BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028918
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AF48|YJBQ_ECOLI UPF0047 protein YjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3
SV=1
Length = 138
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 3/139 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W QKT+TL RG HL+T +I+ ++A D+ GL HL L HTSASLT+NEN D VR
Sbjct: 2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
D E F + VP+ + +++H EG DDMP+HIKSSM G +L +P+ G++ GTWQGIW
Sbjct: 61 HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIW 118
Query: 183 LCEHRDAPTPRKVVITLNG 201
L EHR R+++ TL G
Sbjct: 119 LGEHRIHGGSRRIIATLQG 137
>sp|P0AF49|YJBQ_ECO57 UPF0047 protein YjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1
Length = 138
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 92/139 (66%), Gaps = 3/139 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W QKT+TL RG HL+T +I+ ++A D+ GL HL L HTSASLT+NEN D VR
Sbjct: 2 WYQKTLTLSAKSRGFHLVTDEILNQLA-DMPRVNIGLLHLLLQHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
D E F + VP+ + +++H EG DDMP+HIKSSM G +L +P+ G++ GTWQGIW
Sbjct: 61 HDMERFFLRTVPD--NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIW 118
Query: 183 LCEHRDAPTPRKVVITLNG 201
L EHR R+++ TL G
Sbjct: 119 LGEHRIHGGSRRIIATLQG 137
>sp|O14155|YE72_SCHPO UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC4A8.02c PE=3 SV=1
Length = 142
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 96/138 (69%), Gaps = 3/138 (2%)
Query: 65 QKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDD 124
Q+ +TL +G ++IT +VK++ + L F G + F+ HTSA+LTINEN+D+D R D
Sbjct: 5 QRIITLDRRSKGFYIITNDLVKKLPE-LKSFSSGTVNFFIQHTSAALTINENWDADTRAD 63
Query: 125 TETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLC 184
L+KIVPE SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ I L
Sbjct: 64 MNDILDKIVPE--SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLA 121
Query: 185 EHRDAPTPRKVVITLNGI 202
E R P R +V T+ G+
Sbjct: 122 EFRRQPHSRTIVCTIIGL 139
>sp|P0A2L1|YJBQ_SALTY UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=yjbQ PE=3 SV=1
Length = 138
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 3/139 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W Q+T+TL RG HLIT +I +++ L + GL HL LLHTSASLT+NEN D VR
Sbjct: 2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
D E K VP+ +A+++H EG DDMP+HIKSS+ G +L +P+ G+L +GTWQGIW
Sbjct: 61 ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIW 118
Query: 183 LCEHRDAPTPRKVVITLNG 201
L EHR PRK++ TL G
Sbjct: 119 LGEHRIHGGPRKIIATLQG 137
>sp|P0A2L2|YJBQ_SALTI UPF0047 protein YjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1
Length = 138
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 3/139 (2%)
Query: 63 WAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVR 122
W Q+T+TL RG HLIT +I +++ L + GL HL LLHTSASLT+NEN D VR
Sbjct: 2 WYQRTITLSEKPRGFHLITDEITDKLS-GLPPVETGLLHLLLLHTSASLTLNENCDPTVR 60
Query: 123 DDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIW 182
D E K VP+ +A+++H EG DDMP+HIKSS+ G +L +P+ G+L +GTWQGIW
Sbjct: 61 ADMERHFLKTVPD--NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIW 118
Query: 183 LCEHRDAPTPRKVVITLNG 201
L EHR PRK++ TL G
Sbjct: 119 LGEHRIHGGPRKIIATLQG 137
>sp|P74125|Y1880_SYNY3 UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1880 PE=3 SV=1
Length = 147
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/145 (41%), Positives = 88/145 (60%), Gaps = 5/145 (3%)
Query: 58 ASNPRWAQKTVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENY 117
A+ R Q+ + + + H KI + + Q S K GL +F+ HTSASL I EN
Sbjct: 5 AATFRQHQEILVIATQGKSLHNFNSKI-QAVVQH-SGVKTGLCTVFVRHTSASLIIQENA 62
Query: 118 DSDVRDDTETFLNKIVPE-GRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMG 176
D DV D F ++VPE GR ++H+ EG DDMPAHI+S++ + IPI +G+L +G
Sbjct: 63 DPDVLTDLAIFFAQLVPEDGRR--YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLG 120
Query: 177 TWQGIWLCEHRDAPTPRKVVITLNG 201
TWQG++L EHR P R+V++ ++G
Sbjct: 121 TWQGVFLWEHRQRPHQREVIVHVSG 145
>sp|Q58481|Y1081_METJA UPF0047 protein MJ1081 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1081 PE=3 SV=1
Length = 138
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 10/123 (8%)
Query: 80 ITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139
ITP I+ I++ S+ K G+A +++ HT+A +TINEN D V+ D FL+ ++P+
Sbjct: 23 ITPYIISAISE--SKVKDGIAVIYVPHTTAGITINENADPSVKHDIINFLSHLIPK---- 76
Query: 140 SWKHT-LEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVIT 198
+W T LEG D AHIKSS+ GC+ TI I DG+ +GTWQGI+ E D P R+ +
Sbjct: 77 NWNFTHLEGNSD--AHIKSSLVGCSQTIIIKDGKPLLGTWQGIFFAEF-DGPRRREFYVK 133
Query: 199 LNG 201
+ G
Sbjct: 134 IIG 136
>sp|O05243|YUGU_BACSU UPF0047 protein YugU OS=Bacillus subtilis (strain 168) GN=yugU PE=3
SV=2
Length = 132
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 11/122 (9%)
Query: 84 IVKEIAQDLSE--FKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141
I +E+ L E G A ++ HT+A +TINEN D DV+ D +++ P W
Sbjct: 18 ITREVEAFLQETGITSGAALIYCPHTTAGITINENADPDVKKDMLRRFDEVYP------W 71
Query: 142 KHTLEG--PDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITL 199
+H L+ + AH+KSS G + + + +G+L +GTWQGI+ CE D P R I +
Sbjct: 72 EHELDRHMEGNTAAHMKSSTVGASQHVIVENGRLILGTWQGIYFCEF-DGPRTRTCYIKM 130
Query: 200 NG 201
G
Sbjct: 131 MG 132
>sp|O28229|Y2050_ARCFU UPF0047 protein AF_2050 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2050 PE=3 SV=1
Length = 126
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 94 EFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHT-LEGPDDMP 152
E + GL ++ HT+ +L INE + + +D F+ K+VP G+ +KH L+ D
Sbjct: 25 ESRDGLVLVYTPHTTTALVINEG-ERGLLEDILEFMEKLVPYGKG--YKHDRLDSNAD-- 79
Query: 153 AHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVI 197
AH+K+++ G ++ +P+ G+L +GTWQ I E D P R+V++
Sbjct: 80 AHLKATLLGNSVVVPVESGKLALGTWQRILFLEF-DGPRTRRVIV 123
>sp|O26865|Y771_METTH UPF0047 protein MTH_771 OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_771 PE=3 SV=1
Length = 143
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 72 PLR--RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFL 129
PLR R LI + + S + G+ ++F H+++++ INEN +S + D E+ L
Sbjct: 15 PLRTSRRVELIDITSMVSGVLESSGIRNGILNVFSRHSTSAIFINEN-ESRLLSDIESML 73
Query: 130 NKIVPEGRSASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDA 189
VP AS+ H ++ +H+++ + G + T+P+ +G +++GTWQ I+ E D
Sbjct: 74 EGTVPV--DASYGHNAI-DNNADSHLRAVLLGGSQTVPVINGSMDLGTWQSIFFAE-LDG 129
Query: 190 PTPRKVVITLNG 201
P R++ +++ G
Sbjct: 130 PRNRRIRVSVAG 141
>sp|P67122|Y2586_MYCBO UPF0047 protein Mb2586c OS=Mycobacterium bovis (strain ATCC BAA-935
/ AF2122/97) GN=Mb2586c PE=3 SV=1
Length = 129
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
GL ++F+ H +A + I E D +T + +++P R ++H H+
Sbjct: 28 GLCNVFVPHATAGVAIIETGAGSDEDLVDTLV-RLLP--RDDRYRHAHGSYGHGADHLLP 84
Query: 158 SMFGCTLTIPITDGQLNMGTWQGIWLCE 185
+ ++T+P++ GQ +GTWQ I L +
Sbjct: 85 AFVAPSVTVPVSGGQPLLGTWQSIVLVD 112
>sp|P67121|Y2556_MYCTU UPF0047 protein Rv2556c/MT2633 OS=Mycobacterium tuberculosis
GN=Rv2556c PE=3 SV=1
Length = 129
Score = 38.1 bits (87), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 98 GLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLEGPDDMPAHIKS 157
GL ++F+ H +A + I E D +T + +++P R ++H H+
Sbjct: 28 GLCNVFVPHATAGVAIIETGAGSDEDLVDTLV-RLLP--RDDRYRHAHGSYGHGADHLLP 84
Query: 158 SMFGCTLTIPITDGQLNMGTWQGIWLCE 185
+ ++T+P++ GQ +GTWQ I L +
Sbjct: 85 AFVAPSVTVPVSGGQPLLGTWQSIVLVD 112
>sp|P46267|F16P2_BRANA Fructose-1,6-bisphosphatase, cytosolic OS=Brassica napus PE=2 SV=1
Length = 339
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTE 126
T+ L + GC + + K GLA L L ++ E DV + +
Sbjct: 33 TILLSNIVLGCKFVCSAVNK----------AGLAKLIGLAGDTNIQGEEQKKLDVLSN-D 81
Query: 127 TFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFG--CTLTIPI-----TDGQLNMGTWQ 179
F+ +V GR++ + D+ ++SS G C + P+ D +++GT
Sbjct: 82 VFVKALVSSGRTSVL---VSEEDEEATFVESSKCGKYCVVFDPLDGSSNIDCGVSIGTIF 138
Query: 180 GIWLCEHRDAPTPRKVV 196
GI+ EH D PT + V+
Sbjct: 139 GIYTMEHSDEPTTKDVL 155
>sp|Q9MA79|F16P2_ARATH Fructose-1,6-bisphosphatase, cytosolic OS=Arabidopsis thaliana
GN=At1g43670 PE=2 SV=1
Length = 341
Score = 33.5 bits (75), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTE 126
T+ L + GC + + K GLA L L ++ E DV + +
Sbjct: 34 TILLSHIVLGCKFVCSAVNK----------AGLAKLIGLAGETNIQGEEQKKLDVLSN-D 82
Query: 127 TFLNKIVPEGRSASWKHTLEGPDDMPAHIKSSMFG--CTLTIPI-----TDGQLNMGTWQ 179
F+N +V GR++ + D+ ++ S G C + P+ D +++GT
Sbjct: 83 VFVNALVSSGRTSVL---VSEEDEEATFVEPSKRGKYCVVFDPLDGSSNIDCGVSIGTIF 139
Query: 180 GIWLCEHRDAPTPRKVV 196
GI+ +H D PT V+
Sbjct: 140 GIYTLDHTDEPTTADVL 156
>sp|Q9GZS1|RPA49_HUMAN DNA-directed RNA polymerase I subunit RPA49 OS=Homo sapiens
GN=POLR1E PE=1 SV=2
Length = 481
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 158 SMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRK 194
S GCTLT+ ++G+L L E++D+ PRK
Sbjct: 80 SFLGCTLTVQFSNGKLQSPGNMRFTLYENKDSTNPRK 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,912,871
Number of Sequences: 539616
Number of extensions: 3298693
Number of successful extensions: 13210
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 13017
Number of HSP's gapped (non-prelim): 180
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)