Query 028918
Match_columns 202
No_of_seqs 153 out of 1124
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 07:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6c_A AQ_2013 protein; NPPSFA 100.0 2.9E-58 1E-62 370.5 17.3 136 61-202 1-137 (137)
2 1vmj_A Hypothetical protein TM 100.0 1.1E-56 3.9E-61 366.7 18.2 139 60-202 12-151 (151)
3 2p6h_A Hypothetical protein; s 100.0 2E-56 6.9E-61 358.6 16.1 133 63-202 1-134 (134)
4 1ve0_A Hypothetical protein (S 100.0 4.5E-56 1.5E-60 356.6 17.1 133 61-202 1-134 (134)
5 1vph_A Hypothetical protein SS 100.0 5.3E-56 1.8E-60 362.1 15.9 137 59-202 11-149 (149)
6 1vmf_A Hypothetical protein; s 100.0 3.8E-54 1.3E-58 349.8 17.3 132 64-202 12-145 (145)
7 1vmh_A Uncharacterized conserv 100.0 2.3E-53 7.7E-58 344.9 15.7 128 65-200 16-144 (144)
8 2cu5_A Conserved hypothetical 100.0 1E-51 3.5E-56 329.8 13.9 124 67-200 6-129 (129)
9 4f02_C Eukaryotic translation 21.3 27 0.00092 20.3 0.6 20 67-86 2-21 (27)
10 3r8n_J 30S ribosomal protein S 11.3 1.7E+02 0.0059 21.0 2.9 33 65-99 58-92 (98)
No 1
>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=2.9e-58 Score=370.46 Aligned_cols=136 Identities=29% Similarity=0.510 Sum_probs=131.7
Q ss_pred CeEEEEEEEecCCC-CeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 028918 61 PRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (202)
Q Consensus 61 m~~~~~titv~T~~-r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~ 139 (202)
|++++++|+|+|++ ++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|+.||+++|++|||+++
T Consensus 1 M~~~~~~i~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~-- 75 (137)
T 2p6c_A 1 MKAYTKYLTFNTKKRRELIRITDEVKKAVEE--SEVKEGLCLVSSMHLTSSVIIQDD-EEGLHEDIWEWLEKLAPYRP-- 75 (137)
T ss_dssp CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HTCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCT--
T ss_pred CcEEEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHHCCCCC--
Confidence 89999999999986 5999999999999998 999999999999999999999999 99999999999999999984
Q ss_pred CcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 202 (202)
Q Consensus 140 ~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 202 (202)
+|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+||||||| |||+|+|+++++||
T Consensus 76 ~y~H~~eg~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~d-g~r~R~v~v~i~Ge 137 (137)
T 2p6c_A 76 DYKHHRTGEDNGDAHLKNLLTHLQVVLPITNGKLDLGPWQEIFYAEFD-GQRPKRVVIKIIGE 137 (137)
T ss_dssp TCGGGGGTCCCHHHHHHHHHHCSEEEEEECSSSBCCCSSCEEEEEESS-CSSCEEEEEEEEEC
T ss_pred CcccCcCCCCCHHHhhhhheeCCeEEEEEECCEECcCCCceEEEEECC-CCCccEEEEEEecC
Confidence 799999999999999999999999999999999999999999999995 89999999999997
No 2
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Probab=100.00 E-value=1.1e-56 Score=366.68 Aligned_cols=139 Identities=29% Similarity=0.506 Sum_probs=132.0
Q ss_pred CCeEEEEEEEecCC-CCeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCC
Q 028918 60 NPRWAQKTVTLPPL-RRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRS 138 (202)
Q Consensus 60 ~m~~~~~titv~T~-~r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~ 138 (202)
.|+-|+++|+|+|. +++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+++.
T Consensus 12 ~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-dp~v~~Dl~~~l~rlvP~~~~ 88 (151)
T 1vmj_A 12 HMKSYRKELWFHTKRRREFINITPLLEECVRE--SGIKEGLLLCNAMHITASVFINDD-EPGLHHDFEVWLEKLAPEKPY 88 (151)
T ss_dssp -CEEEEEEEEECCSSSSEEEECHHHHHHHHHH--HCCSSEEEEEEESSTTEEEEEECC-CHHHHHHHHHHHHHHSCCCCG
T ss_pred hhhceEEEEEEECCCCCeEEEChHHHHHHHHH--cCCcccEEEEEeCCCcEEEEEEcC-CccHHHHHHHHHHHhCCCCCC
Confidence 59999999999996 56999999999999998 999999999999999999999999 999999999999999998731
Q ss_pred CCcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918 139 ASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 202 (202)
Q Consensus 139 ~~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 202 (202)
..|+|++||+|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+|+++||
T Consensus 89 ~~y~H~~eg~dn~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dg~r~R~V~v~i~Ge 151 (151)
T 1vmj_A 89 SQYKHNDTGEDNADAHLKRTIMGREVVIAITDRKMDLGPWEQVFYGEF-DGMRPKRVLVKIIGE 151 (151)
T ss_dssp GGCGGGTTSCCCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSSCEEEEEEEEEC
T ss_pred CCcEecCcCCCchHhhhhhhhcCCeEEEEEECCEECcCCCcEEEEEEC-CCCCeeEEEEEEecC
Confidence 169999999999999999999999999999999999999999999999 799999999999997
No 3
>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}
Probab=100.00 E-value=2e-56 Score=358.61 Aligned_cols=133 Identities=28% Similarity=0.486 Sum_probs=128.3
Q ss_pred EEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCc
Q 028918 63 WAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASW 141 (202)
Q Consensus 63 ~~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y 141 (202)
+++++|+++|++| +++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|+.||+++|+||||+++ +|
T Consensus 1 ~~~~~i~~~t~~r~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTasltinEn-dp~v~~Dl~~~l~~lvP~~~--~y 75 (134)
T 2p6h_A 1 METGSFTVKTERRLQVLDVTGKVEEWLST--VGGVNGLLVVYVPHTTAAVAVNEA-EPRLMEDIVEFIRELTKPGG--PW 75 (134)
T ss_dssp CEEEEEEEECCSSSEEEECHHHHHHHHHT--TTCCSEEEEEECCCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS--SC
T ss_pred CeEEEEEEecCCCCeEEECHHHHHHHHHH--cCCCceEEEEEeCCCeEEEEEEcC-CccHHHHHHHHHHHhCCCCC--Cc
Confidence 3789999999876 999999999999998 999999999999999999999999 99999999999999999984 79
Q ss_pred ccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918 142 KHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 202 (202)
Q Consensus 142 ~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 202 (202)
+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++||
T Consensus 76 ~H~~e-~dn~~AHiks~l~G~s~tipv~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~Ge 134 (134)
T 2p6h_A 76 KHNLV-DVNAHAHLGNTIIGDSRVIPVVGGRLSLGTWQRILFVEM-DGPRERTVNLLYLGE 134 (134)
T ss_dssp GGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSCEEEEEEEEEEC
T ss_pred cccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCceEEEEEC-CCCCceEEEEEEecC
Confidence 99999 999999999999999999999999999999999999999 799999999999997
No 4
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.5e-56 Score=356.59 Aligned_cols=133 Identities=30% Similarity=0.523 Sum_probs=128.5
Q ss_pred CeEEEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCC
Q 028918 61 PRWAQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSA 139 (202)
Q Consensus 61 m~~~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~ 139 (202)
|++++++|+++|++| +++|||++|+++|+ |+++|+|+||++||||||+|||| ||+|+.||+++|+||||+++
T Consensus 1 M~~~~~~i~~~t~~r~~~~dIT~~V~~~v~----gi~~Gl~~vf~~HTTasl~inEn-dp~v~~Dl~~~l~~lvP~~~-- 73 (134)
T 1ve0_A 1 MKIISKEFTVKTRSRFDSIDITEQVSEAIK----GINNGIAHVIVKHTTCAIIINEA-ESGLMKDFLNWAKKLVPPDG-- 73 (134)
T ss_dssp CEEEEEEEEEECCSSSEEEECHHHHHHHTT----TCSSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHSCTTS--
T ss_pred CcEEEEEEEEecCCCCeEEEChHHHHHHhc----ccCceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHHCCCCC--
Confidence 899999999999876 99999999999996 89999999999999999999999 99999999999999999984
Q ss_pred CcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEecC
Q 028918 140 SWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 202 (202)
Q Consensus 140 ~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~Ge 202 (202)
+|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++||
T Consensus 74 ~y~H~~e-~dn~~AHiks~l~G~s~tipV~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~Ge 134 (134)
T 1ve0_A 74 EFEHNII-DNNGHAHVISAIIGNSRVVPIIEGKLDLGTWQRIILLEF-DGPRTRTVLVKSMGE 134 (134)
T ss_dssp CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSCEEEEEEEEEEC
T ss_pred CccccCC-CCChHHhhhhhccCCcEEEEEECCEeccCCCcEEEEEEC-CCCCeeEEEEEEecC
Confidence 6999999 999999999999999999999999999999999999999 789999999999997
No 5
>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1
Probab=100.00 E-value=5.3e-56 Score=362.06 Aligned_cols=137 Identities=27% Similarity=0.500 Sum_probs=130.4
Q ss_pred CCCeEEEEEEEecCCC-CeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCC
Q 028918 59 SNPRWAQKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGR 137 (202)
Q Consensus 59 ~~m~~~~~titv~T~~-r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~ 137 (202)
-.|++|+++|+|+|.+ ++++|||++|+++|++ ||+++|+|+||++||||||+|||| ||+|+.||+++|++|||+++
T Consensus 11 ~~~~~~~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEn-Dp~v~~Dl~~~l~rlvP~~~ 87 (149)
T 1vph_A 11 HHMKVYFDDIYVSTARQFELVDITDQVEQIVEK--SGIKNGICLIFVAHSTAAIVANEH-ERGLMEDILTKIKEFTEPSR 87 (149)
T ss_dssp -CCEEEEEEEEEEECSSSEEEECHHHHHHHHHH--HCCCSEEEEEEECCSSEEEEEECC-CHHHHHHHHHHHHHHHCTTS
T ss_pred ceeeEEEEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEECC-CccHHHHHHHHHHHhCCCCC
Confidence 3599999999999987 4999999999999998 999999999999999999999999 99999999999999999984
Q ss_pred CCCcccCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028918 138 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI 202 (202)
Q Consensus 138 ~~~Y~H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge 202 (202)
+|+|++| +|||+|||||+|+|+|++|||.||+|.|||||+|||||| |+|| +|+|+++++||
T Consensus 88 --~y~H~~e-~dn~~AHiKssL~G~S~tiPV~~G~L~LGtWQgIyl~E~-dg~r~~R~v~v~i~Ge 149 (149)
T 1vph_A 88 --SWKHNLI-DDNAHAHLGATFLGAERVFPVREGKLVRGTWQNIFLVEL-DGPRSERHITVEILGE 149 (149)
T ss_dssp --CCGGGGT-CSCHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCCEEEEEEEEEEEEC
T ss_pred --CccccCc-CCCHHHhhhhhhcCCeEEEEEECCEECcCCCcEEEEEEC-CCCCCCeEEEEEEecC
Confidence 6999988 999999999999999999999999999999999999999 5666 89999999997
No 6
>1vmf_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, unknown function; HET: EPE; 1.46A {Bacillus halodurans} SCOP: d.273.1.1
Probab=100.00 E-value=3.8e-54 Score=349.80 Aligned_cols=132 Identities=37% Similarity=0.562 Sum_probs=124.1
Q ss_pred EEEEEEecCCCC-eEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcc
Q 028918 64 AQKTVTLPPLRR-GCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWK 142 (202)
Q Consensus 64 ~~~titv~T~~r-~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~ 142 (202)
+.++|+|.|.++ +++|||++|+++|++ ||+++|+|+||++||||||+|||||||+|+.||+++|+||||+++ ..|+
T Consensus 12 ~~~~l~~~t~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~-~~y~ 88 (145)
T 1vmf_A 12 HMKTFHLTTQSRDEMVDITSQIETWIRE--TGVTNGVAIVSSLHTTAGITVNENADPDVKRDMIMRLDEVYPWHH-ENDR 88 (145)
T ss_dssp CEEEEEECCCSSSEEEECHHHHHHHHHH--HTCCSEEEEEEESCSSEEEEEEESSCHHHHHHHHHHHHHHSCSCC-TTCC
T ss_pred ceeEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhcCCCC-CCcC
Confidence 468999999754 999999999999998 999999999999999999999999999999999999999999874 2799
Q ss_pred cCCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCC-CeEEEEEEecC
Q 028918 143 HTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPT-PRKVVITLNGI 202 (202)
Q Consensus 143 H~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr-~R~V~v~v~Ge 202 (202)
| .|| ||+|||||+|+|+|++|||.||+|.|||||+|||||| |||| +|+|+|+++||
T Consensus 89 H-~EG--n~~AHiKssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dgpr~~R~v~v~i~Ge 145 (145)
T 1vmf_A 89 H-MEG--NTAAHLKTSTVGHAQTLIISEGRLVLGTWQGVYFCEF-DGPRTNRKFVVKLLTD 145 (145)
T ss_dssp C-TTS--CHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCCCSCEEEEEEEEEC
T ss_pred c-CCC--CHHHHHHHHhhCCeEEEEEECCEEccCCCceEEEEEC-cCCCCCcEEEEEEecC
Confidence 9 465 8999999999999999999999999999999999999 6899 99999999997
No 7
>1vmh_A Uncharacterized conserved protein YJBQ/UPF0047 FA ortholog YUGU B.subtilis; YJBQ-like fold, structural genomics; 1.31A {Clostridium acetobutylicum} SCOP: d.273.1.1 PDB: 1xbf_A
Probab=100.00 E-value=2.3e-53 Score=344.91 Aligned_cols=128 Identities=37% Similarity=0.556 Sum_probs=121.4
Q ss_pred EEEEEecCCC-CeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCccc
Q 028918 65 QKTVTLPPLR-RGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKH 143 (202)
Q Consensus 65 ~~titv~T~~-r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H 143 (202)
.++|+|+|.+ ++++|||++|+++|++ ||+++|+|+||++||||||+|||||||+|+.||+++|+||||+++ +|+|
T Consensus 16 ~~~l~v~T~~~~~~~dIT~~V~~~v~~--sgi~~Gl~~vf~~HTTAsltInEnaDp~v~~Dl~~~l~rlvP~~~--~y~H 91 (144)
T 1vmh_A 16 VIEYSLKTSNDDQFIDITNLVKKAVDE--SGVSDGMAVVFCPHTTAGITINENADPDVTRDILVNLDKVFPKVG--DYKH 91 (144)
T ss_dssp -CEEEEECCSSSEEEECHHHHHHHHHH--HCCSSEEEEEECCCTTEEEEEEECSCHHHHHHHHHHHHHHSCSSS--SCCC
T ss_pred cEEEEEEcCCCCeEEECHHHHHHHHHH--cCCcceEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC--Cccc
Confidence 3589999975 5999999999999998 999999999999999999999999999999999999999999984 7999
Q ss_pred CCCCCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028918 144 TLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN 200 (202)
Q Consensus 144 ~~eG~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~ 200 (202)
+ +|||+|||||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++
T Consensus 92 ~---~dn~~AHikssL~G~S~tiPV~~GrL~LGtWQgIyl~E~-dgpr~R~v~v~i~ 144 (144)
T 1vmh_A 92 V---EGNSHAHIKASLMGSSQQIIIENGKLKLGTWQGIYFTEF-DGPRDRKVFVKII 144 (144)
T ss_dssp T---TSCHHHHHHHHHHCSEEEEEEETTEECCCTTEEEEEEES-SCSCEEEEEEEEC
T ss_pred C---CCCchHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEEC-CCCceeEEEEEEC
Confidence 7 789999999999999999999999999999999999999 7899999999985
No 8
>2cu5_A Conserved hypothetical protein TT1486; thermus thermophilus HB8, ST genomics, riken structural genomics/proteomics initiative; 1.84A {Thermus thermophilus}
Probab=100.00 E-value=1e-51 Score=329.81 Aligned_cols=124 Identities=34% Similarity=0.551 Sum_probs=114.9
Q ss_pred EEEecCCCCeEEeccHHHHHHHHhhccCcceeEEEEEecccceEEEEeecCCchhHHHHHHHHhhhCCCCCCCCcccCCC
Q 028918 67 TVTLPPLRRGCHLITPKIVKEIAQDLSEFKCGLAHLFLLHTSASLTINENYDSDVRDDTETFLNKIVPEGRSASWKHTLE 146 (202)
Q Consensus 67 titv~T~~r~~~dIT~eV~~~V~~~~Sgi~~Glv~Vf~~HTTAsLtinEn~DP~v~~Dl~~~L~rLvP~~~~~~Y~H~~e 146 (202)
+|++++++++++|||++|+++|++ ++|+|+||++||||||+|||||||+|+.||+++|+||+|+++ .+|+| .|
T Consensus 6 ~i~~~~~~~~~~dIT~~V~~~v~~-----~~Gl~~vf~~HTTasltinEnadp~v~~Dl~~~l~~lvP~~~-~~y~H-~e 78 (129)
T 2cu5_A 6 RLEVPTPEEGFVNITRKVEAALSG-----HTGLVYLFVPHTTCGLTVQEGADPTVAQDLLGRLAELAPRHR-PQDRH-LE 78 (129)
T ss_dssp EEEEEECSSEEEECHHHHHHTSTT-----CCEEEEEECCCSSEEEEEECCSSHHHHHHHHHHHHHHSCSCC-TTCCC-TT
T ss_pred EEEEeCCCCeEEECHHHHHHHhhh-----cCcEEEEEeCCCcEEEEEeecCCcCHHHHHHHHHHHhCCCCC-CCcCc-CC
Confidence 577776677999999999999963 899999999999999999999999999999999999999872 26999 45
Q ss_pred CCCCchhhhhhhhcCceEEEEEeCCeeecCCcceEEEEEecCCCCCeEEEEEEe
Q 028918 147 GPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLN 200 (202)
Q Consensus 147 G~dn~~AHlkssLlG~SltIPV~dG~L~LGtWQ~I~l~E~~dgpr~R~V~v~v~ 200 (202)
| ||+||+||+|+|+|++|||.||+|.|||||+|||||| ||||+|+|+++++
T Consensus 79 G--n~~AHiks~L~G~s~tiPV~~G~L~LGtWQ~Iyl~E~-dg~r~R~v~v~i~ 129 (129)
T 2cu5_A 79 G--NSHAHLKSLLTGVHLLLLAEKGRLRLGRWQQVFLAEF-DGPRVREVWVRLL 129 (129)
T ss_dssp S--CHHHHHHHHHHCSEEEEEEETTEECCCTTCEEEEEES-SCSEEEEEEEEEC
T ss_pred C--CHHHHHHHHhhCCeEEEEEECCEECcCCCcEEEEEEC-CCCceeEEEEEEC
Confidence 5 8999999999999999999999999999999999999 7999999999985
No 9
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=21.34 E-value=27 Score=20.34 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=15.0
Q ss_pred EEEecCCCCeEEeccHHHHH
Q 028918 67 TVTLPPLRRGCHLITPKIVK 86 (202)
Q Consensus 67 titv~T~~r~~~dIT~eV~~ 86 (202)
+|.++-...|--|||+|+..
T Consensus 2 ~irirdpnqggkditeeims 21 (27)
T 4f02_C 2 TIRIRDPNQGGKDITEEIMS 21 (27)
T ss_pred cceecCccccchhhHHHHHh
Confidence 56677666688899998764
No 10
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=11.29 E-value=1.7e+02 Score=21.01 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=22.1
Q ss_pred EEEEEecCCCC--eEEeccHHHHHHHHhhccCcceeE
Q 028918 65 QKTVTLPPLRR--GCHLITPKIVKEIAQDLSEFKCGL 99 (202)
Q Consensus 65 ~~titv~T~~r--~~~dIT~eV~~~V~~~~Sgi~~Gl 99 (202)
.+.++++|+.| .+++.|+++.+.+-+ -.+..|+
T Consensus 58 reqfE~rthkRlIdi~~~~~~~v~~l~~--~~lp~GV 92 (98)
T 3r8n_J 58 RDQYEIRTHLRLVDIVEPTEKTVDALMR--LDLAAGV 92 (98)
T ss_dssp CEEEEEECBCCCCCBSCCCTTTTTTTTT--CCCCTTC
T ss_pred hHhEEEEEEEEEEEEeCCCHHHHHHHHc--CcCCCCc
Confidence 46777888777 677788775555544 4666664
Done!