 Score=28.32 Aligned_cols=85 Identities=13% Similarity=-0.014 Sum_probs=42.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC---cCChhhhccCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP---VIRPHQLKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ad~ii~ 77 (202)
|++||.|+-+- |.+..=+-...+.++...|.+++++..... + +. +. .++. +...+++.++|.||+
T Consensus 4 m~~~V~ill~~--gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-~---V~---~~---~G~~v~~d~~l~~~~~~D~liv 71 (231)
T 3noq_A 4 MAVQIGFLLFP--EVQQLDLTGPHDVLASLPDVQVHLIWKEPG-P---VV---AS---SGLVLQATTSFADCPPLDVICI 71 (231)
T ss_dssp CCEEEEEECCT--TCCHHHHHHHHHHHTTSTTEEEEEEESSSE-E---EE---CT---TSCEEEECEETTTCCCCSEEEE
T ss_pred CcEEEEEEEeC--CCcHHHHHHHHHHHHcCCCCEEEEEECCCC-c---EE---cC---CCCEEecccChhHCCcCCEEEE
Confidence 77788887643 433333333455555425778888776431 1 00 00 0110 012344567999998
Q ss_pred ecc--ccCCcchHHHHHHHHhh
Q 028917 78 GFP--SRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 78 gsP--~y~g~~~~~~k~fld~~ 97 (202)
..- ...-.-.+.+..|+.+.
T Consensus 72 pGG~g~~~~~~~~~l~~~lr~~ 93 (231)
T 3noq_A 72 PGGTGVGALMEDPQALAFIRQQ 93 (231)
T ss_dssp CCSTTHHHHTTCHHHHHHHHHH
T ss_pred CCCCChhhhccCHHHHHHHHHH
Confidence 532 11112345667777665
No 148
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=71.44 E-value=15 Score=29.51 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=18.6
Q ss_pred hhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 67 HQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
+.+.++|.||+..|.+ .++..++.+
T Consensus 99 ea~~~aDvVilav~~~------~~~~vl~~i 123 (375)
T 1yj8_A 99 SVINDADLLIFIVPCQ------YLESVLASI 123 (375)
T ss_dssp HHHTTCSEEEECCCHH------HHHHHHHHH
T ss_pred HHHcCCCEEEEcCCHH------HHHHHHHHH
Confidence 3467899999999974 466666655
No 149
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=71.16 E-value=6.5 Score=31.24 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=31.3
Q ss_pred CceEEEEEecC---CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSL---YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~---~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||||+++.... .|..+..+..+++.+.+ .|.+|.++....
T Consensus 20 ~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~~ 62 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGVQSHVLQLAEVLRD-AGHEVSVLAPAS 62 (406)
T ss_dssp -CEEEEECSSCTTSCCHHHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred cceEEEEeccCCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 45999988542 37778888899999998 899999987754
No 150
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=71.03 E-value=6.6 Score=26.19 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
+|.+...+..+++.+++ .|+++.++++....|
T Consensus 21 ~Gs~~~~a~eA~~~L~~-~Gi~v~vi~~r~~~P 52 (118)
T 3ju3_A 21 WGSQKGPILDVIEDLKE-EGISANLLYLKMFSP 52 (118)
T ss_dssp EGGGHHHHHHHHHHHHH-TTCCEEEEEECSSCS
T ss_pred ECccHHHHHHHHHHHHH-CCCceEEEEECeEec
Confidence 34555566666677777 799999999987644
No 151
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=71.01 E-value=26 Score=27.26 Aligned_cols=69 Identities=12% Similarity=0.123 Sum_probs=37.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCc-eEEEEEccC-CCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGV-EATLWQVPE-TLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~-~v~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
+||.|| ..|+ +...++..+.+ .|. +|.+++... ............... . ...+.+.++|.||+..|
T Consensus 25 ~~I~iI---G~G~---mG~~~A~~L~~-~G~~~V~~~dr~~~~~~~~~~~~~g~~~~----~-~~~e~~~~aDvVi~~vp 92 (312)
T 3qsg_A 25 MKLGFI---GFGE---AASAIASGLRQ-AGAIDMAAYDAASAESWRPRAEELGVSCK----A-SVAEVAGECDVIFSLVT 92 (312)
T ss_dssp CEEEEE---CCSH---HHHHHHHHHHH-HSCCEEEEECSSCHHHHHHHHHHTTCEEC----S-CHHHHHHHCSEEEECSC
T ss_pred CEEEEE---CccH---HHHHHHHHHHH-CCCCeEEEEcCCCCHHHHHHHHHCCCEEe----C-CHHHHHhcCCEEEEecC
Confidence 477776 3454 55566666666 687 888887741 000011111110000 0 12345789999999999
Q ss_pred ccC
Q 028917 81 SRF 83 (202)
Q Consensus 81 ~y~ 83 (202)
...
T Consensus 93 ~~~ 95 (312)
T 3qsg_A 93 AQA 95 (312)
T ss_dssp TTT
T ss_pred chh
Confidence 864
No 152
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=70.92 E-value=5.8 Score=30.70 Aligned_cols=40 Identities=13% Similarity=0.030 Sum_probs=30.0
Q ss_pred CceEEEEEecCCC---hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYG---HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|||+|+++..+. -+-.-++.+++.+++ .|+++..+++.+
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDK-NKYEIVPITLNE 45 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCT-TTEEEEEEECSS
T ss_pred CcEEEEEeCCCCcchHhHHHHHHHHHHHHHH-CCCEEEEEcccC
Confidence 3589999976532 233457788999998 899999988864
No 153
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=70.91 E-value=11 Score=30.60 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=24.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|++||+|+.+ .|....=+-...+.+++ +|++++++...
T Consensus 204 ~~~ki~ill~--dg~~~~e~~~~~~~l~~-ag~~v~~vs~~ 241 (396)
T 3uk7_A 204 ANKRILFLCG--DYMEDYEVKVPFQSLQA-LGCQVDAVCPE 241 (396)
T ss_dssp CCCEEEEECC--TTEEHHHHHHHHHHHHH-HTCEEEEECTT
T ss_pred ccceEEEEec--CCCcchhHHHHHHHHHH-CCCEEEEECCC
Confidence 4567887764 45444444456666676 78888887654
No 154
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=70.51 E-value=18 Score=28.25 Aligned_cols=73 Identities=12% Similarity=0.053 Sum_probs=37.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc-----CCCCCCC---CCCc-CChhhhc-
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKM-----KAPPKTN---DVPV-IRPHQLK- 70 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~-----~~~~~~~---~~~~-~~~~~l~- 70 (202)
|+|||+|| | .|+ +...++..+.+ .|.+|.+++-.+ . +.+... .+...+. .... ...+.+.
T Consensus 1 M~mkI~Ii-G--aGa---iG~~~a~~L~~-~g~~V~~~~r~~-~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~ 70 (320)
T 3i83_A 1 MSLNILVI-G--TGA---IGSFYGALLAK-TGHCVSVVSRSD-Y--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELET 70 (320)
T ss_dssp --CEEEEE-S--CCH---HHHHHHHHHHH-TTCEEEEECSTT-H--HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSS
T ss_pred CCCEEEEE-C--cCH---HHHHHHHHHHh-CCCeEEEEeCCh-H--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCC
Confidence 77799987 3 343 33455556666 688888876543 1 222111 0000000 0000 1233444
Q ss_pred cCCeeEEeccccC
Q 028917 71 EADGFLFGFPSRF 83 (202)
Q Consensus 71 ~ad~ii~gsP~y~ 83 (202)
.+|.||+++|.+.
T Consensus 71 ~~DlVilavK~~~ 83 (320)
T 3i83_A 71 KPDCTLLCIKVVE 83 (320)
T ss_dssp CCSEEEECCCCCT
T ss_pred CCCEEEEecCCCC
Confidence 8999999999996
No 155
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=70.27 E-value=45 Score=27.61 Aligned_cols=90 Identities=13% Similarity=0.042 Sum_probs=45.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCC-------------CCCc-CCh
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTN-------------DVPV-IRP 66 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~ 66 (202)
|+|||.|| | .|+ +...++..+.+ .|.+|..++....... .+.....+.... .+.. ...
T Consensus 1 M~mkI~VI-G--~G~---vG~~lA~~La~-~G~~V~~~D~~~~~v~-~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~ 72 (450)
T 3gg2_A 1 MSLDIAVV-G--IGY---VGLVSATCFAE-LGANVRCIDTDRNKIE-QLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEI 72 (450)
T ss_dssp -CCEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECSCHHHHH-HHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCH
T ss_pred CCCEEEEE-C--cCH---HHHHHHHHHHh-cCCEEEEEECCHHHHH-HHHcCCCcccCCCHHHHHHhhcccCcEEEECCH
Confidence 76788887 3 344 33445555556 6888998887542111 111111111100 0000 122
Q ss_pred h-hhccCCeeEEeccccCC---cc-hHHHHHHHHhhh
Q 028917 67 H-QLKEADGFLFGFPSRFG---VM-AAQCKAFFDATY 98 (202)
Q Consensus 67 ~-~l~~ad~ii~gsP~y~g---~~-~~~~k~fld~~~ 98 (202)
. .+.++|.||+..|+... .. -..+...++.+.
T Consensus 73 ~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~ 109 (450)
T 3gg2_A 73 EQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIG 109 (450)
T ss_dssp HHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHH
Confidence 3 47889999999988632 10 124566666554
No 156
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=69.57 E-value=27 Score=24.89 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=19.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|| |+||-+- .+++..+++.+ ++ .|+++.++...
T Consensus 1 mm--i~iid~~-~~~~~~~~~~l----~~-~G~~~~~~~~~ 33 (189)
T 1wl8_A 1 MM--IVIMDNG-GQYVHRIWRTL----RY-LGVETKIIPNT 33 (189)
T ss_dssp CE--EEEEECS-CTTHHHHHHHH----HH-TTCEEEEEETT
T ss_pred Ce--EEEEECC-CchHHHHHHHH----HH-CCCeEEEEECC
Confidence 55 7777532 45666555444 45 68888877653
No 157
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=68.73 E-value=36 Score=25.87 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=18.3
Q ss_pred hhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 67 HQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
+.+.++|.||++.|.. .++.+++.+
T Consensus 62 ~~~~~aDvVilavp~~------~~~~v~~~l 86 (290)
T 3b1f_A 62 VFAALADVIILAVPIK------KTIDFIKIL 86 (290)
T ss_dssp TTGGGCSEEEECSCHH------HHHHHHHHH
T ss_pred HhhcCCCEEEEcCCHH------HHHHHHHHH
Confidence 3467899999999975 346666665
No 158
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=68.49 E-value=37 Score=25.91 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=53.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| + .|+ +...++..+.+ .|.+|.+++...... ..+.... .. ... ...+.+.++|.||+.+|.-
T Consensus 5 ~~i~ii-G--~G~---~G~~~a~~l~~-~g~~V~~~~~~~~~~-~~~~~~g--~~--~~~-~~~~~~~~~D~vi~~vp~~ 71 (301)
T 3cky_A 5 IKIGFI-G--LGA---MGKPMAINLLK-EGVTVYAFDLMEANV-AAVVAQG--AQ--ACE-NNQKVAAASDIIFTSLPNA 71 (301)
T ss_dssp CEEEEE-C--CCT---THHHHHHHHHH-TTCEEEEECSSHHHH-HHHHTTT--CE--ECS-SHHHHHHHCSEEEECCSSH
T ss_pred CEEEEE-C--ccH---HHHHHHHHHHH-CCCeEEEEeCCHHHH-HHHHHCC--Ce--ecC-CHHHHHhCCCEEEEECCCH
Confidence 467776 3 343 33344555555 677777765432100 1111100 00 000 1234467899999999852
Q ss_pred CCcchHHHHHHHH---hhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 83 FGVMAAQCKAFFD---ATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 83 ~g~~~~~~k~fld---~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
..++..+. .+.. .+ .|+. ++..+. +. ......+...+...|..+++.
T Consensus 72 -----~~~~~v~~~~~~l~~-----~l~~~~~--vv~~~~---~~-~~~~~~l~~~~~~~g~~~~~~ 122 (301)
T 3cky_A 72 -----GIVETVMNGPGGVLS-----ACKAGTV--IVDMSS---VS-PSSTLKMAKVAAEKGIDYVDA 122 (301)
T ss_dssp -----HHHHHHHHSTTCHHH-----HSCTTCE--EEECCC---CC-HHHHHHHHHHHHHTTCEEEEC
T ss_pred -----HHHHHHHcCcchHhh-----cCCCCCE--EEECCC---CC-HHHHHHHHHHHHHcCCeEEEc
Confidence 23555553 3321 23 3443 222221 11 123455556666667777653
No 159
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=68.33 E-value=20 Score=25.48 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=48.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHh---hcCCCCCCCCCCcCChhhh--ccCCeeEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQ---KMKAPPKTNDVPVIRPHQL--KEADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l--~~ad~ii~ 77 (202)
+||+|+-+ .|....=+-...+.++. .|++++++........ ... ...-... ++...+++ .++|.||+
T Consensus 10 ~~v~il~~--~g~~~~e~~~~~~~l~~-ag~~v~~vs~~~~~v~-~~~~~~~~g~~v~----~~~~~~~~~~~~~D~liv 81 (190)
T 2vrn_A 10 KKIAILAA--DGVEEIELTSPRAAIEA-AGGTTELISLEPGEIQ-SMKGDIEPQEKYR----VDHVVSEVQVSDYDGLLL 81 (190)
T ss_dssp CEEEEECC--TTCBHHHHHHHHHHHHH-TTCEEEEEESSSSEEE-EEETTTEEEEEEE----CSEEGGGCCGGGCSEEEE
T ss_pred CEEEEEeC--CCCCHHHHHHHHHHHHH-CCCEEEEEecCCCccc-cccccccCCcEEe----CCCChhhCChhhCCEEEE
Confidence 47887754 34333333345566666 7888888876431000 000 0000000 00112333 68999998
Q ss_pred eccc---cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 78 GFPS---RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 78 gsP~---y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
.... +.....+.+..|+.+.. -+||+++.++++
T Consensus 82 pGG~~~~~~~~~~~~l~~~l~~~~-------~~gk~i~aiC~G 117 (190)
T 2vrn_A 82 PGGTVNPDKLRLEEGAMKFVRDMY-------DAGKPIAAICHG 117 (190)
T ss_dssp CCCTHHHHHHTTCHHHHHHHHHHH-------HTTCCEEEC-CT
T ss_pred CCCchhHHHHhhCHHHHHHHHHHH-------HcCCEEEEECHh
Confidence 6532 11122455666776653 256776666543
No 160
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=67.93 E-value=6.4 Score=31.77 Aligned_cols=40 Identities=8% Similarity=0.171 Sum_probs=29.2
Q ss_pred CceEEEEEec--C--------CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYS--L--------YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S--~--------~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||||++|..+ + .|..+..+..+++.+.+ .|.+|.++....
T Consensus 20 mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~~ 69 (438)
T 3c48_A 20 HMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAK-QGIEVDIYTRAT 69 (438)
T ss_dssp CCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred hheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHh-cCCEEEEEecCC
Confidence 3499998842 2 35677788888899988 899999887653
No 161
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=67.88 E-value=7.2 Score=28.45 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=21.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
||+||+|+-+.. +++.. .+.+.+++ .|.++.++.
T Consensus 1 m~~~i~il~~~~-~~~~~---~~~~~l~~-~g~~~~~~~ 34 (213)
T 3d54_D 1 MKPRACVVVYPG-SNCDR---DAYHALEI-NGFEPSYVG 34 (213)
T ss_dssp CCCEEEEECCTT-EEEHH---HHHHHHHT-TTCEEEEEC
T ss_pred CCcEEEEEEcCC-CCccH---HHHHHHHH-CCCEEEEEe
Confidence 788998886432 33211 24666777 788777754
No 162
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=66.03 E-value=7.7 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=30.7
Q ss_pred ceEEEEEec-------------C-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYS-------------L-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S-------------~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|||++|..+ + .|-.+..+..+++.+.+ .|++|.++...
T Consensus 8 MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~-~G~~V~v~~~~ 59 (499)
T 2r60_A 8 KHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAE-MGVQVDIITRR 59 (499)
T ss_dssp CEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred ceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHh-cCCeEEEEeCC
Confidence 589998753 1 47788899999999998 89999998764
No 163
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=65.77 E-value=8.8 Score=30.05 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=27.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|||+++.. ..|.....+..+++.+.+ .|.+|.++...+
T Consensus 7 mkIl~~~~-~~gG~~~~~~~la~~L~~-~G~~V~v~~~~~ 44 (364)
T 1f0k_A 7 KRLMVMAG-GTGGHVFPGLAVAHHLMA-QGWQVRWLGTAD 44 (364)
T ss_dssp CEEEEECC-SSHHHHHHHHHHHHHHHT-TTCEEEEEECTT
T ss_pred cEEEEEeC-CCccchhHHHHHHHHHHH-cCCEEEEEecCC
Confidence 58888853 344445566688888888 899999887654
No 164
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=65.73 E-value=46 Score=25.99 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=43.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCc--eEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChh-hhccCCeeEEe
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGV--EATLWQVPETLSSVILQKMKAPPKTNDVPVIRPH-QLKEADGFLFG 78 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ad~ii~g 78 (202)
++||.|| ..|+ |...++..+.+ .|. +|..++...... ......... +.......+ .+.++|.||++
T Consensus 33 ~~kI~II---G~G~---mG~slA~~l~~-~G~~~~V~~~dr~~~~~-~~a~~~G~~---~~~~~~~~~~~~~~aDvVila 101 (314)
T 3ggo_A 33 MQNVLIV---GVGF---MGGSFAKSLRR-SGFKGKIYGYDINPESI-SKAVDLGII---DEGTTSIAKVEDFSPDFVMLS 101 (314)
T ss_dssp CSEEEEE---SCSH---HHHHHHHHHHH-TTCCSEEEEECSCHHHH-HHHHHTTSC---SEEESCTTGGGGGCCSEEEEC
T ss_pred CCEEEEE---eeCH---HHHHHHHHHHh-CCCCCEEEEEECCHHHH-HHHHHCCCc---chhcCCHHHHhhccCCEEEEe
Confidence 3577776 2554 66677777777 787 777766543100 011111000 000001223 47899999999
Q ss_pred ccccCCcchHHHHHHHHhhh
Q 028917 79 FPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 79 sP~y~g~~~~~~k~fld~~~ 98 (202)
.|.. .+...++.+.
T Consensus 102 vp~~------~~~~vl~~l~ 115 (314)
T 3ggo_A 102 SPVR------TFREIAKKLS 115 (314)
T ss_dssp SCGG------GHHHHHHHHH
T ss_pred CCHH------HHHHHHHHHh
Confidence 9975 2455555553
No 165
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=63.97 E-value=7.6 Score=29.33 Aligned_cols=61 Identities=7% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc--CChhhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV--IRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
+..+.+.+++ .|+++..+.+-+..|. ++... .....+.++|.|||.||. .++.|++.+
T Consensus 18 ~~~l~~~L~~-~G~~~~~~P~i~i~~~------------~~~~~l~~~l~~l~~~d~vifTS~~-------aV~~~~~~l 77 (254)
T 4es6_A 18 CAALAASLGE-AGVHSSSLPLLAIDPL------------EETPEQRTLMLDLDRYCAVVVVSKP-------AARLGLERL 77 (254)
T ss_dssp HHHHHHHHHH-TTCEEEECCSCEEEEC------------CCCHHHHHHHHTGGGCSEEEECSHH-------HHHHHHHHH
T ss_pred hHHHHHHHHH-CCCcEEEeCCEEEeeC------------cChHHHHHHHHhccCCCEEEEECHH-------HHHHHHHHH
Confidence 4556777777 7877655444332110 01000 113457899999999986 678888877
Q ss_pred hhh
Q 028917 98 YEL 100 (202)
Q Consensus 98 ~~~ 100 (202)
...
T Consensus 78 ~~~ 80 (254)
T 4es6_A 78 DRY 80 (254)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 166
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=63.65 E-value=42 Score=25.36 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=36.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCc--eEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhc-cCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGV--EATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLK-EADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~--~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ad~ii~ 77 (202)
|+ ||.|| ..|+ +...++..+.+ .|. +|.+++..... ............ ... ...+.+. ++|.||+
T Consensus 1 m~-~I~iI---G~G~---mG~~~a~~l~~-~g~~~~V~~~d~~~~~-~~~~~~~g~~~~--~~~-~~~~~~~~~aDvVil 68 (281)
T 2g5c_A 1 MQ-NVLIV---GVGF---MGGSFAKSLRR-SGFKGKIYGYDINPES-ISKAVDLGIIDE--GTT-SIAKVEDFSPDFVML 68 (281)
T ss_dssp CC-EEEEE---SCSH---HHHHHHHHHHH-TTCCSEEEEECSCHHH-HHHHHHTTSCSE--EES-CGGGGGGTCCSEEEE
T ss_pred Cc-EEEEE---ecCH---HHHHHHHHHHh-cCCCcEEEEEeCCHHH-HHHHHHCCCccc--ccC-CHHHHhcCCCCEEEE
Confidence 44 78776 3454 55566666666 676 66666543210 011111111000 000 1224567 8999999
Q ss_pred ecccc
Q 028917 78 GFPSR 82 (202)
Q Consensus 78 gsP~y 82 (202)
..|..
T Consensus 69 avp~~ 73 (281)
T 2g5c_A 69 SSPVR 73 (281)
T ss_dssp CSCHH
T ss_pred cCCHH
Confidence 99986
No 167
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=63.45 E-value=29 Score=24.02 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=22.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||+|+-+- |....=+-...+.++. .|.+++++....
T Consensus 3 ~ki~il~~~--g~~~~e~~~~~~~l~~-ag~~v~~vs~~~ 39 (168)
T 3l18_A 3 MKVLFLSAD--GFEDLELIYPLHRIKE-EGHEVYVASFQR 39 (168)
T ss_dssp CEEEEECCT--TBCHHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred cEEEEEeCC--CccHHHHHHHHHHHHH-CCCEEEEEECCC
Confidence 478777643 4333333345566666 788998887643
No 168
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=63.15 E-value=9.1 Score=29.28 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=36.9
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc--CChhhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV--IRPHQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
+..+.+.+++ .|+++..+.+-+..|. ++.+. .....+.++|.|||.||. .++.|++.+
T Consensus 26 a~~l~~~L~~-~G~~~~~~P~i~i~~~------------~~~~~l~~~l~~l~~~d~vifTS~n-------aV~~~~~~l 85 (269)
T 3re1_A 26 SAALARVLAD-AGIFSSSLPLLETEPL------------PLTPAQRSIIFELLNYSAVIVVSKP-------AARLAIELI 85 (269)
T ss_dssp HHHHHHHHHT-TTCEEEECCCCEEEEC------------CCHHHHHHHHHTGGGSSEEEECSHH-------HHHHHHHHH
T ss_pred HHHHHHHHHH-CCCCEEEcCCEEEecC------------CCcHHHHHHHHhccCCCEEEEECHH-------HHHHHHHHH
Confidence 5567777877 7877665444332110 00000 113457899999999986 578888777
Q ss_pred hhh
Q 028917 98 YEL 100 (202)
Q Consensus 98 ~~~ 100 (202)
...
T Consensus 86 ~~~ 88 (269)
T 3re1_A 86 DEV 88 (269)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 169
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=63.13 E-value=4.4 Score=31.06 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=32.7
Q ss_pred HHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 20 AREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 20 a~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
|..+.+.|+. .|.+|+.+..++.. ..+| ...+++.++|.||+.-.-
T Consensus 35 ~~~~~~aL~~-~~~~V~~i~~~~~~--------------~~fP-~~~~~L~~yDvIIl~d~~ 80 (248)
T 3soz_A 35 ADYLLSCLRQ-GNIDVDYMPAHIVQ--------------TRFP-QTAEALACYDAIVISDIG 80 (248)
T ss_dssp SHHHHHHHTT-TTCEEEEEETTHHH--------------HSCC-CSHHHHHTCSEEEEESCC
T ss_pred HHHHHHHHhc-CCceeEEeCchhhh--------------hhCC-CChHHHhcCCEEEEcCCC
Confidence 4567778887 89999988875421 1234 246889999999999443
No 170
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=62.94 E-value=15 Score=23.79 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=24.7
Q ss_pred CCceEEEEEec-CCC-hHHHHHHHHHHHhhccC-Cc-eEEEEEccC
Q 028917 1 MATKIYIVYYS-LYG-HVETMAREVQRGANSVL-GV-EATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S-~~G-~T~~la~~i~~~~~~~~-g~-~v~~~~l~~ 42 (202)
|+ |++|+..| |++ .....+-.++..+.+ . |. ++.++-..+
T Consensus 1 M~-k~~ii~~~~p~~~~~~~~al~~a~~~~~-~~g~~~v~vff~~d 44 (117)
T 1jx7_A 1 MQ-KIVIVANGAPYGSESLFNSLRLAIALRE-QESNLDLRLFLMSD 44 (117)
T ss_dssp CC-EEEEEECCCTTTCSHHHHHHHHHHHHHH-HCTTCEEEEEECGG
T ss_pred Cc-EEEEEEcCCCCCcHHHHHHHHHHHHHHh-cCCCccEEEEEEch
Confidence 54 77766655 454 343444555555555 5 77 888887765
No 171
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=62.86 E-value=9.2 Score=30.59 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=31.0
Q ss_pred ceEEEEEec----CCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYS----LYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S----~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|||++|..+ ..|..+..+..+++.+.+ .|++|+++...
T Consensus 3 MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~-~G~~V~v~~~~ 44 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLAEALTAISEALAS-LGHEVLVFTPS 44 (439)
T ss_dssp CEEEEECSCCTTSCSSSHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred eEEEEEecccCCcccCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 589998854 257788889999999998 89999988743
No 172
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=62.64 E-value=11 Score=26.73 Aligned_cols=39 Identities=18% Similarity=0.034 Sum_probs=21.8
Q ss_pred CCceEEEEEecC--------CChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSL--------YGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~--------~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|++|+.||..|. +.|...+++.+...+++ .|+++..+.+
T Consensus 4 m~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~-~G~~v~~~~i 50 (167)
T 2g2c_A 4 MHIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQD-YSYELISEVV 50 (167)
T ss_dssp CEEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC-----CEEEEEEEEE
T ss_pred CccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHH-CCCEEeEEEE
Confidence 667888887552 34666666664444666 7877755444
No 173
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=62.37 E-value=43 Score=24.46 Aligned_cols=89 Identities=13% Similarity=0.078 Sum_probs=42.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCC-ceEEEEEccCCCcHHHHhhcCCCCCCCCCCc--CChhhhccCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLG-VEATLWQVPETLSSVILQKMKAPPKTNDVPV--IRPHQLKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ad~ii~ 77 (202)
||||.++| +|-|..+...+++.|.+ .| .+|.++.-.......... .....-.-|+.+ .....+...|.||.
T Consensus 21 ~~mk~vlV----tGatG~iG~~l~~~L~~-~G~~~V~~~~R~~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~D~vv~ 94 (236)
T 3qvo_A 21 GHMKNVLI----LGAGGQIARHVINQLAD-KQTIKQTLFARQPAKIHKPYP-TNSQIIMGDVLNHAALKQAMQGQDIVYA 94 (236)
T ss_dssp -CCEEEEE----ETTTSHHHHHHHHHHTT-CTTEEEEEEESSGGGSCSSCC-TTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CcccEEEE----EeCCcHHHHHHHHHHHh-CCCceEEEEEcChhhhccccc-CCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence 44454444 35555677888888887 78 777776643210000000 000000012211 12344678899987
Q ss_pred eccccCCcchHHHHHHHHhh
Q 028917 78 GFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~ 97 (202)
..+.. ...-..+.+++.+
T Consensus 95 ~a~~~--~~~~~~~~~~~~~ 112 (236)
T 3qvo_A 95 NLTGE--DLDIQANSVIAAM 112 (236)
T ss_dssp ECCST--THHHHHHHHHHHH
T ss_pred cCCCC--chhHHHHHHHHHH
Confidence 65432 1223355666655
No 174
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=62.07 E-value=2.4 Score=31.91 Aligned_cols=26 Identities=19% Similarity=-0.009 Sum_probs=20.6
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
...+.++|.|||.||. .++.|++.+.
T Consensus 45 ~~~l~~~d~viftS~~-------aV~~~~~~l~ 70 (240)
T 3mw8_A 45 LDELSRADILIFISTS-------AVSFATPWLK 70 (240)
T ss_dssp HHHHTTCSEEEECSHH-------HHHHHHHHHT
T ss_pred HHHhcCCCEEEEECHH-------HHHHHHHHHH
Confidence 3467889999999986 6788888763
No 175
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=60.82 E-value=15 Score=27.99 Aligned_cols=39 Identities=10% Similarity=-0.021 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHh-hccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGA-NSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~-~~~~g~~v~~~~l~~ 42 (202)
|++||.|+-+ .|.+..=+-...+.+ .. .|.+++++....
T Consensus 22 m~~~I~ill~--~gf~~~e~~~p~dvl~~~-~~~~v~~vs~~~ 61 (253)
T 3ewn_A 22 GDEQIAMLVY--PGMTVMDLVGPHCMFGSL-MGAKIYIVAKSL 61 (253)
T ss_dssp CCCEEEEECC--TTBCHHHHHHHHHHHTTS-TTCEEEEEESSS
T ss_pred CCeEEEEEeC--CCCcHHHHHHHHHHHHhC-CCCEEEEEeCCC
Confidence 6678888764 354443334455666 34 688998887654
No 176
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=60.49 E-value=16 Score=28.81 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=29.2
Q ss_pred CceEEEEEecCCCh---HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGH---VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||+|+++....- +-.-+..+.+.+++ .|.++..+++..
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINK-EKYEPLYIGITK 45 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhh-cCCEEEEEEEcC
Confidence 45799999765432 22356778889998 899999988754
No 177
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=59.95 E-value=9.1 Score=29.95 Aligned_cols=37 Identities=8% Similarity=0.204 Sum_probs=30.2
Q ss_pred eEEEEEec--CCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYS--LYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S--~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+++..+ +.|..+..+..+++.+.+ .|.+|.++...
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~-~G~~V~v~~~~ 40 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAA-RGHHVRVYTQS 40 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHH-TTCCEEEEESE
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHh-CCCeEEEEecC
Confidence 89888644 467788888899999998 89999998765
No 178
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=59.22 E-value=22 Score=25.62 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=18.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCC-----ceEEEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLG-----VEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g-----~~v~~~~ 39 (202)
||+||- -..||...+++.+ ++ .| +++++++
T Consensus 2 ~I~iid-~~~g~~~s~~~~l----~~-~G~~~~~~~~~~~~ 36 (201)
T 1gpw_B 2 RIGIIS-VGPGNIMNLYRGV----KR-ASENFEDVSIELVE 36 (201)
T ss_dssp EEEEEC-CSSSCCHHHHHHH----HH-HSTTBSSCEEEEEC
T ss_pred EEEEEe-cCCchHHHHHHHH----HH-cCCCCCceEEEEEC
Confidence 788884 3356776666544 34 45 6777644
No 179
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=59.19 E-value=9.3 Score=30.01 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=27.1
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEE
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
|+||+||+--..+.....++.+.+.+++ .|+++.+.
T Consensus 4 m~ki~iI~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~ 39 (307)
T 1u0t_A 4 HRSVLLVVHTGRDEATETARRVEKVLGD-NKIALRVL 39 (307)
T ss_dssp -CEEEEEESSSGGGGSHHHHHHHHHHHT-TTCEEEEE
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 4688888754456667788999999998 89887654
No 180
>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*
Probab=58.97 E-value=46 Score=26.30 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=54.5
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
.+..+++|.+|+=+|- .+.-+...|+|++.+. .| ++++.+-... ...+..+.+.+......+..
T Consensus 136 ~EAvk~AEi~IlftPf-G~~t~~Iakkii~~lp--------Eg---AII~nTCTip---p~~ly~~le~l~R~DvgIsS- 199 (358)
T 2b0j_A 136 REAVEGADIVITWLPK-GNKQPDIIKKFADAIP--------EG---AIVTHACTIP---TTKFAKIFKDLGREDLNITS- 199 (358)
T ss_dssp HHHHTTCSEEEECCTT-CTTHHHHHHHHGGGSC--------TT---CEEEECSSSC---HHHHHHHHHHTTCTTSEEEE-
T ss_pred HHHhcCCCEEEEecCC-CCCcHHHHHHHHhhCc--------CC---CEEecccCCC---HHHHHHHHHHhCcccCCeec-
Confidence 5667999999999996 4446778899999873 23 3444433211 12233333333222233332
Q ss_pred CCcCCCCccccccccCcccccceeecCCCCCCCCHHHHHHHHHHhHHHH
Q 028917 146 GYTFGSGMFEMNEVKGGSSYGAGTFAADGSRQPTDLELQQAFHQGKYVA 194 (202)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~e~~~~~a~~~g~~l~ 194 (202)
+. ++...|.....-.+..--+|++++++.++++...
T Consensus 200 -~H------------PaaVPgt~Gq~~~g~~yAtEEqIeklveLaksa~ 235 (358)
T 2b0j_A 200 -YH------------PGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIAR 235 (358)
T ss_dssp -CB------------CSSCTTTCCCEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred -cC------------CCCCCCCCCccccccccCCHHHHHHHHHHHHHhC
Confidence 21 1111111001112335678999999999998754
No 181
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=58.93 E-value=81 Score=26.51 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=59.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHh-hcC-CCCC-CCCCCcCChhhhccCCeeEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQ-KMK-APPK-TNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~-~~~-~~~~-~~~~~~~~~~~l~~ad~ii~ 77 (202)
|..+|.|| ..|+ |...++..+.+ .|.+|.+++.....-..... ... .... ..+.. .....+..+|.||+
T Consensus 9 ~~~~IgvI---GlG~---MG~~lA~~La~-~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~-e~v~~l~~aDvVil 80 (497)
T 2p4q_A 9 MSADFGLI---GLAV---MGQNLILNAAD-HGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIE-DFISKLKRPRKVML 80 (497)
T ss_dssp CCCSEEEE---CCSH---HHHHHHHHHHH-TTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHH-HHHHTSCSSCEEEE
T ss_pred CCCCEEEE---eeHH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHH-HHHhcCCCCCEEEE
Confidence 56667766 2343 55566667766 78888888764321111111 000 0000 00100 01122234999999
Q ss_pred eccccCCcchHHHHHHHHhhhhhhhhccCC-CCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 78 GFPSRFGVMAAQCKAFFDATYELWASQALA-GKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~~~~~~~~l~-gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
..|.. ..++..++.+.. .++ |+. ++ ..+. +.. .....+...+...|..+++.
T Consensus 81 ~Vp~~-----~~v~~vl~~l~~-----~l~~g~i--II-d~s~--~~~-~~~~~l~~~l~~~g~~~v~~ 133 (497)
T 2p4q_A 81 LVKAG-----APVDALINQIVP-----LLEKGDI--II-DGGN--SHF-PDSNRRYEELKKKGILFVGS 133 (497)
T ss_dssp CCCSS-----HHHHHHHHHHGG-----GCCTTCE--EE-ECSC--CCH-HHHHHHHHHHHHTTCEEEEE
T ss_pred EcCCh-----HHHHHHHHHHHH-----hCCCCCE--EE-ECCC--CCh-hHHHHHHHHHHHcCCceeCC
Confidence 99973 246777776642 333 442 22 2221 222 22344555666677776653
No 182
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=58.65 E-value=62 Score=25.13 Aligned_cols=82 Identities=17% Similarity=0.054 Sum_probs=41.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcC----CCCC--CCCCC-cCChhhhccCCe
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMK----APPK--TNDVP-VIRPHQLKEADG 74 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~----~~~~--~~~~~-~~~~~~l~~ad~ 74 (202)
++||.|| | .|+ +...++..+.+ .|.+|.++ .... ..+.+.... .+.. ...+. ....+.+.++|.
T Consensus 19 ~~kI~Ii-G--aGa---~G~~~a~~L~~-~G~~V~l~-~~~~-~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 89 (318)
T 3hwr_A 19 GMKVAIM-G--AGA---VGCYYGGMLAR-AGHEVILI-ARPQ-HVQAIEATGLRLETQSFDEQVKVSASSDPSAVQGADL 89 (318)
T ss_dssp -CEEEEE-S--CSH---HHHHHHHHHHH-TTCEEEEE-CCHH-HHHHHHHHCEEEECSSCEEEECCEEESCGGGGTTCSE
T ss_pred CCcEEEE-C--cCH---HHHHHHHHHHH-CCCeEEEE-EcHh-HHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHcCCCCE
Confidence 3478776 3 343 44455666666 68888887 4321 111111110 0000 00000 012345678999
Q ss_pred eEEeccccCCcchHHHHHHHHhhh
Q 028917 75 FLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 75 ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
||+++|.+. +...++.+.
T Consensus 90 vilavk~~~------~~~~l~~l~ 107 (318)
T 3hwr_A 90 VLFCVKSTD------TQSAALAMK 107 (318)
T ss_dssp EEECCCGGG------HHHHHHHHT
T ss_pred EEEEccccc------HHHHHHHHH
Confidence 999999982 455666663
No 183
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=58.34 E-value=24 Score=24.79 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=39.4
Q ss_pred CCceEEEEE-ecC----CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhcc--CC
Q 028917 1 MATKIYIVY-YSL----YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKE--AD 73 (202)
Q Consensus 1 M~~kiliiy-~S~----~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--ad 73 (202)
|.||++|+- +.. .|---.+++.+.+.+ . .++++|... .+. .....+.+ +|
T Consensus 1 M~m~ilVlGiGN~L~gDDG~G~~v~~~L~~~~---p--~v~vid~Gt-~~~-----------------~l~~~l~~~~~d 57 (157)
T 3pu6_A 1 MSLKKVLLCVGNELRGDDGVAIALGRLVEEQM---P--EWSVFFGYD-TPE-----------------SEFGKLRELAPD 57 (157)
T ss_dssp --CCEEEEEECCTTBGGGGHHHHHHHHHHHHC---T--TEEEEEEET-CGG-----------------GGHHHHHHHCCS
T ss_pred CCCCEEEEEECCcccccccHHHHHHHHHHhhC---C--CeEEEECCC-CHH-----------------HHHHHHHhcCCC
Confidence 777888776 333 355677888887433 2 478888754 121 23455665 99
Q ss_pred eeEEeccccCCcchHHHH
Q 028917 74 GFLFGFPSRFGVMAAQCK 91 (202)
Q Consensus 74 ~ii~gsP~y~g~~~~~~k 91 (202)
.+||.=-+ .+..|+.++
T Consensus 58 ~lIiVDA~-~g~~PGti~ 74 (157)
T 3pu6_A 58 VIVVADAM-SGFKEGEIE 74 (157)
T ss_dssp EEEEEEEE-EC----CEE
T ss_pred EEEEEEec-CCCCCcEEE
Confidence 99998877 777777654
No 184
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=58.25 E-value=77 Score=26.61 Aligned_cols=120 Identities=15% Similarity=0.186 Sum_probs=61.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhc--CCCCC-CCCCCcCChhhhccCCeeEEec
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKM--KAPPK-TNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~l~~ad~ii~gs 79 (202)
++|.|| ..|+ |...++..+.+ .|.+|.+++.....-....+.. ..... ..+.. ...+.+.++|.||+..
T Consensus 5 ~kIgiI---GlG~---MG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~-e~v~~l~~aDvVil~V 76 (484)
T 4gwg_A 5 ADIALI---GLAV---MGQNLILNMND-HGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLK-EMVSKLKKPRRIILLV 76 (484)
T ss_dssp BSEEEE---CCSH---HHHHHHHHHHH-TTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHH-HHHHTBCSSCEEEECS
T ss_pred CEEEEE---ChhH---HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHH-HHHhhccCCCEEEEec
Confidence 367776 3443 55667777777 7888988876542111111110 00000 01111 1122334699999999
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
|.- ..++..++.+.. .+ .|+ ++...++ +... ....+...+...|..+++.+
T Consensus 77 p~~-----~~v~~vl~~l~~-----~L~~g~---iIId~st--~~~~-~t~~~~~~l~~~Gi~fvd~p 128 (484)
T 4gwg_A 77 KAG-----QAVDDFIEKLVP-----LLDTGD---IIIDGGN--SEYR-DTTRRCRDLKAKGILFVGSG 128 (484)
T ss_dssp CSS-----HHHHHHHHHHGG-----GCCTTC---EEEECSC--CCHH-HHHHHHHHHHHTTCEEEEEE
T ss_pred CCh-----HHHHHHHHHHHH-----hcCCCC---EEEEcCC--CCch-HHHHHHHHHHhhccccccCC
Confidence 874 356677776642 33 333 2223222 1222 23345566777888877643
No 185
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=57.88 E-value=24 Score=26.65 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
+.+...+.+.+ .|..+.++..... . ...+.+.++|+|||.
T Consensus 29 ~~~~~~~~l~~-aG~~pv~lp~~~~------------------~-~~~~~l~~~DGlil~ 68 (254)
T 3fij_A 29 TQQRYVDAIQK-VGGFPIALPIDDP------------------S-TAVQAISLVDGLLLT 68 (254)
T ss_dssp -CHHHHHHHHH-HTCEEEEECCCCG------------------G-GHHHHHHTCSEEEEC
T ss_pred hhHHHHHHHHH-CCCEEEEEeCCCc------------------h-HHHHHHhhCCEEEEC
Confidence 44567777777 7877766554321 0 123446789999996
No 186
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=57.84 E-value=26 Score=20.76 Aligned_cols=38 Identities=8% Similarity=0.015 Sum_probs=27.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++.+++.+--+.++++...+.+.+++ .+.+++++++..
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~~~v~~ 40 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDP-SKYTVEIVHLGT 40 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCT-TTEEEEEEETTT
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHh-cCCeEEEEEecC
Confidence 34444443358999999888888887 788888888864
No 187
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=57.32 E-value=34 Score=24.36 Aligned_cols=86 Identities=12% Similarity=0.047 Sum_probs=43.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||+|. |-|-.+...+++.|.+ .|.+|..+.-...... ... .....-.-|+.+...+.+...|.||.......
T Consensus 2 kvlVt-----GatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 73 (221)
T 3ew7_A 2 KIGII-----GATGRAGSRILEEAKN-RGHEVTAIVRNAGKIT-QTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISP 73 (221)
T ss_dssp EEEEE-----TTTSHHHHHHHHHHHH-TTCEEEEEESCSHHHH-HHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred eEEEE-----cCCchhHHHHHHHHHh-CCCEEEEEEcCchhhh-hcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence 67663 4445566777777777 7888877664421000 000 00000001121111266788999998876643
Q ss_pred Ccch---HHHHHHHHhh
Q 028917 84 GVMA---AQCKAFFDAT 97 (202)
Q Consensus 84 g~~~---~~~k~fld~~ 97 (202)
.... ...+++++.+
T Consensus 74 ~~~~~~~~~~~~l~~a~ 90 (221)
T 3ew7_A 74 DEAEKHVTSLDHLISVL 90 (221)
T ss_dssp TTTTSHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHH
Confidence 3222 2335566555
No 188
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=57.14 E-value=27 Score=22.25 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=28.0
Q ss_pred ceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEE
Q 028917 3 TKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATL 37 (202)
Q Consensus 3 ~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~ 37 (202)
+|+.-|.+|. .||.+...+++++..++ .|..++.
T Consensus 75 KK~mSvsFsd~~~~~K~~i~ei~kkykd-~GykvE~ 109 (111)
T 2jmk_A 75 KKLMSVSFSDIDENMKKVIKATAEKFKN-KGFKVET 109 (111)
T ss_dssp TTEEEEEECSCCTTHHHHHHHHHHHGGG-GCCEEEE
T ss_pred CeEEEEEeehhhhhHHHHHHHHHHHhhc-CCceeec
Confidence 3566667787 69999999999999999 8987764
No 189
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=56.79 E-value=18 Score=28.57 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=46.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe-cccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG-FPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g-sP~y 82 (202)
+++||. +|.+-..+...++.+++ .|++++++++....|.+. . .+.+.+.+++.||+. -...
T Consensus 203 dv~iva---~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~d~-------------~-~i~~~~~~~~~vvvvEe~~~ 264 (324)
T 1w85_B 203 DITIIA---YGAMVHESLKAAAELEK-EGISAEVVDLRTVQPLDI-------------E-TIIGSVEKTGRAIVVQEAQR 264 (324)
T ss_dssp SEEEEE---CTTHHHHHHHHHHHHHH-TTCCEEEEECSEEESCCH-------------H-HHHHHHHHHSCEEEEEEEET
T ss_pred CEEEEE---ecHHHHHHHHHHHHHHh-cCCCEEEEEeeeecCCCH-------------H-HHHHHHhhCCcEEEEeCCCc
Confidence 345543 67777788888888888 899999999987433200 0 123445555555544 2333
Q ss_pred CCcchHHHHHHHHh
Q 028917 83 FGVMAAQCKAFFDA 96 (202)
Q Consensus 83 ~g~~~~~~k~fld~ 96 (202)
.|++-..+..++..
T Consensus 265 ~Gg~g~~v~~~l~~ 278 (324)
T 1w85_B 265 QAGIAANVVAEINE 278 (324)
T ss_dssp TSSSHHHHHHHHHH
T ss_pred CChHHHHHHHHHHh
Confidence 57777777776654
No 190
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=56.53 E-value=6.9 Score=31.38 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=27.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+|||+++..+..|+...+. .++++|.+ .|.+|.++.-
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 56 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLI-QLAWGFRT-AGHDVLIAVA 56 (398)
T ss_dssp CCEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEES
T ss_pred cCEEEEEcCCCcchHhHHH-HHHHHHHH-CCCEEEEecc
Confidence 4599988766567655543 56777888 8999998875
No 191
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=55.34 E-value=45 Score=26.02 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=41.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCC----ceEEEEEccCCC-cHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLG----VEATLWQVPETL-SSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g----~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
|||.|| ..|+ |...++..+.+ .| .+|.+++-.... ....+........ . ...+.+.++|.||+
T Consensus 23 mkI~iI---G~G~---mG~ala~~L~~-~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~-~----~~~e~~~~aDvVil 90 (322)
T 2izz_A 23 MSVGFI---GAGQ---LAFALAKGFTA-AGVLAAHKIMASSPDMDLATVSALRKMGVKLT-P----HNKETVQHSDVLFL 90 (322)
T ss_dssp CCEEEE---SCSH---HHHHHHHHHHH-TTSSCGGGEEEECSCTTSHHHHHHHHHTCEEE-S----CHHHHHHHCSEEEE
T ss_pred CEEEEE---CCCH---HHHHHHHHHHH-CCCCCcceEEEECCCccHHHHHHHHHcCCEEe-C----ChHHHhccCCEEEE
Confidence 367766 3455 56666666666 67 678777654310 1111111100000 0 12345678999999
Q ss_pred eccccCCcchHHHHHHHHhh
Q 028917 78 GFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~ 97 (202)
..|.+ .++..++.+
T Consensus 91 av~~~------~~~~vl~~l 104 (322)
T 2izz_A 91 AVKPH------IIPFILDEI 104 (322)
T ss_dssp CSCGG------GHHHHHHHH
T ss_pred EeCHH------HHHHHHHHH
Confidence 99954 456666655
No 192
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=55.18 E-value=17 Score=22.19 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=21.4
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||+++ ++|+++ .++++++... +++ .|++++.+++.+
T Consensus 4 ~m~~v-~ly~~~~C~~C~~~~~~----L~~-~~i~~~~~di~~ 40 (92)
T 2khp_A 4 SMVDV-IIYTRPGCPYCARAKAL----LAR-KGAEFNEIDASA 40 (92)
T ss_dssp CCCCE-EEEECTTCHHHHHHHHH----HHH-TTCCCEEEESTT
T ss_pred CcccE-EEEECCCChhHHHHHHH----HHH-cCCCcEEEECCC
Confidence 55444 456665 4667655443 334 567788888764
No 193
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=55.03 E-value=28 Score=25.50 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=57.5
Q ss_pred CceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc--CCCcHHHH---h-hcCCCCCCCCCCcCChhhhccCCe
Q 028917 2 ATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP--ETLSSVIL---Q-KMKAPPKTNDVPVIRPHQLKEADG 74 (202)
Q Consensus 2 ~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~--~~~~~~~~---~-~~~~~~~~~~~~~~~~~~l~~ad~ 74 (202)
|-++.++|+++ .|.|..|.+.+..... .|..|-++.-. +-+..+.. + ...+... ++.. ...+...++|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~-~~~~-d~~~~~~~~Dv 94 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPA-CLLR-DVAQEALGVAV 94 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEE-SSGG-GGHHHHHTCSE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEccccCccchhhhhhccCCcccceec-CCHH-HHHHhccCCCE
Confidence 44899999998 6999989999888766 46677777532 11111100 0 0001000 1111 12344567888
Q ss_pred eEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec
Q 028917 75 FLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST 117 (202)
Q Consensus 75 ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~ 117 (202)
|++==--++ +. .-.|+..+. -.||++.+.+--
T Consensus 95 IlIDEaQFf---k~-~ve~~~~L~-------~~gk~VI~~GL~ 126 (195)
T 1w4r_A 95 IGIDEGQFF---PD-IVEFCEAMA-------NAGKTVIVAALD 126 (195)
T ss_dssp EEESSGGGC---TT-HHHHHHHHH-------HTTCEEEEEEES
T ss_pred EEEEchhhh---HH-HHHHHHHHH-------HCCCeEEEEecc
Confidence 887765555 22 566676663 268887776553
No 194
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=54.93 E-value=13 Score=28.85 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++|.|+|.+...|.....+.+.+.+++ .|.++.......
T Consensus 141 k~vgvi~~~~~~~s~~~~~~~~~~~~~-~g~~~v~~~~~~ 179 (302)
T 3lkv_A 141 KSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATALK 179 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHH-cCCEEEEEecCC
Confidence 478899987777777888888888888 888776655544
No 195
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=54.24 E-value=28 Score=27.08 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=11.9
Q ss_pred ccCCeeEEeccccC
Q 028917 70 KEADGFLFGFPSRF 83 (202)
Q Consensus 70 ~~ad~ii~gsP~y~ 83 (202)
.+.|+|++++|...
T Consensus 62 ~~~D~V~i~tp~~~ 75 (323)
T 1xea_A 62 YGVDAVMIHAATDV 75 (323)
T ss_dssp GCCSEEEECSCGGG
T ss_pred cCCCEEEEECCchh
Confidence 68999999999653
No 196
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=54.09 E-value=16 Score=26.88 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=22.4
Q ss_pred EEEecCCC--hHHHHHHHHHHHhhccCCce
Q 028917 7 IVYYSLYG--HVETMAREVQRGANSVLGVE 34 (202)
Q Consensus 7 iiy~S~~G--~T~~la~~i~~~~~~~~g~~ 34 (202)
|+|++.-| ||+..++.+.+.+++ .|+.
T Consensus 25 i~YF~~~G~eNT~~tl~la~era~e-~~Ik 53 (206)
T 1t57_A 25 ICYFEEPGKENTERVLELVGERADQ-LGIR 53 (206)
T ss_dssp EEEESSCSGGGHHHHHHHHHHHHHH-HTCC
T ss_pred EEEecCCCcccHHHHHHHHHHHHHH-cCCC
Confidence 67887654 999999999999998 6764
No 197
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=53.67 E-value=12 Score=25.16 Aligned_cols=32 Identities=6% Similarity=-0.021 Sum_probs=21.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
++++|+ | .|. +...+++.+.+ .|.+|.+++..
T Consensus 7 ~~v~I~-G--~G~---iG~~la~~L~~-~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVI-G--SEA---AGVGLVRELTA-AGKKVLAVDKS 38 (141)
T ss_dssp CSEEEE-C--CSH---HHHHHHHHHHH-TTCCEEEEESC
T ss_pred CEEEEE-C--CCH---HHHHHHHHHHH-CCCeEEEEECC
Confidence 356665 3 254 56667777777 78899988864
No 198
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=53.22 E-value=16 Score=26.01 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=19.3
Q ss_pred CCceEEEEEecCCCh--HHHHHHHHHHHhhc
Q 028917 1 MATKIYIVYYSLYGH--VETMAREVQRGANS 29 (202)
Q Consensus 1 M~~kiliiy~S~~G~--T~~la~~i~~~~~~ 29 (202)
||+|||.|. +|| -..+|+.+.+.+..
T Consensus 21 mm~~VLFVC---tgN~cRSpmAEal~r~~~~ 48 (167)
T 2fek_A 21 MFNNILVVC---VGNICRSPTAERLLQRYHP 48 (167)
T ss_dssp CCCEEEEEE---SSSSSHHHHHHHHHHHHCT
T ss_pred ccCeEEEEc---CCcHHHHHHHHHHHHHhcC
Confidence 667888887 555 36799999888753
No 199
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=52.98 E-value=36 Score=23.36 Aligned_cols=55 Identities=13% Similarity=0.009 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHH
Q 028917 14 GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAF 93 (202)
Q Consensus 14 G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~f 93 (202)
-+++.+++.+.+.+.+..+.++.++|+... -.-+|.+||+|..-. ..+++.
T Consensus 17 ~~~~~l~~~i~~al~dkKa~DI~vlDv~~~-------------------------s~~~DyfVIatg~S~----rqv~Ai 67 (136)
T 3ups_A 17 FDPEMLLKLVTDSLDDDQALEIATIPLAGK-------------------------SSIADYMVIASGRSS----RQVTAM 67 (136)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEECTTT-------------------------CSSCSEEEEEECSSH----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEECCCC-------------------------CcccCEEEEEEcCCH----HHHHHH
Confidence 357889999999998856778999998752 124599999987643 345555
Q ss_pred HHhh
Q 028917 94 FDAT 97 (202)
Q Consensus 94 ld~~ 97 (202)
.|.+
T Consensus 68 ad~v 71 (136)
T 3ups_A 68 AQKL 71 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 200
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=52.83 E-value=25 Score=26.26 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=36.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| ..|+ +...++..+.+ .|.+|.+++..........+....... . ...+.+.++|.||+.+|..
T Consensus 4 m~i~ii---G~G~---mG~~~a~~l~~-~g~~v~~~~~~~~~~~~~~~~~g~~~~----~-~~~~~~~~~D~Vi~~v~~~ 71 (259)
T 2ahr_A 4 MKIGII---GVGK---MASAIIKGLKQ-TPHELIISGSSLERSKEIAEQLALPYA----M-SHQDLIDQVDLVILGIKPQ 71 (259)
T ss_dssp CEEEEE---CCSH---HHHHHHHHHTT-SSCEEEEECSSHHHHHHHHHHHTCCBC----S-SHHHHHHTCSEEEECSCGG
T ss_pred cEEEEE---CCCH---HHHHHHHHHHh-CCCeEEEECCCHHHHHHHHHHcCCEee----C-CHHHHHhcCCEEEEEeCcH
Confidence 478776 2454 55667777776 677776665432100111111011100 0 1224467899999999954
No 201
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=52.83 E-value=32 Score=20.08 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccC-CceEEEEEccC
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVL-GVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~-g~~v~~~~l~~ 42 (202)
|++-.+++|+++ -+.++++...+.+..++.. ++.+..+++.+
T Consensus 1 m~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 44 (85)
T 1fo5_A 1 MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME 44 (85)
T ss_dssp CCCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS
T ss_pred CCceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC
Confidence 654455556665 4666665555554444312 45555566544
No 202
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=52.78 E-value=57 Score=24.32 Aligned_cols=40 Identities=30% Similarity=0.386 Sum_probs=27.8
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|..+|.++..+. +.....+.+.+.+.+++ .|.++.+++..
T Consensus 1 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~ 41 (290)
T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQ-LGYEATIFDSQ 41 (290)
T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHH-TTCEEEEEECT
T ss_pred CceEEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEeCCC
Confidence 666777776443 34567788899999988 89888776653
No 203
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=52.76 E-value=11 Score=29.08 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=37.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCC-CcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDV-PVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ad~ii~gs 79 (202)
|+++|+|. |-|-.+...+++.|.+ .|.+|..++-..... . ...... .. -|+ ++...+.+...|.||...
T Consensus 1 M~~~vlVt-----GatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~-~-~~~~~~-~~-~Dl~~~~~~~~~~~~d~Vih~a 70 (311)
T 3m2p_A 1 MSLKIAVT-----GGTGFLGQYVVESIKN-DGNTPIILTRSIGNK-A-INDYEY-RV-SDYTLEDLINQLNDVDAVVHLA 70 (311)
T ss_dssp -CCEEEEE-----TTTSHHHHHHHHHHHH-TTCEEEEEESCCC-------CCEE-EE-CCCCHHHHHHHTTTCSEEEECC
T ss_pred CCCEEEEE-----CCCcHHHHHHHHHHHh-CCCEEEEEeCCCCcc-c-CCceEE-EE-ccccHHHHHHhhcCCCEEEEcc
Confidence 77787774 5455577777777777 788877766542110 0 100000 00 111 111234566889999776
Q ss_pred ccc
Q 028917 80 PSR 82 (202)
Q Consensus 80 P~y 82 (202)
...
T Consensus 71 ~~~ 73 (311)
T 3m2p_A 71 ATR 73 (311)
T ss_dssp CCC
T ss_pred ccC
Confidence 543
No 204
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=52.75 E-value=31 Score=21.31 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=20.4
Q ss_pred eEEEEEecC-CChHH-----HHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVE-----TMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~-----~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|.| |+++ .+.++ +-|+.+. ++ .|++.+.+|+..
T Consensus 3 ~v~l-y~~~~C~~c~~~~~~~~ak~~L---~~-~~i~~~~~di~~ 42 (93)
T 1t1v_A 3 GLRV-YSTSVTGSREIKSQQSEVTRIL---DG-KRIQYQLVDISQ 42 (93)
T ss_dssp CEEE-EECSSCSCHHHHHHHHHHHHHH---HH-TTCCCEEEETTS
T ss_pred CEEE-EEcCCCCCchhhHHHHHHHHHH---HH-CCCceEEEECCC
Confidence 5555 5554 56663 3444444 44 678888888864
No 205
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=52.51 E-value=39 Score=23.02 Aligned_cols=53 Identities=8% Similarity=0.095 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHH
Q 028917 16 VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFD 95 (202)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld 95 (202)
+..+++.+++.+.+..+.++.++|+.+. ..-+|.+||+|..-.- .+++..|
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~-------------------------s~~~DyfVIaTg~S~r----qv~Aiad 53 (130)
T 2id1_A 3 IQEISKLAIEALEDIKGKDIIELDTSKL-------------------------TSLFQRMIVATGDSNR----QVKALAN 53 (130)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEGGGT-------------------------CSSCSEEEEEECSSHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC-------------------------CcccCEEEEEEcCCHH----HHHHHHH
Confidence 5678999999998856778999998751 1356899999876544 4444444
Q ss_pred hh
Q 028917 96 AT 97 (202)
Q Consensus 96 ~~ 97 (202)
.+
T Consensus 54 ~v 55 (130)
T 2id1_A 54 SV 55 (130)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 206
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=52.26 E-value=78 Score=24.32 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=56.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||.|| ..|+ +...++..+.+ .|.+|.+++..........+ ...... . ...+.+.++|.||+.+|.
T Consensus 31 ~~I~iI---G~G~---mG~~~a~~l~~-~g~~V~~~~~~~~~~~~~~~-~g~~~~----~-~~~~~~~~~DvVi~av~~- 96 (316)
T 2uyy_A 31 KKIGFL---GLGL---MGSGIVSNLLK-MGHTVTVWNRTAEKCDLFIQ-EGARLG----R-TPAEVVSTCDITFACVSD- 96 (316)
T ss_dssp SCEEEE---CCSH---HHHHHHHHHHH-TTCCEEEECSSGGGGHHHHH-TTCEEC----S-CHHHHHHHCSEEEECCSS-
T ss_pred CeEEEE---cccH---HHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHH-cCCEEc----C-CHHHHHhcCCEEEEeCCC-
Confidence 467666 2454 45556666666 68888877654321111111 100000 0 123446789999999995
Q ss_pred CCcchHHHHHHHHhhhhhhhhccC-CCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 83 FGVMAAQCKAFFDATYELWASQAL-AGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l-~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
+..++..+..+..+. ..+ .++. ++..+. +. ......+...+...|..+++.
T Consensus 97 ----~~~~~~v~~~~~~~~--~~l~~~~~--vv~~s~---~~-~~~~~~l~~~~~~~~~~~v~~ 148 (316)
T 2uyy_A 97 ----PKAAKDLVLGPSGVL--QGIRPGKC--YVDMST---VD-ADTVTELAQVIVSRGGRFLEA 148 (316)
T ss_dssp ----HHHHHHHHHSTTCGG--GGCCTTCE--EEECSC---CC-HHHHHHHHHHHHHTTCEEEEC
T ss_pred ----HHHHHHHHcCchhHh--hcCCCCCE--EEECCC---CC-HHHHHHHHHHHHHcCCEEEEc
Confidence 234566665431100 122 3442 222221 11 223455555665567777653
No 207
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=52.16 E-value=9.4 Score=29.72 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=25.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|.|||+|+.+. .+..+++.+++ .|+++.+++..+
T Consensus 1 m~m~Ililg~g-------~~~~l~~a~~~-~G~~v~~~~~~~ 34 (334)
T 2r85_A 1 MKVRIATYASH-------SALQILKGAKD-EGFETIAFGSSK 34 (334)
T ss_dssp CCSEEEEESST-------THHHHHHHHHH-TTCCEEEESCGG
T ss_pred CceEEEEECCh-------hHHHHHHHHHh-CCCEEEEEECCC
Confidence 76789998754 45567777777 798888877654
No 208
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=52.09 E-value=73 Score=23.98 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=12.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANS 29 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~ 29 (202)
|+||.|+= . |+ |.+.+.+.+.+
T Consensus 3 MmkI~ViG-a--Gr---MG~~i~~~l~~ 24 (243)
T 3qy9_A 3 SMKILLIG-Y--GA---MNQRVARLAEE 24 (243)
T ss_dssp CCEEEEEC-C--SH---HHHHHHHHHHH
T ss_pred ceEEEEEC-c--CH---HHHHHHHHHHh
Confidence 45877753 2 54 55566666655
No 209
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=52.03 E-value=17 Score=29.72 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=30.6
Q ss_pred eEEEEEec--C---CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYS--L---YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S--~---~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||++|..+ | .|..+..+..+++++.+ .|.+|+++...
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~-~G~~V~vi~~~ 43 (485)
T 1rzu_A 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEA-HGVRTRTLIPG 43 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHT-TTCEEEEEEEC
T ss_pred eEEEEeeeeccccccccHHHHHHHHHHHHHH-cCCeEEEEecc
Confidence 89988643 3 47889999999999998 89999998764
No 210
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=51.79 E-value=17 Score=29.79 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=31.0
Q ss_pred ceEEEEEec--C---CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYS--L---YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S--~---~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|||++|..+ | .|-.+..+..+++++.+ .|++|.++...
T Consensus 1 MkIl~v~~~~~P~~~~GG~~~~~~~la~~L~~-~G~~V~vi~~~ 43 (485)
T 2qzs_A 1 MQVLHVCSEMFPLLKTGGLADVIGALPAAQIA-DGVDARVLLPA 43 (485)
T ss_dssp CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred CeEEEEeeeccccccCCcHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 389988753 3 47889999999999998 89999998754
No 211
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=51.66 E-value=44 Score=21.33 Aligned_cols=101 Identities=12% Similarity=0.111 Sum_probs=56.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc--HHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS--SVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
||+|+. +-|...+.+.|.+..+. .|..| .++.+... .+.- ....-++...|++.|--
T Consensus 2 kilili---ntnndelikkikkeven-qgyqv--rdvndsdelkkemk---------------klaeeknfekiliisnd 60 (134)
T 2lci_A 2 KILILI---NTNNDELIKKIKKEVEN-QGYQV--RDVNDSDELKKEMK---------------KLAEEKNFEKILIISND 60 (134)
T ss_dssp CCEEEE---ECSCHHHHHHHHHHTTT-TTCEE--EEECSHHHHHHHHH---------------HHHHCCSCCCEEEEESC
T ss_pred eEEEEE---cCCcHHHHHHHHHHHHc-cCeee--eecCchHHHHHHHH---------------HHHhhcCcceEEEEcCc
Confidence 788776 34557788999999988 78655 45555211 1100 01122345555555432
Q ss_pred cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEE
Q 028917 82 RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLF 142 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~v 142 (202)
--.+|..++.++ .+--|++.+.-. ..+..+.++.......|+.|
T Consensus 61 -----kqllkemlelis------klgykvflllqd------qdeneleefkrkiesqgyev 104 (134)
T 2lci_A 61 -----KQLLKEMLELIS------KLGYKVFLLLQD------QDENELEEFKRKIESQGYEV 104 (134)
T ss_dssp -----HHHHHHHHHHHH------HHTCCEEEEEEC------SCHHHHHHHHHHHHTTTCEE
T ss_pred -----HHHHHHHHHHHH------HhCceeEEEeec------CchhHHHHHHHHHHhCCeee
Confidence 245677776664 344454444321 12455778877777666554
No 212
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=50.90 E-value=68 Score=23.23 Aligned_cols=68 Identities=18% Similarity=0.114 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCC-CCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKA-PPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+|-|..+...+++.|.+ .|.+|..+.-....... +....+ ..-.-|+.+...+.+...|.||......
T Consensus 27 tGatG~iG~~l~~~L~~-~G~~V~~~~R~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 27 VGANGKVARYLLSELKN-KGHEPVAMVRNEEQGPE-LRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp ETTTSHHHHHHHHHHHH-TTCEEEEEESSGGGHHH-HHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred ECCCChHHHHHHHHHHh-CCCeEEEEECChHHHHH-HHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 35555577777777777 78888877654321111 111111 0000122223566778999999887654
No 213
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=50.79 E-value=25 Score=23.50 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=25.5
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||.+.......+.+.+..+++| +|+..++....+
T Consensus 9 ~i~~~~~~~~~~~l~~vl~GIEE-EGip~~v~~~~~ 43 (117)
T 1nbw_B 9 RLFYDPRGHHAGAINELCWGLEE-QGVPCQTITYDG 43 (117)
T ss_dssp EEEECTTSCCHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred EEEeCCCCCCHHHHHHHHhhhhh-cCCCeEEEEeCC
Confidence 34555555445677999999999 999888866543
No 214
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=50.79 E-value=79 Score=24.67 Aligned_cols=81 Identities=15% Similarity=0.045 Sum_probs=43.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCC-C-----CCCC-cCChhhhccCCee
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPK-T-----NDVP-VIRPHQLKEADGF 75 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~-~-----~~~~-~~~~~~l~~ad~i 75 (202)
|||.|| | .|+ +...++..+.+ .|.+|.+++-.+ ..+.+........ + ..+. ....+.+.++|.|
T Consensus 4 mkI~Ii-G--aG~---~G~~~a~~L~~-~g~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~V 74 (335)
T 3ghy_A 4 TRICIV-G--AGA---VGGYLGARLAL-AGEAINVLARGA--TLQALQTAGLRLTEDGATHTLPVRATHDAAALGEQDVV 74 (335)
T ss_dssp CCEEEE-S--CCH---HHHHHHHHHHH-TTCCEEEECCHH--HHHHHHHTCEEEEETTEEEEECCEEESCHHHHCCCSEE
T ss_pred CEEEEE-C--cCH---HHHHHHHHHHH-CCCEEEEEEChH--HHHHHHHCCCEEecCCCeEEEeeeEECCHHHcCCCCEE
Confidence 488887 3 343 44455666666 688888877531 1111111100000 0 0000 0124457889999
Q ss_pred EEeccccCCcchHHHHHHHHhhh
Q 028917 76 LFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 76 i~gsP~y~g~~~~~~k~fld~~~ 98 (202)
|+++|.+ .++..++.+.
T Consensus 75 ilavk~~------~~~~~~~~l~ 91 (335)
T 3ghy_A 75 IVAVKAP------ALESVAAGIA 91 (335)
T ss_dssp EECCCHH------HHHHHHGGGS
T ss_pred EEeCCch------hHHHHHHHHH
Confidence 9999986 4667777663
No 215
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=50.56 E-value=28 Score=27.77 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=28.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLS 45 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~ 45 (202)
+++||. +|.+...+...++.+++ .|+++.++++....|
T Consensus 218 dv~iia---~Gs~~~~a~~Aa~~L~~-~Gi~v~vv~~~~l~P 255 (341)
T 2ozl_B 218 HITVVS---HSRPVGHCLEAAAVLSK-EGVECEVINMRTIRP 255 (341)
T ss_dssp SEEEEE---CSTHHHHHHHHHHHHHT-TTCCEEEEECCEEET
T ss_pred CEEEEE---eCHHHHHHHHHHHHHHh-cCCCeEEEeeeeecC
Confidence 345543 67777788888888888 899999999986433
No 216
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=50.45 E-value=30 Score=27.78 Aligned_cols=40 Identities=5% Similarity=0.131 Sum_probs=29.3
Q ss_pred CceEEEEEecCCCh---HHHHHHHHHHHh-hccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGH---VETMAREVQRGA-NSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~---T~~la~~i~~~~-~~~~g~~v~~~~l~~ 42 (202)
++||+|+++....- +-.-+..+.+.+ ++ .|.++..+++..
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~-~g~~v~~i~~~~ 46 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEAT-GKYEIIVFAIAQ 46 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHH-SSEEEEEEEECT
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcc-cCcEEEEEEEcC
Confidence 35899999765442 223467788888 87 899999998864
No 217
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=50.37 E-value=31 Score=24.78 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=46.3
Q ss_pred CCceEEEEEecC-----------CCh--HHHHHHHHHHHhh--ccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCC
Q 028917 1 MATKIYIVYYSL-----------YGH--VETMAREVQRGAN--SVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIR 65 (202)
Q Consensus 1 M~~kiliiy~S~-----------~G~--T~~la~~i~~~~~--~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (202)
|| ||+|+++=. ||+ -+.+-+.+.+.+. + .|++++++.-+. ..+.+. .+
T Consensus 9 ~M-~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~~-~g~~l~~~QSN~--EGeLId-------------~I 71 (176)
T 2c4w_A 9 HM-KILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGN-LDVELEFFQTNF--EGEIID-------------KI 71 (176)
T ss_dssp CE-EEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTT-CCEEEEEEECSC--HHHHHH-------------HH
T ss_pred cc-EEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhcccc-CCCEEEEEeeCc--HHHHHH-------------HH
Confidence 44 899998741 453 3567777777777 6 788888877543 111110 12
Q ss_pred hhhhcc-CCeeEEeccccCCcchHHHHHHHHhh
Q 028917 66 PHQLKE-ADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 66 ~~~l~~-ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.+...+ +|+|||=.--|. ..|-.+..-+..+
T Consensus 72 h~a~~~~~dgIIINpgAyT-HtSvAlrDAl~~v 103 (176)
T 2c4w_A 72 QESVGSEYEGIIINPGAFS-HTSIAIADAIMLA 103 (176)
T ss_dssp HHHHSSSCCEEEEECGGGG-GTCHHHHHHHHTS
T ss_pred HHhccCCeeEEEECcchhc-cchHHHHHHHHhC
Confidence 333455 889888765553 2344456666554
No 218
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=49.43 E-value=33 Score=27.37 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=31.3
Q ss_pred CceEEEEEecCCCh---HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGH---VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||.|+++..++- +-.=+..+.+.|.+ .|.++..+++..
T Consensus 3 ~~~v~vl~GG~S~E~evSl~S~~~v~~al~~-~~~~v~~i~i~~ 45 (364)
T 3i12_A 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDK-TRFDVVLLGIDK 45 (364)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred ccEEEEEeccCCCCccchHHHHHHHHHHHhh-cCCeEEEEEECC
Confidence 34799999876543 44667789999998 899999999864
No 219
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=49.42 E-value=53 Score=24.41 Aligned_cols=70 Identities=7% Similarity=0.071 Sum_probs=37.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCC----ceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLG----VEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g----~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
+||.|| ..|+ +...++..+.+ .| .+|.+++..... . . .. ......+.+.++|.||+.
T Consensus 5 m~i~ii---G~G~---mG~~~a~~l~~-~g~~~~~~v~~~~~~~~~-~------g--~~---~~~~~~~~~~~~D~vi~~ 65 (262)
T 2rcy_A 5 IKLGFM---GLGQ---MGSALAHGIAN-ANIIKKENLFYYGPSKKN-T------T--LN---YMSSNEELARHCDIIVCA 65 (262)
T ss_dssp SCEEEE---CCSH---HHHHHHHHHHH-HTSSCGGGEEEECSSCCS-S------S--SE---ECSCHHHHHHHCSEEEEC
T ss_pred CEEEEE---CcCH---HHHHHHHHHHH-CCCCCCCeEEEEeCCccc-C------c--eE---EeCCHHHHHhcCCEEEEE
Confidence 478776 3454 44445555544 45 577777654311 0 0 00 000123456789999999
Q ss_pred ccccCCcchHHHHHHHHhh
Q 028917 79 FPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 79 sP~y~g~~~~~~k~fld~~ 97 (202)
.|.+ .++..++.+
T Consensus 66 v~~~------~~~~v~~~l 78 (262)
T 2rcy_A 66 VKPD------IAGSVLNNI 78 (262)
T ss_dssp SCTT------THHHHHHHS
T ss_pred eCHH------HHHHHHHHH
Confidence 9965 245555555
No 220
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=49.41 E-value=18 Score=24.33 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=36.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCC-CCCCCCCcCC--hhhhccCCeeEEe
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAP-PKTNDVPVIR--PHQLKEADGFLFG 78 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~l~~ad~ii~g 78 (202)
..+|+|+ | .|. +...+++.|.+ .|.++.+++....... ........ ...|...... ...+.++|.+|+.
T Consensus 7 ~~~viIi-G--~G~---~G~~la~~L~~-~g~~v~vid~~~~~~~-~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 7 CNHALLV-G--YGR---VGSLLGEKLLA-SDIPLVVIETSRTRVD-ELRERGVRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp CSCEEEE-C--CSH---HHHHHHHHHHH-TTCCEEEEESCHHHHH-HHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCCEEEE-C--cCH---HHHHHHHHHHH-CCCCEEEEECCHHHHH-HHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 3456665 2 343 45566666666 7888999887532111 11111110 0001111011 1246789999999
Q ss_pred cccc
Q 028917 79 FPSR 82 (202)
Q Consensus 79 sP~y 82 (202)
+|.-
T Consensus 79 ~~~~ 82 (140)
T 3fwz_A 79 IPNG 82 (140)
T ss_dssp CSCH
T ss_pred CCCh
Confidence 9874
No 221
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=49.41 E-value=12 Score=22.16 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=20.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccC-CceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVL-GVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~-g~~v~~~~l~~ 42 (202)
||.+++.++.+--+.++++...+.+..++.. ++.+..+++.+
T Consensus 1 mm~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~ 43 (85)
T 1nho_A 1 MVVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV 43 (85)
T ss_dssp CCCCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT
T ss_pred CeEEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 6645554443334666555555444333311 34555555543
No 222
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=49.09 E-value=25 Score=24.97 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
|.++|.|+-. .||-. .+.+.+++ .|+++.+++- .+++.++|+|||.-
T Consensus 1 ~~p~Igi~~~--~~~~~----~~~~~l~~-~G~~~~~~~~-------------------------~~~l~~~dglil~G 47 (191)
T 2ywd_A 1 MRGVVGVLAL--QGDFR----EHKEALKR-LGIEAKEVRK-------------------------KEHLEGLKALIVPG 47 (191)
T ss_dssp --CCEEEECS--SSCHH----HHHHHHHT-TTCCCEEECS-------------------------GGGGTTCSEEEECS
T ss_pred CCcEEEEEec--CCchH----HHHHHHHH-CCCEEEEeCC-------------------------hhhhccCCEEEECC
Confidence 6667888743 35543 45666777 7877776531 12456789999864
No 223
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli}
Probab=48.74 E-value=15 Score=25.59 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=18.8
Q ss_pred CCceEEEEEecCCCh--HHHHHHHHHHHhhc
Q 028917 1 MATKIYIVYYSLYGH--VETMAREVQRGANS 29 (202)
Q Consensus 1 M~~kiliiy~S~~G~--T~~la~~i~~~~~~ 29 (202)
||+|||.|. +|| -..+|+.+.+.+..
T Consensus 7 mm~~VLFVC---~gN~cRSpmAEal~r~~~~ 34 (150)
T 2wmy_A 7 MFDSILVIC---TGNICRSPIGERLLRRLLP 34 (150)
T ss_dssp CCCEEEEEE---SSSSSHHHHHHHHHHHHCT
T ss_pred hcCEEEEEc---CCchHHHHHHHHHHHHhcC
Confidence 566888887 455 36799999888753
No 224
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=48.67 E-value=16 Score=29.27 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=42.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC--cCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP--VIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ad~ii~gsP 80 (202)
|||+|+ |+ |++-+ .+++.|.+ ..++.+.+....... .......... -|.. +.+.+.+.++|.||-..|
T Consensus 17 mkilvl-Ga--G~vG~---~~~~~L~~--~~~v~~~~~~~~~~~-~~~~~~~~~~-~d~~d~~~l~~~~~~~DvVi~~~p 86 (365)
T 3abi_A 17 MKVLIL-GA--GNIGR---AIAWDLKD--EFDVYIGDVNNENLE-KVKEFATPLK-VDASNFDKLVEVMKEFELVIGALP 86 (365)
T ss_dssp CEEEEE-CC--SHHHH---HHHHHHTT--TSEEEEEESCHHHHH-HHTTTSEEEE-CCTTCHHHHHHHHTTCSEEEECCC
T ss_pred cEEEEE-CC--CHHHH---HHHHHHhc--CCCeEEEEcCHHHHH-HHhccCCcEE-EecCCHHHHHHHHhCCCEEEEecC
Confidence 488877 65 76543 34455554 456777766431100 0110000000 1111 123456789999999999
Q ss_pred ccCCcchHHHHHHHHh
Q 028917 81 SRFGVMAAQCKAFFDA 96 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~ 96 (202)
-+.+ +..++.-++.
T Consensus 87 ~~~~--~~v~~~~~~~ 100 (365)
T 3abi_A 87 GFLG--FKSIKAAIKS 100 (365)
T ss_dssp GGGH--HHHHHHHHHH
T ss_pred Cccc--chHHHHHHhc
Confidence 8753 3455655554
No 225
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=48.64 E-value=25 Score=22.18 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=24.6
Q ss_pred CCceEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||..-++||++++ +.+.++-+ .|++ .|++.+.+|+.+
T Consensus 1 M~ta~I~vYs~~~Cp~C~~aK~----~L~~-~gi~y~~idi~~ 38 (92)
T 2lqo_A 1 MVTAALTIYTTSWCGYCLRLKT----ALTA-NRIAYDEVDIEH 38 (92)
T ss_dssp CCSSCEEEEECTTCSSHHHHHH----HHHH-TTCCCEEEETTT
T ss_pred CCCCcEEEEcCCCCHhHHHHHH----HHHh-cCCceEEEEcCC
Confidence 6655566677764 77775433 3444 688899999865
No 226
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Probab=48.49 E-value=9.9 Score=29.10 Aligned_cols=69 Identities=10% Similarity=0.062 Sum_probs=28.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceE-EEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEA-TLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
||+||.|| ..|+ +...++..+.+ . .++ .+++............... .- .+. .+.+.++|.||+++
T Consensus 1 M~m~I~iI---G~G~---mG~~la~~l~~-~-~~v~~v~~~~~~~~~~~~~~~g~-~~-~~~----~~~~~~~DvVilav 66 (276)
T 2i76_A 1 MSLVLNFV---GTGT---LTRFFLECLKD-R-YEIGYILSRSIDRARNLAEVYGG-KA-ATL----EKHPELNGVVFVIV 66 (276)
T ss_dssp ---CCEEE---SCCH---HHHHHHHTTC------CCCEECSSHHHHHHHHHHTCC-CC-CSS----CCCCC---CEEECS
T ss_pred CCceEEEE---eCCH---HHHHHHHHHHH-c-CcEEEEEeCCHHHHHHHHHHcCC-cc-CCH----HHHHhcCCEEEEeC
Confidence 66788877 2454 56667777765 4 444 2443321100011111111 10 111 12356799999999
Q ss_pred cccC
Q 028917 80 PSRF 83 (202)
Q Consensus 80 P~y~ 83 (202)
|...
T Consensus 67 ~~~~ 70 (276)
T 2i76_A 67 PDRY 70 (276)
T ss_dssp CTTT
T ss_pred ChHH
Confidence 9863
No 227
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=48.03 E-value=28 Score=27.62 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=29.2
Q ss_pred CceEEEEEecCCCh---HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGH---VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||+|+++....- +-.-+..+.+.+++ .|.++..+++..
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~-~g~~v~~i~~~~ 45 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDK-DKYHVDIIYITN 45 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHTSCT-TTEEEEEEEECT
T ss_pred CcEEEEEECCCCccchhHHHHHHHHHHHHhh-cCCEEEEEEEcC
Confidence 45899999765432 22445778899988 899999988753
No 228
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=47.86 E-value=23 Score=27.96 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=30.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|..|+...++...|.++..+..+++.+.+ .|.+|.++...
T Consensus 14 ~~~~~~~~~~p~~GG~~~~~~~la~~L~~-~G~~V~v~~~~ 53 (394)
T 2jjm_A 14 MKLKIGITCYPSVGGSGVVGTELGKQLAE-RGHEIHFITSG 53 (394)
T ss_dssp -CCEEEEECCC--CHHHHHHHHHHHHHHH-TTCEEEEECSS
T ss_pred heeeeehhcCCCCCCHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence 55667766665578888999999999998 89999988654
No 229
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=47.58 E-value=21 Score=21.78 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=20.9
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||++|. +|+++ .+.++++...+ ++ .|++++.+++..
T Consensus 10 ~M~~v~-ly~~~~Cp~C~~~~~~L----~~-~gi~~~~~~v~~ 46 (92)
T 3ic4_A 10 GMAEVL-MYGLSTCPHCKRTLEFL----KR-EGVDFEVIWIDK 46 (92)
T ss_dssp TCSSSE-EEECTTCHHHHHHHHHH----HH-HTCCCEEEEGGG
T ss_pred CCceEE-EEECCCChHHHHHHHHH----HH-cCCCcEEEEeee
Confidence 344544 46555 57777654443 33 466778888763
No 230
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=47.00 E-value=24 Score=27.82 Aligned_cols=69 Identities=10% Similarity=0.095 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc-CCcchHHHH
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR-FGVMAAQCK 91 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y-~g~~~~~~k 91 (202)
+|.+-..+...++.+++ .|++++++++....|.+. . .+.+.+.+++.||+.=--+ .|++-..+.
T Consensus 210 ~G~~~~~a~~Aa~~L~~-~Gi~v~vi~~~~l~P~d~-------------~-~i~~~~~~~~~vv~vEe~~~~gG~g~~v~ 274 (324)
T 1umd_B 210 YGTVMPEVLQAAAELAK-AGVSAEVLDLRTLMPWDY-------------E-AVMNSVAKTGRVVLVSDAPRHASFVSEVA 274 (324)
T ss_dssp CGGGHHHHHHHHHHHHH-TTCCEEEEECCEEETCCH-------------H-HHHHHHHHHSCEEEEEEEESTTCHHHHHH
T ss_pred ecHHHHHHHHHHHHHHh-cCCCEEEEEeceecCCCH-------------H-HHHHHHhcCCeEEEEecCCcCCCHHHHHH
Confidence 56667777788888888 899999999987533210 0 1234455555555542222 455555566
Q ss_pred HHHHh
Q 028917 92 AFFDA 96 (202)
Q Consensus 92 ~fld~ 96 (202)
.++..
T Consensus 275 ~~l~~ 279 (324)
T 1umd_B 275 ATIAE 279 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 231
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=47.00 E-value=35 Score=27.57 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=31.3
Q ss_pred ceEEEEEecCCCh---HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGH---VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||+|+++..+.- +-.=+..+.+.+++ .|.++..+++..
T Consensus 38 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~ 79 (383)
T 3k3p_A 38 ETLVLLYGGRSAERDVSVLSAESVMRAINY-DNFLVKTYFITQ 79 (383)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CeEEEEeCCCCCcchHHHHHHHHHHHHhhh-cCCEEEEEEecC
Confidence 4799999876543 45778889999998 899999999864
No 232
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=46.63 E-value=67 Score=24.81 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=18.3
Q ss_pred hhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 68 QLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 68 ~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
....+|.||+++|.|. +...++.+
T Consensus 64 ~~~~~D~vilavK~~~------~~~~l~~l 87 (307)
T 3ego_A 64 INSDFDLLVVTVKQHQ------LQSVFSSL 87 (307)
T ss_dssp CCSCCSEEEECCCGGG------HHHHHHHT
T ss_pred ccCCCCEEEEEeCHHH------HHHHHHHh
Confidence 3568999999999873 56666666
No 233
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=46.61 E-value=90 Score=23.41 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=33.3
Q ss_pred hhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCC-CCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 67 HQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALA-GKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~-gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
+.+.++|.||+.+|... .++..++.+. ..++ |+. ++..+. +. ......+...+...|..+++.
T Consensus 51 ~~~~~~D~vi~~v~~~~-----~~~~v~~~l~-----~~l~~~~~--vv~~s~---~~-~~~~~~l~~~~~~~g~~~~~~ 114 (289)
T 2cvz_A 51 ERVAEARVIFTCLPTTR-----EVYEVAEALY-----PYLREGTY--WVDATS---GE-PEASRRLAERLREKGVTYLDA 114 (289)
T ss_dssp GGGGGCSEEEECCSSHH-----HHHHHHHHHT-----TTCCTTEE--EEECSC---CC-HHHHHHHHHHHHTTTEEEEEC
T ss_pred HHHhCCCEEEEeCCChH-----HHHHHHHHHH-----hhCCCCCE--EEECCC---CC-HHHHHHHHHHHHHcCCEEEEe
Confidence 34678999999999742 2555555552 1232 332 222221 11 123445555666557666653
No 234
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=46.52 E-value=18 Score=28.57 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=26.2
Q ss_pred CCc-eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MAT-KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~-kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|.| ||+++.....|+...+. .+++.|.+ .|++|.++.-
T Consensus 2 m~M~~il~~~~~~~Ghv~~~~-~La~~L~~-~GheV~v~~~ 40 (402)
T 3ia7_A 2 MRQRHILFANVQGHGHVYPSL-GLVSELAR-RGHRITYVTT 40 (402)
T ss_dssp CCCCEEEEECCSSHHHHHHHH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCCCEEEEEeCCCCcccccHH-HHHHHHHh-CCCEEEEEcC
Confidence 544 88876554467765554 56777777 8999998764
No 235
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=46.50 E-value=41 Score=23.62 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=45.9
Q ss_pred ceEEEEEec-----------CCCh--HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh
Q 028917 3 TKIYIVYYS-----------LYGH--VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL 69 (202)
Q Consensus 3 ~kiliiy~S-----------~~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 69 (202)
+||+|+++= .||+ -+.+-+.+.+.+.+ .|++++++.-+. ..+.+. .+.+..
T Consensus 2 ~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~l~~~QSN~--EGeLId-------------~Ih~a~ 65 (154)
T 1uqr_A 2 KKILLLNGPNLNMLGKREPHIYGSQTLSDIEQHLQQSAQA-QGYELDYFQANG--EESLIN-------------RIHQAF 65 (154)
T ss_dssp CEEEEEECTTGGGTTCSSGGGTTCCCHHHHHHHHHHHHHH-TTCEEEEEECSS--HHHHHH-------------HHHHTT
T ss_pred CEEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeeCC--HHHHHH-------------HHHHhh
Confidence 479999874 1453 36677777777777 899988877543 111110 122334
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.++|+||+=.--|. ..|-.+..-+..+
T Consensus 66 ~~~dgiIINpgA~T-HtSvAlrDAl~~v 92 (154)
T 1uqr_A 66 QNTDFIIINPGAFT-HTSVAIRDALLAV 92 (154)
T ss_dssp TTCCEEEEECTTHH-HHCHHHHHHHHHH
T ss_pred hcCcEEEECcchhc-cchHHHHHHHHhC
Confidence 56889888655553 2233455555554
No 236
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=46.46 E-value=27 Score=21.18 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=20.3
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+++. +|+++ -+.++++...+. + .|++++.+++.
T Consensus 4 mm~~v~-~y~~~~C~~C~~~~~~L~----~-~~i~~~~vdv~ 39 (89)
T 2klx_A 4 SMKEII-LYTRPNCPYCKRARDLLD----K-KGVKYTDIDAS 39 (89)
T ss_dssp CCCCEE-EESCSCCTTTHHHHHHHH----H-HTCCEEEECSC
T ss_pred CcceEE-EEECCCChhHHHHHHHHH----H-cCCCcEEEECC
Confidence 665554 45555 577776555443 3 35567777664
No 237
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=45.90 E-value=36 Score=22.99 Aligned_cols=54 Identities=11% Similarity=-0.009 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccCCcchHHHHHHHH
Q 028917 16 VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRFGVMAAQCKAFFD 95 (202)
Q Consensus 16 T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld 95 (202)
+..+++.+++.+.+..+.++.++|+... -.-+|.+|++|..-.- .+++..|
T Consensus 3 ~~~l~~~i~~al~dkKa~DI~vlDv~~~-------------------------s~~~DyfVIatg~S~r----qv~Aiad 53 (125)
T 2o5a_A 3 NQELLQLAVNAVDDKKAEQVVALNMKGI-------------------------SLIADFFLICHGNSEK----QVQAIAH 53 (125)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEECBTT-------------------------BC--CEEEEEEESSHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEcCCC-------------------------CcccCEEEEEEcCCHH----HHHHHHH
Confidence 4678889999998856778999998752 1345889999876543 4555555
Q ss_pred hhh
Q 028917 96 ATY 98 (202)
Q Consensus 96 ~~~ 98 (202)
.+.
T Consensus 54 ~v~ 56 (125)
T 2o5a_A 54 ELK 56 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 238
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=45.78 E-value=1e+02 Score=23.83 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=61.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
+||-+|= -|+ |-..++.-|.+ .|.+|.++|.....-...... .... .....+....+|.||..-|.
T Consensus 4 ~kIgfIG---lG~---MG~~mA~~L~~-~G~~v~v~dr~~~~~~~l~~~-Ga~~-----a~s~~e~~~~~dvv~~~l~~- 69 (300)
T 3obb_A 4 KQIAFIG---LGH---MGAPMATNLLK-AGYLLNVFDLVQSAVDGLVAA-GASA-----ARSARDAVQGADVVISMLPA- 69 (300)
T ss_dssp CEEEEEC---CST---THHHHHHHHHH-TTCEEEEECSSHHHHHHHHHT-TCEE-----CSSHHHHHTTCSEEEECCSC-
T ss_pred CEEEEee---ehH---HHHHHHHHHHh-CCCeEEEEcCCHHHHHHHHHc-CCEE-----cCCHHHHHhcCCceeecCCc-
Confidence 4776662 333 22334444445 688999988753211111111 0000 00123456789999988886
Q ss_pred CCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCCc
Q 028917 83 FGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGYT 148 (202)
Q Consensus 83 ~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~~ 148 (202)
+..++..+.....+. ....+|+.+ +=.++.+ ......+...+..+|..+++.+..
T Consensus 70 ----~~~v~~V~~~~~g~~-~~~~~g~ii-Id~sT~~-----p~~~~~~a~~~~~~G~~~lDaPVs 124 (300)
T 3obb_A 70 ----SQHVEGLYLDDDGLL-AHIAPGTLV-LECSTIA-----PTSARKIHAAARERGLAMLDAPVS 124 (300)
T ss_dssp ----HHHHHHHHHSSSSST-TSCCC-CEE-EECSCCC-----HHHHHHHHHHHHTTTCEEEECCEE
T ss_pred ----hHHHHHHHhchhhhh-hcCCCCCEE-EECCCCC-----HHHHHHHHHHHHHcCCEEEecCCC
Confidence 355666654321100 011234432 2222221 234667888889999999975543
No 239
>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}
Probab=45.69 E-value=1.2e+02 Score=24.73 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=19.8
Q ss_pred CCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 106 LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 106 l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
++|+++++++......|..-....++...+...|+.+.
T Consensus 189 l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~ 226 (399)
T 3q98_A 189 LKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVT 226 (399)
T ss_dssp GTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEE
T ss_pred cCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEE
Confidence 57777766654321112212344555666666677654
No 240
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=44.96 E-value=35 Score=20.13 Aligned_cols=39 Identities=8% Similarity=-0.128 Sum_probs=22.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|++++.+.-+.++++...+.+-..+..++++..+|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~ 40 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRA 40 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 555543333588887766655543332467777777643
No 241
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=44.27 E-value=46 Score=26.36 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=30.1
Q ss_pred ceEEEEEec-C-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYS-L-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S-~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|||+++... + .|..++.+..+++.+.+ . .+|+++....
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~-~-~~V~v~~~~~ 40 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISK-A-HEVIVFGIHA 40 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTT-T-SEEEEEEESC
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHh-c-CCeEEEeecC
Confidence 389988743 3 57888899999999998 7 8999987643
No 242
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=44.02 E-value=13 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=25.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|||+++..+..|+...++ .++++|.+ .|.+|.++.-
T Consensus 16 MrIl~~~~~~~gh~~~~~-~La~~L~~-~GheV~v~~~ 51 (398)
T 4fzr_A 16 MRILVIAGCSEGFVMPLV-PLSWALRA-AGHEVLVAAS 51 (398)
T ss_dssp CEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEEE
T ss_pred eEEEEEcCCCcchHHHHH-HHHHHHHH-CCCEEEEEcC
Confidence 489888766566655443 56777887 8999988764
No 243
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=43.39 E-value=65 Score=25.09 Aligned_cols=72 Identities=19% Similarity=0.102 Sum_probs=37.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHH---HHhhcCCCCCCCCCCcCChhhh-c--cCCe
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSV---ILQKMKAPPKTNDVPVIRPHQL-K--EADG 74 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l-~--~ad~ 74 (202)
||.||.||= .|+ ++...++.+.+..+.+++++-+.+..+.. ..+...++. -+ ...+++ . +.|+
T Consensus 1 M~~rigiiG---~G~---ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~---~~--~~~~~ll~~~~vD~ 69 (334)
T 3ohs_X 1 MALRWGIVS---VGL---ISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPK---AY--GSYEELAKDPNVEV 69 (334)
T ss_dssp -CEEEEEEC---CSH---HHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSC---EE--SSHHHHHHCTTCCE
T ss_pred CccEEEEEC---chH---HHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCc---cc--CCHHHHhcCCCCCE
Confidence 777888873 454 44555666655223345666665543321 111111110 00 123333 2 5899
Q ss_pred eEEeccccC
Q 028917 75 FLFGFPSRF 83 (202)
Q Consensus 75 ii~gsP~y~ 83 (202)
|++++|...
T Consensus 70 V~i~tp~~~ 78 (334)
T 3ohs_X 70 AYVGTQHPQ 78 (334)
T ss_dssp EEECCCGGG
T ss_pred EEECCCcHH
Confidence 999999874
No 244
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=43.21 E-value=1e+02 Score=23.03 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=42.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCC--CCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPK--TNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
||.|| | .|+ +...++..+.+ .|.+|.+++-....-.. +........ .........+.+.++|.||+..|.
T Consensus 2 ~i~ii-G--~G~---~G~~~a~~l~~-~g~~V~~~~r~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~ 73 (291)
T 1ks9_A 2 KITVL-G--CGA---LGQLWLTALCK-QGHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (291)
T ss_dssp EEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred eEEEE-C--cCH---HHHHHHHHHHh-CCCCEEEEEcCccceee-EEEEcCCCceeeeeeeecCccccCCCCEEEEEecH
Confidence 77776 2 354 44566666666 68888887654321000 000000000 000000124557789999999999
Q ss_pred cCCcchHHHHHHHHhhh
Q 028917 82 RFGVMAAQCKAFFDATY 98 (202)
Q Consensus 82 y~g~~~~~~k~fld~~~ 98 (202)
+. +...++.+.
T Consensus 74 ~~------~~~v~~~l~ 84 (291)
T 1ks9_A 74 WQ------VSDAVKSLA 84 (291)
T ss_dssp GG------HHHHHHHHH
T ss_pred Hh------HHHHHHHHH
Confidence 74 455555553
No 245
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=43.06 E-value=43 Score=27.28 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=33.6
Q ss_pred ceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccCCC
Q 028917 3 TKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPETL 44 (202)
Q Consensus 3 ~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~~~ 44 (202)
+++-||.+|..| ++..+++.+.+.+++ .|.++.++-+.+..
T Consensus 265 ~~~GIIvgTLg~Q~~~~~~~~L~~ll~~-~Gkk~y~i~vg~in 306 (378)
T 3lzd_A 265 KKFGVIVSIKKGQLRLAEAKRIVKLLKK-HGREARLIVMNDVN 306 (378)
T ss_dssp CEEEEEEECSTTTCCHHHHHHHHHHHHH-TTCEEEEEEESSCC
T ss_pred CEEEEEEeCCccCCCHHHHHHHHHHHHH-cCCcEEEEEeCCCC
Confidence 457788888765 577899999999999 89999888887743
No 246
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=42.63 E-value=25 Score=27.59 Aligned_cols=83 Identities=13% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCC-CC-CCC--CCCc-CChhhhccCCee
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKA-PP-KTN--DVPV-IRPHQLKEADGF 75 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~-~~-~~~--~~~~-~~~~~l~~ad~i 75 (202)
|-+||.|| ..|+ +...++..+.+ .|.+|.+++-....- +.+..... .. ... .... ....++.++|.|
T Consensus 13 ~~~kI~iI---G~G~---mG~ala~~L~~-~G~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~aDvV 84 (335)
T 1z82_A 13 MEMRFFVL---GAGS---WGTVFAQMLHE-NGEEVILWARRKEIV-DLINVSHTSPYVEESKITVRATNDLEEIKKEDIL 84 (335)
T ss_dssp -CCEEEEE---CCSH---HHHHHHHHHHH-TTCEEEEECSSHHHH-HHHHHHSCBTTBTTCCCCSEEESCGGGCCTTEEE
T ss_pred cCCcEEEE---CcCH---HHHHHHHHHHh-CCCeEEEEeCCHHHH-HHHHHhCCcccCCCCeeeEEEeCCHHHhcCCCEE
Confidence 55688877 3454 55566666666 788888876532100 11111110 00 000 0000 112237789999
Q ss_pred EEeccccCCcchHHHHHHHHhh
Q 028917 76 LFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 76 i~gsP~y~g~~~~~~k~fld~~ 97 (202)
|+..|.+ .+...++.+
T Consensus 85 il~vk~~------~~~~v~~~l 100 (335)
T 1z82_A 85 VIAIPVQ------YIREHLLRL 100 (335)
T ss_dssp EECSCGG------GHHHHHTTC
T ss_pred EEECCHH------HHHHHHHHh
Confidence 9999964 355555544
No 247
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=42.22 E-value=32 Score=26.06 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|. |++||-++..| |-+++++.+.+ .|+.|-+.+..+
T Consensus 1 Mn-K~vlVTGas~G----IG~aia~~la~-~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MN-RGVIVTGGGHG----IGKQICLDFLE-AGDKVCFIDIDE 36 (247)
T ss_dssp -C-CEEEEESTTSH----HHHHHHHHHHH-TTCEEEEEESCH
T ss_pred CC-CEEEEecCCCH----HHHHHHHHHHH-CCCEEEEEeCCH
Confidence 44 77777655555 66677777777 799988888754
No 248
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=41.63 E-value=50 Score=22.10 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=24.9
Q ss_pred EEEEEecC-CChH--HHHHHHHHHHhhccCCceEEEEEccC
Q 028917 5 IYIVYYSL-YGHV--ETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 5 iliiy~S~-~G~T--~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+++||.|+ .|++ ++=...+..-|+. .|++.+.+|+..
T Consensus 1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~-kgV~feEidI~~ 40 (121)
T 1u6t_A 1 VIRVYIASSSGSTAIKKKQQDVLGFLEA-NKIGFEEKDIAA 40 (121)
T ss_dssp CEEEEECTTCSCHHHHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred CEEEEecCCCCCccchHHHHHHHHHHHH-CCCceEEEECCC
Confidence 35677776 5765 4444455555666 789999999974
No 249
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=41.62 E-value=67 Score=26.77 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=27.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.+.+.+.+.....+|+.|++.+++ .|+++++..+.
T Consensus 346 l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 381 (509)
T 1uqw_A 346 TTLWSSHNHSTAQKVLQFTQQQLAQ-VGIKAQVTAMD 381 (509)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHH-TTEEEEEEEEC
T ss_pred EEEEecCCCchHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 4455544455678899999999999 89998876653
No 250
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=41.50 E-value=22 Score=26.37 Aligned_cols=21 Identities=33% Similarity=0.361 Sum_probs=16.9
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.+.|.|+|.||. .++.|++.+
T Consensus 160 ~~~d~v~ftS~s-------~v~~~~~~~ 180 (229)
T 3p9z_A 160 KEKSILIFTAIS-------HAKAFLHYF 180 (229)
T ss_dssp CTTCEEEECSHH-------HHHHHHHHS
T ss_pred CCCeEEEEECHH-------HHHHHHHHh
Confidence 467999999986 678888876
No 251
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=41.35 E-value=28 Score=26.00 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=27.2
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.+++.+.+.....+++.|++.+++ .|++|++..+.
T Consensus 130 l~l~~~~~~~~~~~~a~~iq~~l~~-iGi~v~i~~~~ 165 (258)
T 3lvu_A 130 LRFLLRQGDSDMQTVLEIYTRALER-LGIAAQIEKVD 165 (258)
T ss_dssp CEEEEETTCHHHHHHHHHHHHHHHT-TTCCCEEEEEC
T ss_pred EEEEecCCChhHHHHHHHHHHHHHH-cCCeeEEEecC
Confidence 3455544445678899999999999 89998887653
No 252
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=41.23 E-value=91 Score=23.19 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=28.4
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+++...
T Consensus 10 ~Igvv~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 48 (291)
T 3egc_A 10 VVGLIVSDIENVFFAEVASGVESEARH-KGYSVLLANTAE 48 (291)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHH-TTCEEEEEECTT
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 466666444 34567889999999999 899988887654
No 253
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=41.22 E-value=34 Score=22.61 Aligned_cols=40 Identities=13% Similarity=-0.079 Sum_probs=27.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+++|++.+. .+-++...++...+-++. .+.++.++.+.+
T Consensus 1 M~~~ILv~vD-~s~~s~~al~~A~~la~~-~~a~l~ll~v~~ 40 (147)
T 3hgm_A 1 MFNRIMVPVD-GSKGAVKALEKGVGLQQL-TGAELYILCVFK 40 (147)
T ss_dssp CCSEEEEECC-SBHHHHHHHHHHHHHHHH-HCCEEEEEEEEC
T ss_pred CCceEEEEeC-CCHHHHHHHHHHHHHHHh-cCCEEEEEEEec
Confidence 7888888762 233556667776666665 678889888865
No 254
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=40.98 E-value=36 Score=26.73 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=34.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHH---HHhhcCCCCCCCCCCcCChh-hhc--cCCe
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSV---ILQKMKAPPKTNDVPVIRPH-QLK--EADG 74 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~--~ad~ 74 (202)
||+||.||= .|+ ++...+..+.+..+ ++++-+.+..+.. ..+....+. -+ ...+ .+. +.|+
T Consensus 1 M~~rvgiIG---~G~---~g~~~~~~l~~~~~--~~l~av~d~~~~~~~~~~~~~~~~~---~~--~~~~~ll~~~~~D~ 67 (344)
T 3ezy_A 1 MSLRIGVIG---LGR---IGTIHAENLKMIDD--AILYAISDVREDRLREMKEKLGVEK---AY--KDPHELIEDPNVDA 67 (344)
T ss_dssp -CEEEEEEC---CSH---HHHHHHHHGGGSTT--EEEEEEECSCHHHHHHHHHHHTCSE---EE--SSHHHHHHCTTCCE
T ss_pred CeeEEEEEc---CCH---HHHHHHHHHHhCCC--cEEEEEECCCHHHHHHHHHHhCCCc---ee--CCHHHHhcCCCCCE
Confidence 777888873 454 44455666654234 4444444433321 111111110 00 1222 333 7899
Q ss_pred eEEeccccC
Q 028917 75 FLFGFPSRF 83 (202)
Q Consensus 75 ii~gsP~y~ 83 (202)
|++++|...
T Consensus 68 V~i~tp~~~ 76 (344)
T 3ezy_A 68 VLVCSSTNT 76 (344)
T ss_dssp EEECSCGGG
T ss_pred EEEcCCCcc
Confidence 999999864
No 255
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=40.65 E-value=45 Score=21.78 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=25.5
Q ss_pred CCceEEEEE-ecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVY-YSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy-~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+++|++.+ +|.. +...++...+-++. .|.++.++.+.
T Consensus 3 ~~~~ILv~~D~s~~--s~~al~~a~~la~~-~~a~l~ll~v~ 41 (138)
T 1q77_A 3 AMKVLLVLTDAYSD--CEKAITYAVNFSEK-LGAELDILAVL 41 (138)
T ss_dssp CCEEEEEEESTTCC--CHHHHHHHHHHHTT-TCCEEEEEEEC
T ss_pred cccEEEEEccCCHh--HHHHHHHHHHHHHH-cCCeEEEEEEe
Confidence 667888877 4443 45566666666665 67888888875
No 256
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=40.64 E-value=32 Score=24.39 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=29.7
Q ss_pred eEEEEEecCCC-hHHHHHHHHHHHhhccCCc-eEEEEEccCC
Q 028917 4 KIYIVYYSLYG-HVETMAREVQRGANSVLGV-EATLWQVPET 43 (202)
Q Consensus 4 kiliiy~S~~G-~T~~la~~i~~~~~~~~g~-~v~~~~l~~~ 43 (202)
||.||...=+- -|+.|.+-..+.+++ .|+ +++++.++-.
T Consensus 19 ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~~~i~v~~VPGa 59 (160)
T 2c92_A 19 RLAIVASSWHGKICDALLDGARKVAAG-CGLDDPTVVRVLGA 59 (160)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHHHH-TTCSCCEEEEESSG
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCceEEEECCcH
Confidence 78887755443 478899999999988 787 6788888653
No 257
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=40.46 E-value=1.1e+02 Score=22.57 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=28.4
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+++...
T Consensus 9 ~Igvi~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~ 47 (276)
T 3jy6_A 9 LIAVIVANIDDYFSTELFKGISSILES-RGYIGVLFDANA 47 (276)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHT-TTCEEEEEECTT
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 466666554 34567899999999999 899888877654
No 258
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=40.44 E-value=86 Score=21.44 Aligned_cols=28 Identities=7% Similarity=-0.089 Sum_probs=20.6
Q ss_pred hhhh-ccCCeeEEeccccCCcchHHHHHH
Q 028917 66 PHQL-KEADGFLFGFPSRFGVMAAQCKAF 93 (202)
Q Consensus 66 ~~~l-~~ad~ii~gsP~y~g~~~~~~k~f 93 (202)
.+.+ .+.|+|++-+=.|.|++......+
T Consensus 54 i~~~~~~~~gvliLtDl~GGSp~n~a~~l 82 (144)
T 3lfh_A 54 IKEKLQEDKEIIIVVDLFGGSPFNIALSM 82 (144)
T ss_dssp HHHHHTTTCEEEEEESSSSSHHHHHHHHH
T ss_pred HHHhhCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 4455 667999999999989876655544
No 259
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=40.38 E-value=54 Score=26.42 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=31.0
Q ss_pred ceEEEEEecCCCh---HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGH---VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||.|++|..++- +-.=+..+.+.|++ .|.+|..+++..
T Consensus 23 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~-~~~~v~~i~i~~ 64 (386)
T 3e5n_A 23 IRVGLIFGGKSAEHEVSLQSARNILDALDP-QRFEPVLIGIDK 64 (386)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred ceEEEEeccCCCCchhHHHHHHHHHHHhCc-cCCEEEEEEECC
Confidence 4799999876543 44677889999998 899999999864
No 260
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=40.34 E-value=31 Score=26.92 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=11.3
Q ss_pred cCCeeEEeccccC
Q 028917 71 EADGFLFGFPSRF 83 (202)
Q Consensus 71 ~ad~ii~gsP~y~ 83 (202)
+.|+|++.+|...
T Consensus 63 ~~D~V~i~tp~~~ 75 (331)
T 4hkt_A 63 DIDAVVICTPTDT 75 (331)
T ss_dssp TCCEEEECSCGGG
T ss_pred CCCEEEEeCCchh
Confidence 7899999999864
No 261
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=39.84 E-value=16 Score=29.18 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=25.5
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|+||+++.....|+...+. .+++.|.+ .|.+|.++.-
T Consensus 20 m~rIl~~~~~~~GHv~p~l-~La~~L~~-~Gh~V~v~~~ 56 (415)
T 3rsc_A 20 MAHLLIVNVASHGLILPTL-TVVTELVR-RGHRVSYVTA 56 (415)
T ss_dssp CCEEEEECCSCHHHHGGGH-HHHHHHHH-TTCEEEEEEC
T ss_pred CCEEEEEeCCCccccccHH-HHHHHHHH-CCCEEEEEeC
Confidence 3488887654467765544 56677777 7999998774
No 262
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=39.67 E-value=1.4e+02 Score=23.59 Aligned_cols=59 Identities=15% Similarity=0.087 Sum_probs=30.3
Q ss_pred eccccCCc--chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 78 GFPSRFGV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 78 gsP~y~g~--~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
..|++|+. ..-+.+.++|-+.-.-..+.++|+++++++- +. .+..++...+...|+.+.
T Consensus 123 ~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~l~gl~va~vGD------~~-~va~Sl~~~~~~~G~~v~ 183 (321)
T 1oth_A 123 SIPIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGD------GN-NILHSIMMSAAKFGMHLQ 183 (321)
T ss_dssp SSCEEESCCSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESC------SS-HHHHHHHTTTGGGTCEEE
T ss_pred CCCEEcCCCCCCCcHHHHHHHHHHHHHhCCcCCcEEEEECC------ch-hhHHHHHHHHHHcCCeEE
Confidence 35777643 1223455666543111124678888766532 11 345555555666676654
No 263
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=39.47 E-value=58 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.0
Q ss_pred hhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 68 QLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 68 ~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.+.++|.||+..|.+ .+...++.+
T Consensus 68 ~~~~~D~vi~~v~~~------~~~~v~~~i 91 (335)
T 1txg_A 68 CLENAEVVLLGVSTD------GVLPVMSRI 91 (335)
T ss_dssp HHTTCSEEEECSCGG------GHHHHHHHH
T ss_pred HHhcCCEEEEcCChH------HHHHHHHHH
Confidence 367899999999987 345555555
No 264
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=39.46 E-value=1.2e+02 Score=22.70 Aligned_cols=77 Identities=10% Similarity=-0.021 Sum_probs=41.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||.|| ..|+ +...++..+.+ .|.+|.+++...... ........... .. ...+++.++|.||+..|.+
T Consensus 2 ~i~ii---G~G~---~G~~~a~~l~~-~g~~V~~~~~~~~~~-~~~~~~g~~~~---~~-~~~~~~~~~D~vi~av~~~- 68 (279)
T 2f1k_A 2 KIGVV---GLGL---IGASLAGDLRR-RGHYLIGVSRQQSTC-EKAVERQLVDE---AG-QDLSLLQTAKIIFLCTPIQ- 68 (279)
T ss_dssp EEEEE---CCSH---HHHHHHHHHHH-TTCEEEEECSCHHHH-HHHHHTTSCSE---EE-SCGGGGTTCSEEEECSCHH-
T ss_pred EEEEE---cCcH---HHHHHHHHHHH-CCCEEEEEECCHHHH-HHHHhCCCCcc---cc-CCHHHhCCCCEEEEECCHH-
Confidence 67776 2454 55666777776 687777765432100 11111111000 00 1122337899999999975
Q ss_pred CcchHHHHHHHHhhh
Q 028917 84 GVMAAQCKAFFDATY 98 (202)
Q Consensus 84 g~~~~~~k~fld~~~ 98 (202)
.+..+++.+.
T Consensus 69 -----~~~~~~~~l~ 78 (279)
T 2f1k_A 69 -----LILPTLEKLI 78 (279)
T ss_dssp -----HHHHHHHHHG
T ss_pred -----HHHHHHHHHH
Confidence 4566666653
No 265
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=39.38 E-value=55 Score=28.41 Aligned_cols=74 Identities=5% Similarity=-0.125 Sum_probs=49.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccC-CeeEEecc-cc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEA-DGFLFGFP-SR 82 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-d~ii~gsP-~y 82 (202)
++|| .+|..-..|...++.|++ .|++++++++....|.+ .. .+.+.+.+. ..||+.-- .-
T Consensus 501 v~iv---a~G~~v~~al~Aa~~L~~-~Gi~v~Vidlr~l~PlD-------------~e-~i~~~~~~~~~~vvvvEe~~~ 562 (616)
T 3mos_A 501 VTVI---GAGVTLHEALAAAELLKK-EKINIRVLDPFTIKPLD-------------RK-LILDSARATKGRILTVEDHYY 562 (616)
T ss_dssp EEEE---CCTHHHHHHHHHHHHHHT-TTCEEEEEECSEEESCC-------------HH-HHHHHHHHTTTEEEEEEEEES
T ss_pred EEEE---EeCHHHHHHHHHHHHHHh-cCCCEEEEEeCccCCCC-------------HH-HHHHHHHhcCCEEEEEcCCCC
Confidence 5555 367777888888899988 89999999998754421 00 134556676 66666643 33
Q ss_pred CCcchHHHHHHHHh
Q 028917 83 FGVMAAQCKAFFDA 96 (202)
Q Consensus 83 ~g~~~~~~k~fld~ 96 (202)
.|++-+.+..++..
T Consensus 563 ~GG~G~~v~~~l~~ 576 (616)
T 3mos_A 563 EGGIGEAVSSAVVG 576 (616)
T ss_dssp TTSHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHh
Confidence 57777777766643
No 266
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=39.36 E-value=34 Score=22.61 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=26.4
Q ss_pred ceEEEEEecCCChHH-HHHHHHHHHhhccCC--ceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVE-TMAREVQRGANSVLG--VEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~-~la~~i~~~~~~~~g--~~v~~~~l~~ 42 (202)
+|++||..|.+-.+. .++=.++..+.+ .| .+|+++-..+
T Consensus 8 ~K~~ivi~s~d~~~~~~~al~~A~~a~~-~G~~~eV~i~~~G~ 49 (117)
T 2fb6_A 8 DKLTILWTTDNKDTVFNMLAMYALNSKN-RGWWKHINIILWGA 49 (117)
T ss_dssp SEEEEEECCCCHHHHHHTHHHHHHHHHH-HTSCSEEEEEECSH
T ss_pred CeEEEEEEcCChHHHHHHHHHHHHHHHH-cCCCCcEEEEEECC
Confidence 489999888654443 446666666666 67 6898876643
No 267
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=38.84 E-value=63 Score=21.06 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=25.1
Q ss_pred CCceEEEEE-ecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVY-YSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy-~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|.++|++.+ +|. ++..+++...+-++. .+.++.++.+.
T Consensus 1 m~~~ILv~~D~s~--~s~~al~~a~~la~~-~~a~l~ll~v~ 39 (141)
T 1jmv_A 1 MYKHILVAVDLSE--ESPILLKKAVGIAKR-HDAKLSIIHVD 39 (141)
T ss_dssp CCSEEEEEECCST--THHHHHHHHHHHHHH-HTCEEEEEEEE
T ss_pred CCceEEEEecCch--hhHHHHHHHHHHHHh-cCCEEEEEEEe
Confidence 777888877 343 345556665555555 57788888775
No 268
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=38.80 E-value=34 Score=24.40 Aligned_cols=97 Identities=13% Similarity=-0.068 Sum_probs=48.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChh--hhccCCeeEEec--
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPH--QLKEADGFLFGF-- 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~ad~ii~gs-- 79 (202)
|+++|. ..+|..+.=+-...+.+++ +|++|+++....... .....-... .| ...+ +..++|+||+--
T Consensus 9 ~~v~il-~~~gFe~~E~~~p~~~l~~-ag~~V~~~s~~~~~v---~~~~G~~v~-~d---~~l~~v~~~~yD~liiPGG~ 79 (177)
T 4hcj_A 9 NILYVM-SGQNFQDEEYFESKKIFES-AGYKTKVSSTFIGTA---QGKLGGMTN-ID---LLFSEVDAVEFDAVVFVGGI 79 (177)
T ss_dssp EEEEEC-CSEEECHHHHHHHHHHHHH-TTCEEEEEESSSEEE---EETTSCEEE-EC---EEGGGCCGGGCSEEEECCSG
T ss_pred CEEEEE-CCCCccHHHHHHHHHHHHH-CCCEEEEEECCCCeE---eeCCCCEEe-cC---ccHHHCCHhHCCEEEECCCc
Confidence 454444 2345433223346677777 899999988754100 000000000 01 1122 356899999842
Q ss_pred cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 80 PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 80 P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
....-.-.+.+..|+.+... +||+++.+++
T Consensus 80 g~~~l~~~~~~~~~l~~~~~-------~~k~iaaIC~ 109 (177)
T 4hcj_A 80 GCITLWDDWRTQGLAKLFLD-------NQKIVAGIGS 109 (177)
T ss_dssp GGGGGTTCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred cHHHHhhCHHHHHHHHHHHH-------hCCEEEEecc
Confidence 11222234567777776632 5676666543
No 269
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=38.79 E-value=51 Score=21.58 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=23.0
Q ss_pred ceEEEEE-ecCCChHH-HHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVY-YSLYGHVE-TMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy-~S~~G~T~-~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|++++. .||+|+.. .-+-.++..+.. .+.++.++-+.|
T Consensus 2 kk~~~vv~~~P~g~~~~~~al~~a~a~~a-~~~~v~vff~~D 42 (119)
T 2d1p_B 2 KRIAFVFSTAPHGTAAGREGLDALLATSA-LTDDLAVFFIAD 42 (119)
T ss_dssp CCEEEEECSCTTTSTHHHHHHHHHHHHHT-TCSCEEEEECGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEehH
Confidence 3676555 66787642 333344444444 567888888776
No 270
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Probab=38.64 E-value=19 Score=25.67 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=19.0
Q ss_pred CCceEEEEEecCCCh--HHHHHHHHHHHhhc
Q 028917 1 MATKIYIVYYSLYGH--VETMAREVQRGANS 29 (202)
Q Consensus 1 M~~kiliiy~S~~G~--T~~la~~i~~~~~~ 29 (202)
||+|||.|. +|| -..+|+.+.+.+..
T Consensus 25 mm~~VLFVC---tgNicRSpmAEal~r~~~~ 52 (168)
T 2wja_A 25 MFDSILVIC---TGNICRSPIGERLLRRLLP 52 (168)
T ss_dssp HCSEEEEEE---SSSSSHHHHHHHHHHHHST
T ss_pred ccCEEEEEc---CCcHHHHHHHHHHHHHhcC
Confidence 566888887 455 36799999888753
No 271
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=38.60 E-value=61 Score=25.99 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=30.7
Q ss_pred eEEEEEecCCC---hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSLYG---HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~~G---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||.|+||..++ =+-+=+..+.+.|.. .|.+|..+++..
T Consensus 6 ~v~vl~GG~S~E~evSl~Sa~~v~~~l~~-~~~~v~~i~i~~ 46 (372)
T 3tqt_A 6 HISVLCGGQSTEHEISIQSAKNIVNTLDA-AKYLISVIFIDH 46 (372)
T ss_dssp EEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred EEEEEeccCCCccHhHHHHHHHHHHHHhh-cCceEEEEEECC
Confidence 69999986654 356678889999988 899999999864
No 272
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=38.45 E-value=58 Score=27.83 Aligned_cols=49 Identities=12% Similarity=0.279 Sum_probs=29.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
++|+|+-+- .||+..+ .+.+++ .|+++.+++..+ . ..+.++|+|||.-|
T Consensus 5 ~~I~Iid~~-~g~~~~~----~~~l~~-~G~~~~vv~~~~----------------------~-~~l~~~DglILpGg 53 (555)
T 1jvn_A 5 PVVHVIDVE-SGNLQSL----TNAIEH-LGYEVQLVKSPK----------------------D-FNISGTSRLILPGV 53 (555)
T ss_dssp CEEEEECCS-CSCCHHH----HHHHHH-TTCEEEEESSGG----------------------G-CCSTTCSCEEEEEC
T ss_pred CEEEEEECC-CCCHHHH----HHHHHH-CCCEEEEECCcc----------------------c-cccccCCEEEECCC
Confidence 478888542 3566544 445555 687777654211 1 23568999999543
No 273
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.13 E-value=78 Score=20.27 Aligned_cols=37 Identities=19% Similarity=0.156 Sum_probs=22.2
Q ss_pred eEEEEEecC-CChHH--HHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVE--TMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~--~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|. ||+++ -+.++ +-.+.+.+.|++ .|++++.+|+..
T Consensus 9 ~V~-vy~~~~C~~C~~~~~~~~ak~~L~~-~gi~y~~vdI~~ 48 (111)
T 2ct6_A 9 VIR-VFIASSSGFVAIKKKQQDVVRFLEA-NKIEFEEVDITM 48 (111)
T ss_dssp CEE-EEECSSCSCHHHHHHHHHHHHHHHH-TTCCEEEEETTT
T ss_pred EEE-EEEcCCCCCcccchhHHHHHHHHHH-cCCCEEEEECCC
Confidence 455 45554 46555 233344445555 688899999875
No 274
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=37.77 E-value=1.6e+02 Score=23.79 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=18.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|+++-++.. . .+.+.+.+ .|+++.++...
T Consensus 192 ~V~viD~G~k---~----ni~r~L~~-~G~~v~vvp~~ 221 (379)
T 1a9x_B 192 HVVAYDFGAK---R----NILRMLVD-RGCRLTIVPAQ 221 (379)
T ss_dssp EEEEEESSCC---H----HHHHHHHH-TTEEEEEEETT
T ss_pred EEEEEECCCh---H----HHHHHHHH-CCCEEEEEecc
Confidence 6777765332 2 25555666 68888887653
No 275
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=37.77 E-value=20 Score=26.65 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=22.5
Q ss_pred ccCCeeEEeccccCCc-chHHHHHHHHhhhhhh
Q 028917 70 KEADGFLFGFPSRFGV-MAAQCKAFFDATYELW 101 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~-~~~~~k~fld~~~~~~ 101 (202)
..+|.+|+|+|+|... +...++.+.+.+..+|
T Consensus 188 aGad~~VvG~~I~~a~dp~~a~~~~~~~~~~~~ 220 (221)
T 3exr_A 188 VDVFTFIAGRGITEAKNPAGAARAFKDEIKRIW 220 (221)
T ss_dssp CCCSEEEECHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEECchhhCCCCHHHHHHHHHHHHHHHh
Confidence 3478999999999754 4555677766665544
No 276
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=37.76 E-value=61 Score=25.45 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=31.4
Q ss_pred ceEEEEEecCCC---hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYG---HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||.|+++-.+. =+-.-+..+++.+++ .|.++..+++..
T Consensus 4 ~~v~vl~GG~s~e~~vSl~sa~~v~~al~~-~g~~v~~i~~~~ 45 (346)
T 3se7_A 4 MKIGIIFGGVSEEHDISVKSAREVATHLGT-GVFEPFYLGITK 45 (346)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CEEEEEeeecCCCccHHHHHHHHHHHHhcc-cCCEEEEEEECC
Confidence 489999986544 356678889999988 899999999864
No 277
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=37.52 E-value=61 Score=24.69 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=30.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
|.+.|-.|+.-+.+. .+.+++.+++ .|++++++...|+
T Consensus 6 k~i~vgat~~P~aei-l~~vk~~l~k-~Gi~leiv~F~Dy 43 (249)
T 4got_A 6 KEIVVAATKTPHAEI-LKEAEPLLKE-KGYTLKVKVLSDY 43 (249)
T ss_dssp TEEEEEECTTTHHHH-HHHHHHHHHT-TTCEEEEECCSST
T ss_pred ceEEEEeCCCCHHHH-HHHHHHHHHh-cCCeEEEEEeCCc
Confidence 455566677777774 5888999999 8999999999986
No 278
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=37.46 E-value=40 Score=23.36 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=37.5
Q ss_pred CceEEEEEecCCChH--HHHHHHHHHHhhccCCceEEEEEccCC---CcH--HHHhhcCCCCCCCCCCc-CChhhhccCC
Q 028917 2 ATKIYIVYYSLYGHV--ETMAREVQRGANSVLGVEATLWQVPET---LSS--VILQKMKAPPKTNDVPV-IRPHQLKEAD 73 (202)
Q Consensus 2 ~~kiliiy~S~~G~T--~~la~~i~~~~~~~~g~~v~~~~l~~~---~~~--~~~~~~~~~~~~~~~~~-~~~~~l~~ad 73 (202)
|+|||.|. +||+ ..||+.+.+.+.. ..+++.--=+... .|. ..++...-... ...+. ....++.++|
T Consensus 20 ~~~VLFVC---~gN~cRSpmAEal~~~~~~-~~~~v~SAGt~~g~~~dp~a~~vl~e~Gidis-~h~ar~l~~~~~~~~D 94 (148)
T 3rh0_A 20 MKSVLFVC---VGNGGKSQMAAALAQKYAS-DSVEIHSAGTKPAQGLNQLSVESIAEVGADMS-QGIPKAIDPELLRTVD 94 (148)
T ss_dssp CCEEEEEE---SSSSSHHHHHHHHHHHHCC-TTSEEEEEESSCCSSCCHHHHHHHHHTTCCCT-TCCCCBCCHHHHHHCS
T ss_pred CCEEEEEC---CCchhHHHHHHHHHHHhcC-CCEEEEecccCCCCCCCHHHHHHHHHcCCCcC-CCeeeECCHHHhcCCC
Confidence 55788887 4553 6799999888764 3444443223221 111 11221111110 11111 1345677888
Q ss_pred eeEEeccc
Q 028917 74 GFLFGFPS 81 (202)
Q Consensus 74 ~ii~gsP~ 81 (202)
.||.-...
T Consensus 95 lIitM~~~ 102 (148)
T 3rh0_A 95 RVVILGDD 102 (148)
T ss_dssp EEEEESSS
T ss_pred EEEEecCh
Confidence 88877543
No 279
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=37.44 E-value=39 Score=26.87 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHhhccC-CceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec-cccCCcchHHH
Q 028917 13 YGHVETMAREVQRGANSVL-GVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF-PSRFGVMAAQC 90 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs-P~y~g~~~~~~ 90 (202)
+|.+-..+...++.+++ . |++++++++....|.+. . .+.+.+.+++.+|+.= ....|++-..+
T Consensus 227 ~G~~~~~a~~Aa~~L~~-~~Gi~v~vi~~~~l~P~d~-------------~-~i~~~~~~~~~vv~vEe~~~~gg~g~~v 291 (342)
T 2bfd_B 227 WGTQVHVIREVASMAKE-KLGVSCEVIDLRTIIPWDV-------------D-TICKSVIKTGRLLISHEAPLTGGFASEI 291 (342)
T ss_dssp CTTHHHHHHHHHHHHHH-HHCCCEEEEECCEEESCCH-------------H-HHHHHHHHHSCEEEEEEEESTTCHHHHH
T ss_pred ECHHHHHHHHHHHHHHh-hcCCCEEEEeeeecCCCCH-------------H-HHHHHHhcCCEEEEEEeCccCCcHHHHH
Confidence 67777788888888887 7 99999999986433210 0 1234445555544442 22246665666
Q ss_pred HHHHHh
Q 028917 91 KAFFDA 96 (202)
Q Consensus 91 k~fld~ 96 (202)
..++..
T Consensus 292 ~~~l~~ 297 (342)
T 2bfd_B 292 SSTVQE 297 (342)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655543
No 280
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=37.25 E-value=79 Score=20.78 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=21.8
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+.||+.++-.+-+-|..+. ++ .|++++.+|+.+.
T Consensus 5 i~iY~~~~C~~c~ka~~~L---~~-~gi~~~~~di~~~ 38 (120)
T 3fz4_A 5 LTFYEYPKCSTCRRAKAEL---DD-LAWDYDAIDIKKN 38 (120)
T ss_dssp EEEEECSSCHHHHHHHHHH---HH-HTCCEEEEETTTS
T ss_pred EEEEeCCCChHHHHHHHHH---HH-cCCceEEEEeccC
Confidence 4568887644444444433 34 5888999999763
No 281
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=36.89 E-value=47 Score=23.73 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=44.8
Q ss_pred ceEEEEEecC-----------CCh--HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh
Q 028917 3 TKIYIVYYSL-----------YGH--VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL 69 (202)
Q Consensus 3 ~kiliiy~S~-----------~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 69 (202)
|||+|+++=. +|+ -+.+.+.+.+.+.+ .|++++++.-+. ..+.+. .+.+..
T Consensus 29 M~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~-~G~~l~~~QSN~--EGeLId-------------~Ih~A~ 92 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAE-LGLKAVVRQSDS--EAQLLD-------------WIHQAA 92 (172)
T ss_dssp CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHH-TTCEEEEEECSC--HHHHHH-------------HHHHHH
T ss_pred CEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCC--HHHHHH-------------HHHHhh
Confidence 3899998742 342 35566677777777 899998887653 111110 122334
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHh
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDA 96 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~ 96 (202)
.++|+|||=.--|.. .+-.+...+..
T Consensus 93 ~~~dgIIINPgAyTH-tSvAlrDAL~~ 118 (172)
T 3n8k_A 93 DAAEPVILNAGGLTH-TSVALRDACAE 118 (172)
T ss_dssp HHTCCEEEECGGGGG-TCHHHHHHHTT
T ss_pred hcCcEEEECcchhhh-hhHHHHHHHHh
Confidence 568999987766642 22344554443
No 282
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=36.74 E-value=18 Score=29.10 Aligned_cols=37 Identities=27% Similarity=0.240 Sum_probs=23.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+||+++.+...|+.. -...+++.|.+ .|++|.++.-.
T Consensus 8 ~kIl~~~~~~~Gh~~-p~~~la~~L~~-~G~~V~~~~~~ 44 (430)
T 2iyf_A 8 AHIAMFSIAAHGHVN-PSLEVIRELVA-RGHRVTYAIPP 44 (430)
T ss_dssp CEEEEECCSCHHHHG-GGHHHHHHHHH-TTCEEEEEECG
T ss_pred ceEEEEeCCCCcccc-chHHHHHHHHH-CCCeEEEEeCH
Confidence 488886433346654 34566677777 79999887644
No 283
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=36.41 E-value=36 Score=25.37 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=22.8
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
.+||.|| ..|+ +...++..+.+ .|.+|.+++..
T Consensus 19 ~~kIgiI---G~G~---mG~alA~~L~~-~G~~V~~~~r~ 51 (245)
T 3dtt_A 19 GMKIAVL---GTGT---VGRTMAGALAD-LGHEVTIGTRD 51 (245)
T ss_dssp CCEEEEE---CCSH---HHHHHHHHHHH-TTCEEEEEESC
T ss_pred CCeEEEE---CCCH---HHHHHHHHHHH-CCCEEEEEeCC
Confidence 3467776 3454 66677777777 78888888764
No 284
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=36.40 E-value=73 Score=23.72 Aligned_cols=25 Identities=4% Similarity=0.036 Sum_probs=17.4
Q ss_pred hhhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 67 HQLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
+.+.++|.||+.+|... ++.+++.+
T Consensus 64 ~~~~~~Dvvi~av~~~~------~~~v~~~l 88 (266)
T 3d1l_A 64 EVNPYAKLYIVSLKDSA------FAELLQGI 88 (266)
T ss_dssp GSCSCCSEEEECCCHHH------HHHHHHHH
T ss_pred HHhcCCCEEEEecCHHH------HHHHHHHH
Confidence 33578999999999862 35555554
No 285
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=36.33 E-value=27 Score=27.58 Aligned_cols=35 Identities=14% Similarity=-0.083 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||++|+| +|-|..+...+++.|.+ .|.+|..++-.
T Consensus 23 M~~~vlV-----tGatG~iG~~l~~~L~~-~g~~V~~~~r~ 57 (375)
T 1t2a_A 23 MRNVALI-----TGITGQDGSYLAEFLLE-KGYEVHGIVRR 57 (375)
T ss_dssp -CCEEEE-----ETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred cCcEEEE-----ECCCchHHHHHHHHHHH-CCCEEEEEECC
Confidence 5556655 34455577777777777 78888776643
No 286
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=36.28 E-value=28 Score=26.81 Aligned_cols=35 Identities=20% Similarity=-0.071 Sum_probs=22.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
+|++||+--..+....+++.+.+.+++ .|+++.+.
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~-~g~~v~~~ 40 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCD-QGYEVIVE 40 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHH-TTCEEEEE
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEe
Confidence 578887743345667788899999998 89887654
No 287
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}
Probab=36.16 E-value=11 Score=28.41 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
||++|+| +|-|..+...+++.|.+ .|.+|..++-
T Consensus 1 M~~~ilV-----tGatG~iG~~l~~~L~~-~g~~V~~~~r 34 (267)
T 3ay3_A 1 MLNRLLV-----TGAAGGVGSAIRPHLGT-LAHEVRLSDI 34 (267)
T ss_dssp CEEEEEE-----ESTTSHHHHHHGGGGGG-TEEEEEECCS
T ss_pred CCceEEE-----ECCCCHHHHHHHHHHHh-CCCEEEEEeC
Confidence 6656665 35555677888888887 7876665543
No 288
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=35.96 E-value=73 Score=27.25 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=20.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
.+|+||-+- .++|..+++++ ++ .|+.++++...
T Consensus 8 ~~IlilD~G-s~~~~~I~r~l----re-~Gv~~eiv~~~ 40 (556)
T 3uow_A 8 DKILVLNFG-SQYFHLIVKRL----NN-IKIFSETKDYG 40 (556)
T ss_dssp CEEEEEESS-CTTHHHHHHHH----HH-TTCCEEEEETT
T ss_pred CEEEEEECC-CccHHHHHHHH----HH-CCCeEEEEECC
Confidence 368887532 45677666655 44 57788887653
No 289
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=35.92 E-value=1.3e+02 Score=23.58 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=43.0
Q ss_pred ceEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccCCC-c---HHHHhhcCCCCCCCCCCcCChhhhccCCeeEE
Q 028917 3 TKIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPETL-S---SVILQKMKAPPKTNDVPVIRPHQLKEADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~ 77 (202)
+||+|+.-.+. +.|+..-..+..... ..++++++++.+.. + .+-+..-++ +++ ..+..++|++|+
T Consensus 48 lkI~ILnlmp~k~~te~qf~rlL~~~~--~qv~v~~~~~~~~~~~~~~~~hl~~~y~-----~f~---~~~~~~~DglII 117 (312)
T 2h2w_A 48 LEILILNLMPDKIKTEIQLLRLLGNTP--LQVNVTLLYTETHKPKHTPIEHILKFYT-----TFS---AVKDRKFDGFII 117 (312)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHHHSSS--SCEEEEEECCSCCCCCSSCHHHHHHHCB-----CGG---GTTTCCEEEEEE
T ss_pred ceEEEEeCCCCcCchHHHHHHHhcCCC--CcEEEEEEEccCCCCCCccHHHHhhccC-----Ccc---cccccCcCEEEE
Confidence 48999998664 677644333333222 34566667765421 1 111111000 011 113467898876
Q ss_pred -eccccC---Ccch--HHHHHHHHhhh
Q 028917 78 -GFPSRF---GVMA--AQCKAFFDATY 98 (202)
Q Consensus 78 -gsP~y~---g~~~--~~~k~fld~~~ 98 (202)
|+|+-. ..+| ..++.++++..
T Consensus 118 TGsP~~~~~~ed~~yw~el~~li~~~~ 144 (312)
T 2h2w_A 118 TGAPVELLPFEEVDYWEELTEIMEWSR 144 (312)
T ss_dssp CCCSCTTSCGGGSTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCchHHHHHHHHHHHH
Confidence 588522 2222 44667777763
No 290
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=35.79 E-value=70 Score=21.05 Aligned_cols=34 Identities=9% Similarity=-0.111 Sum_probs=21.7
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+.||+.++-.+-+-|..+ |++ .|++++.+|+.+.
T Consensus 6 i~iY~~p~C~~c~ka~~~---L~~-~gi~~~~~di~~~ 39 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAKKW---LIE-NNIEYTNRLIVDD 39 (120)
T ss_dssp CEEEECTTCHHHHHHHHH---HHH-TTCCCEEEETTTT
T ss_pred EEEEECCCChHHHHHHHH---HHH-cCCceEEEecccC
Confidence 456877764444444333 344 6889999999763
No 291
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=35.50 E-value=77 Score=21.22 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=22.3
Q ss_pred CceEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 2 ATKIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|++.+|++|=|. |-++.+- .+.+.+++ +.++.+++
T Consensus 1 mK~tLILfGKP~C~vCe~~s-~~l~~led----eY~ilrVN 36 (124)
T 2g2q_A 1 MKNVLIIFGKPYCSICENVS-DAVEELKS----EYDILHVD 36 (124)
T ss_dssp CCEEEEEEECTTCHHHHHHH-HHHHTTTT----TEEEEEEE
T ss_pred CCceEEEeCCCccHHHHHHH-HHHHHhhc----cccEEEEE
Confidence 458999999986 5555444 44466665 45665554
No 292
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=35.34 E-value=28 Score=26.98 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|+++|+|. |-|-.+...+++.|.+ .|.+|..++-
T Consensus 1 M~~~vlVt-----GatG~iG~~l~~~L~~-~g~~V~~~~r 34 (348)
T 1ek6_A 1 MAEKVLVT-----GGAGYIGSHTVLELLE-AGYLPVVIDN 34 (348)
T ss_dssp CCSEEEEE-----TTTSHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred CCCEEEEE-----CCCCHHHHHHHHHHHH-CCCEEEEEec
Confidence 76666663 4445567777777777 7888887754
No 293
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=35.18 E-value=1.9e+02 Score=23.89 Aligned_cols=80 Identities=8% Similarity=0.142 Sum_probs=40.7
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCC-cCChhh-hc---cCCeeEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVP-VIRPHQ-LK---EADGFLF 77 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-l~---~ad~ii~ 77 (202)
+||.|| ..|+ +...++..+.+ .|.+|.+++.............. . .... ....++ +. ++|.||+
T Consensus 6 ~~IgvI---G~G~---mG~~lA~~L~~-~G~~V~v~dr~~~~~~~l~~~~~--~--~gi~~~~s~~e~v~~l~~aDvVil 74 (474)
T 2iz1_A 6 ANFGVV---GMAV---MGKNLALNVES-RGYTVAIYNRTTSKTEEVFKEHQ--D--KNLVFTKTLEEFVGSLEKPRRIML 74 (474)
T ss_dssp BSEEEE---CCSH---HHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHTT--T--SCEEECSSHHHHHHTBCSSCEEEE
T ss_pred CcEEEE---eeHH---HHHHHHHHHHh-CCCEEEEEcCCHHHHHHHHHhCc--C--CCeEEeCCHHHHHhhccCCCEEEE
Confidence 467776 2443 55556666666 68888877653211111111100 0 0000 011222 23 4999999
Q ss_pred eccccCCcchHHHHHHHHhhh
Q 028917 78 GFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~ 98 (202)
..|.. ..++..++.+.
T Consensus 75 avp~~-----~~v~~vl~~l~ 90 (474)
T 2iz1_A 75 MVQAG-----AATDATIKSLL 90 (474)
T ss_dssp CCCTT-----HHHHHHHHHHG
T ss_pred EccCc-----hHHHHHHHHHH
Confidence 99974 24666776663
No 294
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=35.17 E-value=42 Score=26.45 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=24.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||+|+.++ .++..+++.+++ .|+++..++...
T Consensus 2 ~~Ililg~g------~~~~~~~~a~~~-~G~~v~~~~~~~ 34 (365)
T 2z04_A 2 LTVGILGGG------QLGWMTILEGRK-LGFKFHVLEDKE 34 (365)
T ss_dssp CEEEEECCS------HHHHHHHHHHGG-GTCEEEEECSSS
T ss_pred CEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 489888533 567788888888 899888877644
No 295
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=34.97 E-value=53 Score=23.21 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=22.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEAT 36 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~ 36 (202)
|.++|.||.+|.+- ..+++.+++.+++ .|++++
T Consensus 1 ~~~~V~Iimgs~SD--~~v~~~a~~~l~~-~gi~~e 33 (159)
T 3rg8_A 1 MRPLVIILMGSSSD--MGHAEKIASELKT-FGIEYA 33 (159)
T ss_dssp -CCEEEEEESSGGG--HHHHHHHHHHHHH-TTCEEE
T ss_pred CCCeEEEEECcHHH--HHHHHHHHHHHHH-cCCCEE
Confidence 66789999888532 3356677777777 777654
No 296
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=34.92 E-value=1.4e+02 Score=22.25 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=26.3
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
+|.+|..+. +.....+.+.+.+.+++ .|.++.++.
T Consensus 6 ~I~~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~ 41 (305)
T 3g1w_A 6 TYMMITFQSGMDYWKRCLKGFEDAAQA-LNVTVEYRG 41 (305)
T ss_dssp EEEEEESSTTSTHHHHHHHHHHHHHHH-HTCEEEEEE
T ss_pred eEEEEEccCCChHHHHHHHHHHHHHHH-cCCEEEEeC
Confidence 466666554 56678899999999998 898887744
No 297
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.76 E-value=1.4e+02 Score=22.10 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=28.1
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+++...
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 48 (293)
T 3l6u_A 10 IVGFTIVNDKHEFAQRLINAFKAEAKA-NKYEALVATSQN 48 (293)
T ss_dssp EEEEEESCSCSHHHHHHHHHHHHHHHH-TTCEEEEEECSS
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHH-cCCEEEEECCCC
Confidence 466666544 34567889999999999 899888877653
No 298
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=34.42 E-value=16 Score=26.84 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=35.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gsP~ 81 (202)
+||.|| | .|+ +...++..+.+ .|.++.+++-.... ....... +... ...+.+.++|.||+.+|.
T Consensus 29 ~~I~ii-G--~G~---~G~~la~~l~~-~g~~V~~~~r~~~~-~~~~~~~-------g~~~~~~~~~~~~~DvVi~av~~ 93 (215)
T 2vns_A 29 PKVGIL-G--SGD---FARSLATRLVG-SGFKVVVGSRNPKR-TARLFPS-------AAQVTFQEEAVSSPEVIFVAVFR 93 (215)
T ss_dssp CCEEEE-C--CSH---HHHHHHHHHHH-TTCCEEEEESSHHH-HHHHSBT-------TSEEEEHHHHTTSCSEEEECSCG
T ss_pred CEEEEE-c--cCH---HHHHHHHHHHH-CCCEEEEEeCCHHH-HHHHHHc-------CCceecHHHHHhCCCEEEECCCh
Confidence 367666 2 454 55666777766 68788777643210 0001000 0000 122446789999999996
Q ss_pred c
Q 028917 82 R 82 (202)
Q Consensus 82 y 82 (202)
.
T Consensus 94 ~ 94 (215)
T 2vns_A 94 E 94 (215)
T ss_dssp G
T ss_pred H
Confidence 4
No 299
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=34.35 E-value=94 Score=21.04 Aligned_cols=74 Identities=12% Similarity=-0.066 Sum_probs=38.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC-cHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL-SSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
||.+|+|+.++. ..+-+++.+..-+.+ ...+..+++.... +....+. +. ...+.+.+ |++|+-+
T Consensus 4 M~i~iiivsHG~--~A~gl~~~~~~i~G~--~~~i~ai~~~~~~~~~~~~~~---------i~-~~i~~~~~-~gvliLt 68 (142)
T 3bed_A 4 MXPKLILMSHGR--MAEETLASTQMIVGE--LADAAIVSMTAEDGLSGTQAK---------LA-AILKEAGN-VPTLVLA 68 (142)
T ss_dssp CCSEEEEEEETT--HHHHHHHHHHHHHCT--TCCCEEEEECTTTHHHHHHHH---------HH-HHHHHHCS-CCEEEEE
T ss_pred CcccEEEEcChH--HHHHHHHHHHHHcCC--CCCEEEEEecCCCCHHHHHHH---------HH-HHHHhcCC-CCEEEEE
Confidence 435778776542 223333333333332 1356777775432 2211110 00 12455666 8999999
Q ss_pred cccCCcchHH
Q 028917 80 PSRFGVMAAQ 89 (202)
Q Consensus 80 P~y~g~~~~~ 89 (202)
=.|.|++...
T Consensus 69 Dl~GGSp~n~ 78 (142)
T 3bed_A 69 DLXGGTPCNV 78 (142)
T ss_dssp SSTTSHHHHH
T ss_pred ECCCCHHHHH
Confidence 9988886554
No 300
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=34.24 E-value=18 Score=27.62 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=25.2
Q ss_pred CCceEEEEEecCCCh--HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGH--VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~--T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|| ||+|+++..... ...-+..+++.+++ .|+++.+++..+
T Consensus 1 mm-~i~il~~~~~~~~~~~~s~~~l~~a~~~-~G~~v~~~d~~~ 42 (316)
T 1gsa_A 1 MI-KLGIVMDPIANINIKKDSSFAMLLEAQR-RGYELHYMEMGD 42 (316)
T ss_dssp CC-EEEEECSCGGGCCTTTCHHHHHHHHHHH-TTCEEEEECGGG
T ss_pred Cc-eEEEEeCcHHhCCcCCChHHHHHHHHHH-CCCEEEEEchhH
Confidence 54 899998653210 01123456777777 899998888754
No 301
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=34.20 E-value=67 Score=28.54 Aligned_cols=97 Identities=5% Similarity=-0.089 Sum_probs=51.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhh--hccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQ--LKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~ad~ii~gsP 80 (202)
+||+|+.+ .|....=+....+.++. +|++++++....... .....-... .+ ....+ ..++|+||+..-
T Consensus 535 rkVaILl~--dGfe~~El~~p~dvL~~-AG~~V~ivS~~gg~V---~ss~G~~v~-~d---~~l~~v~~~~yDaViVPGG 604 (715)
T 1sy7_A 535 RRVAIIIA--DGYDNVAYDAAYAAISA-NQAIPLVIGPRRSKV---TAANGSTVQ-PH---HHLEGFRSTMVDAIFIPGG 604 (715)
T ss_dssp CEEEEECC--TTBCHHHHHHHHHHHHH-TTCEEEEEESCSSCE---EBTTSCEEC-CS---EETTTCCGGGSSEEEECCC
T ss_pred CEEEEEEc--CCCCHHHHHHHHHHHHh-cCCEEEEEECCCCce---ecCCCceEe-cc---cccccCCcccCCEEEEcCC
Confidence 47887764 45544444567777777 799999887653100 000000000 00 01122 357899988642
Q ss_pred c---cCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 81 S---RFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 81 ~---y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
. +.-...+.+..|+.+.. -.||+++.+++
T Consensus 605 ~~~~~~l~~~~~l~~~Lr~~~-------~~gK~IaAIC~ 636 (715)
T 1sy7_A 605 AKAAETLSKNGRALHWIREAF-------GHLKAIGATGE 636 (715)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-------HTTCEEEEETT
T ss_pred cccHhhhccCHHHHHHHHHHH-------hCCCEEEEECH
Confidence 1 11122345566666553 26888877764
No 302
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=34.15 E-value=34 Score=26.68 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
++++|| |.+..+.+.++..+.. .|+.|++.+-... .+.+.+.+||.||-++|
T Consensus 161 k~vvVv-----Grs~iVG~p~A~lL~~-~gAtVtv~h~~t~--------------------~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 161 KDAVII-----GASNIVGRPMATMLLN-AGATVSVCHIKTK--------------------DLSLYTRQADLIIVAAG 212 (285)
T ss_dssp CEEEEE-----CCCTTTHHHHHHHHHH-TTCEEEEECTTCS--------------------CHHHHHTTCSEEEECSS
T ss_pred CEEEEE-----CCCchHHHHHHHHHHH-CCCeEEEEeCCch--------------------hHHHHhhcCCEEEECCC
No 303
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=33.99 E-value=43 Score=25.35 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=26.4
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+||.+|+++...++..-.+.+.+.+++ .|+++....+.
T Consensus 134 ~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~~~ 171 (295)
T 3lft_A 134 KTIGALYSSSEDNSKTQVEEFKAYAEK-AGLTVETFAVP 171 (295)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEEES
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 478888887554455566778888888 78876654443
No 304
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=33.98 E-value=24 Score=26.57 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|.|+|+| +|-|-.+...+++.|.+ .|.+|..++-
T Consensus 4 M~m~ilV-----tGatG~iG~~l~~~L~~-~g~~V~~~~r 37 (287)
T 3sc6_A 4 MKERVII-----TGANGQLGKQLQEELNP-EEYDIYPFDK 37 (287)
T ss_dssp -CEEEEE-----ESTTSHHHHHHHHHSCT-TTEEEEEECT
T ss_pred ceeEEEE-----ECCCCHHHHHHHHHHHh-CCCEEEEecc
Confidence 4346776 35556688888999988 7888777653
No 305
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=33.96 E-value=35 Score=25.73 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=28.9
Q ss_pred ceEEEEEec-CCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYS-LYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S-~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|||.++.+| ..|.+..|-+.|.+-|++ .|.+ ++|+.
T Consensus 20 mkiali~~~sqa~kN~~lKe~i~~~L~~-~G~e--V~D~G 56 (231)
T 3c5y_A 20 MKIALIIENSQAAKNAVVHEALTTVAEP-LGHK--VFNYG 56 (231)
T ss_dssp CEEEECCCGGGGGGHHHHHHHHHHHHGG-GTCE--EEECC
T ss_pred ceEEEEecCCHhhhHHHHHHHHHHHHHH-CCCE--EEEeC
Confidence 589888865 478889999999999999 8874 55663
No 306
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=33.92 E-value=83 Score=22.67 Aligned_cols=30 Identities=27% Similarity=0.332 Sum_probs=17.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
++|+|+-+ .||-..+.+ .+++ .|+++.+++
T Consensus 21 ~~I~ii~~--~~~~~~~~~----~l~~-~g~~~~~~~ 50 (208)
T 2iss_D 21 MKIGVLGV--QGDVREHVE----ALHK-LGVETLIVK 50 (208)
T ss_dssp CEEEEECS--SSCHHHHHH----HHHH-TTCEEEEEC
T ss_pred cEEEEEEC--CCchHHHHH----HHHH-CCCEEEEeC
Confidence 47888854 455444444 3444 577766653
No 307
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=33.89 E-value=35 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCh---HHHHHHHHHHHhhccCCce
Q 028917 3 TKIYIVYYSLYGH---VETMAREVQRGANSVLGVE 34 (202)
Q Consensus 3 ~kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~ 34 (202)
++|.|+.+|..++ -...|+.+.+.+.+ .|+.
T Consensus 14 ~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~-~G~~ 47 (215)
T 2a33_A 14 RRICVFCGSSQGKKSSYQDAAVDLGNELVS-RNID 47 (215)
T ss_dssp SEEEEECCSSCCSSHHHHHHHHHHHHHHHH-TTCE
T ss_pred CeEEEEECCCCCCchHHHHHHHHHHHHHHH-CCCE
Confidence 3677776888654 24688888888887 6643
No 308
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=33.87 E-value=35 Score=27.12 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCceEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 1 MATKIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 1 M~~kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
|++||+|. +..| ||.. =+-++++.+++ .|.+|.++-
T Consensus 1 M~~~i~i~-~GGTgGHi~-palala~~L~~-~g~~V~~vg 37 (365)
T 3s2u_A 1 MKGNVLIM-AGGTGGHVF-PALACAREFQA-RGYAVHWLG 37 (365)
T ss_dssp --CEEEEE-CCSSHHHHH-HHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCcEEEE-cCCCHHHHH-HHHHHHHHHHh-CCCEEEEEE
Confidence 77778764 4445 5643 23457777877 788887764
No 309
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=33.75 E-value=26 Score=28.76 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=23.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
||+||+|+.. | .++..+++.+++ .|+++..++-
T Consensus 5 ~~~kiLI~g~---g---~~a~~i~~aa~~-~G~~~v~v~~ 37 (446)
T 3ouz_A 5 EIKSILIANR---G---EIALRALRTIKE-MGKKAICVYS 37 (446)
T ss_dssp CCCEEEECCC---H---HHHHHHHHHHHH-TTCEEEEEEE
T ss_pred ccceEEEECC---C---HHHHHHHHHHHH-cCCEEEEEEc
Confidence 4556777532 2 277788888888 8998877754
No 310
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=33.60 E-value=37 Score=26.83 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=21.9
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+||+|+-++ .+...++..+++ .|+++.++|-..
T Consensus 1 MK~I~ilGgg------~~g~~~~~~Ak~-~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGK------LQGFEAAYLSKK-AGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCS------HHHHHHHHHHHH-TTCEEEEEESCT
T ss_pred CCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 4477777432 234455666777 899998887544
No 311
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=33.57 E-value=41 Score=26.23 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=28.5
Q ss_pred CceEEEEEec--C-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYS--L-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S--~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
||||+++..+ + .|..+..+..+++.+ .|.+|.++....
T Consensus 4 ~mkIl~v~~~~~p~~gG~~~~~~~l~~~L---~g~~v~v~~~~~ 44 (394)
T 3okp_A 4 SRKTLVVTNDFPPRIGGIQSYLRDFIATQ---DPESIVVFASTQ 44 (394)
T ss_dssp CCCEEEEESCCTTSCSHHHHHHHHHHTTS---CGGGEEEEEECS
T ss_pred CceEEEEeCccCCccchHHHHHHHHHHHh---cCCeEEEEECCC
Confidence 4589988753 3 477888888888888 367888887655
No 312
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=33.49 E-value=60 Score=22.83 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=16.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
||+|+-. .||-..+ .+.+++ .|+++.+++
T Consensus 2 ~i~vl~~--~g~~~~~----~~~l~~-~G~~~~~~~ 30 (186)
T 2ywj_A 2 IIGVLAI--QGDVEEH----EEAIKK-AGYEAKKVK 30 (186)
T ss_dssp EEEEECS--SSCCHHH----HHHHHH-TTSEEEEEC
T ss_pred EEEEEec--CcchHHH----HHHHHH-CCCEEEEEC
Confidence 7888842 3443323 355555 677776653
No 313
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=33.40 E-value=2.4e+02 Score=24.56 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=31.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEE-ecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLF-GFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~-gsP~y 82 (202)
+|+||- ...++|..+++.+. + .|++++++...+ ..++.++|+||| +.|--
T Consensus 448 ~IlviD-~gdsf~~~l~~~l~----~-~G~~v~Vv~~d~-----------------------~~~~~~~DgIIlsGGPg~ 498 (645)
T 3r75_A 448 RALIVD-AEDHFTAMIAQQLS----S-LGLATEVCGVHD-----------------------AVDLARYDVVVMGPGPGD 498 (645)
T ss_dssp EEEEEE-SSCTHHHHHHHHHH----H-TTCEEEEEETTC-----------------------CCCGGGCSEEEECCCSSC
T ss_pred EEEEEE-CCccHHHHHHHHHH----H-CCCEEEEEECCC-----------------------cccccCCCEEEECCCCCC
Confidence 566664 33467776666654 4 577888876543 123568899999 55543
No 314
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=33.28 E-value=56 Score=21.29 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+++|++.+. .+.++..+++...+-++. .|.++.++.+.+
T Consensus 1 m~~~ILv~~D-~s~~s~~al~~a~~la~~-~~a~l~ll~v~~ 40 (137)
T 2z08_A 1 MFKTILLAYD-GSEHARRAAEVAKAEAEA-HGARLIVVHAYE 40 (137)
T ss_dssp CCSEEEEECC-SSHHHHHHHHHHHHHHHH-HTCEEEEEEEEC
T ss_pred CcceEEEEeC-CCHHHHHHHHHHHHHHhh-cCCEEEEEEEec
Confidence 7778887663 233455666666666655 577888888754
No 315
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=33.11 E-value=37 Score=24.40 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=38.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc--CChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV--IRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ad~ii~gsP 80 (202)
++|+| +|-|-.+...+++.|.+ .|.+|..+.-.............. .. -|+.+ ...+.+.+.|.||....
T Consensus 5 ~~ilI-----tGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~-~~-~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 5 KKIVL-----IGASGFVGSALLNEALN-RGFEVTAVVRHPEKIKIENEHLKV-KK-ADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp CEEEE-----ETCCHHHHHHHHHHHHT-TTCEEEEECSCGGGCCCCCTTEEE-EC-CCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CEEEE-----EcCCchHHHHHHHHHHH-CCCEEEEEEcCcccchhccCceEE-EE-ecCCCHHHHHHHhcCCCEEEEeCc
Confidence 46766 36666788888888888 788877765432100000000000 00 12211 12345678999998765
Q ss_pred cc
Q 028917 81 SR 82 (202)
Q Consensus 81 ~y 82 (202)
..
T Consensus 77 ~~ 78 (227)
T 3dhn_A 77 PG 78 (227)
T ss_dssp C-
T ss_pred CC
Confidence 44
No 316
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=33.10 E-value=25 Score=27.81 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=26.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|||+++..+..|+...++ .+++.+++ .|++|.++.-
T Consensus 2 MrIl~~~~~~~gh~~~~~-~la~~L~~-~GheV~v~~~ 37 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMV-PLCWALQA-SGHEVLIAAP 37 (391)
T ss_dssp CEEEEECCSCHHHHHTTH-HHHHHHHH-TTCEEEEEEC
T ss_pred cEEEEEcCCCcchhhhHH-HHHHHHHH-CCCEEEEecC
Confidence 489888766667765544 46777887 8999988764
No 317
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=33.02 E-value=39 Score=27.11 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=27.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+++.....|+...++. ++++|++ .|++|.++--.
T Consensus 2 rIli~~~gt~Ghv~p~~~-La~~L~~-~Gh~V~v~~~~ 37 (404)
T 3h4t_A 2 GVLITGCGSRGDTEPLVA-LAARLRE-LGADARMCLPP 37 (404)
T ss_dssp CEEEEEESSHHHHHHHHH-HHHHHHH-TTCCEEEEECG
T ss_pred eEEEEeCCCCccHHHHHH-HHHHHHH-CCCeEEEEeCH
Confidence 888876555788877764 7788888 89999987543
No 318
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=32.88 E-value=1.8e+02 Score=23.48 Aligned_cols=59 Identities=15% Similarity=0.053 Sum_probs=32.0
Q ss_pred ccccCCc--chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 79 FPSRFGV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 79 sP~y~g~--~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
.|++|+. ..-+.+.++|-+.-.-..+.++|+++++++-. . . ....++...+...|+.+.
T Consensus 149 vPVINa~~~~~HPtQaLaDl~Ti~E~~G~l~glkva~vGD~--~---n-nva~Sl~~~~~~lG~~v~ 209 (365)
T 4amu_A 149 VPVWNGLTDDEHPTQIIADFMTMKEKFGNLKNKKIVFIGDY--K---N-NVGVSTMIGAAFNGMHVV 209 (365)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHHHHHHSSCTTCEEEEESST--T---S-HHHHHHHHHHHHTTCEEE
T ss_pred CCEEeCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCC--C---c-chHHHHHHHHHHcCCEEE
Confidence 3666642 11234555555421111246889988765421 1 1 346667777777788765
No 319
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=32.88 E-value=47 Score=25.23 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=26.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+||.+|+++...++..-.+.+.+.+++ .|+++....+
T Consensus 141 ~~I~~i~~~~~~~~~~r~~g~~~al~~-~gi~~~~~~~ 177 (302)
T 2qh8_A 141 KSIGVVYNPGEANAVSLMELLKLSAAK-HGIKLVEATA 177 (302)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHHH-cCCEEEEEec
Confidence 478888876554456666778888888 7887665544
No 320
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=32.78 E-value=1.1e+02 Score=20.25 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=24.8
Q ss_pred eEEEEEe-cCCCh-HHHHHHHHHHHhhccCCceE-EEEEccC
Q 028917 4 KIYIVYY-SLYGH-VETMAREVQRGANSVLGVEA-TLWQVPE 42 (202)
Q Consensus 4 kiliiy~-S~~G~-T~~la~~i~~~~~~~~g~~v-~~~~l~~ 42 (202)
|++|+.. +|+|+ ...-+-.++..+.+ .|.++ .++-..|
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~-~g~~v~~vff~~d 42 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALE-KGHEIFRVFFYHD 42 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHH-TTCEEEEEEECGG
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCeeCEEEEech
Confidence 6766664 45763 34455566666666 78899 7777766
No 321
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=32.74 E-value=30 Score=26.43 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=22.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
|.++|+| +|-|-.+...+++.|.+ .|.+|..++
T Consensus 1 m~~~vlV-----tGatG~iG~~l~~~L~~-~g~~V~~~~ 33 (315)
T 2ydy_A 1 MNRRVLV-----TGATGLLGRAVHKEFQQ-NNWHAVGCG 33 (315)
T ss_dssp -CCEEEE-----ETTTSHHHHHHHHHHHT-TTCEEEEEC
T ss_pred CCCeEEE-----ECCCcHHHHHHHHHHHh-CCCeEEEEc
Confidence 6667766 35555677788888877 788877765
No 322
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=32.67 E-value=67 Score=23.79 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 13 YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 13 ~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.....+++.|++.+++ .|++|++..+.
T Consensus 137 ~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 164 (259)
T 3pam_A 137 SLEEEKVALAFQSNLSR-LGIHAEIRTVD 164 (259)
T ss_dssp SHHHHHHHHHHHHHHHT-TTCEEEEEECC
T ss_pred CchHHHHHHHHHHHHHH-cCCEEEEEecC
Confidence 35567899999999999 89999887654
No 323
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*
Probab=32.37 E-value=36 Score=25.46 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=25.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|++|.++| +|-|.-|...+++.|.+ .|.+|.+.+...
T Consensus 1 m~~k~vlV----TGasg~IG~~la~~L~~-~G~~V~~~~r~~ 37 (267)
T 3rft_A 1 MAMKRLLV----TGAAGQLGRVMRERLAP-MAEILRLADLSP 37 (267)
T ss_dssp CCEEEEEE----ESTTSHHHHHHHHHTGG-GEEEEEEEESSC
T ss_pred CCCCEEEE----ECCCCHHHHHHHHHHHh-cCCEEEEEecCC
Confidence 66666666 44455577788888887 788888777654
No 324
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=32.35 E-value=41 Score=23.58 Aligned_cols=35 Identities=29% Similarity=0.222 Sum_probs=22.6
Q ss_pred CC-ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MA-TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~-~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+ |+|+|. |-|..+...+++.+.+ .|.+|..+.-.
T Consensus 1 M~~~~ilVt-----GatG~iG~~l~~~l~~-~g~~V~~~~r~ 36 (206)
T 1hdo_A 1 MAVKKIAIF-----GATGQTGLTTLAQAVQ-AGYEVTVLVRD 36 (206)
T ss_dssp CCCCEEEEE-----STTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred CCCCEEEEE-----cCCcHHHHHHHHHHHH-CCCeEEEEEeC
Confidence 54 355553 4445577777777777 78888776643
No 325
>1f35_A Olfactory marker protein; beta, structural genomics, PSI, protein structure initiative northeast structural genomics consortium, NESG, signaling P; 2.30A {Mus musculus} SCOP: b.94.1.1 PDB: 1job_A 1jod_A 1jyt_A 1zri_A
Probab=32.29 E-value=31 Score=23.60 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.1
Q ss_pred HHHHHHHhHHHHHHHHH
Q 028917 183 LQQAFHQGKYVAEIAKK 199 (202)
Q Consensus 183 ~~~a~~~g~~l~~~~~~ 199 (202)
.+.|.|||++|++.++-
T Consensus 118 EADaqEFGERiaeLAki 134 (162)
T 1f35_A 118 EADALEFGERLSDLAKI 134 (162)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45689999999999864
No 326
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=32.28 E-value=1.8e+02 Score=22.73 Aligned_cols=60 Identities=12% Similarity=0.010 Sum_probs=35.7
Q ss_pred ccccCCc---chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHc-CcEEe
Q 028917 79 FPSRFGV---MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHH-GMLFV 143 (202)
Q Consensus 79 sP~y~g~---~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~-g~~vv 143 (202)
.|++|+. ..-+.+.++|-+.-.-..+.++|+++++++-.- ++ .+..++...+... |+.+.
T Consensus 119 vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~glkva~vGD~~--~~---rva~Sl~~~~~~~~G~~v~ 182 (306)
T 4ekn_B 119 VPIINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLK--YG---RTVHSLVYALSLFENVEMY 182 (306)
T ss_dssp SCEEESCSSSSCCHHHHHHHHHHHHHHHSCSTTCEEEEESCTT--TC---HHHHHHHHHHHTSSSCEEE
T ss_pred CCEEeCCCCCCcCcHHHHHHHHHHHHHhCCcCCCEEEEEcCCC--CC---cHHHHHHHHHHhcCCCEEE
Confidence 4788752 233456777754321112468999987764321 11 3567777778888 88765
No 327
>3eeq_A Putative cobalamin biosynthesis protein G homolog; structural genomics, unknown function, PSI-2, protein structure initiative; 2.30A {Sulfolobus solfataricus} SCOP: c.151.1.1 c.152.1.1
Probab=32.27 E-value=54 Score=26.17 Aligned_cols=54 Identities=13% Similarity=0.077 Sum_probs=34.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE-ccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ-VPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
++.||+.|..| ..+|+.+++.+.. .+.++..+. +.+ ...+.+.++|.+||...+
T Consensus 10 ~~Aiia~T~~G--~~lA~rl~~~l~~-~~~~~~~~~~~~~---------------------~~~~~f~~~d~iIfI~A~ 64 (336)
T 3eeq_A 10 GICIISASEDA--FSAGETIKEKLKS-FEIPVVHYRYKDA---------------------EIETIWKCYDAIVFVMAL 64 (336)
T ss_dssp CEEEEECSHHH--HHHHHHHHHHHHH-TTCCEEEEEGGGC---------------------CHHHHTTTCSEEEEESCH
T ss_pred ceEEEEEChHH--HHHHHHHHHhcCc-CCceEEecCCHHH---------------------HHHHHhcCCCeEEEEeCh
Confidence 67788766655 6788899888874 344443221 111 245677889999987654
No 328
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=32.10 E-value=59 Score=23.13 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATL 37 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~ 37 (202)
|.++|.||.+|.+- ..+++.+++.+++ .|+.+++
T Consensus 4 m~p~V~IimgS~SD--~~v~~~a~~~l~~-~gi~~ev 37 (166)
T 3oow_A 4 MSVQVGVIMGSKSD--WSTMKECCDILDN-LGIGYEC 37 (166)
T ss_dssp -CEEEEEEESSGGG--HHHHHHHHHHHHH-TTCEEEE
T ss_pred CCCeEEEEECcHHh--HHHHHHHHHHHHH-cCCCEEE
Confidence 55689999888532 3356677777777 6765443
No 329
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=31.94 E-value=37 Score=24.97 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|++|+++|.+...| |..++++.+.+ .|..|.+.+..
T Consensus 1 Ms~k~vlVTGas~G----IG~a~a~~l~~-~G~~V~~~~r~ 36 (235)
T 3l6e_A 1 MSLGHIIVTGAGSG----LGRALTIGLVE-RGHQVSMMGRR 36 (235)
T ss_dssp --CCEEEEESTTSH----HHHHHHHHHHH-TTCEEEEEESC
T ss_pred CCCCEEEEECCCCH----HHHHHHHHHHH-CCCEEEEEECC
Confidence 66677777655444 66666666666 78888776654
No 330
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=31.67 E-value=1.2e+02 Score=25.66 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=20.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
.+|+||-+ ..++|..+++.+ ++ .|+.++++..
T Consensus 11 ~~I~IlD~-g~~~~~~i~r~l----r~-~Gv~~~i~p~ 42 (527)
T 3tqi_A 11 HRILILDF-GSQYAQLIARRV----RE-IGVYCELMPC 42 (527)
T ss_dssp SEEEEEEC-SCTTHHHHHHHH----HH-HTCEEEEEET
T ss_pred CeEEEEEC-CCccHHHHHHHH----HH-CCCeEEEEEC
Confidence 37888853 245676555555 44 5777887754
No 331
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=31.62 E-value=53 Score=25.07 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=24.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEA 35 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v 35 (202)
|+.||+- +.++...+++.+.+.+++ .|+++
T Consensus 2 ki~ii~n-~~~~~~~~~~~l~~~l~~-~g~~v 31 (272)
T 2i2c_A 2 KYMITSK-GDEKSDLLRLNMIAGFGE-YDMEY 31 (272)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHHHTT-SSCEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHHHHHH-CCCEe
Confidence 7888776 667788899999999998 88776
No 332
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=31.52 E-value=1e+02 Score=21.20 Aligned_cols=74 Identities=7% Similarity=0.025 Sum_probs=41.8
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhh-ccCCceEEEEEccCCCcH--HHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGAN-SVLGVEATLWQVPETLSS--VILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~-~~~g~~v~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
++++++|.+ +|-|- +++.++..+. . .|..+..++..+.... ..... .... .....+.+.+.||+==
T Consensus 39 ~~~~l~G~~G~GKTt-L~~~i~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~llilDE 108 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTH-LAVATLKAIYEK-KGIRGYFFDTKDLIFRLKHLMDE-------GKDT-KFLKTVLNSPVLVLDD 108 (180)
T ss_dssp CEEEECCSSSSSHHH-HHHHHHHHHHHH-SCCCCCEEEHHHHHHHHHHHHHH-------TCCS-HHHHHHHTCSEEEEET
T ss_pred CEEEEECCCCCCHHH-HHHHHHHHHHHH-cCCeEEEEEHHHHHHHHHHHhcC-------chHH-HHHHHhcCCCEEEEeC
Confidence 467777765 78775 6667777765 4 5766666665442110 00000 0111 2356678899999998
Q ss_pred cccCCcch
Q 028917 80 PSRFGVMA 87 (202)
Q Consensus 80 P~y~g~~~ 87 (202)
|...+.-+
T Consensus 109 ~~~~~~~~ 116 (180)
T 3ec2_A 109 LGSERLSD 116 (180)
T ss_dssp CSSSCCCH
T ss_pred CCCCcCCH
Confidence 87554333
No 333
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=31.41 E-value=79 Score=26.22 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=27.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.+++.+.......+|+.|++.+++ .|+++++..+.
T Consensus 332 l~l~~~~~~~~~~~~a~~i~~~l~~-iGI~v~i~~~~ 367 (496)
T 3t66_A 332 FTVLTYGSRAELPLIAQVFQSNAKQ-IGIEVEIRQIE 367 (496)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHH-TTCEEEEEECS
T ss_pred EEEEecCCCccHHHHHHHHHHHHHh-cCCEEEEEEec
Confidence 4455544445567899999999999 89999987664
No 334
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=31.38 E-value=1.8e+02 Score=22.34 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=27.8
Q ss_pred eEEEEEecCC--ChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLY--GHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~--G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|.+++.+.. .....+.+.+.+.+++ .|.++.+.+..
T Consensus 5 ~Ig~i~p~~~~~~f~~~~~~g~~~~a~~-~g~~~~~~~~~ 43 (350)
T 3h75_A 5 SVVFLNPGNSTETFWVSYSQFMQAAARD-LGLDLRILYAE 43 (350)
T ss_dssp EEEEEECSCTTCHHHHHHHHHHHHHHHH-HTCEEEEEECT
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHH-cCCeEEEEECC
Confidence 5777775543 3567889999999998 89988887654
No 335
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.29 E-value=1e+02 Score=19.62 Aligned_cols=104 Identities=14% Similarity=0.084 Sum_probs=55.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
+|+|+.+|..-.| .+.+.+.++. .|..++.++-++.+.+ .+.+.++.|.+-|+..-+-.
T Consensus 2 nivivvfstdeet---lrkfkdiikk-ngfkvrtvrspqelkd-----------------sieelvkkynativvvvvdd 60 (134)
T 2l69_A 2 NIVIVVFSTDEET---LRKFKDIIKK-NGFKVRTVRSPQELKD-----------------SIEELVKKYNATIVVVVVDD 60 (134)
T ss_dssp CEEEEECCCCHHH---HHHHHHHHHH-TTCEEEEECSHHHHHH-----------------HHHHHTTCCCCEEEEEECSS
T ss_pred cEEEEEEeCCHHH---HHHHHHHHHh-cCceEEEecCHHHHHH-----------------HHHHHHHHhCCeEEEEEEcc
Confidence 7899988876544 3455666666 7888877664331110 12344566666665554433
Q ss_pred CcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 84 GVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 84 g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
-......-.|...+ |-.+.++ .+.. .+ ..+.++.......|+.+-
T Consensus 61 kewaekairfvksl----------gaqvlii-iydq---dq-nrleefsrevrrrgfevr 105 (134)
T 2l69_A 61 KEWAEKAIRFVKSL----------GAQVLII-IYDQ---DQ-NRLEEFSREVRRRGFEVR 105 (134)
T ss_dssp HHHHHHHHHHHHHH----------CCCCEEE-EECS---CH-HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHhc----------CCeEEEE-EEeC---ch-hHHHHHHHHHHhcCceEE
Confidence 22223333444433 2233333 2221 22 457777777777777654
No 336
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=31.12 E-value=97 Score=21.63 Aligned_cols=75 Identities=15% Similarity=0.156 Sum_probs=42.7
Q ss_pred ceEEEEEecC-----------CChH--HHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh
Q 028917 3 TKIYIVYYSL-----------YGHV--ETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL 69 (202)
Q Consensus 3 ~kiliiy~S~-----------~G~T--~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 69 (202)
+||+|+++=. +|++ +.+.+.+.+.+.+ .|++++++.-+. ..+.+. .+.+..
T Consensus 5 ~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~-~g~~v~~~QSN~--EgeLId-------------~Ih~a~ 68 (151)
T 3u80_A 5 TKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKD-LGLEVEVRQTDD--EAEMVR-------------WMHQAA 68 (151)
T ss_dssp EEEEEEECSCC------------CHHHHHHHHHHHHHHHH-TTEEEEEEECSC--HHHHHH-------------HHHHHH
T ss_pred CEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHH-cCCEEEEEecCC--HHHHHH-------------HHHHhh
Confidence 3799998742 4542 4556667777777 798888877643 111110 122334
Q ss_pred ccCCeeEEeccccCCcchHHHHHHH
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFF 94 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fl 94 (202)
.++|+||+=.--|. ..+-.+..-+
T Consensus 69 ~~~dgiiINpgA~T-HtSvAlrDAl 92 (151)
T 3u80_A 69 DEKTPVVMNPAAFT-HYSYALADAA 92 (151)
T ss_dssp HHTCCEEEECTTCC-SCCHHHHHHH
T ss_pred hcCcEEEECcchhh-hhhHHHHHHH
Confidence 56899988766664 2233455553
No 337
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=31.04 E-value=1e+02 Score=23.14 Aligned_cols=101 Identities=14% Similarity=0.032 Sum_probs=53.3
Q ss_pred CceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC-C-CcHHHHhhcCCCCCC---CCCCcCChhhhccCCee
Q 028917 2 ATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE-T-LSSVILQKMKAPPKT---NDVPVIRPHQLKEADGF 75 (202)
Q Consensus 2 ~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~-~-~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ad~i 75 (202)
|-++.++||++ .|.|..+.+.+..... .|-.|-++.-.. . ..........-.... .... ...+.+.++|.|
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~-di~~~~~~~dvV 94 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLR-DVAQEALGVAVI 94 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETTCCCC-----------CEEEEESSGG-GGHHHHTTCSEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHH-HHHHHhccCCEE
Confidence 34788889996 7999888888777765 577777776322 1 111110000000000 0001 133445678888
Q ss_pred EEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 76 LFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 76 i~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
++==-.++-. +..+++.+. . .|+++.+.+-
T Consensus 95 iIDEaQF~~~----v~el~~~l~------~-~gi~VI~~GL 124 (234)
T 2orv_A 95 GIDEGQFFPD----IVEFCEAMA------N-AGKTVIVAAL 124 (234)
T ss_dssp EESSGGGCTT----HHHHHHHHH------H-TTCEEEEECC
T ss_pred EEEchhhhhh----HHHHHHHHH------h-CCCEEEEEec
Confidence 8875555532 566665552 1 5676655443
No 338
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=31.03 E-value=42 Score=26.18 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
++++|| |....+.+.++..+.. .|+.|++.+-... .+.+.+.+||.||-++|
T Consensus 162 k~vvVI-----G~s~iVG~p~A~lL~~-~gAtVtv~hs~t~--------------------~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 162 AYAVVV-----GASNVVGKPVSQLLLN-AKATVTTCHRFTT--------------------DLKSHTTKADILIVAVG 213 (285)
T ss_dssp CEEEEE-----CCCTTTHHHHHHHHHH-TTCEEEEECTTCS--------------------SHHHHHTTCSEEEECCC
T ss_pred CEEEEE-----CCCchhHHHHHHHHHH-CCCeEEEEeCCch--------------------hHHHhcccCCEEEECCC
No 339
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=30.99 E-value=32 Score=28.12 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
||+||+|+.. | .++..+++.+++ .|+++..++-
T Consensus 1 m~k~ilI~g~---g---~~~~~~~~a~~~-~G~~vv~v~~ 33 (449)
T 2w70_A 1 MLDKIVIANR---G---EIALRILRACKE-LGIKTVAVHS 33 (449)
T ss_dssp CCSEEEECCC---H---HHHHHHHHHHHH-HTCEEEEEEE
T ss_pred CCceEEEeCC---c---HHHHHHHHHHHH-cCCeEEEEec
Confidence 8888888742 2 356677788887 7988877754
No 340
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=30.85 E-value=56 Score=23.49 Aligned_cols=137 Identities=10% Similarity=0.023 Sum_probs=58.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC---CCcHHHHhhcCCCCCCCCCC--cCCh-hhhccCCe
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE---TLSSVILQKMKAPPKTNDVP--VIRP-HQLKEADG 74 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~---~~~~~~~~~~~~~~~~~~~~--~~~~-~~l~~ad~ 74 (202)
|++||++......+ +.+.. .+.+.+.+ .|++|.++--.. ....+.++.-..... |... .... +.-.++|+
T Consensus 1 ~~k~IllgvTGs~a-a~k~~-~l~~~L~~-~g~~V~vv~T~~A~~fi~~~~l~~l~~~~~-d~~~~~~~~hi~l~~~aD~ 76 (181)
T 1g63_A 1 MYGKLLICATASIN-VININ-HYIVELKQ-HFDEVNILFSPSSKNFINTDVLKLFCDNLY-DEIKDPLLNHINIVENHEY 76 (181)
T ss_dssp CCCCEEEEECSCGG-GGGHH-HHHHHHTT-TSSCEEEEECGGGGGTSCGGGGGGTSSCEE-CTTTCTTCCHHHHHHTCSE
T ss_pred CCCEEEEEEECHHH-HHHHH-HHHHHHHH-CCCEEEEEEchhHHHHHHHHHHHHHhCCcc-cccCCCCCccccccccCCE
Confidence 78787665422222 23333 44555666 688888775432 111112211100011 1111 0111 22367998
Q ss_pred eEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 75 FLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 75 ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
+|++--+-+ .+.....-+-|.+..... .-.+|++.++-...........+.+++ ..|...|+.+++.
T Consensus 77 ~vIaPaTan-tlAKiA~GiaDnllt~~~--la~~~pvvlaPamn~~m~~~p~~~~Nl-~~L~~~G~~iv~p 143 (181)
T 1g63_A 77 ILVLPASAN-TINKIANGICDNLLTTVC--LTGYQKLFIFPNMNIRMWGNPFLQKNI-DLLKNNDVKVYSP 143 (181)
T ss_dssp EEEEEECHH-HHHHHHTTCCCSHHHHHH--HHTGGGEEEEECCCHHHHTCHHHHHHH-HHHHTTTCEECCC
T ss_pred EEEecCCHH-HHHHHHccccCcHHHHHH--HHcCCCEEEEeCCChhhcCCHHHHHHH-HHHHHCCCEEECC
Confidence 888765532 222111111111110000 014677766653221000112334444 4567789999864
No 341
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=30.81 E-value=45 Score=26.73 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=24.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+||+++-+...|+..-+. .+++.|.+ .|++|.++.-.
T Consensus 13 ~~Il~~~~~~~GHv~p~l-~la~~L~~-~Gh~V~~~~~~ 49 (424)
T 2iya_A 13 RHISFFNIPGHGHVNPSL-GIVQELVA-RGHRVSYAITD 49 (424)
T ss_dssp CEEEEECCSCHHHHHHHH-HHHHHHHH-TTCEEEEEECG
T ss_pred ceEEEEeCCCCcccchHH-HHHHHHHH-CCCeEEEEeCH
Confidence 378876433357876555 45566666 79999887644
No 342
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=30.75 E-value=1.2e+02 Score=20.51 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=25.1
Q ss_pred ceEEEEEec-CCCh-HHHHHHHHHHHhhccCCceE-EEEEccC
Q 028917 3 TKIYIVYYS-LYGH-VETMAREVQRGANSVLGVEA-TLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S-~~G~-T~~la~~i~~~~~~~~g~~v-~~~~l~~ 42 (202)
||++|+..+ |+|+ ...-+=.++..+-+ .|.+| .++-..|
T Consensus 13 ~~~~ivv~~~Pyg~~~a~~Al~~A~aala-~g~eV~~VFf~~D 54 (140)
T 2d1p_A 13 MRFAIVVTGPAYGTQQASSAFQFAQALIA-DGHELSSVFFYRE 54 (140)
T ss_dssp CEEEEEECSCSSSSSHHHHHHHHHHHHHH-TTCEEEEEEECGG
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHHHH-CCCccCEEEEech
Confidence 477776654 5764 34445555666555 68899 7777766
No 343
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=30.59 E-value=33 Score=26.94 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCCh--hhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRP--HQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~ad~ii~gsP 80 (202)
++++|| |....+.+.++..+.. .|+.|++.+-... .+. +.+.+||.||-++|
T Consensus 166 k~vvVI-----G~s~iVG~p~A~lL~~-~gAtVtv~~~~T~--------------------~l~l~~~~~~ADIVI~Avg 219 (300)
T 4a26_A 166 KRAVVL-----GRSNIVGAPVAALLMK-ENATVTIVHSGTS--------------------TEDMIDYLRTADIVIAAMG 219 (300)
T ss_dssp CEEEEE-----CCCTTTHHHHHHHHHH-TTCEEEEECTTSC--------------------HHHHHHHHHTCSEEEECSC
T ss_pred CEEEEE-----CCCchHHHHHHHHHHH-CCCeEEEEeCCCC--------------------CchhhhhhccCCEEEECCC
No 344
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=30.48 E-value=85 Score=25.97 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=26.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.+++.+.......+|+.|++.+++ .|+++++..+.
T Consensus 330 l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 365 (486)
T 3rqt_A 330 IKLITYDGRPELSKIAQVLQSDAKK-ANIEIDIKSVD 365 (486)
T ss_dssp EEEEECSSSTHHHHHHHHHHHHHHT-TTEEEEEEECS
T ss_pred EEEEecCCCccHHHHHHHHHHHHHh-cCCEEEEEEec
Confidence 3344434444567899999999999 89999987764
No 345
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=30.42 E-value=1.9e+02 Score=23.34 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=17.0
Q ss_pred CCcCChhhhccCCeeEEe---cccc
Q 028917 61 VPVIRPHQLKEADGFLFG---FPSR 82 (202)
Q Consensus 61 ~~~~~~~~l~~ad~ii~g---sP~y 82 (202)
+|+...+.++++|++++| +|.|
T Consensus 59 lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 59 MPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp SCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CCHHHHHHHHHCCEEEECCccCccc
Confidence 444467889999999997 5766
No 346
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=30.27 E-value=41 Score=26.29 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=32.0
Q ss_pred eEEEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
+++||-.|.. |. -++.-+.. .|+.|++.+-... .+.+.+.+||.||-+++.
T Consensus 161 ~vvVIG~s~iVG~------p~A~lL~~-~gAtVtv~hs~t~--------------------~L~~~~~~ADIVI~Avg~ 212 (288)
T 1b0a_A 161 NAVVIGASNIVGR------PMSMELLL-AGCTTTVTHRFTK--------------------NLRHHVENADLLIVAVGK 212 (288)
T ss_dssp EEEEECCCTTTHH------HHHHHHHT-TTCEEEEECSSCS--------------------CHHHHHHHCSEEEECSCC
T ss_pred EEEEECCChHHHH------HHHHHHHH-CCCeEEEEeCCch--------------------hHHHHhccCCEEEECCCC
Confidence 5677755532 42 33344444 6778887653321 245678999999999984
No 347
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=30.26 E-value=2e+02 Score=22.66 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=25.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEE
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
+|+.|||. .+.....+++.+.+.+++ .|.++...
T Consensus 165 ~~vail~~-~~~~g~~~~~~~~~~~~~-~g~~vv~~ 198 (419)
T 3h5l_A 165 NKIAIITG-PGIYSVNIANAIRDGAGE-YGYDVSLF 198 (419)
T ss_dssp SEEEEEEC-SSHHHHHHHHHHHHHGGG-GTCEEEEE
T ss_pred CEEEEEEc-CcchhHHHHHHHHHHHHH-cCCeEEEE
Confidence 47888874 355567889999999998 78776543
No 348
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=30.24 E-value=87 Score=24.27 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=24.8
Q ss_pred CceEEEEEecCCChHH---HHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGHVE---TMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~---~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||+|+++-..+--+ .=++.+.+.+++ ++..+++..
T Consensus 3 ~~~v~vl~gg~s~E~~vSl~s~~~v~~al~~----~v~~i~~~~ 42 (322)
T 2fb9_A 3 FMRVLLIAGGVSPEHEVSLLSAEGVLRHIPF----PTDLAVIAQ 42 (322)
T ss_dssp CCCEEEEEECSSTTHHHHHHHHHHHHHHCSS----CEEEEEECT
T ss_pred CcEEEEEeCCCchhHHHHHHHHHHHHHHhcc----CeEEEEEcC
Confidence 4589999976544322 236788888863 788888754
No 349
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=30.21 E-value=2.5e+02 Score=23.64 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=53.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhh----cCCCCCCCCCCcCChhhhccCCeeE--
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQK----MKAPPKTNDVPVIRPHQLKEADGFL-- 76 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~ad~ii-- 76 (202)
.+|+|+.++ ||+--=+=.+++-|.+ .|.+|+++-+.+..+.++... ..+...-. .......+.++|.||
T Consensus 53 ~~v~VlcG~--GNNGGDGlv~AR~L~~-~G~~V~v~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~dliVDa 127 (502)
T 3rss_A 53 YRFLVLCGG--GNNGGDGFVVARNLLG-VVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVV--EQFEPSILNEFDVVVDA 127 (502)
T ss_dssp CEEEEEECS--SHHHHHHHHHHHHHTT-TSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEE--SCCCGGGGGGCSEEEEE
T ss_pred CEEEEEECC--CCCHHHHHHHHHHHHH-CCCeEEEEEECCCCCHHHHHHHHHHHhCCCcee--cccccccCCCCCEEEEe
Confidence 368888877 5544333345566666 799999988876444332111 01111100 001223467788887
Q ss_pred -EeccccCCcchHHHHHHHHhhh
Q 028917 77 -FGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 77 -~gsP~y~g~~~~~~k~fld~~~ 98 (202)
||+-. .+.+.+.++.+++.+.
T Consensus 128 lfG~Gl-~~~l~~~~~~~i~~iN 149 (502)
T 3rss_A 128 IFGTGL-RGEITGEYAEIINLVN 149 (502)
T ss_dssp SCSTTC-CSCCCHHHHHHHHHHH
T ss_pred CccCCC-CCCCcHHHHHHHHHHH
Confidence 66655 5788899999999884
No 350
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Probab=30.15 E-value=62 Score=25.49 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=40.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
+|.|| ..|+ +...++..+.+ .|.+|.+++-.............. . .. ...+.+.++|.||+.+|...
T Consensus 18 ~I~II---G~G~---mG~alA~~L~~-~G~~V~~~~~~~~~~~~~a~~~G~--~---~~-~~~e~~~~aDvVilavp~~~ 84 (338)
T 1np3_A 18 KVAII---GYGS---QGHAHACNLKD-SGVDVTVGLRSGSATVAKAEAHGL--K---VA-DVKTAVAAADVVMILTPDEF 84 (338)
T ss_dssp CEEEE---CCSH---HHHHHHHHHHH-TTCCEEEECCTTCHHHHHHHHTTC--E---EE-CHHHHHHTCSEEEECSCHHH
T ss_pred EEEEE---CchH---HHHHHHHHHHH-CcCEEEEEECChHHHHHHHHHCCC--E---Ec-cHHHHHhcCCEEEEeCCcHH
Confidence 67776 3454 56667777777 787776655432110111111000 0 00 11245779999999999753
Q ss_pred CcchHHHHHHHH-hh
Q 028917 84 GVMAAQCKAFFD-AT 97 (202)
Q Consensus 84 g~~~~~~k~fld-~~ 97 (202)
...++. .+
T Consensus 85 ------~~~v~~~~i 93 (338)
T 1np3_A 85 ------QGRLYKEEI 93 (338)
T ss_dssp ------HHHHHHHHT
T ss_pred ------HHHHHHHHH
Confidence 355555 54
No 351
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=29.88 E-value=1.2e+02 Score=24.03 Aligned_cols=15 Identities=0% Similarity=-0.164 Sum_probs=10.4
Q ss_pred ChhhhccCCeeEEec
Q 028917 65 RPHQLKEADGFLFGF 79 (202)
Q Consensus 65 ~~~~l~~ad~ii~gs 79 (202)
..+.+.++|+|++.+
T Consensus 39 ~~~~~~~~d~li~~~ 53 (343)
T 2yq5_A 39 TVDLAEGCSSVSLKP 53 (343)
T ss_dssp GGGGGTTCSEEEECC
T ss_pred HHHHhcCCcEEEEcC
Confidence 456677888887753
No 352
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=29.73 E-value=1.4e+02 Score=20.49 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=29.2
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+..+|++|+....-...-...++.|+..+.. ....++++.++++
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~n 135 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKT----YSWDNAQVILVGN 135 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEE
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEE
Confidence 4567899999998766543333445566665532 1235677777766
No 353
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=29.64 E-value=40 Score=26.59 Aligned_cols=35 Identities=11% Similarity=-0.144 Sum_probs=21.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+++|+| +|-|..+...+++.|.+ .|.+|..++-.
T Consensus 27 M~k~vlV-----tGatG~IG~~l~~~L~~-~g~~V~~~~r~ 61 (381)
T 1n7h_A 27 PRKIALI-----TGITGQDGSYLTEFLLG-KGYEVHGLIRR 61 (381)
T ss_dssp -CCEEEE-----ETTTSHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred hCCeEEE-----EcCCchHHHHHHHHHHH-CCCEEEEEecC
Confidence 4445555 34455577777777777 78888776543
No 354
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=29.61 E-value=47 Score=25.21 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=38.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
||.|| + .|+ +...++..+.+ .|.+|.+++...... ..+..... . ......+.+.++|.||+..|.
T Consensus 2 ~i~ii-G--~G~---mG~~~a~~l~~-~g~~V~~~~~~~~~~-~~~~~~g~--~---~~~~~~~~~~~~Dvvi~~vp~-- 66 (296)
T 2gf2_A 2 PVGFI-G--LGN---MGNPMAKNLMK-HGYPLIIYDVFPDAC-KEFQDAGE--Q---VVSSPADVAEKADRIITMLPT-- 66 (296)
T ss_dssp CEEEE-C--CST---THHHHHHHHHH-TTCCEEEECSSTHHH-HHHHTTTC--E---ECSSHHHHHHHCSEEEECCSS--
T ss_pred eEEEE-e--ccH---HHHHHHHHHHH-CCCEEEEEeCCHHHH-HHHHHcCC--e---ecCCHHHHHhcCCEEEEeCCC--
Confidence 67776 2 343 33345555555 677887776543110 11111100 0 000112446789999999875
Q ss_pred CcchHHHHHHHHhh
Q 028917 84 GVMAAQCKAFFDAT 97 (202)
Q Consensus 84 g~~~~~~k~fld~~ 97 (202)
+..++..++.+
T Consensus 67 ---~~~~~~v~~~~ 77 (296)
T 2gf2_A 67 ---SINAIEAYSGA 77 (296)
T ss_dssp ---HHHHHHHHHST
T ss_pred ---HHHHHHHHhCc
Confidence 23456666543
No 355
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=29.61 E-value=87 Score=23.34 Aligned_cols=37 Identities=11% Similarity=-0.047 Sum_probs=26.9
Q ss_pred eEEEEEecCC---ChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLY---GHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~---G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
.|.++..+.. .....+.+.+.+.+++ .|.++.+.+..
T Consensus 10 ~Igvv~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 49 (288)
T 3gv0_A 10 VIALVLSVDEELMGFTSQMVFGITEVLST-TQYHLVVTPHI 49 (288)
T ss_dssp EEEEECBCCCCSSCHHHHHHHHHHHHHTT-SSCEEEECCBS
T ss_pred EEEEEecCCccccHHHHHHHHHHHHHHHH-cCCEEEEecCC
Confidence 4666665432 5678899999999998 89887776544
No 356
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=29.57 E-value=81 Score=26.44 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=26.4
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+.++|.+.....+.+|+.|++.+++ .|+++++..+
T Consensus 362 l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~~ 396 (528)
T 3ry3_A 362 ITLWYTSGDTTRRDLAQALRSMLKP-IGIDVDLKSG 396 (528)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHGG-GTCEEEEEEE
T ss_pred EEEEecCCCHHHHHHHHHHHHHHHH-cCCEEEEEec
Confidence 5555655444456899999999999 8999988654
No 357
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=29.55 E-value=45 Score=26.21 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=24.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+++.....|+... +..+++.|.+ .|.+|.++.-.
T Consensus 2 rIl~~~~~~~Gh~~p-~~~la~~L~~-~Gh~V~~~~~~ 37 (384)
T 2p6p_A 2 RILFVAAGSPATVFA-LAPLATAARN-AGHQVVMAANQ 37 (384)
T ss_dssp EEEEECCSSHHHHHH-HHHHHHHHHH-TTCEEEEEECG
T ss_pred EEEEEeCCccchHhH-HHHHHHHHHH-CCCEEEEEeCH
Confidence 888874433566543 4467778877 79999987643
No 358
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=29.49 E-value=1.2e+02 Score=23.70 Aligned_cols=14 Identities=7% Similarity=0.264 Sum_probs=11.8
Q ss_pred ccCCeeEEeccccC
Q 028917 70 KEADGFLFGFPSRF 83 (202)
Q Consensus 70 ~~ad~ii~gsP~y~ 83 (202)
.+.|+|++.+|...
T Consensus 65 ~~~D~V~i~tp~~~ 78 (354)
T 3db2_A 65 EDVEMVIITVPNDK 78 (354)
T ss_dssp SSCCEEEECSCTTS
T ss_pred CCCCEEEEeCChHH
Confidence 46899999999864
No 359
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=29.45 E-value=76 Score=25.20 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=30.4
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+++++|.|...+..|+.+.+-+.+ .|+.+++..+..
T Consensus 95 v~Ll~SDT~~G~l~AeiLke~l~~-~G~~v~~~~V~g 130 (324)
T 3qyf_A 95 VFLYSTNTSNSQLAGEVIRDYLIE-EGIRSELVTVKT 130 (324)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHH-TTCEEEEEEECC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHH-cCCeeEEEEcCC
Confidence 578899999999999999999988 898887776654
No 360
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=29.44 E-value=1.1e+02 Score=20.60 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=24.7
Q ss_pred CceEEEEE-ecCCCh-HHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVY-YSLYGH-VETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy-~S~~G~-T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+|++++. .+|+|+ ...-+=.++..+.+ .|.++.++-+.|
T Consensus 5 Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a-~~~~v~Vff~~D 46 (136)
T 2hy5_B 5 VKKFMYLNRKAPYGTIYAWEALEVVLIGAA-FDQDVCVLFLDD 46 (136)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGG-GCCEEEEEECGG
T ss_pred hhEEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEEhH
Confidence 44677665 556875 33444445555555 577888888776
No 361
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=29.37 E-value=30 Score=27.50 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=25.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|||+++.....|+... +..+++.+.+ .|.+|.++.-.
T Consensus 21 MrIl~~~~~~~Gh~~~-~~~la~~L~~-~GheV~v~~~~ 57 (412)
T 3otg_A 21 MRVLFASLGTHGHTYP-LLPLATAARA-AGHEVTFATGE 57 (412)
T ss_dssp CEEEEECCSSHHHHGG-GHHHHHHHHH-TTCEEEEEECG
T ss_pred eEEEEEcCCCcccHHH-HHHHHHHHHH-CCCEEEEEccH
Confidence 4888876554566544 3356777777 79999887654
No 362
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=29.34 E-value=1.1e+02 Score=24.20 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=27.7
Q ss_pred CCc-eEEEEEecCCCh---HHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MAT-KIYIVYYSLYGH---VETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~-kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|.+ ||.|++|-.++- +-.=+..+.+.|++ .|.++..+++.
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~Sa~~v~~aL~~-~gy~v~~i~i~ 44 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQSASAVFENINT-NKFDIIPIGIT 44 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCT-TTEEEEEEEEC
T ss_pred CCCCEEEEEECCCccchHHHHHHHHHHHHHHhH-hCCEEEEEEEe
Confidence 544 599999855432 22336778899998 89999888764
No 363
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=29.17 E-value=84 Score=21.30 Aligned_cols=39 Identities=10% Similarity=-0.007 Sum_probs=26.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.++|++.+ ..+.++..+++...+-++. .|.++.++.+.+
T Consensus 5 ~~~ILv~v-D~s~~s~~al~~A~~la~~-~~a~l~ll~v~~ 43 (170)
T 2dum_A 5 FRKVLFPT-DFSEGAYRAVEVFEKRNKM-EVGEVILLHVID 43 (170)
T ss_dssp CSEEEEEC-CSSHHHHHHHHHHHHHCCS-CCSEEEEEEEEE
T ss_pred cceEEEEe-cCCHHHHHHHHHHHHHHHh-cCCEEEEEEEec
Confidence 45677765 2234566777777777776 688888888754
No 364
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=29.14 E-value=52 Score=25.55 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=26.4
Q ss_pred EEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 7 IVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 7 iiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
||-+++.|.+..+++.+++.+.+..|..|.+.+-
T Consensus 13 ivp~~~GG~~D~~aR~la~~l~~~lg~~vvV~n~ 46 (301)
T 2qpq_A 13 IVTFPPGGGTDMLARLIGNYLTESLGQTAVVENR 46 (301)
T ss_dssp EESSCTTSHHHHHHHHHHHHHHHGGGSCEEEEEC
T ss_pred EEccCCCcHHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4557778999999999999998745767776664
No 365
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=29.00 E-value=56 Score=21.98 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=18.1
Q ss_pred CceEEEEEecCCChH--HHHHHHHHHHhhc
Q 028917 2 ATKIYIVYYSLYGHV--ETMAREVQRGANS 29 (202)
Q Consensus 2 ~~kiliiy~S~~G~T--~~la~~i~~~~~~ 29 (202)
|+|||.|. +||+ ..||+.+.+.+..
T Consensus 4 m~~VLFVC---~gN~cRSpmAEa~~~~~~~ 30 (134)
T 2l17_A 4 MKKVMFVC---KRNSCRSQMAEGFAKTLGA 30 (134)
T ss_dssp CEEEEEEC---CSSTHHHHHHHHHHHHHSB
T ss_pred CCEEEEEe---CCchHHHHHHHHHHHHHcC
Confidence 34788776 5554 6799999888864
No 366
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=28.96 E-value=93 Score=24.84 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=29.8
Q ss_pred CceEEEEEecCCC---hHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYG---HVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G---~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||.|+|+..++ =+-.=|..+.+.|.. .+.++..+.+..
T Consensus 10 ~~~v~vl~GG~S~E~~vS~~sa~~v~~~l~~-~~~~v~~i~i~~ 52 (373)
T 3lwb_A 10 RVRVAVVFGGRSNEHAISCVSAGSILRNLDS-RRFDVIAVGITP 52 (373)
T ss_dssp CEEEEEEEEC-----CHHHHHHHHHHHHSCT-TTEEEEEEEECT
T ss_pred CcEEEEEecCCCCChhhHHHHHHHHHHHhhh-cCceEEEEEecC
Confidence 3479999986543 466778889999987 788998888863
No 367
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=28.89 E-value=56 Score=25.52 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=17.7
Q ss_pred hhccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 68 QLKEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 68 ~l~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.+.++|.||+.+|.+. ....++.+
T Consensus 72 ~~~~~D~vi~~v~~~~------~~~~~~~l 95 (359)
T 1bg6_A 72 AVKDADVILIVVPAIH------HASIAANI 95 (359)
T ss_dssp HHTTCSEEEECSCGGG------HHHHHHHH
T ss_pred HHhcCCEEEEeCCchH------HHHHHHHH
Confidence 3678999999999874 24555555
No 368
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=28.84 E-value=1.7e+02 Score=21.41 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=27.1
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+++..
T Consensus 10 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 47 (277)
T 3cs3_A 10 IIGVYLADYGGSFYGELLEGIKKGLAL-FDYEMIVCSGK 47 (277)
T ss_dssp EEEEEECSSCTTTHHHHHHHHHHHHHT-TTCEEEEEEST
T ss_pred EEEEEecCCCChhHHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 466666443 45667889999999998 89888776654
No 369
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=28.82 E-value=43 Score=25.99 Aligned_cols=52 Identities=6% Similarity=-0.009 Sum_probs=0.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
++++|| |.+..+.+-++..+.. .|+.|++.+-... .+.+.+.+||.||-++|
T Consensus 151 k~vvVv-----G~s~iVG~plA~lL~~-~gAtVtv~~~~t~--------------------~L~~~~~~ADIVI~Avg 202 (276)
T 3ngx_A 151 NTVTIV-----NRSPVVGRPLSMMLLN-RNYTVSVCHSKTK--------------------DIGSMTRSSKIVVVAVG 202 (276)
T ss_dssp CEEEEE-----CCCTTTHHHHHHHHHH-TTCEEEEECTTCS--------------------CHHHHHHHSSEEEECSS
T ss_pred CEEEEE-----cCChHHHHHHHHHHHH-CCCeEEEEeCCcc--------------------cHHHhhccCCEEEECCC
No 370
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=28.82 E-value=34 Score=26.01 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=22.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+++|+| +|-|-.+...+++.|.+ .|.+|..++-.
T Consensus 7 ~~~vlV-----tGatG~iG~~l~~~L~~-~g~~V~~~~r~ 40 (321)
T 3vps_A 7 KHRILI-----TGGAGFIGGHLARALVA-SGEEVTVLDDL 40 (321)
T ss_dssp CCEEEE-----ETTTSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred CCeEEE-----ECCCChHHHHHHHHHHH-CCCEEEEEecC
Confidence 345655 35555577777777777 78888776543
No 371
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=28.76 E-value=1.3e+02 Score=21.16 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=24.8
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEE
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
|..++.+++|.+ .|-|-.+.+.+.+... .|..+-++
T Consensus 1 ~~g~i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~ 37 (184)
T 2orw_A 1 MSGKLTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVF 37 (184)
T ss_dssp -CCCEEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEE
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEE
Confidence 555788999996 7999887777666554 45555554
No 372
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=28.54 E-value=1.4e+02 Score=20.30 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=25.3
Q ss_pred hhhhccCCeeEEeccccCCcchHH------HHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQ------CKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~------~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+.++|++|+..-.-....... +..|+..+ .....+.++.++++
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~-----~~~~~~~piilv~N 143 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY-----GLTLDDVPIVIQVN 143 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT-----TCCTTSSCEEEEEE
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh-----ccccCCCCEEEEEE
Confidence 345788999999876553322211 22222222 12346788877776
No 373
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=28.52 E-value=1.6e+02 Score=24.61 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=23.5
Q ss_pred ccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCCC
Q 028917 104 QALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLGY 147 (202)
Q Consensus 104 ~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~~ 147 (202)
..|.||++++++- +.. ...+..+|...||.++..+.
T Consensus 328 ~~l~GKrv~i~~~-----~~~---~~~l~~~L~ElGmevv~~gt 363 (483)
T 3pdi_A 328 ARLEGKRVLLYTG-----GVK---SWSVVSALQDLGMKVVATGT 363 (483)
T ss_dssp HHHTTCEEEEECS-----SSC---HHHHHHHHHHHTCEEEEECB
T ss_pred HHhcCCEEEEECC-----Cch---HHHHHHHHHHCCCEEEEEec
Confidence 3588999988642 111 22345567889999996544
No 374
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=28.44 E-value=1.9e+02 Score=22.61 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=41.2
Q ss_pred CCeeEEeccccCCcchHHHHHH-----------------------HHhhhhhhhhccCCCCceEEEEecCCCCCC----h
Q 028917 72 ADGFLFGFPSRFGVMAAQCKAF-----------------------FDATYELWASQALAGKPAGIFWSTGFHGGG----Q 124 (202)
Q Consensus 72 ad~ii~gsP~y~g~~~~~~k~f-----------------------ld~~~~~~~~~~l~gK~~~~~~t~g~~~g~----~ 124 (202)
-|.||+.+|.|.+.....+..- ++.+ ...+..++.+++.+...+.|+ .
T Consensus 128 ~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l-----~~~l~~~~~~v~~~p~np~g~~~~~~ 202 (406)
T 4adb_A 128 KSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSA-----SALIDDSTCAVIVEPIQGEGGVVPAS 202 (406)
T ss_dssp CCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHH-----HTTCSTTEEEEEECSEETTTTSEECC
T ss_pred CcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHH-----HHHhcCCeEEEEEeCCcCCCCCccCC
Confidence 3889999999988764433210 1111 123456666676664333343 3
Q ss_pred HHHHHHHHHHHHHcCcEEe
Q 028917 125 ELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 125 ~~~l~~~~~~l~~~g~~vv 143 (202)
...+..+.+....+|..++
T Consensus 203 ~~~l~~l~~l~~~~~~~li 221 (406)
T 4adb_A 203 NAFLQGLRELCNRHNALLI 221 (406)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHcCCEEE
Confidence 4457888888888888776
No 375
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=28.44 E-value=1.6e+02 Score=22.99 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=34.8
Q ss_pred eccccCC---cchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 78 GFPSRFG---VMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 78 gsP~y~g---~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
..|++|+ ...-+.+.++|-+.-.-..+.++|++++.++- ..++ .+..++...+...|+.+.
T Consensus 122 ~vPVINag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD--~~~~---rva~Sl~~~~~~~G~~v~ 185 (308)
T 1ml4_A 122 EVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGD--LKYG---RTVHSLAEALTFYDVELY 185 (308)
T ss_dssp SSCEEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESC--TTTC---HHHHHHHHHGGGSCEEEE
T ss_pred CCCEEeCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCC--CCcC---chHHHHHHHHHHCCCEEE
Confidence 3577773 23445577777653211124678888766542 1111 356677777777788765
No 376
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=28.42 E-value=51 Score=25.68 Aligned_cols=14 Identities=7% Similarity=0.114 Sum_probs=11.9
Q ss_pred hhhhccCCeeEEec
Q 028917 66 PHQLKEADGFLFGF 79 (202)
Q Consensus 66 ~~~l~~ad~ii~gs 79 (202)
.+.+.++|+|+|+-
T Consensus 105 ~~~l~~ad~I~v~G 118 (291)
T 3en0_A 105 RLFVEQCTGIFMTG 118 (291)
T ss_dssp HHHHHHCSEEEECC
T ss_pred HHHHhcCCEEEECC
Confidence 56899999999974
No 377
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=28.28 E-value=1.1e+02 Score=22.45 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+ |++.|++.. .|.|- ++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~vi~v~s~kgGvGKTt-~a~~LA~~la~-~g~~VlliD~D~ 41 (260)
T 3q9l_A 1 MA-RIIVVTSGKGGVGKTT-SSAAIATGLAQ-KGKKTVVIDFAI 41 (260)
T ss_dssp -C-EEEEEECSSTTSSHHH-HHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CC-eEEEEECCCCCCcHHH-HHHHHHHHHHh-CCCcEEEEECCC
Confidence 55 666555443 35554 55566666666 788999999864
No 378
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=28.07 E-value=1.4e+02 Score=19.99 Aligned_cols=47 Identities=4% Similarity=0.000 Sum_probs=30.1
Q ss_pred ChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 65 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...-+..+|++|+....-...-...++.|+..+.. ...+.++.++++
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-----~~~~~p~ilv~n 121 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-----NCDDVCRILVGN 121 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH-----HCTTSEEEEEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 34567889999998776554444445666666532 345677766665
No 379
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=28.06 E-value=90 Score=24.49 Aligned_cols=53 Identities=8% Similarity=-0.058 Sum_probs=0.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
++++||-.|.. +.+-++..+.. .|+.|++.+-... .+.+.+.+||.||-+++.
T Consensus 166 k~vvVIG~s~i-----VG~p~A~lL~~-~gAtVtv~hs~t~--------------------~L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 166 RHAVVVGRSKI-----VGAPMHDLLLW-NNATVTTCHSKTA--------------------HLDEEVNKGDILVVATGQ 218 (301)
T ss_dssp CEEEEECCCTT-----THHHHHHHHHH-TTCEEEEECTTCS--------------------SHHHHHTTCSEEEECCCC
T ss_pred CEEEEECCCch-----HHHHHHHHHHh-CCCeEEEEECCcc--------------------cHHHHhccCCEEEECCCC
No 380
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=27.94 E-value=61 Score=22.37 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=25.3
Q ss_pred CCceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+.++++|.|-+ .|.|- +++.+++.+.. .|++..++++.+
T Consensus 1 M~~~~I~i~G~~GsGKsT-~~~~L~~~l~~-~g~~~~~i~~~~ 41 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTT-SSQLAMDNLRK-EGVNYKMVSFGS 41 (192)
T ss_dssp --CCEEEEECCTTSCHHH-HHHHHHHHHHT-TTCCCEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHH-HHHHHHHHHHh-cCcceEEEehHH
Confidence 554566666554 67654 77888888876 676667777543
No 381
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=27.93 E-value=59 Score=23.11 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=18.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+||-. ....|..+++. +++ .|++++++...
T Consensus 2 ~i~iiDn-~~s~~~~i~~~----l~~-~G~~~~v~~~~ 33 (192)
T 1i1q_B 2 DILLLDN-IDSFTWNLADQ----LRT-NGHNVVIYRNH 33 (192)
T ss_dssp EEEEEEC-SCSSHHHHHHH----HHH-TTCEEEEEETT
T ss_pred cEEEEEC-CccHHHHHHHH----HHH-CCCeEEEEECC
Confidence 6888861 11235544444 455 68888887654
No 382
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A
Probab=27.85 E-value=1.2e+02 Score=22.84 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=35.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccccC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSRF 83 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y~ 83 (202)
+++|| | .|. ++..++..+.+ .|+++.+++-..... ..+.... ... -.+ ...+.+.++|.||..+|.-.
T Consensus 131 ~v~ii-G--aG~---~g~aia~~L~~-~g~~V~v~~r~~~~~-~~l~~~~-g~~--~~~-~~~~~~~~aDiVi~atp~~~ 198 (275)
T 2hk9_A 131 SILVL-G--AGG---ASRAVIYALVK-EGAKVFLWNRTKEKA-IKLAQKF-PLE--VVN-SPEEVIDKVQVIVNTTSVGL 198 (275)
T ss_dssp EEEEE-C--CSH---HHHHHHHHHHH-HTCEEEEECSSHHHH-HHHTTTS-CEE--ECS-CGGGTGGGCSEEEECSSTTS
T ss_pred EEEEE-C--chH---HHHHHHHHHHH-cCCEEEEEECCHHHH-HHHHHHc-CCe--eeh-hHHhhhcCCCEEEEeCCCCC
Confidence 55555 3 353 56666777766 677676665432100 0010000 000 000 12345679999999999865
Q ss_pred C
Q 028917 84 G 84 (202)
Q Consensus 84 g 84 (202)
.
T Consensus 199 ~ 199 (275)
T 2hk9_A 199 K 199 (275)
T ss_dssp S
T ss_pred C
Confidence 3
No 383
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=27.77 E-value=86 Score=21.00 Aligned_cols=40 Identities=20% Similarity=0.087 Sum_probs=26.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+++|++-+. .+-++..+++...+-++. .|.++.++.+.+
T Consensus 4 ~~~~ILv~vD-~s~~s~~al~~a~~la~~-~~a~l~ll~v~~ 43 (162)
T 1mjh_A 4 MYKKILYPTD-FSETAEIALKHVKAFKTL-KAEEVILLHVID 43 (162)
T ss_dssp CCCEEEEECC-SCHHHHHHHHHHHHTCCS-SCCEEEEEEEEE
T ss_pred ccceEEEEeC-CCHHHHHHHHHHHHHHhh-cCCeEEEEEEec
Confidence 4557777652 233456677777776666 688888888754
No 384
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=27.72 E-value=47 Score=24.16 Aligned_cols=44 Identities=5% Similarity=-0.120 Sum_probs=25.6
Q ss_pred hhhhccCCeeEEeccccCC----cchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFG----VMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g----~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
.+++.++|.||+....-.. .-.+.+..|+.+... +||+++.+++
T Consensus 69 ~~~~~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~-------~g~~iaaIC~ 116 (209)
T 3er6_A 69 WQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHL-------KGSKIVAIDT 116 (209)
T ss_dssp GGGCSCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHH-------TTCEEEEETT
T ss_pred ccccCCCCEEEECCCCCchhhhccCCHHHHHHHHHHHh-------cCCEEEEEcH
Confidence 4556789999985422111 125567777766532 5666666554
No 385
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=27.69 E-value=68 Score=25.34 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=34.0
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|+++.|+.++ +| ..+|+.|++.+.. .=.++++.+..|- +......+.+...|.+|+.|-
T Consensus 5 ~~~~~i~~g~--~~-~~La~~ia~~lg~-~l~~~~~~~F~dG----------------E~~v~i~esvrg~dV~iiqs~ 63 (319)
T 3dah_A 5 HDGLMVFTGN--AN-PALAQEVVKILGI-PLGKAMVSRFSDG----------------EIQVEIQENVRGKDVFVLQST 63 (319)
T ss_dssp -CCEEEEECS--SC-HHHHHHHHHHHTS-CCCCEEEEECTTS----------------CEEEEECSCCBTCEEEEECCC
T ss_pred CCceEEEECC--CC-HHHHHHHHHHhCC-ceeeeEEEECCCC----------------CEEEEECCCcCCCeEEEEccC
Confidence 3356666443 33 4688889888865 3335666665542 000013456778899998763
No 386
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=27.60 E-value=30 Score=28.03 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=24.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|||+++.+...|+..- .-.+++.|.+ .|++|.++--.
T Consensus 21 mrIl~~~~~~~GHv~p-~l~la~~L~~-~GheV~~~~~~ 57 (441)
T 2yjn_A 21 MRVVFSSMASKSHLFG-LVPLAWAFRA-AGHEVRVVASP 57 (441)
T ss_dssp CEEEEECCSCHHHHTT-THHHHHHHHH-TTCEEEEEECG
T ss_pred cEEEEEcCCCcchHhH-HHHHHHHHHH-CCCeEEEEeCc
Confidence 4888873323466553 4466777777 79999887643
No 387
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=27.53 E-value=77 Score=25.14 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=33.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEec
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGF 79 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gs 79 (202)
++.|+.+|.+ ..+|+.|++.+.- .=.++++.+..|- +......+.+...|.+|+.|
T Consensus 3 ~~~if~g~~~---~~La~~ia~~lg~-~l~~~~~~~F~dG----------------E~~v~i~esvrg~dV~iiqs 58 (326)
T 3s5j_B 3 NIKIFSGSSH---QDLSQKIADRLGL-ELGKVVTKKFSNQ----------------ETCVEIGESVRGEDVYIVQS 58 (326)
T ss_dssp CEEEEECSSC---CHHHHHHHHHTTC-CCCCEEEEECTTS----------------CEEEEECSCCTTCEEEEECC
T ss_pred ceEEEECCCC---HHHHHHHHHHhCC-ceeeeEEeECCCC----------------CEEEEECCCcCCCcEEEEec
Confidence 5666655433 3588889888864 2235666665542 00001345677889999986
No 388
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=27.49 E-value=49 Score=25.90 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=27.3
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+||-+++.|.+..+++.+++.+.+..|..|.+.+..
T Consensus 21 liVp~~~GG~~D~~aR~la~~l~~~lg~~vvV~N~p 56 (312)
T 2f5x_A 21 MVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKG 56 (312)
T ss_dssp EEESSCTTSHHHHHHHHHHHHHHHHHSSCEEEEECC
T ss_pred EEEeeCCccHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 445577789999999999999987457677776653
No 389
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=27.26 E-value=72 Score=21.04 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=21.6
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
+.||+.++-.+-+-|.. .|++ .|++++.+|+.+.
T Consensus 7 i~iY~~p~C~~c~ka~~---~L~~-~gi~~~~~di~~~ 40 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETLA---LVEQ-QGITPQVVLYLET 40 (121)
T ss_dssp CEEECCTTCHHHHHHHH---HHHT-TTCCCEEECTTTS
T ss_pred EEEEECCCCHHHHHHHH---HHHH-cCCCcEEEeeccC
Confidence 56787776444333333 3445 7888999998763
No 390
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=27.22 E-value=1.1e+02 Score=24.93 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=35.8
Q ss_pred CCceEEEEEecCCCh-----HHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCee
Q 028917 1 MATKIYIVYYSLYGH-----VETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGF 75 (202)
Q Consensus 1 M~~kiliiy~S~~G~-----T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~i 75 (202)
|+.||.+|-+-.-|- +.++.+++.+. .|+++++....- -........ +.+|+...+.++++|++
T Consensus 22 M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~----~g~~~~~~~~~~--G~~~~~~~G-----~~lp~~tl~~~~~~dai 90 (390)
T 3u1h_A 22 MKKKIAVLPGDGIGPEVMEAAIEVLKAVAER----FGHEFEFEYGLI--GGAAIDEAG-----TPLPEETLDVCRGSDAI 90 (390)
T ss_dssp --CEEEEEEESTTHHHHHHHHHHHHHHHHHH----HSCCCEEEECCC--THHHHHSSS-----SSSCHHHHHHHHTSSEE
T ss_pred ccceEEEECCCccCHHHHHHHHHHHHHHHHh----cCCCeEEEEEEc--CHHHHHhhC-----CcCCHHHHHHHHHCCEE
Confidence 666899987665552 23333333322 244455444321 011111111 22343457889999999
Q ss_pred EEe---cccc
Q 028917 76 LFG---FPSR 82 (202)
Q Consensus 76 i~g---sP~y 82 (202)
++| +|.|
T Consensus 91 L~Gavg~P~~ 100 (390)
T 3u1h_A 91 LLGAVGGPKW 100 (390)
T ss_dssp EEEECCCSTT
T ss_pred EECCcCCCCc
Confidence 997 5766
No 391
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=27.18 E-value=70 Score=25.10 Aligned_cols=38 Identities=8% Similarity=-0.117 Sum_probs=25.4
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+|++||+-...|+. +..+.+.+.+++ .|+++++....
T Consensus 29 ~~~~~vi~Np~sg~~-~~~~~i~~~l~~-~g~~~~~~~t~ 66 (332)
T 2bon_A 29 FPASLLILNGKSTDN-LPLREAIMLLRE-EGMTIHVRVTW 66 (332)
T ss_dssp -CCEEEEECSSSTTC-HHHHHHHHHHHT-TTCCEEEEECC
T ss_pred cceEEEEECCCCCCC-chHHHHHHHHHH-cCCcEEEEEec
Confidence 457877774333433 566788888988 89888776543
No 392
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=26.93 E-value=1.1e+02 Score=22.54 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=23.4
Q ss_pred CCceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+ |++.|.... .|.|- ++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~~I~v~s~kgGvGKTt-~a~~LA~~la~-~g~~VlliD~D~ 41 (263)
T 1hyq_A 1 MV-RTITVASGKGGTGKTT-ITANLGVALAQ-LGHDVTIVDADI 41 (263)
T ss_dssp -C-EEEEEEESSSCSCHHH-HHHHHHHHHHH-TTCCEEEEECCC
T ss_pred CC-eEEEEECCCCCCCHHH-HHHHHHHHHHh-CCCcEEEEECCC
Confidence 65 555544433 35554 44455666666 688899999864
No 393
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=26.90 E-value=1.2e+02 Score=22.52 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=35.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHH--HHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSV--ILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
||.|| ..|+ +...++..+.+ .|.+|.+++... .+.. .+...... . ...+.+.++|.||+..|.
T Consensus 2 ~I~iI---G~G~---mG~~la~~l~~-~g~~V~~~~~~~-~~~~~~~~~~~g~~-~------~~~~~~~~aDvvi~~v~~ 66 (264)
T 1i36_A 2 RVGFI---GFGE---VAQTLASRLRS-RGVEVVTSLEGR-SPSTIERARTVGVT-E------TSEEDVYSCPVVISAVTP 66 (264)
T ss_dssp EEEEE---SCSH---HHHHHHHHHHH-TTCEEEECCTTC-CHHHHHHHHHHTCE-E------CCHHHHHTSSEEEECSCG
T ss_pred eEEEE---echH---HHHHHHHHHHH-CCCeEEEeCCcc-CHHHHHHHHHCCCc-C------CHHHHHhcCCEEEEECCC
Confidence 67776 3454 55566677766 688777643310 1111 11111110 0 123446899999999998
Q ss_pred cC
Q 028917 82 RF 83 (202)
Q Consensus 82 y~ 83 (202)
..
T Consensus 67 ~~ 68 (264)
T 1i36_A 67 GV 68 (264)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 394
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=26.84 E-value=1.3e+02 Score=21.65 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=24.3
Q ss_pred CCceEEEEEecC--CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSL--YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~--~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+ |++.|++.. .|.|- ++-.++..+.+ .|..|-++|+..
T Consensus 1 M~-~~i~v~s~kgGvGKTt-~a~~LA~~la~-~g~~VlliD~D~ 41 (237)
T 1g3q_A 1 MG-RIISIVSGKGGTGKTT-VTANLSVALGD-RGRKVLAVDGDL 41 (237)
T ss_dssp CC-EEEEEECSSTTSSHHH-HHHHHHHHHHH-TTCCEEEEECCT
T ss_pred Cc-eEEEEecCCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeCCC
Confidence 55 655555443 35554 44455666666 688899999864
No 395
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=26.81 E-value=80 Score=22.53 Aligned_cols=134 Identities=11% Similarity=0.012 Sum_probs=57.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC---CCcHHHHhhcCCCC-CCCC-CCcCChhh-hccCCe
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE---TLSSVILQKMKAPP-KTND-VPVIRPHQ-LKEADG 74 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~---~~~~~~~~~~~~~~-~~~~-~~~~~~~~-l~~ad~ 74 (202)
|.+||++.. |......+ +-.+.+.|++ .|++|.++--.. ....+.++.-..+. .+.+ .. ..... -.++|+
T Consensus 4 m~k~Illgv-TGs~aa~k-~~~ll~~L~~-~g~~V~vv~T~~A~~fi~~~~l~~l~~~v~~~~~~~~-~~hi~l~~~aD~ 79 (175)
T 3qjg_A 4 MGENVLICL-CGSVNSIN-ISHYIIELKS-KFDEVNVIASTNGRKFINGEILKQFCDNYYDEFEDPF-LNHVDIANKHDK 79 (175)
T ss_dssp -CCEEEEEE-CSSGGGGG-HHHHHHHHTT-TCSEEEEEECTGGGGGSCHHHHHHHCSCEECTTTCTT-CCHHHHHHTCSE
T ss_pred CCCEEEEEE-eCHHHHHH-HHHHHHHHHH-CCCEEEEEECcCHHHHhhHHHHHHhcCCEEecCCCCc-cccccccchhCE
Confidence 455665443 32222334 3345666776 788888775433 12222222110011 1111 11 12223 357998
Q ss_pred eEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEec---CCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 75 FLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWST---GFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 75 ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~---g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
+|+.--+-+ .+.....-+-|.+..... .-.+|++.++-.. -|.+ ..+++++ ..|...|..+++.
T Consensus 80 ~vVaPaTan-TlakiA~GiaDnLlt~~~--la~~~pvvl~Pamn~~m~~~---p~~~~Nl-~~L~~~G~~iv~P 146 (175)
T 3qjg_A 80 IIILPATSN-TINKIANGICDNLLLTIC--HTAFEKLSIFPNMNLRMWEN---PVTQNNI-RLLKDYGVSIYPA 146 (175)
T ss_dssp EEEEEECHH-HHHHHHTTCCCSHHHHHH--HTCGGGEEEEECEEHHHHTC---HHHHHHH-HHHHHTTCEECCC
T ss_pred EEEeeCCHH-HHHHHHccccCCHHHHHH--HHcCCCEEEEecCChhhhcC---HHHHHHH-HHHHHCCCEEECC
Confidence 887755532 221111111111100000 1136777666532 2211 2334444 4567789998874
No 396
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=26.77 E-value=43 Score=24.19 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=22.4
Q ss_pred hccCCeeEEec-cccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 69 LKEADGFLFGF-PSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 69 l~~ad~ii~gs-P~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
..++|.||+-. +...... +.+..|+.+... +||+++.+++
T Consensus 69 ~~~~D~livpGG~~~~~~~-~~l~~~l~~~~~-------~g~~iaaIC~ 109 (202)
T 3gra_A 69 LKELDLLVVCGGLRTPLKY-PELDRLLNDCAA-------HGMALGGLWN 109 (202)
T ss_dssp GTTCSEEEEECCTTCCSCC-TTHHHHHHHHHH-------HTCEEEEETT
T ss_pred CCCCCEEEEeCCCchhhcc-HHHHHHHHHHHh-------hCCEEEEECH
Confidence 56899999843 2222222 566777766532 4555555443
No 397
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=26.68 E-value=52 Score=25.77 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=27.2
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|+-+++.|.|..+++.+++.+.+..|..|.+.+-.
T Consensus 23 iivp~~~GG~~D~~aR~la~~l~~~lg~~vvV~N~p 58 (314)
T 2dvz_A 23 VIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKG 58 (314)
T ss_dssp EEESSCTTSHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred EEEccCCccHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 355577789999999999999987447777776653
No 398
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=26.66 E-value=1.3e+02 Score=23.56 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=40.9
Q ss_pred ceEEEEEecCC-ChHHHHHHHHHHHhhcc-CCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc--CChh--hhccCCeeE
Q 028917 3 TKIYIVYYSLY-GHVETMAREVQRGANSV-LGVEATLWQVPETLSSVILQKMKAPPKTNDVPV--IRPH--QLKEADGFL 76 (202)
Q Consensus 3 ~kiliiy~S~~-G~T~~la~~i~~~~~~~-~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~l~~ad~ii 76 (202)
+||+|+.-.+. +.|+. .+.+.+... ..++++++++.+..+..- ..+.+.. ...+ +..++|++|
T Consensus 36 lkI~ILnlmp~k~~te~---qf~rlL~~~~~qv~v~~~~~~~~~~~~~--------~~~hl~~~y~~f~~~~~~~~DglI 104 (301)
T 2vdj_A 36 LKIAILNLMPTKQETEA---QLLRLIGNTPLQLDVHLLHMESHLSRNV--------AQEHLTSFYKTFRDIENEKFDGLI 104 (301)
T ss_dssp EEEEEECCCSSHHHHHH---HHHHHHTCSSSCEEEEEECCCC--------------------CCEECHHHHTTSCEEEEE
T ss_pred ceEEEEeCCCCcCchHH---HHHHHhcCCCCcEEEEEEeccCCCCCCc--------cHHHHhhcccCcccccccccCEEE
Confidence 48999998664 67764 444444430 235666666654211100 0001110 0122 236789887
Q ss_pred E-eccccC---Ccch--HHHHHHHHhh
Q 028917 77 F-GFPSRF---GVMA--AQCKAFFDAT 97 (202)
Q Consensus 77 ~-gsP~y~---g~~~--~~~k~fld~~ 97 (202)
+ |+|+-. ..+| ..++.++++.
T Consensus 105 ITGap~~~~~~ed~~yw~el~~li~~~ 131 (301)
T 2vdj_A 105 ITGAPVETLSFEEVDYWEELKRIMEYS 131 (301)
T ss_dssp ECCCTTTTSCGGGSTTHHHHHHHHHHH
T ss_pred ECCCCCcCCCcccCchHHHHHHHHHHH
Confidence 6 588522 2222 4466777766
No 399
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=26.60 E-value=36 Score=27.83 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|++||+|+.. | .++..+++.+++ .|+++..++-
T Consensus 1 m~k~ilI~g~---g---~~~~~~~~a~~~-~G~~vv~v~~ 33 (451)
T 1ulz_A 1 MVNKVLVANR---G---EIAVRIIRACKE-LGIPTVAIYN 33 (451)
T ss_dssp CCSSEEECCC---H---HHHHHHHHHHHH-HTCCEEEEEC
T ss_pred CCceEEEECC---c---HHHHHHHHHHHH-cCCeEEEEec
Confidence 8888998742 2 356677777887 7988877764
No 400
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=26.39 E-value=1.6e+02 Score=23.07 Aligned_cols=82 Identities=16% Similarity=0.024 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHHhhccCCceEEEEEccCCCcH-HHHhhc-CC-CCCCCC-CCc--CChhhhccCCeeEEeccccCCcch
Q 028917 14 GHVETMAREVQRGANSVLGVEATLWQVPETLSS-VILQKM-KA-PPKTND-VPV--IRPHQLKEADGFLFGFPSRFGVMA 87 (202)
Q Consensus 14 G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~-~~~~~~-~~-~~~~~~-~~~--~~~~~l~~ad~ii~gsP~y~g~~~ 87 (202)
|-|-.+...+++.+.+ .|.+|..+.-...... ..+... .. ... -| +.+ .....+..+|.||..+..|.....
T Consensus 12 GatG~iG~~l~~~L~~-~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~-~D~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~ 89 (352)
T 1xgk_A 12 GATGRQGASLIRVAAA-VGHHVRAQVHSLKGLIAEELQAIPNVTLFQ-GPLLNNVPLMDTLFEGAHLAFINTTSQAGDEI 89 (352)
T ss_dssp STTSHHHHHHHHHHHH-TTCCEEEEESCSCSHHHHHHHTSTTEEEEE-SCCTTCHHHHHHHHTTCSEEEECCCSTTSCHH
T ss_pred CCCCHHHHHHHHHHHh-CCCEEEEEECCCChhhHHHHhhcCCcEEEE-CCccCCHHHHHHHHhcCCEEEEcCCCCCcHHH
Confidence 4444566666666666 6777777654332110 111110 00 000 12 211 123446789999977765533322
Q ss_pred HHHHHHHHhh
Q 028917 88 AQCKAFFDAT 97 (202)
Q Consensus 88 ~~~k~fld~~ 97 (202)
...+++++..
T Consensus 90 ~~~~~l~~aa 99 (352)
T 1xgk_A 90 AIGKDLADAA 99 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3336666655
No 401
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=26.15 E-value=50 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=22.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
||+| +|-|--+...+.+.|.+ .|.+|..+.
T Consensus 2 kILV-----TGatGfIG~~L~~~L~~-~G~~V~~l~ 31 (298)
T 4b4o_A 2 RVLV-----GGGTGFIGTALTQLLNA-RGHEVTLVS 31 (298)
T ss_dssp EEEE-----ETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred EEEE-----ECCCCHHHHHHHHHHHH-CCCEEEEEE
Confidence 7877 45555677888888888 898887764
No 402
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=26.12 E-value=1e+02 Score=20.08 Aligned_cols=40 Identities=15% Similarity=-0.028 Sum_probs=26.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|+++|++.+. .+-++..+++...+-++. .+.++.++.+.+
T Consensus 4 ~~~~ILv~~D-~s~~s~~al~~A~~la~~-~~a~l~ll~v~~ 43 (146)
T 3s3t_A 4 RYTNILVPVD-SSDAAQAAFTEAVNIAQR-HQANLTALYVVD 43 (146)
T ss_dssp CCCEEEEECC-SSHHHHHHHHHHHHHHHH-HTCEEEEEEEEE
T ss_pred ccceEEEEcC-CCHHHHHHHHHHHHHHHh-cCCEEEEEEEec
Confidence 4556777652 334566777777666665 677888888754
No 403
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=25.93 E-value=1.4e+02 Score=21.63 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=29.4
Q ss_pred ceEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
..|.++..+. +.....+.+.+.+.+++ .|.++.+++...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 42 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARA-RGYQLLIASSDD 42 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHH-TTCEEEEEECTT
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 3566776554 34678899999999999 899988877654
No 404
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=25.92 E-value=1.7e+02 Score=20.26 Aligned_cols=51 Identities=10% Similarity=-0.038 Sum_probs=28.6
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
..-+..+|++|+....-...-...+..|+..+..........+.++.++++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~n 125 (207)
T 1vg8_A 75 VAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125 (207)
T ss_dssp CGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEE
T ss_pred HHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 455788999999876544333334455555553211111124677777766
No 405
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=25.87 E-value=62 Score=26.36 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=29.4
Q ss_pred ceEEEEEecCCC--hHHHHHHHHHHHhhcc-CCceEEEEEccC
Q 028917 3 TKIYIVYYSLYG--HVETMAREVQRGANSV-LGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G--~T~~la~~i~~~~~~~-~g~~v~~~~l~~ 42 (202)
|||+|.-.|=.| ....++++|++++++. ..+++..+.+.|
T Consensus 4 MkiviApDsFKgsLsA~eaa~ai~~G~~~~~p~a~~~~~P~AD 46 (383)
T 3cwc_A 4 MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLAD 46 (383)
T ss_dssp CEEEECCCCBTTSCCHHHHHHHHHHHHHTTCTTSEEEECCCCC
T ss_pred ceEEEEecCCCCCcCHHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 489998777544 5789999999999873 345666666665
No 406
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.79 E-value=1.7e+02 Score=21.85 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=28.4
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.|.++..+. +.....+.+.+.+.+++ .|.++.+++...
T Consensus 17 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 55 (303)
T 3kke_A 17 TIGLIVPDVNNAVFADMFSGVQMAASG-HSTDVLLGQIDA 55 (303)
T ss_dssp CEEEEESCTTSTTHHHHHHHHHHHHHH-TTCCEEEEECCS
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 366665443 45678899999999999 899988877654
No 407
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=25.72 E-value=46 Score=23.08 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=9.9
Q ss_pred ccCCcchHHHHHHHHhhh
Q 028917 81 SRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 81 ~y~g~~~~~~k~fld~~~ 98 (202)
.|+++++..+|.|++.+.
T Consensus 15 ~~~~~m~~~Lq~~L~~ll 32 (143)
T 3cpt_A 15 LYFQGSADDLKRFLYKKL 32 (143)
T ss_dssp -------CHHHHHHHHHG
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 489999999999998875
No 408
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Probab=25.71 E-value=1.2e+02 Score=21.25 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=26.8
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|+.||..|.+-.-...+=.++.++.. .|.+|+++-.-.
T Consensus 5 ~kl~II~~sG~~dka~~a~ilA~~AaA-~G~eV~iFfTf~ 43 (160)
T 3pnx_A 5 KKMNLLLFSGDYDKALASLIIANAARE-MEIEVTIFCAFW 43 (160)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHH-TTCEEEEEECGG
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHHHH-cCCCEEEEEeeh
Confidence 468888888654433444456677777 899999987643
No 409
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=25.66 E-value=1e+02 Score=24.37 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=23.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||+|+.+ | .++..+++.+++ .|.++..++...
T Consensus 2 ~~Ililg~---g---~~g~~~~~a~~~-~G~~v~~~~~~~ 34 (380)
T 3ax6_A 2 KKIGIIGG---G---QLGKMMTLEAKK-MGFYVIVLDPTP 34 (380)
T ss_dssp CEEEEECC---S---HHHHHHHHHHHH-TTCEEEEEESST
T ss_pred CEEEEECC---C---HHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 48888864 3 345667777877 798888877653
No 410
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=25.64 E-value=51 Score=25.35 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=22.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|| +|+| +|-|-.+...+++.|.+ .|.+|..++-
T Consensus 1 M~-~vlV-----TGatG~iG~~l~~~L~~-~g~~V~~~~r 33 (347)
T 1orr_A 1 MA-KLLI-----TGGCGFLGSNLASFALS-QGIDLIVFDN 33 (347)
T ss_dssp -C-EEEE-----ETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred Cc-EEEE-----eCCCchhHHHHHHHHHh-CCCEEEEEeC
Confidence 54 6666 35555677777777777 7888887764
No 411
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=25.62 E-value=1.8e+02 Score=20.56 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=26.7
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+.++++|.+ +|.|. +++.+++.+.. .+..+..++..+
T Consensus 53 ~~~ll~G~~G~GKT~-la~~l~~~~~~-~~~~~~~~~~~~ 90 (242)
T 3bos_A 53 QAIYLWGPVKSGRTH-LIHAACARANE-LERRSFYIPLGI 90 (242)
T ss_dssp SEEEEECSTTSSHHH-HHHHHHHHHHH-TTCCEEEEEGGG
T ss_pred CeEEEECCCCCCHHH-HHHHHHHHHHH-cCCeEEEEEHHH
Confidence 456778766 78876 67788888776 677777777655
No 412
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=25.45 E-value=1.6e+02 Score=20.68 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=31.2
Q ss_pred ceEEEEEecCCC-hHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 3 TKIYIVYYSLYG-HVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 3 ~kiliiy~S~~G-~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
.||.||...=+- -|+.|.+-..+.+.+ .|.+++++.++-.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~-~G~~i~v~~VPGa 53 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDE-AGATYDVVTVPGA 53 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHH-TTCEEEEEEESSG
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCeEEEECCcH
Confidence 378888755443 488999999999988 8888888888764
No 413
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=25.42 E-value=53 Score=25.16 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
|| +|+| +|-|-.+...+++.|.+ .|.+|..++-
T Consensus 1 M~-~ilV-----tGatG~iG~~l~~~L~~-~g~~V~~~~r 33 (330)
T 2c20_A 1 MN-SILI-----CGGAGYIGSHAVKKLVD-EGLSVVVVDN 33 (330)
T ss_dssp -C-EEEE-----ETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred CC-EEEE-----ECCCcHHHHHHHHHHHh-CCCEEEEEeC
Confidence 54 7766 35555677777777777 7888877654
No 414
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=25.36 E-value=1e+02 Score=26.61 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=27.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.+++.+.+.....+|+.|++.+++ .|+++++..+.
T Consensus 412 l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 447 (621)
T 2grv_A 412 IVLGVASNDPTSVAVANTAADQLRN-VGIDASVLALD 447 (621)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred EEEEeCCCChHHHHHHHHHHHHHHh-cCCEEEEEecC
Confidence 4454544444567899999999999 89999887664
No 415
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=25.35 E-value=1.4e+02 Score=20.20 Aligned_cols=56 Identities=13% Similarity=-0.077 Sum_probs=31.0
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
...|.+++..|- ..++.. ++.+.. .|-+..++ ..+. . ..++.+.+...|+.+++..
T Consensus 69 ~~~Dlvii~vp~--~~v~~v----~~~~~~-------~g~~~i~i-~~~~---~----~~~l~~~a~~~Gi~~igpn 124 (145)
T 2duw_A 69 EKVDMVDVFRNS--EAAWGV----AQEAIA-------IGAKTLWL-QLGV---I----NEQAAVLAREAGLSVVMDR 124 (145)
T ss_dssp SCCSEEECCSCS--THHHHH----HHHHHH-------HTCCEEEC-CTTC---C----CHHHHHHHHTTTCEEECSC
T ss_pred CCCCEEEEEeCH--HHHHHH----HHHHHH-------cCCCEEEE-cCCh---H----HHHHHHHHHHcCCEEEcCC
Confidence 468999999983 444444 444321 23223222 2222 1 2345567788899999743
No 416
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=25.32 E-value=37 Score=26.79 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=25.6
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
||||++.+...|+..-+. .+++.|.+ .|.+|+++.-
T Consensus 23 MRIL~~~~p~~GHv~P~l-~LA~~L~~-rGh~Vt~~t~ 58 (400)
T 4amg_A 23 MRALFITSPGLSHILPTV-PLAQALRA-LGHEVRYATG 58 (400)
T ss_dssp CEEEEECCSSHHHHGGGH-HHHHHHHH-TTCEEEEEEC
T ss_pred CeEEEECCCchhHHHHHH-HHHHHHHH-CCCEEEEEeC
Confidence 489877544468766554 56777777 8999998753
No 417
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=25.20 E-value=1.1e+02 Score=19.83 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=20.1
Q ss_pred EEEEecCC-ChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 6 YIVYYSLY-GHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 6 liiy~S~~-G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||++++ +.+++. ..+ +++ .|++++.+++.+
T Consensus 7 i~iY~~~~C~~C~ka-~~~---L~~-~gi~y~~~di~~ 39 (120)
T 2kok_A 7 VTIYGIKNCDTMKKA-RIW---LED-HGIDYTFHDYKK 39 (120)
T ss_dssp EEEEECSSCHHHHHH-HHH---HHH-HTCCEEEEEHHH
T ss_pred EEEEECCCChHHHHH-HHH---HHH-cCCcEEEEeeeC
Confidence 45788876 444433 333 334 588899999864
No 418
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=25.12 E-value=1.7e+02 Score=20.17 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=29.4
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+.++|++|+....-...-...+..++..+.. .....+.++.++++
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~---~~~~~~~piilv~N 138 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ---EDELRDAVLLVFAN 138 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc---ccccCCCeEEEEEE
Confidence 3457899999998776544323445555555431 12345778777776
No 419
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=25.11 E-value=38 Score=23.88 Aligned_cols=39 Identities=23% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEE--EEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEAT--LWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~--~~~l~~ 42 (202)
|+.||.||...=+. ..|.+-..+.+++ .|++.+ ++.++-
T Consensus 1 m~~ri~IV~arfn~--~~Ll~gA~~~L~~-~G~~~~i~~~~VPG 41 (156)
T 2b99_A 1 MTKKVGIVDTTFAR--VDMASIAIKKLKE-LSPNIKIIRKTVPG 41 (156)
T ss_dssp -CCEEEEEEESSCS--SCCHHHHHHHHHH-HCTTCEEEEEEESS
T ss_pred CCcEEEEEEEecch--HHHHHHHHHHHHH-cCCCCeEEEEECCc
Confidence 77799998855444 7788888888887 676433 356654
No 420
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=24.93 E-value=1.3e+02 Score=19.68 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=25.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.++|++-+ ..+.++...++...+-++. .+.++.++.+.+
T Consensus 6 ~~~ILv~v-D~s~~s~~al~~a~~la~~-~~a~l~ll~v~~ 44 (150)
T 3tnj_A 6 YHHILLAV-DFSSEDSQVVQKVRNLASQ-IGARLSLIHVLD 44 (150)
T ss_dssp CSEEEEEC-CCSTTHHHHHHHHHHHHHH-HTCEEEEEEEEC
T ss_pred cceEEEEe-CCCHHHHHHHHHHHHHHhh-cCCEEEEEEEEc
Confidence 34576655 2234466677777766666 678888888865
No 421
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=24.83 E-value=1.4e+02 Score=19.88 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=17.7
Q ss_pred ccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 70 KEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 70 ~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
.++|.|.+.+-. +.....++.+++.+.
T Consensus 53 ~~~d~v~lS~~~--~~~~~~~~~~i~~l~ 79 (137)
T 1ccw_A 53 TKADAILVSSLY--GQGEIDCKGLRQKCD 79 (137)
T ss_dssp HTCSEEEEEECS--STHHHHHTTHHHHHH
T ss_pred cCCCEEEEEecC--cCcHHHHHHHHHHHH
Confidence 456666665544 455567888888885
No 422
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=24.69 E-value=2.4e+02 Score=21.67 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=37.6
Q ss_pred cCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecCC
Q 028917 71 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPLG 146 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~~ 146 (202)
+.|.+|+.+|-- .....++.+.. .|.+..++.+.|-+ +.....+.+..+..|+.+++..
T Consensus 70 ~~Dv~ii~vp~~------~~~~~v~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~A~~~gi~viGPN 128 (294)
T 2yv1_A 70 DANASVIFVPAP------FAKDAVFEAID-------AGIELIVVITEHIP----VHDTMEFVNYAEDVGVKIIGPN 128 (294)
T ss_dssp CCCEEEECCCHH------HHHHHHHHHHH-------TTCSEEEECCSCCC----HHHHHHHHHHHHHHTCEEECSS
T ss_pred CCCEEEEccCHH------HHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEEEcCC
Confidence 689999998863 44555555431 57776565555532 2224566777788899888643
No 423
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=24.69 E-value=67 Score=23.73 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=22.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
|. |+++|.+ -+.-+..++++.+.+ .|.+|.+.+...
T Consensus 21 m~-k~vlITG----as~gIG~~la~~l~~-~G~~V~~~~r~~ 56 (251)
T 3orf_A 21 MS-KNILVLG----GSGALGAEVVKFFKS-KSWNTISIDFRE 56 (251)
T ss_dssp -C-CEEEEET----TTSHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred cC-CEEEEEC----CCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 44 5555543 344567777777777 788888777654
No 424
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=24.69 E-value=1.7e+02 Score=19.98 Aligned_cols=51 Identities=14% Similarity=0.022 Sum_probs=28.8
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhh-hcc---CCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWA-SQA---LAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~-~~~---l~gK~~~~~~t 116 (202)
..-+..+|++|+..-.-...-...++.++..+..... ... ..+.++.++++
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~N 135 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFAN 135 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEE
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEE
Confidence 3446789999998776655433445556555532100 000 12777777766
No 425
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=24.21 E-value=1.2e+02 Score=25.13 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.+++.+.......+|+.|++.+++ .|+++++..+.
T Consensus 342 l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 377 (502)
T 2noo_A 342 IELSFIGTDALSKSMAEIIQADMRQ-IGADVSLIGEE 377 (502)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHT-TTCEEEEEEEC
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHh-cCcEEEEEecc
Confidence 3444434444567899999999999 89999876653
No 426
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=24.19 E-value=45 Score=25.55 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=34.3
Q ss_pred eEEEE--EecC-CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcC----ChhhhccCCeeE
Q 028917 4 KIYIV--YYSL-YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVI----RPHQLKEADGFL 76 (202)
Q Consensus 4 kilii--y~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~ad~ii 76 (202)
+|.|| |++. .+|-..+.+++.....+ .+++++++..... ++... ..+.+.++|+||
T Consensus 10 ~Iaivg~y~~~~~dny~S~~~aL~~~g~~-~~~~v~v~~~~~~----------------~~~~~~~~~~~~~~~~~dgii 72 (273)
T 2w7t_A 10 RIAFVGKYLQDAGDTYFSVLQCFEHCQIA-LQVRLDILYVDSE----------------ELEGPNADEARKALLGCDGIF 72 (273)
T ss_dssp EEEEEECCHHHHTTTTHHHHHHHHHHHHH-HTCCEEEEEEEGG----------------GGSSTTTHHHHHHHHTCSEEE
T ss_pred EEEEEeCCCcCCchHHHHHHHHHHHHHHh-cCCceEEeccChh----------------hcccccchhHHHHHhhCCEEE
Confidence 67777 3211 34666666666666655 5667777766541 00000 115678999999
Q ss_pred Eec
Q 028917 77 FGF 79 (202)
Q Consensus 77 ~gs 79 (202)
|.-
T Consensus 73 l~G 75 (273)
T 2w7t_A 73 VPG 75 (273)
T ss_dssp ECC
T ss_pred ecC
Confidence 953
No 427
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=24.12 E-value=76 Score=22.00 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=5.0
Q ss_pred CCceEEEEEe
Q 028917 1 MATKIYIVYY 10 (202)
Q Consensus 1 M~~kiliiy~ 10 (202)
||+.|+.+-|
T Consensus 1 MmptIl~lHG 10 (202)
T 4fle_A 1 MMSTLLYIHG 10 (202)
T ss_dssp --CEEEEECC
T ss_pred CCcEEEEeCC
Confidence 7866666654
No 428
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=24.06 E-value=37 Score=25.75 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=21.1
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccC--CceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVL--GVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~--g~~v~~~~l~ 41 (202)
|+++|+|. |-|-.+...+++.|.+ . |.+|..++-.
T Consensus 1 M~~~vlVt-----GatG~iG~~l~~~L~~-~~~g~~V~~~~r~ 37 (312)
T 2yy7_A 1 MNPKILII-----GACGQIGTELTQKLRK-LYGTENVIASDIR 37 (312)
T ss_dssp CCCCEEEE-----TTTSHHHHHHHHHHHH-HHCGGGEEEEESC
T ss_pred CCceEEEE-----CCccHHHHHHHHHHHH-hCCCCEEEEEcCC
Confidence 66677763 4444455566666655 4 6778777654
No 429
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=24.03 E-value=54 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=16.3
Q ss_pred CceEEEEEecCCChH--HHHHHHHHHHh
Q 028917 2 ATKIYIVYYSLYGHV--ETMAREVQRGA 27 (202)
Q Consensus 2 ~~kiliiy~S~~G~T--~~la~~i~~~~ 27 (202)
|+|||.|. +||+ .-+|+.+.+.+
T Consensus 18 M~kVLFVC---tGNiCRSpmAE~i~r~~ 42 (173)
T 4etm_A 18 MISVLFVC---LGNICRSPMAEAIFRDL 42 (173)
T ss_dssp CEEEEEEE---SSSSSHHHHHHHHHHHH
T ss_pred ccEEEEEe---CCcchhhHHHHHHHHHH
Confidence 34899988 6664 56888777665
No 430
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=23.98 E-value=36 Score=27.93 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
||+||+|+. .| .++..+++.+++ .|+++..++-.
T Consensus 5 ~~k~ILI~g---~g---~~~~~i~~a~~~-~G~~vv~v~~~ 38 (461)
T 2dzd_A 5 RIRKVLVAN---RG---EIAIRVFRACTE-LGIRTVAIYSK 38 (461)
T ss_dssp CCSEEEECS---CH---HHHHHHHHHHHH-HTCEEEEEECG
T ss_pred cCcEEEEEC---Cc---HHHHHHHHHHHH-cCCEEEEEECC
Confidence 566788862 12 256677788888 89988877654
No 431
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=23.87 E-value=1.1e+02 Score=23.46 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=20.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+||.|| + .|+ |...++..+.. .|.+|.++|..+
T Consensus 16 ~~I~VI-G--~G~---mG~~iA~~la~-~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVI-G--GGL---MGAGIAQVAAA-TGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEE-C--CSH---HHHHHHHHHHH-TTCEEEEECSCH
T ss_pred CEEEEE-C--CCH---HHHHHHHHHHh-CCCeEEEEECCH
Confidence 467665 3 343 44456666666 688899888753
No 432
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=23.67 E-value=1.1e+02 Score=24.16 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=41.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh----ccCCeeEE
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL----KEADGFLF 77 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~ad~ii~ 77 (202)
.+||.|| ..|+ |...++..+.+ .|.+|..++..... ............ ++ ..+.+ .++|.||+
T Consensus 8 ~~kIgII---G~G~---mG~slA~~L~~-~G~~V~~~dr~~~~-~~~a~~~G~~~~-~~----~~e~~~~a~~~aDlVil 74 (341)
T 3ktd_A 8 SRPVCIL---GLGL---IGGSLLRDLHA-ANHSVFGYNRSRSG-AKSAVDEGFDVS-AD----LEATLQRAAAEDALIVL 74 (341)
T ss_dssp SSCEEEE---CCSH---HHHHHHHHHHH-TTCCEEEECSCHHH-HHHHHHTTCCEE-SC----HHHHHHHHHHTTCEEEE
T ss_pred CCEEEEE---eecH---HHHHHHHHHHH-CCCEEEEEeCCHHH-HHHHHHcCCeee-CC----HHHHHHhcccCCCEEEE
Confidence 3467776 3454 66677777777 78888887754310 011111110000 00 11223 34799999
Q ss_pred eccccCCcchHHHHHHHHhhh
Q 028917 78 GFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 78 gsP~y~g~~~~~~k~fld~~~ 98 (202)
..|. ..+...++.+.
T Consensus 75 avP~------~~~~~vl~~l~ 89 (341)
T 3ktd_A 75 AVPM------TAIDSLLDAVH 89 (341)
T ss_dssp CSCH------HHHHHHHHHHH
T ss_pred eCCH------HHHHHHHHHHH
Confidence 9994 34556666653
No 433
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=23.66 E-value=1.9e+02 Score=20.06 Aligned_cols=68 Identities=4% Similarity=-0.102 Sum_probs=43.8
Q ss_pred eEEEEE-ecC----CChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 4 KIYIVY-YSL----YGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 4 kiliiy-~S~----~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
|++|+- +.. .|---.+++.+.+... ....++++|....-+ .....+.++|.+||.
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~--~p~~v~vid~gt~~~------------------~l~~~l~~~d~lIiV 61 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYI--LPDYVEILDGGTAGM------------------ELLGDMANRDHLIIA 61 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEE--CCTTEEEEEEETCCG------------------GGHHHHSSCSEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCC--CCCCeEEEECCCCHH------------------HHHHHHhCCCEEEEE
Confidence 566664 443 3556677777776532 122478888765211 246678899999998
Q ss_pred ccc-cCCcchHHHH
Q 028917 79 FPS-RFGVMAAQCK 91 (202)
Q Consensus 79 sP~-y~g~~~~~~k 91 (202)
=-+ ..+.-|+.+.
T Consensus 62 DA~~~~g~~PGti~ 75 (162)
T 1cfz_A 62 DAIVSKKNAPGTMM 75 (162)
T ss_dssp EECCSSCSCTTCEE
T ss_pred EehhhcCCCCCEEE
Confidence 877 7777777643
No 434
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=23.58 E-value=1.2e+02 Score=25.20 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=26.0
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.+++.+.+.....+|+.|++.+++ .|+++++..+.
T Consensus 362 l~l~~~~~~~~~~~~a~~iq~~l~~-iGI~v~i~~~~ 397 (520)
T 1xoc_A 362 FTLKTNQGNKVREDIAVVVQEQLKK-IGIEVKTQIVE 397 (520)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHT-TTCEEEEEEEC
T ss_pred EEEEecCCChHHHHHHHHHHHHHHh-cCCEEEEEecC
Confidence 3344433334567899999999999 89999887654
No 435
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=23.49 E-value=38 Score=25.92 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=18.7
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhh
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATY 98 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~ 98 (202)
...+..+|.||..++... + ...+++++.+.
T Consensus 74 ~~a~~~~d~vi~~a~~~~--~-~~~~~l~~aa~ 103 (318)
T 2r6j_A 74 VELMKKVDVVISALAFPQ--I-LDQFKILEAIK 103 (318)
T ss_dssp HHHHTTCSEEEECCCGGG--S-TTHHHHHHHHH
T ss_pred HHHHcCCCEEEECCchhh--h-HHHHHHHHHHH
Confidence 455678999998876532 1 12466676653
No 436
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=23.47 E-value=98 Score=19.20 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=20.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCC-ceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLG-VEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g-~~v~~~~l~ 41 (202)
|+++|+|+ |. |. +...+++.+.+ .| .++.+++..
T Consensus 4 ~~~~v~I~-G~--G~---iG~~~~~~l~~-~g~~~v~~~~r~ 38 (118)
T 3ic5_A 4 MRWNICVV-GA--GK---IGQMIAALLKT-SSNYSVTVADHD 38 (118)
T ss_dssp TCEEEEEE-CC--SH---HHHHHHHHHHH-CSSEEEEEEESC
T ss_pred CcCeEEEE-CC--CH---HHHHHHHHHHh-CCCceEEEEeCC
Confidence 45567665 43 44 45556666666 67 677776654
No 437
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.31 E-value=2.4e+02 Score=21.18 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=28.0
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+.+..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 42 (330)
T 3uug_A 5 SVGIAMPTKSSARWIDDGNNIVKQLQE-AGYKTDLQYAD 42 (330)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHHH-TTCEEEEEECT
T ss_pred EEEEEeCCCcchHHHHHHHHHHHHHHH-cCCEEEEeeCC
Confidence 466666554 45677899999999999 89988887743
No 438
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=23.15 E-value=1.4e+02 Score=21.87 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=28.6
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+++...
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~ 48 (277)
T 3e61_A 10 LIGLLLPDMSNPFFTLIARGVEDVALA-HGYQVLIGNSDN 48 (277)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHHHHH-TTCCEEEEECTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 466666554 45678899999999999 899888877654
No 439
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=23.14 E-value=1.8e+02 Score=19.81 Aligned_cols=79 Identities=8% Similarity=-0.044 Sum_probs=42.1
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCC-cHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEeccc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETL-SSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPS 81 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~ 81 (202)
.+|+|+.++ .-.+-+++.+..-+.+ ...+..+++.... +....+. +. ...+.+.+.|+|++-+=.
T Consensus 2 igiii~sHg--~~A~gl~~~~~~i~G~--~~~i~av~~~~~~~~~~~~~~---------i~-~~i~~~~~~~gvlvLtDl 67 (150)
T 3ipr_A 2 LGIVIATHG--ALSDGAKDAATVIMGA--TENIETVNLNSGDDVQALGGQ---------IK-TAIENVQQGDGVLVMVDL 67 (150)
T ss_dssp CEEEEEEET--THHHHHHHHHHHHHSC--CCSEEEEEECTTCCHHHHHHH---------HH-HHHHHHCSSSCEEEEESS
T ss_pred CEEEEEECc--HHHHHHHHHHHHHcCC--CCCEEEEEecCCCCHHHHHHH---------HH-HHHHhcCCCCCEEEEEeC
Confidence 378887655 2223333333333322 1347777776432 2211110 00 124556677999999999
Q ss_pred cCCcchHHHHHHHH
Q 028917 82 RFGVMAAQCKAFFD 95 (202)
Q Consensus 82 y~g~~~~~~k~fld 95 (202)
|.|++.-....++.
T Consensus 68 ~GGSp~n~a~~~~~ 81 (150)
T 3ipr_A 68 LSASPYNQAVLVIN 81 (150)
T ss_dssp TTSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH
Confidence 99987665554443
No 440
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}
Probab=28.80 E-value=17 Score=26.41 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=13.1
Q ss_pred hhhccCCeeEEecccc
Q 028917 67 HQLKEADGFLFGFPSR 82 (202)
Q Consensus 67 ~~l~~ad~ii~gsP~y 82 (202)
+.+.++|.||+..|.+
T Consensus 69 ~~~~~aDvVilav~~~ 84 (201)
T 2yjz_A 69 EAASRSDVIVLAVHRE 84 (201)
Confidence 4467899999999965
No 441
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=23.03 E-value=2e+02 Score=22.07 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=18.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEE
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATL 37 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~ 37 (202)
||.|++-...- ++.+.+.+++ .|+++.+
T Consensus 31 ki~iv~~~~~~-----~~~l~~~L~~-~g~~v~~ 58 (278)
T 1z0s_A 31 RAAVVYKTDGH-----VKRIEEALKR-LEVEVEL 58 (278)
T ss_dssp EEEEEESSSTT-----HHHHHHHHHH-TTCEEEE
T ss_pred EEEEEeCCcHH-----HHHHHHHHHH-CCCEEEE
Confidence 77777632211 7788888888 8887754
No 442
>1tuw_A Tetracenomycin polyketide synthesis protein TCMI; dimeric ??? ferredoxin-like fold tetracenomycin C biosynthes unknown function; 1.90A {Streptomyces glaucescens} SCOP: d.58.4.8
Probab=23.01 E-value=90 Score=20.51 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=21.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHH
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRG 26 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~ 26 (202)
||.+.+||+-=.-|+...+|+.+++-
T Consensus 1 mM~r~lIVaRm~pg~~~~VA~iFae~ 26 (109)
T 1tuw_A 1 MAYRALMVLRMDPADAEHVAAAFAEH 26 (109)
T ss_dssp -CEEEEEEEEECGGGHHHHHHHHHHH
T ss_pred CCceEEEEEeeCCCCHHHHHHHHHhc
Confidence 78889999866689999999998876
No 443
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}
Probab=22.96 E-value=1e+02 Score=25.68 Aligned_cols=63 Identities=16% Similarity=-0.009 Sum_probs=35.5
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFP 80 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP 80 (202)
|||+| +|-|-.+...+++.|.+ .|.+|..+.-....... + .+ |..+...+.+..+|.||-...
T Consensus 148 m~VLV-----TGatG~IG~~l~~~L~~-~G~~V~~l~R~~~~~~~-v---~~-----d~~~~~~~~l~~~D~Vih~A~ 210 (516)
T 3oh8_A 148 LTVAI-----TGSRGLVGRALTAQLQT-GGHEVIQLVRKEPKPGK-R---FW-----DPLNPASDLLDGADVLVHLAG 210 (516)
T ss_dssp CEEEE-----ESTTSHHHHHHHHHHHH-TTCEEEEEESSSCCTTC-E---EC-----CTTSCCTTTTTTCSEEEECCC
T ss_pred CEEEE-----ECCCCHHHHHHHHHHHH-CCCEEEEEECCCCCccc-e---ee-----cccchhHHhcCCCCEEEECCC
Confidence 36766 34455577777777777 78888776654321100 0 00 111123455678999997654
No 444
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=22.94 E-value=1.9e+02 Score=19.76 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=27.6
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccC--CCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQAL--AGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l--~gK~~~~~~t 116 (202)
...+..+|++|+....-...-...++.++..+.. ...+ .++++.++++
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~~~piilv~n 134 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLN---HPDIKHRRIPILFFAN 134 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHH---STTTTTSCCCEEEEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHh---ChhhccCCCeEEEEEe
Confidence 4557899999998765443222334445544421 1122 5777777766
No 445
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=22.88 E-value=2.1e+02 Score=20.25 Aligned_cols=46 Identities=11% Similarity=0.068 Sum_probs=28.7
Q ss_pred hhhhccCCeeEEeccccCCcchHH-HHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQ-CKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~-~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+..+|++|+..-.-...-... ++.|++.+.. ...+.++.++++
T Consensus 93 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~-----~~~~~piilv~n 139 (214)
T 3q3j_B 93 PLCYSDSDAVLLCFDISRPETVDSALKKWRTEILD-----YCPSTRVLLIGC 139 (214)
T ss_dssp GGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHH-----HCTTSEEEEEEE
T ss_pred HHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHH-----hCCCCCEEEEEE
Confidence 345788999999877655332222 4566666642 235677777766
No 446
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=22.87 E-value=1e+02 Score=24.88 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=24.3
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
++||+|+-+. .++..++..+++ .|+++..++ ..
T Consensus 24 ~~~I~ilGgG------~lg~~l~~aa~~-lG~~v~~~d-~~ 56 (403)
T 3k5i_A 24 SRKVGVLGGG------QLGRMLVESANR-LNIQVNVLD-AD 56 (403)
T ss_dssp CCEEEEECCS------HHHHHHHHHHHH-HTCEEEEEE-ST
T ss_pred CCEEEEECCC------HHHHHHHHHHHH-CCCEEEEEE-CC
Confidence 3467777533 477788888888 899999988 54
No 447
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=22.85 E-value=1.9e+02 Score=22.55 Aligned_cols=55 Identities=11% Similarity=0.196 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCc-CChhhhccCCeeEEecccc
Q 028917 19 MAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPV-IRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 19 la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ad~ii~gsP~y 82 (202)
+...+++.+.. .|.+|..++........ .... +... ...+.+.++|.|++..|.-
T Consensus 166 iG~~iA~~l~~-~G~~V~~~d~~~~~~~~-~~~~-------g~~~~~l~e~l~~aDvVi~~vp~~ 221 (330)
T 2gcg_A 166 IGQAIARRLKP-FGVQRFLYTGRQPRPEE-AAEF-------QAEFVSTPELAAQSDFIVVACSLT 221 (330)
T ss_dssp HHHHHHHHHGG-GTCCEEEEESSSCCHHH-HHTT-------TCEECCHHHHHHHCSEEEECCCCC
T ss_pred HHHHHHHHHHH-CCCEEEEECCCCcchhH-HHhc-------CceeCCHHHHHhhCCEEEEeCCCC
Confidence 66677777777 78888888864321111 1100 0100 1234578999999999975
No 448
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=22.81 E-value=96 Score=21.88 Aligned_cols=29 Identities=7% Similarity=-0.130 Sum_probs=19.7
Q ss_pred eEEEEEecCCCh---HHHHHHHHHHHhhccCCc
Q 028917 4 KIYIVYYSLYGH---VETMAREVQRGANSVLGV 33 (202)
Q Consensus 4 kiliiy~S~~G~---T~~la~~i~~~~~~~~g~ 33 (202)
+|.|+-+|..++ -...|+.+.+.+.+ .|.
T Consensus 3 ~V~V~gs~~~~~~~~~~~~A~~lg~~La~-~g~ 34 (171)
T 1weh_A 3 LLAVFVSSRLSPEDPLYARWVRYGEVLAE-EGF 34 (171)
T ss_dssp EEEEECCSSCCTTSHHHHHHHHHHHHHHH-TTE
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHHHHHHH-CCC
Confidence 566554444443 57788999999987 663
No 449
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=22.66 E-value=74 Score=23.58 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=37.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCC-ceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEecccc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLG-VEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFGFPSR 82 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g-~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~gsP~y 82 (202)
||.|| ..|+ +...++..+.+ .| .+|.+++.................. .+ ..+.+ ++|.||+.+|.+
T Consensus 2 ~i~ii---G~G~---mG~~~a~~l~~-~g~~~v~~~~r~~~~~~~~~~~~g~~~~-~~----~~~~~-~~D~vi~~v~~~ 68 (263)
T 1yqg_A 2 NVYFL---GGGN---MAAAVAGGLVK-QGGYRIYIANRGAEKRERLEKELGVETS-AT----LPELH-SDDVLILAVKPQ 68 (263)
T ss_dssp EEEEE---CCSH---HHHHHHHHHHH-HCSCEEEEECSSHHHHHHHHHHTCCEEE-SS----CCCCC-TTSEEEECSCHH
T ss_pred EEEEE---CchH---HHHHHHHHHHH-CCCCeEEEECCCHHHHHHHHHhcCCEEe-CC----HHHHh-cCCEEEEEeCch
Confidence 67776 2454 44555566655 57 6777766432100111111010000 11 12335 899999999943
Q ss_pred CCcchHHHHHHHHhh
Q 028917 83 FGVMAAQCKAFFDAT 97 (202)
Q Consensus 83 ~g~~~~~~k~fld~~ 97 (202)
.++..+..+
T Consensus 69 ------~~~~v~~~l 77 (263)
T 1yqg_A 69 ------DMEAACKNI 77 (263)
T ss_dssp ------HHHHHHTTC
T ss_pred ------hHHHHHHHh
Confidence 345555544
No 450
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=22.55 E-value=64 Score=19.94 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=16.6
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEE
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEAT 36 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~ 36 (202)
||+++.|...-..|-.+--.+++..++.. .|..++
T Consensus 1 mm~~~~V~V~lK~gVlDpqG~av~~al~~-LG~~v~ 35 (85)
T 1gtd_A 1 MKFMVEVRIRLKKGMLNPEAATIERALAL-LGYEVE 35 (85)
T ss_dssp -CEEEEEEEEECTTSCCHHHHHHHHHHHH-HTCCCE
T ss_pred CCeEEEEEEEECCCCcCcHHHHHHHHHHH-cCCChh
Confidence 67666554443445444444455555544 444433
No 451
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.54 E-value=2.4e+02 Score=20.89 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=27.6
Q ss_pred eEEEEEe----cC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYY----SL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~----S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.|.++.. +. +.....+.+.+.+.+++ .|.++.+.+..+
T Consensus 8 ~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 50 (294)
T 3qk7_A 8 AIALAYPSRPRVLNNSTFLEMISWIGIELGK-RGLDLLLIPDEP 50 (294)
T ss_dssp EEEEEEESCSGGGSCHHHHHHHHHHHHHHHH-TTCEEEEEEECT
T ss_pred eEEEEecCCCccccChhHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 4666665 22 34567889999999998 899888877653
No 452
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.47 E-value=1.3e+02 Score=20.86 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=19.1
Q ss_pred ceEEEEEecC--------CChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 3 TKIYIVYYSL--------YGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~--------~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
+++.||..+. +.|+.. +++.+++ .|+++..+.+
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~----l~~~l~~-~G~~v~~~~i 42 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLA----IREVLAG-GPFEVAAYEL 42 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHH----HHHHHTT-SSEEEEEEEE
T ss_pred cEEEEEEEcCcccCCCcccchHHH----HHHHHHH-CCCeEeEEEE
Confidence 4888777442 234444 4455666 7887765544
No 453
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=22.45 E-value=1.9e+02 Score=19.95 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=25.7
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+..+|++|+....-...-...++.|++.+.. ....+.++.++++
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~p~ilv~n 146 (199)
T 3l0i_B 100 SSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR----YASENVNKLLVGN 146 (199)
T ss_dssp CC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS----CC-CCSEEEEC-C
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH----hccCCCCEEEEEE
Confidence 4457889999998776654444455666666632 1123566655544
No 454
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=22.41 E-value=83 Score=22.82 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=22.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|..|+++|.+. +.-+..++++.+.+ .|.+|.+.+-.
T Consensus 1 m~~k~vlITGa----s~gIG~~~a~~l~~-~G~~V~~~~r~ 36 (236)
T 1ooe_A 1 MSSGKVIVYGG----KGALGSAILEFFKK-NGYTVLNIDLS 36 (236)
T ss_dssp -CCEEEEEETT----TSHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred CCCCEEEEECC----CcHHHHHHHHHHHH-CCCEEEEEecC
Confidence 55577776544 33466666777766 78887776654
No 455
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=22.39 E-value=2.3e+02 Score=20.65 Aligned_cols=37 Identities=5% Similarity=-0.009 Sum_probs=28.4
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+++..
T Consensus 7 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 44 (280)
T 3gyb_A 7 LIAVLIDDYSNPWFIDLIQSLSDVLTP-KGYRLSVIDSL 44 (280)
T ss_dssp EEEEEESCTTSGGGHHHHHHHHHHHGG-GTCEEEEECSS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 466666554 45678899999999999 89988887765
No 456
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=22.32 E-value=56 Score=26.81 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceE--EEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEA--TLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG 78 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g 78 (202)
|..+|+++- ..|=|..+.+.+.+.+.. .++++ +.+++.. ....... +.+|+...+.++++|++++|
T Consensus 6 ~~~~i~~i~--GDei~~e~~~~i~~v~~~-~~~~i~~~~~d~G~----~~~~~tg-----~~lp~etl~aik~~~v~lkG 73 (402)
T 4aoy_A 6 MKVPLVEMD--GDEMTRIIWRLIKENLLE-PYIELNTEYYDLGL----ENRDKTE-----DQVTIDAARAIQKYGVGVKC 73 (402)
T ss_dssp CSSCEEEEE--CCHHHHHHHHHHHHHHTT-TTEECCEEEEECCH----HHHHHHT-----THHHHHHHHHHHHHSEEEEC
T ss_pred ccCcEEEEC--CCchHHHHHHHHHHHHHh-cCCCeEEEEEeCCH----HHHHhhC-----CcCCHHHHHHHHHCCEEEEC
Confidence 333455553 357788888999888887 77654 4444432 1111000 11222346778899999987
Q ss_pred ---cccc-----------CCcchHHHHHHHHh
Q 028917 79 ---FPSR-----------FGVMAAQCKAFFDA 96 (202)
Q Consensus 79 ---sP~y-----------~g~~~~~~k~fld~ 96 (202)
+|.| |-++-..++.-||.
T Consensus 74 a~~tP~~~~~~~~~l~~~~~s~n~~LR~~Ldl 105 (402)
T 4aoy_A 74 ATITPNAQRVEEYNLKKMWKSPNGTIRAILDG 105 (402)
T ss_dssp CCCCCCHHHHHHTTCSSCCCCHHHHHHHHHTC
T ss_pred cccCCCccccccccccccccChHHHHHHHhCC
Confidence 5665 23344455666664
No 457
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=22.30 E-value=1.3e+02 Score=26.60 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=18.4
Q ss_pred eEEEE-EecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIV-YYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kilii-y~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|+|+ ++|. +|.. |++.+++ .|+.++++...
T Consensus 31 ~I~VLDfg~q--~~~l----iar~lre-~Gv~~~ivp~~ 62 (697)
T 2vxo_A 31 AVVILDAGAQ--YGKV----IDRRVRE-LFVQSEIFPLE 62 (697)
T ss_dssp CEEEEEEC----CHHH----HHHHHHH-TTCCEEEEETT
T ss_pred EEEEEECCCc--hHHH----HHHHHHH-CCCEEEEEECC
Confidence 57777 4443 3333 4556666 68888887754
No 458
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=22.20 E-value=1.6e+02 Score=20.04 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=23.7
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQV 40 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l 40 (202)
++++|.|-+ .|.| .+++.+++.+.+ .|..+..++.
T Consensus 2 ~~I~i~G~~GsGKs-T~~~~L~~~l~~-~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKS-TVLAKVKEILDN-QGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHH-HHHHHHHHHHHT-TTCCEEEEEH
T ss_pred eEEEEECCCCCCHH-HHHHHHHHHHHh-cCceEEEEEC
Confidence 455555554 7765 478888888887 6777777654
No 459
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=22.12 E-value=2.4e+02 Score=20.80 Aligned_cols=127 Identities=9% Similarity=-0.090 Sum_probs=56.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccC-CceEEEEEccCCCcHHHHhhcCCCCCCCCCCc--CChhhhccCCeeEEecc
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVL-GVEATLWQVPETLSSVILQKMKAPPKTNDVPV--IRPHQLKEADGFLFGFP 80 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~-g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ad~ii~gsP 80 (202)
||+|. |-|-.+...+++.+.+ . |.+|..+.-....... +.......-.-|+.+ .....+..+|.||..++
T Consensus 2 ~ilVt-----GatG~iG~~l~~~L~~-~~g~~V~~~~R~~~~~~~-~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 74 (289)
T 3e48_A 2 NIMLT-----GATGHLGTHITNQAIA-NHIDHFHIGVRNVEKVPD-DWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPS 74 (289)
T ss_dssp CEEEE-----TTTSHHHHHHHHHHHH-TTCTTEEEEESSGGGSCG-GGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred EEEEE-----cCCchHHHHHHHHHhh-CCCCcEEEEECCHHHHHH-hhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 66663 4444455666666665 4 7777776543210000 000000000012211 13445678999998876
Q ss_pred ccCCcc--hHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCC---ChHHHHHHHHHHHHHcCcEEe
Q 028917 81 SRFGVM--AAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGG---GQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 81 ~y~g~~--~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g---~~~~~l~~~~~~l~~~g~~vv 143 (202)
...... -...+++++.+.. -.-+.+..+++++.... ........+...+...|+.+.
T Consensus 75 ~~~~~~~~~~~~~~l~~aa~~------~gv~~iv~~Ss~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~ 136 (289)
T 3e48_A 75 IIHPSFKRIPEVENLVYAAKQ------SGVAHIIFIGYYADQHNNPFHMSPYFGYASRLLSTSGIDYT 136 (289)
T ss_dssp CCCSHHHHHHHHHHHHHHHHH------TTCCEEEEEEESCCSTTCCSTTHHHHHHHHHHHHHHCCEEE
T ss_pred CCccchhhHHHHHHHHHHHHH------cCCCEEEEEcccCCCCCCCCccchhHHHHHHHHHHcCCCEE
Confidence 543221 1223555555421 12245555555443211 111222344455566676654
No 460
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=21.99 E-value=2.7e+02 Score=21.29 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=36.7
Q ss_pred cCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEecC
Q 028917 71 EADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFVPL 145 (202)
Q Consensus 71 ~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv~~ 145 (202)
..|.+|+.+|- ......++.+.. .|.+..++.+.|-+ +.....+.+.....|+.+++.
T Consensus 64 ~~Dv~Ii~vp~------~~~~~~~~ea~~-------~Gi~~vVi~t~G~~----~~~~~~l~~~a~~~gi~vigP 121 (288)
T 1oi7_A 64 EVDASIIFVPA------PAAADAALEAAH-------AGIPLIVLITEGIP----TLDMVRAVEEIKALGSRLIGG 121 (288)
T ss_dssp CCSEEEECCCH------HHHHHHHHHHHH-------TTCSEEEECCSCCC----HHHHHHHHHHHHHHTCEEEES
T ss_pred CCCEEEEecCH------HHHHHHHHHHHH-------CCCCEEEEECCCCC----HHHHHHHHHHHHHcCCEEEeC
Confidence 68999998884 345555655531 46665555555532 222456677778889988854
No 461
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=21.89 E-value=69 Score=22.77 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=16.8
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCC
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLG 32 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g 32 (202)
||++|+||-.+ ..+.+.+...++. .|
T Consensus 1 Mm~~ilivdd~-----~~~~~~l~~~L~~-~~ 26 (220)
T 1p2f_A 1 MMWKIAVVDDD-----KNILKKVSEKLQQ-LG 26 (220)
T ss_dssp CCEEEEEECSC-----HHHHHHHHHHHTT-TE
T ss_pred CCceEEEEeCC-----HHHHHHHHHHHHh-CC
Confidence 78889988433 3355566666766 55
No 462
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=21.87 E-value=93 Score=23.35 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=22.6
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+.|+++|.| -+.-|..++++.+.+ .|..|.+.+..
T Consensus 3 ~~k~~lVTG----as~GIG~aia~~la~-~G~~V~~~~r~ 37 (264)
T 3tfo_A 3 MDKVILITG----ASGGIGEGIARELGV-AGAKILLGARR 37 (264)
T ss_dssp TTCEEEESS----TTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred CCCEEEEeC----CccHHHHHHHHHHHH-CCCEEEEEECC
Confidence 346777744 444466677777766 78887776643
No 463
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=21.81 E-value=3.1e+02 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhccCCceEEEEEcc
Q 028917 18 TMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 18 ~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
.+++.|++.+++ .|+++++..+.
T Consensus 404 ~~a~~iq~~l~~-iGI~v~i~~~~ 426 (562)
T 2wol_A 404 LVADAVVESLAR-VGIELTVKELD 426 (562)
T ss_dssp HHHHHHHHHHHT-TTEEEEEEEEC
T ss_pred HHHHHHHHHHHH-cCceeEEEecC
Confidence 899999999999 89999887664
No 464
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=21.77 E-value=74 Score=21.83 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=14.9
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhh
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGAN 28 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~ 28 (202)
||++|+|+=.+..|.|- +++.+++.+.
T Consensus 3 ~m~~i~i~G~~GsGKsT-la~~La~~l~ 29 (175)
T 1via_A 3 LAKNIVFIGFMGSGKST-LARALAKDLD 29 (175)
T ss_dssp --CCEEEECCTTSCHHH-HHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHH-HHHHHHHHcC
Confidence 44345444344467654 7788877764
No 465
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=21.77 E-value=2e+02 Score=19.64 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=27.8
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+..+|++|+....-...-...++.|+..+.. ....++++.++++
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~----~~~~~~piilv~n 138 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD----HAEATIVVMLVGN 138 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHT----TSCTTCEEEEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCeEEEEEE
Confidence 4457899999998665443333345566665532 1224667766665
No 466
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=21.72 E-value=68 Score=24.53 Aligned_cols=72 Identities=11% Similarity=0.060 Sum_probs=33.2
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh-ccCCeeEEec
Q 028917 1 MATKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL-KEADGFLFGF 79 (202)
Q Consensus 1 M~~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ad~ii~gs 79 (202)
|+|||+|| ..|+ +...++..+.+ .|.+|.+++-....- ....... ..+........+.+ ..+|.||+++
T Consensus 1 M~mkI~ii---GaGa---~G~~~a~~L~~-~g~~V~~~~r~~~~~-~~~~~~g--~~~~~~~~~~~~~~~~~~D~vilav 70 (294)
T 3g17_A 1 MSLSVAII---GPGA---VGTTIAYELQQ-SLPHTTLIGRHAKTI-TYYTVPH--APAQDIVVKGYEDVTNTFDVIIIAV 70 (294)
T ss_dssp --CCEEEE---CCSH---HHHHHHHHHHH-HCTTCEEEESSCEEE-EEESSTT--SCCEEEEEEEGGGCCSCEEEEEECS
T ss_pred CCcEEEEE---CCCH---HHHHHHHHHHH-CCCeEEEEEeccCcE-EEEecCC--eeccceecCchHhcCCCCCEEEEeC
Confidence 77799987 3344 33344444544 466677765432100 0000000 00000000012333 6899999999
Q ss_pred ccc
Q 028917 80 PSR 82 (202)
Q Consensus 80 P~y 82 (202)
|.+
T Consensus 71 k~~ 73 (294)
T 3g17_A 71 KTH 73 (294)
T ss_dssp CGG
T ss_pred Ccc
Confidence 998
No 467
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=21.69 E-value=1.9e+02 Score=19.43 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=28.1
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+..+|++|+....-...-...++.|++.+.. ....+.++.++++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~n 121 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE----HASADVEKMILGN 121 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCTTCEEEEEEE
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEE
Confidence 3456789999998766543322345556665532 1234677777766
No 468
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=21.69 E-value=69 Score=24.91 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=21.7
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccC-CceEEEEEcc
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVL-GVEATLWQVP 41 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~-g~~v~~~~l~ 41 (202)
||||+++.++.. .. ..+..+.+.+++ . |+++.++-..
T Consensus 5 mmkIl~v~~~~~-~~-~~~~~l~~~L~~-~~g~~v~~~~~~ 42 (376)
T 1v4v_A 5 MKRVVLAFGTRP-EA-TKMAPVYLALRG-IPGLKPLVLLTG 42 (376)
T ss_dssp CEEEEEEECSHH-HH-HHHHHHHHHHHT-STTEEEEEEECS
T ss_pred ceEEEEEEeccH-HH-HHHHHHHHHHHh-CCCCceEEEEcC
Confidence 569998876532 11 123455666766 5 6777665443
No 469
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*
Probab=21.60 E-value=56 Score=25.21 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=18.9
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccC--CceEEEEEc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVL--GVEATLWQV 40 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~--g~~v~~~~l 40 (202)
++|+|. |-|-.+...+++.|.+ . |.+|..++-
T Consensus 5 ~~vlVT-----GatG~iG~~l~~~L~~-~~~g~~V~~~~r 38 (348)
T 1oc2_A 5 KNIIVT-----GGAGFIGSNFVHYVYN-NHPDVHVTVLDK 38 (348)
T ss_dssp SEEEEE-----TTTSHHHHHHHHHHHH-HCTTCEEEEEEC
T ss_pred cEEEEe-----CCccHHHHHHHHHHHH-hCCCCEEEEEeC
Confidence 466653 4444456666666655 4 677777664
No 470
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=21.60 E-value=2.4e+02 Score=20.73 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=24.9
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEE-Ec
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLW-QV 40 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~-~l 40 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+. +.
T Consensus 10 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 47 (290)
T 3clk_A 10 VIAAVVSSVRTNFAQQILDGIQEEAHK-NGYNLIIVYSG 47 (290)
T ss_dssp EEEEECCCCSSSHHHHHHHHHHHHHHT-TTCEEEEEC--
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence 466665433 45667899999999998 89888776 44
No 471
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=21.56 E-value=1.2e+02 Score=20.31 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=29.2
Q ss_pred hhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 66 PHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 66 ~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
...+..+|++|+....-...-...++.|++.+..........+.++.++++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 126 (182)
T 1ky3_A 76 VAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGN 126 (182)
T ss_dssp -CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred HHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEE
Confidence 344678999999876544433344566666653321111235677777776
No 472
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=21.36 E-value=2.1e+02 Score=22.16 Aligned_cols=13 Identities=15% Similarity=-0.031 Sum_probs=10.9
Q ss_pred cCCeeEEeccccC
Q 028917 71 EADGFLFGFPSRF 83 (202)
Q Consensus 71 ~ad~ii~gsP~y~ 83 (202)
+.|+|++.+|...
T Consensus 66 ~~D~V~i~tp~~~ 78 (344)
T 3mz0_A 66 NVDAVLVTSWGPA 78 (344)
T ss_dssp TCCEEEECSCGGG
T ss_pred CCCEEEECCCchh
Confidence 4899999999864
No 473
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=21.34 E-value=95 Score=21.15 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=19.6
Q ss_pred CCceEEEEEec-CCChHHHHHHHHHHHhhc
Q 028917 1 MATKIYIVYYS-LYGHVETMAREVQRGANS 29 (202)
Q Consensus 1 M~~kiliiy~S-~~G~T~~la~~i~~~~~~ 29 (202)
||.+++++.|- ..|.|- +++.+++.+..
T Consensus 1 m~~~~i~l~G~~GsGKST-~a~~La~~l~~ 29 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSG-IVRCLQSVLPE 29 (178)
T ss_dssp CCCCEEEEECCTTSSHHH-HHHHHHHHSSS
T ss_pred CCceEEEEECCCCCCHHH-HHHHHHHhcCC
Confidence 77677777754 478764 88888888753
No 474
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=21.32 E-value=2.5e+02 Score=20.59 Aligned_cols=38 Identities=13% Similarity=-0.064 Sum_probs=27.4
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+++...
T Consensus 7 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 45 (291)
T 3l49_A 7 TIGITAIGTDHDWDLKAYQAQIAEIER-LGGTAIALDAGR 45 (291)
T ss_dssp EEEEEESCCSSHHHHHHHHHHHHHHHH-TTCEEEEEECTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEEcCCC
Confidence 466666543 33456789999999999 899888876543
No 475
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=21.21 E-value=84 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=19.8
Q ss_pred eEEEEEecCCCh---HHHHHHHHHHHhhccCCce
Q 028917 4 KIYIVYYSLYGH---VETMAREVQRGANSVLGVE 34 (202)
Q Consensus 4 kiliiy~S~~G~---T~~la~~i~~~~~~~~g~~ 34 (202)
+|.|+.+|..++ -...|+.+.+.+.+ .|+.
T Consensus 11 ~V~V~ggsr~~~~~~~~~~A~~lg~~LA~-~g~~ 43 (216)
T 1ydh_A 11 KICVFCGSHSGHREVFSDAAIELGNELVK-RKID 43 (216)
T ss_dssp EEEEECCSCCCSSHHHHHHHHHHHHHHHH-TTCE
T ss_pred eEEEEeCCCCCCCcHHHHHHHHHHHHHHH-CCCE
Confidence 566665676653 34678888888877 6643
No 476
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=21.21 E-value=1.3e+02 Score=21.78 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=8.7
Q ss_pred hhccCCeeEEe
Q 028917 68 QLKEADGFLFG 78 (202)
Q Consensus 68 ~l~~ad~ii~g 78 (202)
++.++|+|||.
T Consensus 57 ~l~~~Dglil~ 67 (219)
T 1q7r_A 57 QLEGLDGLVLP 67 (219)
T ss_dssp GGTTCSEEEEC
T ss_pred HHhhCCEEEEC
Confidence 35689999995
No 477
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=21.18 E-value=54 Score=25.66 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=20.2
Q ss_pred CceEEEEEecCCChHHHHHHHHHHHhhccC-CceEEEEEccC
Q 028917 2 ATKIYIVYYSLYGHVETMAREVQRGANSVL-GVEATLWQVPE 42 (202)
Q Consensus 2 ~~kiliiy~S~~G~T~~la~~i~~~~~~~~-g~~v~~~~l~~ 42 (202)
|++|+|. |-|-.+...+++.|.+ . |.+|..++-..
T Consensus 24 ~~~vlVt-----GatG~iG~~l~~~L~~-~~g~~V~~~~r~~ 59 (372)
T 3slg_A 24 AKKVLIL-----GVNGFIGHHLSKRILE-TTDWEVFGMDMQT 59 (372)
T ss_dssp CCEEEEE-----SCSSHHHHHHHHHHHH-HSSCEEEEEESCC
T ss_pred CCEEEEE-----CCCChHHHHHHHHHHh-CCCCEEEEEeCCh
Confidence 3456653 3334455666666655 4 77887776543
No 478
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=21.11 E-value=1.3e+02 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=28.8
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++.||. +|..-..|...++.|++ .|++++++++...
T Consensus 556 dvtiva---~G~~v~~al~Aa~~L~~-~Gi~~~Vvd~~~l 591 (680)
T 1gpu_A 556 DIILVA---TGSEVSLSVEAAKTLAA-KNIKARVVSLPDF 591 (680)
T ss_dssp SEEEEE---CTHHHHHHHHHHHHHHT-TTCCEEEEECSCH
T ss_pred CEEEEE---EcHHHHHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 455553 67777888889999988 8999999999764
No 479
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=21.11 E-value=1.4e+02 Score=21.27 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=9.8
Q ss_pred HHHHHhhccCCceEEEEEcc
Q 028917 22 EVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 22 ~i~~~~~~~~g~~v~~~~l~ 41 (202)
.+++.+++ .|+.+.++-+.
T Consensus 126 ~~a~~lk~-~gi~v~~Ig~G 144 (192)
T 2x5n_A 126 RLAKRMKK-NNVAIDIIHIG 144 (192)
T ss_dssp HHHHHHHH-TTEEEEEEEES
T ss_pred HHHHHHHH-CCCEEEEEEeC
Confidence 44455555 56555555544
No 480
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.09 E-value=2e+02 Score=21.49 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=27.7
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+.+..
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 41 (313)
T 3m9w_A 4 KIGMAIDDLRLERWQKDRDIFVKKAES-LGAKVFVQSAN 41 (313)
T ss_dssp EEEEEESCCSSSTTHHHHHHHHHHHHH-TSCEEEEEECT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHH-cCCEEEEECCC
Confidence 466666543 45567789999999999 89988887664
No 481
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=21.07 E-value=3.2e+02 Score=21.88 Aligned_cols=59 Identities=14% Similarity=-0.045 Sum_probs=32.8
Q ss_pred ccccCCc--chHHHHHHHHhhhhhhhhccCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 79 FPSRFGV--MAAQCKAFFDATYELWASQALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 79 sP~y~g~--~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
.|++|+. ..-+.+.++|-+.-.-..+.++|+++++++-. . ..+..++...+...|+.+.
T Consensus 145 vPVINa~~~~~HPtQaLaDl~Ti~E~~g~l~gl~va~vGD~---~---~rva~Sl~~~~~~lG~~v~ 205 (359)
T 2w37_A 145 VPVWNGLTDEWHPTQMLADFMTVKENFGKLQGLTLTFMGDG---R---NNVANSLLVTGAILGVNIH 205 (359)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHHHHHHSCCTTCEEEEESCT---T---SHHHHHHHHHHHHHTCEEE
T ss_pred CCEEcCCCCCCCccHHHHHHHHHHHHhCCcCCeEEEEECCC---c---cchHHHHHHHHHHcCCEEE
Confidence 5777632 11234556665432111256889888775431 1 1456677777777788765
No 482
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=20.89 E-value=1e+02 Score=21.69 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=21.8
Q ss_pred EEEEEecCCChHHHHHHHHHHHhhccCCceEEEE
Q 028917 5 IYIVYYSLYGHVETMAREVQRGANSVLGVEATLW 38 (202)
Q Consensus 5 iliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~ 38 (202)
=++|..|.+|+|..+.+.+ +.+++ .|+.+-.+
T Consensus 115 DvvI~iS~SG~t~~~i~~~-~~ak~-~g~~vI~I 146 (199)
T 1x92_A 115 DVLLAISTSGNSANVIQAI-QAAHD-REMLVVAL 146 (199)
T ss_dssp CEEEEECSSSCCHHHHHHH-HHHHH-TTCEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHH-HHHHH-CCCEEEEE
Confidence 3566678899999888754 55666 68655443
No 483
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=20.89 E-value=2.6e+02 Score=20.68 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=26.8
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
+|.++..+. +.....+.+.+.+.+++ .|.++.+.+..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~ 42 (297)
T 3rot_A 5 KYYLITHGSQDPYWTSLFQGAKKAAEE-LKVDLQILAPP 42 (297)
T ss_dssp EEEEECSCCCSHHHHHHHHHHHHHHHH-HTCEEEEECCS
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHH-hCcEEEEECCC
Confidence 355555443 44567889999999998 89888877754
No 484
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=20.77 E-value=2.2e+02 Score=19.72 Aligned_cols=48 Identities=6% Similarity=-0.018 Sum_probs=30.0
Q ss_pred ChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 65 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
....+..+|++|+....-...-...++.|++.+.. ....+.++.++++
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~----~~~~~~piilv~n 121 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDR----YATSTVLKLLVGN 121 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH----HSCTTCEEEEEEE
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEE
Confidence 35567899999998776554434455666666542 1224566666665
No 485
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=20.65 E-value=1e+02 Score=20.22 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=20.7
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+.||+.++-.|-+-|..+. ++ .|++++.+|+.+
T Consensus 6 i~iY~~p~C~~c~ka~~~L---~~-~gi~~~~~di~~ 38 (119)
T 3f0i_A 6 VVIYHNPKCSKSRETLALL---EN-QGIAPQVIKYLE 38 (119)
T ss_dssp CEEECCTTCHHHHHHHHHH---HH-TTCCCEEECHHH
T ss_pred EEEEECCCChHHHHHHHHH---HH-cCCceEEEEecc
Confidence 4568777644444443333 34 688889988865
No 486
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=20.50 E-value=2.1e+02 Score=19.58 Aligned_cols=48 Identities=6% Similarity=0.040 Sum_probs=29.8
Q ss_pred ChhhhccCCeeEEeccccCCcchHHHHHHHHhhhhhhhhccCCCCceEEEEe
Q 028917 65 RPHQLKEADGFLFGFPSRFGVMAAQCKAFFDATYELWASQALAGKPAGIFWS 116 (202)
Q Consensus 65 ~~~~l~~ad~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~~~t 116 (202)
....+..+|++|+....-...-...++.|++.+.. ....+.++.++++
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~----~~~~~~piilv~n 134 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ----HSSSNMVIMLIGN 134 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH----HSCTTCEEEEEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCCEEEEEE
Confidence 35667899999998776554333445566665532 1234677767665
No 487
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=20.45 E-value=3.2e+02 Score=21.61 Aligned_cols=59 Identities=14% Similarity=-0.042 Sum_probs=31.8
Q ss_pred ccccCCc--chHHHHHHHHhhhhhhhhc-cCCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 79 FPSRFGV--MAAQCKAFFDATYELWASQ-ALAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 79 sP~y~g~--~~~~~k~fld~~~~~~~~~-~l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
.|++|+. ..-+.+.++|-+.-.-..+ .++|++++.++-. . ..+..++...+...|+.+.
T Consensus 123 vPVINa~~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~---~---~~va~Sl~~~~~~~G~~v~ 184 (335)
T 1dxh_A 123 VPVFNGLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDA---R---NNMGNSLLLIGAKLGMDVR 184 (335)
T ss_dssp SCEEEEECSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCC---S---SHHHHHHHHHHHHTTCEEE
T ss_pred CCEEcCCCCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCC---c---cchHHHHHHHHHHcCCEEE
Confidence 4666632 1123455666543211124 5777877665431 1 1456677777777788765
No 488
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=20.42 E-value=88 Score=22.26 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=28.2
Q ss_pred eEEEEEecCCC-hHHHHHHHHHHHhhccCCc---eEEEEEccCC
Q 028917 4 KIYIVYYSLYG-HVETMAREVQRGANSVLGV---EATLWQVPET 43 (202)
Q Consensus 4 kiliiy~S~~G-~T~~la~~i~~~~~~~~g~---~v~~~~l~~~ 43 (202)
||.||...=+- -|+.|.+-..+.+++ .|+ +++++.++-.
T Consensus 18 ri~IV~arfn~~I~~~Ll~gA~~~L~~-~Gv~~~~i~v~~VPGa 60 (168)
T 1ejb_A 18 RVGIIHARWNRVIIDALVKGAIERMAS-LGVEENNIIIETVPGS 60 (168)
T ss_dssp CEEEEECCTTHHHHHHHHHHHHHHHHH-TTCCGGGEEEEECSSG
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcH
Confidence 68887754443 478888888888888 774 4677777653
No 489
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=20.38 E-value=86 Score=23.87 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=33.1
Q ss_pred HHHHHhhccCCceEEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhh--ccCCeeEEeccccCCcchHHHHHHHHhh
Q 028917 22 EVQRGANSVLGVEATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQL--KEADGFLFGFPSRFGVMAAQCKAFFDAT 97 (202)
Q Consensus 22 ~i~~~~~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ad~ii~gsP~y~g~~~~~~k~fld~~ 97 (202)
.+.+.|++ .|++|+.+.+.+..|.... .. ...+.+ .+.|.|+|.||. .++.|++.+
T Consensus 170 ~L~~~L~~-~G~~v~~~~~Y~~~~~~~~-----------~~-~~~~~l~~~~~d~v~FtS~~-------~v~~~~~~~ 227 (286)
T 3d8t_A 170 LLENALAE-RGYRVLPLMPYRHLPDPEG-----------IL-RLEEAVLRGEVDALAFVAAI-------QVEFLFEGA 227 (286)
T ss_dssp HHHHHHHH-TTCEEEEECSEEEEECHHH-----------HH-HHHHHHHTTCCSEEEESSHH-------HHHHHHHHC
T ss_pred HHHHHHHH-CCCEEEEEEEEEEecCccc-----------HH-HHHHHHHcCCCCEEEEECHH-------HHHHHHHHH
Confidence 45666777 7888877766543221000 00 112223 358999999986 578888765
No 490
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=20.37 E-value=1.9e+02 Score=18.81 Aligned_cols=33 Identities=15% Similarity=-0.029 Sum_probs=21.3
Q ss_pred EEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 6 YIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 6 liiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
+.||+.++-.+-+-|..+. ++ .|++++.+++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L---~~-~gi~~~~~di~~ 34 (120)
T 3l78_A 2 VTLFLSPSCTSCRKARAWL---NR-HDVVFQEHNIMT 34 (120)
T ss_dssp EEEEECSSCHHHHHHHHHH---HH-TTCCEEEEETTT
T ss_pred EEEEeCCCCHHHHHHHHHH---HH-cCCCeEEEeccc
Confidence 3578777644444444433 44 688999999976
No 491
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=20.32 E-value=84 Score=23.05 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=21.4
Q ss_pred EEEecCC--ChHHHHHHHHHHHhhccCCce
Q 028917 7 IVYYSLY--GHVETMAREVQRGANSVLGVE 34 (202)
Q Consensus 7 iiy~S~~--G~T~~la~~i~~~~~~~~g~~ 34 (202)
|+|++.. -||+..++.+.+.+++ .|+.
T Consensus 17 ~~YF~~~G~eNT~~tl~la~era~e-~~Ik 45 (201)
T 1vp8_A 17 IVYFNKPGRENTEETLRLAVERAKE-LGIK 45 (201)
T ss_dssp CEEESSCSGGGHHHHHHHHHHHHHH-HTCC
T ss_pred EEEecCCCcccHHHHHHHHHHHHHH-cCCC
Confidence 5677765 4999999999999988 6654
No 492
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}
Probab=20.28 E-value=84 Score=24.05 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=22.0
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEcc
Q 028917 3 TKIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVP 41 (202)
Q Consensus 3 ~kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~ 41 (202)
|+|+|. |-|-.+...+++.|.+ .|.+|..++-.
T Consensus 14 M~ilVt-----GatG~iG~~l~~~L~~-~g~~V~~~~r~ 46 (342)
T 2x4g_A 14 VKYAVL-----GATGLLGHHAARAIRA-AGHDLVLIHRP 46 (342)
T ss_dssp CEEEEE-----STTSHHHHHHHHHHHH-TTCEEEEEECT
T ss_pred CEEEEE-----CCCcHHHHHHHHHHHH-CCCEEEEEecC
Confidence 366663 4455577777777777 78888877654
No 493
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}
Probab=20.20 E-value=3.6e+02 Score=22.10 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=19.4
Q ss_pred CCCCceEEEEecCCCCCChHHHHHHHHHHHHHcCcEEe
Q 028917 106 LAGKPAGIFWSTGFHGGGQELTALTAVTQLAHHGMLFV 143 (202)
Q Consensus 106 l~gK~~~~~~t~g~~~g~~~~~l~~~~~~l~~~g~~vv 143 (202)
++|+++++++...-..|..-....++...+...|+.+.
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~ 223 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVV 223 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEE
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEE
Confidence 56777766643211112212345566666666677654
No 494
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=20.16 E-value=1.3e+02 Score=26.44 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=28.3
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCceEEEEEccCC
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVEATLWQVPET 43 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~v~~~~l~~~ 43 (202)
++.||. +|..-..|...++.|++ .|++++++++...
T Consensus 578 dvtiia---~G~~v~~Al~Aa~~L~~-~GI~~~Vid~~~i 613 (690)
T 3m49_A 578 DVILLA---TGSEVSLAVEAQKALAV-DGVDASVVSMPSM 613 (690)
T ss_dssp SEEEEE---CTTHHHHHHHHHHHHHH-TTCCEEEEECSCH
T ss_pred CEEEEE---echHHHHHHHHHHHHHh-cCCCeEEEecccC
Confidence 355553 67777788888899988 8999999999763
No 495
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=20.11 E-value=63 Score=26.73 Aligned_cols=67 Identities=4% Similarity=-0.073 Sum_probs=39.6
Q ss_pred eEEEEEecCCChHHHHHHHHHHHhhccCCce--EEEEEccCCCcHHHHhhcCCCCCCCCCCcCChhhhccCCeeEEe---
Q 028917 4 KIYIVYYSLYGHVETMAREVQRGANSVLGVE--ATLWQVPETLSSVILQKMKAPPKTNDVPVIRPHQLKEADGFLFG--- 78 (202)
Q Consensus 4 kiliiy~S~~G~T~~la~~i~~~~~~~~g~~--v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ad~ii~g--- 78 (202)
+|++|- ..|-+..+..++.+.+.. .+++ .+.+++.. ....... +.+|+...+.++++|++++|
T Consensus 32 ~I~vip--GDGIGpEI~~~~~~vL~~-~~~~i~~~~~~~G~----~~~~~tg-----~~lp~etl~aik~~da~LkGav~ 99 (427)
T 3us8_A 32 PVVELD--GDEMTRIIWQFIKDKLIH-PYLDLDLEYYDLGV----ENRDATD-----DQVTIDAANAIKKHGVGVKCATI 99 (427)
T ss_dssp CEEEEE--CCHHHHHHHHHHHHHHTT-TTEECCEEEEECCH----HHHHHTT-----THHHHHHHHHHHHHSEEEECCCC
T ss_pred eEEEEc--CCcccHHHHHHHHHHHHh-cCCCeEEEEEeCCH----HHHHhhC-----CcCCHHHHHHHHHCCEEEECCcc
Confidence 344442 467788888888888876 6654 44455432 1111100 11222356778999999986
Q ss_pred cccc
Q 028917 79 FPSR 82 (202)
Q Consensus 79 sP~y 82 (202)
+|.|
T Consensus 100 tP~~ 103 (427)
T 3us8_A 100 TPDE 103 (427)
T ss_dssp CCCH
T ss_pred CCCc
Confidence 6766
No 496
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=20.07 E-value=2e+02 Score=20.46 Aligned_cols=34 Identities=12% Similarity=0.259 Sum_probs=25.4
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEE
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQ 39 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~ 39 (202)
++.++++++ .|-|..+.+.+.+... .|..|-++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEE
Confidence 578888886 7999888877666654 577777775
No 497
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=20.05 E-value=2e+02 Score=22.02 Aligned_cols=38 Identities=8% Similarity=0.075 Sum_probs=27.8
Q ss_pred eEEEEEecC-CChHHHHHHHHHHHhhccCCceEEEEEccC
Q 028917 4 KIYIVYYSL-YGHVETMAREVQRGANSVLGVEATLWQVPE 42 (202)
Q Consensus 4 kiliiy~S~-~G~T~~la~~i~~~~~~~~g~~v~~~~l~~ 42 (202)
.|.++..+. +.....+.+.+.+.+++ .|.++.+.+..+
T Consensus 66 ~Igvi~~~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~ 104 (333)
T 3jvd_A 66 LVGVIVPDLSNEYYSESLQTIQQDLKA-AGYQMLVAEANS 104 (333)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHH-HTCEEEEEECCS
T ss_pred EEEEEeCCCcChHHHHHHHHHHHHHHH-CCCEEEEECCCC
Confidence 366666443 34567889999999998 899888877654
Done!