Query 028920
Match_columns 202
No_of_seqs 17 out of 19
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 04:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00169 PH: PH domain; Inter 98.8 1.1E-08 2.4E-13 67.1 4.9 95 62-171 3-101 (104)
2 smart00233 PH Pleckstrin homol 98.4 1.7E-06 3.7E-11 54.9 7.4 94 62-171 3-99 (102)
3 cd00821 PH Pleckstrin homology 98.3 1.1E-06 2.3E-11 55.5 5.1 80 87-171 13-95 (96)
4 cd01246 PH_oxysterol_bp Oxyste 98.3 1.7E-06 3.7E-11 58.1 6.2 88 62-171 1-90 (91)
5 cd01253 PH_beta_spectrin Beta- 98.3 6.3E-06 1.4E-10 58.7 8.7 100 62-171 1-103 (104)
6 cd01250 PH_centaurin Centaurin 98.2 5.5E-06 1.2E-10 55.9 6.9 90 63-171 2-93 (94)
7 cd01252 PH_cytohesin Cytohesin 98.2 2.2E-06 4.7E-11 63.8 4.9 79 88-172 14-112 (125)
8 cd01235 PH_SETbf Set binding f 98.2 6.4E-06 1.4E-10 57.4 7.0 94 63-171 2-99 (101)
9 cd01233 Unc104 Unc-104 pleckst 98.2 2.5E-06 5.3E-11 61.8 4.7 81 88-171 16-96 (100)
10 cd01238 PH_Tec Tec pleckstrin 98.2 6.9E-06 1.5E-10 60.5 7.1 100 62-171 2-105 (106)
11 cd01260 PH_CNK Connector enhan 97.9 1.6E-05 3.5E-10 55.9 4.8 94 62-171 2-95 (96)
12 cd01265 PH_PARIS-1 PARIS-1 ple 97.9 6E-05 1.3E-09 54.5 6.5 90 62-171 1-92 (95)
13 cd01251 PH_centaurin_alpha Cen 97.7 7.8E-05 1.7E-09 54.7 5.8 82 87-171 13-98 (103)
14 cd00900 PH-like Pleckstrin hom 97.7 0.00026 5.7E-09 45.0 7.2 79 88-171 17-98 (99)
15 cd01247 PH_GPBP Goodpasture an 97.6 0.00024 5.2E-09 51.6 7.0 88 62-171 1-90 (91)
16 cd01266 PH_Gab Gab (Grb2-assoc 97.3 0.00057 1.2E-08 50.0 5.3 83 87-170 16-105 (108)
17 cd01263 PH_anillin Anillin Ple 97.3 0.0011 2.3E-08 51.9 6.9 97 62-171 3-121 (122)
18 cd01245 PH_RasGAP_CG5898 RAS G 96.8 0.0032 6.9E-08 47.6 5.5 79 87-171 13-97 (98)
19 cd01244 PH_RasGAP_CG9209 RAS_G 96.2 0.012 2.5E-07 44.2 5.3 78 88-170 19-96 (98)
20 cd01257 PH_IRS Insulin recepto 96.1 0.018 3.8E-07 43.4 5.7 86 61-170 3-99 (101)
21 cd01241 PH_Akt Akt pleckstrin 96.1 0.016 3.5E-07 42.3 5.4 82 87-171 14-100 (102)
22 cd01236 PH_outspread Outspread 96.0 0.026 5.6E-07 42.9 6.4 80 86-170 20-101 (104)
23 cd01264 PH_melted Melted pleck 95.9 0.023 5E-07 43.4 5.7 83 87-171 16-99 (101)
24 cd01230 PH_EFA6 EFA6 Pleckstri 95.5 0.092 2E-06 40.7 7.7 106 63-177 3-115 (117)
25 PF15410 PH_9: Pleckstrin homo 94.4 0.12 2.7E-06 38.8 5.5 100 63-171 3-116 (119)
26 cd01254 PH_PLD Phospholipase D 94.3 0.14 3E-06 38.9 5.7 83 87-171 30-120 (121)
27 cd01219 PH_FGD FGD (faciogenit 93.4 0.22 4.7E-06 36.4 5.2 77 88-171 16-97 (101)
28 cd01249 PH_oligophrenin Oligop 93.2 0.51 1.1E-05 36.9 7.2 94 63-171 2-103 (104)
29 cd01258 PH_syntrophin Syntroph 90.9 1.1 2.5E-05 35.0 6.7 77 87-170 16-106 (108)
30 PRK09039 hypothetical protein; 89.4 0.18 3.8E-06 44.8 1.3 99 17-125 134-249 (343)
31 KOG0521 Putative GTPase activa 88.4 0.54 1.2E-05 46.8 4.0 119 25-171 223-366 (785)
32 PF15413 PH_11: Pleckstrin hom 86.7 2.2 4.8E-05 31.9 5.6 93 63-171 2-111 (112)
33 cd01259 PH_Apbb1ip Apbb1ip (Am 79.8 2.1 4.6E-05 34.4 3.2 95 62-171 2-106 (114)
34 PF04977 DivIC: Septum formati 78.6 3.3 7.2E-05 27.9 3.4 45 22-66 19-68 (80)
35 PF08458 PH_2: Plant pleckstri 76.4 3.8 8.3E-05 32.6 3.7 45 124-170 54-100 (110)
36 PF01166 TSC22: TSC-22/dip/bun 69.0 2.7 5.9E-05 30.7 1.2 30 26-59 13-42 (59)
37 cd01237 Unc112 Unc-112 pleckst 68.9 17 0.00037 28.6 5.7 80 88-171 18-101 (106)
38 PF12814 Mcp5_PH: Meiotic cell 68.6 50 0.0011 25.1 8.6 106 53-170 2-118 (123)
39 PF15188 CCDC-167: Coiled-coil 68.1 6.2 0.00013 30.1 3.0 33 32-64 3-35 (85)
40 cd01239 PH_PKD Protein kinase 66.8 16 0.00035 29.6 5.3 65 89-154 15-79 (117)
41 KOG4797 Transcriptional regula 65.7 5.6 0.00012 32.6 2.6 25 25-49 65-89 (123)
42 KOG0930 Guanine nucleotide exc 63.9 16 0.00036 34.4 5.5 83 86-174 273-376 (395)
43 PRK06342 transcription elongat 63.7 7.5 0.00016 31.7 2.9 41 22-62 36-85 (160)
44 PF13600 DUF4140: N-terminal d 63.1 8.4 0.00018 27.9 2.8 33 19-51 69-101 (104)
45 PHA03230 nuclear protein UL55; 60.3 11 0.00023 32.5 3.4 81 92-172 52-159 (180)
46 PF04537 Herpes_UL55: Herpesvi 60.0 17 0.00036 31.1 4.5 74 92-171 46-153 (169)
47 PRK13922 rod shape-determining 58.8 17 0.00037 30.4 4.3 41 25-65 74-117 (276)
48 PF12852 Cupin_6: Cupin 57.4 20 0.00043 27.8 4.2 43 52-104 2-49 (186)
49 KOG4571 Activating transcripti 55.0 17 0.00037 33.3 4.0 34 26-59 247-280 (294)
50 PF10267 Tmemb_cc2: Predicted 54.9 17 0.00038 33.9 4.1 40 21-60 270-310 (395)
51 PTZ00267 NIMA-related protein 54.6 28 0.0006 30.9 5.1 82 89-173 391-476 (478)
52 PRK00888 ftsB cell division pr 54.3 14 0.00031 28.1 2.9 33 21-53 28-60 (105)
53 PRK04406 hypothetical protein; 51.6 34 0.00073 25.0 4.4 36 29-64 27-62 (75)
54 cd01224 PH_Collybistin Collybi 51.0 19 0.00041 28.4 3.2 51 121-171 52-105 (109)
55 PF11559 ADIP: Afadin- and alp 49.7 27 0.00059 26.9 3.8 39 21-59 74-112 (151)
56 PF02403 Seryl_tRNA_N: Seryl-t 49.7 21 0.00046 25.9 3.1 34 20-53 67-100 (108)
57 PLN02866 phospholipase D 49.5 24 0.00052 37.2 4.4 77 88-172 216-306 (1068)
58 PF10805 DUF2730: Protein of u 49.1 25 0.00055 26.6 3.5 28 26-53 34-61 (106)
59 cd01261 PH_SOS Son of Sevenles 47.2 14 0.0003 28.8 1.9 45 123-171 63-107 (112)
60 PF07321 YscO: Type III secret 46.8 30 0.00066 28.3 3.9 35 24-58 64-98 (152)
61 TIGR02231 conserved hypothetic 44.4 28 0.00061 31.9 3.7 42 17-58 68-109 (525)
62 PF08848 DUF1818: Domain of un 44.3 7 0.00015 31.6 -0.2 65 21-99 28-92 (117)
63 TIGR01462 greA transcription e 44.2 37 0.0008 26.7 3.9 25 39-63 47-71 (151)
64 PF15408 PH_7: Pleckstrin homo 43.8 18 0.00039 29.0 2.1 77 92-171 14-95 (104)
65 PF15456 Uds1: Up-regulated Du 43.7 33 0.00072 27.2 3.5 29 23-51 18-46 (124)
66 PF08317 Spc7: Spc7 kinetochor 43.6 30 0.00064 30.3 3.6 32 27-58 237-268 (325)
67 PF04521 Viral_P18: ssRNA posi 43.1 21 0.00046 29.1 2.4 39 27-65 72-110 (120)
68 PF06401 Alpha-2-MRAP_C: Alpha 43.0 33 0.00072 30.0 3.7 36 23-58 125-163 (214)
69 cd01220 PH_CDEP Chondrocyte-de 42.5 56 0.0012 24.4 4.4 75 90-171 17-95 (99)
70 PRK02793 phi X174 lysis protei 42.4 52 0.0011 23.7 4.1 40 25-64 20-59 (72)
71 cd01223 PH_Vav Vav pleckstrin 41.9 31 0.00067 27.6 3.1 36 135-170 72-108 (116)
72 PRK00295 hypothetical protein; 41.3 66 0.0014 22.9 4.5 38 24-61 16-53 (68)
73 TIGR02209 ftsL_broad cell divi 41.1 35 0.00075 23.6 3.0 32 22-53 26-57 (85)
74 PRK00888 ftsB cell division pr 41.0 29 0.00062 26.5 2.7 42 18-59 32-73 (105)
75 PF12958 DUF3847: Protein of u 39.4 49 0.0011 25.3 3.8 33 22-54 3-35 (86)
76 PF09372 PRANC: PRANC domain; 39.3 18 0.00038 26.1 1.3 38 32-78 41-78 (97)
77 cd00890 Prefoldin Prefoldin is 38.3 32 0.00069 25.0 2.5 25 29-53 96-120 (129)
78 PRK14161 heat shock protein Gr 38.3 32 0.00069 28.7 2.8 35 20-54 19-53 (178)
79 PRK02119 hypothetical protein; 38.2 76 0.0016 23.0 4.4 36 28-63 24-59 (73)
80 PF03836 RasGAP_C: RasGAP C-te 37.3 11 0.00024 29.4 0.0 40 23-62 47-86 (142)
81 PRK05892 nucleoside diphosphat 37.1 42 0.00092 27.1 3.3 24 40-63 53-76 (158)
82 PF10046 BLOC1_2: Biogenesis o 37.0 48 0.001 24.7 3.4 31 26-56 41-71 (99)
83 PRK14147 heat shock protein Gr 36.5 49 0.0011 27.4 3.6 36 19-54 17-52 (172)
84 PRK04325 hypothetical protein; 36.4 75 0.0016 23.0 4.1 38 25-62 21-58 (74)
85 PF08286 Spc24: Spc24 subunit 36.2 9.8 0.00021 28.9 -0.5 28 25-52 18-45 (118)
86 PF04977 DivIC: Septum formati 35.4 38 0.00082 22.7 2.4 35 24-58 28-62 (80)
87 TIGR00999 8a0102 Membrane Fusi 35.4 38 0.00083 26.9 2.7 47 24-70 51-103 (265)
88 PRK14162 heat shock protein Gr 35.3 46 0.001 28.3 3.4 39 16-54 35-73 (194)
89 PF04099 Sybindin: Sybindin-li 35.2 22 0.00047 27.9 1.3 16 140-155 2-18 (142)
90 PF04380 BMFP: Membrane fusoge 34.8 29 0.00062 25.3 1.8 28 25-52 48-75 (79)
91 cd01231 PH_Lnk LNK-family Plec 34.6 82 0.0018 25.5 4.5 71 99-171 34-106 (107)
92 PRK11546 zraP zinc resistance 34.1 45 0.00097 27.5 3.0 25 13-37 82-106 (143)
93 TIGR01461 greB transcription e 33.8 64 0.0014 26.0 3.8 25 39-63 50-74 (156)
94 PRK14158 heat shock protein Gr 33.6 49 0.0011 28.2 3.2 39 16-54 36-74 (194)
95 cd04776 HTH_GnyR Helix-Turn-He 33.4 52 0.0011 25.0 3.1 28 30-57 83-110 (118)
96 PRK14143 heat shock protein Gr 33.1 46 0.001 29.1 3.1 38 18-55 65-102 (238)
97 PF04508 Pox_A_type_inc: Viral 33.1 24 0.00052 21.6 1.0 16 27-42 1-16 (23)
98 PF01920 Prefoldin_2: Prefoldi 32.9 72 0.0016 22.3 3.6 35 26-60 4-38 (106)
99 PF08317 Spc7: Spc7 kinetochor 32.4 54 0.0012 28.7 3.4 43 16-58 205-247 (325)
100 smart00338 BRLZ basic region l 32.0 43 0.00093 22.7 2.2 28 26-53 32-59 (65)
101 PRK14155 heat shock protein Gr 32.0 55 0.0012 28.1 3.3 34 22-55 15-48 (208)
102 cd04779 HTH_MerR-like_sg4 Heli 31.9 77 0.0017 25.0 3.9 39 21-59 75-113 (134)
103 TIGR03214 ura-cupin putative a 31.3 1.4E+02 0.003 25.5 5.6 85 63-150 126-212 (260)
104 TIGR01843 type_I_hlyD type I s 30.9 63 0.0014 27.3 3.5 6 32-37 156-161 (423)
105 cd01242 PH_ROK Rok (Rho- assoc 30.9 71 0.0015 25.7 3.6 53 89-146 19-82 (112)
106 PRK00846 hypothetical protein; 30.7 1.2E+02 0.0027 22.7 4.6 39 27-65 27-65 (77)
107 PF10805 DUF2730: Protein of u 30.7 52 0.0011 24.9 2.7 32 26-57 64-95 (106)
108 PF04380 BMFP: Membrane fusoge 30.6 60 0.0013 23.6 2.9 31 19-49 49-79 (79)
109 PF00170 bZIP_1: bZIP transcri 30.6 49 0.0011 22.4 2.3 22 27-48 40-61 (64)
110 PF08657 DASH_Spc34: DASH comp 30.6 45 0.00097 29.4 2.6 38 17-54 177-214 (259)
111 cd06155 eu_AANH_C_1 A group of 30.1 50 0.0011 23.8 2.4 22 42-63 24-45 (101)
112 PF15406 PH_6: Pleckstrin homo 29.7 1.1E+02 0.0024 24.9 4.4 63 99-171 48-111 (112)
113 KOG4010 Coiled-coil protein TP 29.6 47 0.001 29.4 2.6 45 18-62 35-83 (208)
114 PRK02119 hypothetical protein; 29.5 67 0.0015 23.3 3.0 30 28-57 3-32 (73)
115 PRK00736 hypothetical protein; 29.1 1.4E+02 0.003 21.3 4.5 42 21-62 13-54 (68)
116 PF04728 LPP: Lipoprotein leuc 29.1 67 0.0015 23.1 2.8 34 20-53 17-50 (56)
117 PF07106 TBPIP: Tat binding pr 29.0 77 0.0017 24.9 3.5 27 26-52 78-104 (169)
118 PF14301 DUF4376: Domain of un 28.9 85 0.0018 22.3 3.4 43 8-52 55-101 (111)
119 PF09325 Vps5: Vps5 C terminal 28.9 76 0.0017 25.1 3.5 33 27-59 163-195 (236)
120 PF09726 Macoilin: Transmembra 28.5 42 0.00091 33.3 2.3 33 24-56 422-454 (697)
121 PF11382 DUF3186: Protein of u 28.3 77 0.0017 27.9 3.7 35 25-59 37-71 (308)
122 PF14257 DUF4349: Domain of un 28.1 91 0.002 26.0 3.9 45 25-69 160-204 (262)
123 TIGR01242 26Sp45 26S proteasom 28.0 1.1E+02 0.0025 26.4 4.6 44 24-67 3-46 (364)
124 KOG4593 Mitotic checkpoint pro 27.9 41 0.0009 34.2 2.2 42 15-56 270-312 (716)
125 PRK01885 greB transcription el 27.8 76 0.0016 25.6 3.3 24 39-62 52-75 (157)
126 PF06248 Zw10: Centromere/kine 27.7 71 0.0015 29.9 3.5 46 15-61 71-116 (593)
127 PF07862 Nif11: Nitrogen fixat 27.7 58 0.0013 21.0 2.2 22 50-71 26-47 (49)
128 KOG1760 Molecular chaperone Pr 27.6 58 0.0013 27.1 2.6 28 23-50 91-118 (131)
129 PF13600 DUF4140: N-terminal d 27.5 92 0.002 22.5 3.4 34 23-56 66-99 (104)
130 PRK00226 greA transcription el 27.4 79 0.0017 24.9 3.3 23 40-62 53-75 (157)
131 KOG3850 Predicted membrane pro 27.4 80 0.0017 30.7 3.9 41 20-60 317-358 (455)
132 PRK14144 heat shock protein Gr 27.1 71 0.0015 27.5 3.2 37 18-54 43-79 (199)
133 PHA01750 hypothetical protein 27.1 71 0.0015 24.5 2.8 32 23-54 38-69 (75)
134 COG3167 PilO Tfp pilus assembl 26.9 44 0.00094 29.7 1.9 57 16-72 45-125 (211)
135 PRK14154 heat shock protein Gr 26.9 68 0.0015 27.7 3.0 34 21-54 53-86 (208)
136 COG1342 Predicted DNA-binding 26.8 48 0.001 26.4 2.0 51 11-61 21-74 (99)
137 PF01025 GrpE: GrpE; InterPro 26.6 35 0.00075 26.3 1.1 34 20-53 11-44 (165)
138 PF11853 DUF3373: Protein of u 26.4 41 0.00089 32.6 1.8 14 65-78 69-82 (489)
139 cd04790 HTH_Cfa-like_unk Helix 26.3 11 0.00024 30.4 -1.7 29 32-60 79-107 (172)
140 COG3879 Uncharacterized protei 26.1 87 0.0019 28.1 3.6 31 31-61 54-84 (247)
141 PRK13169 DNA replication intia 25.9 98 0.0021 24.4 3.5 40 20-59 15-54 (110)
142 PF11819 DUF3338: Domain of un 25.8 1.6E+02 0.0034 24.4 4.8 48 30-81 35-82 (138)
143 PF04889 Cwf_Cwc_15: Cwf15/Cwc 25.6 1E+02 0.0022 26.9 3.9 51 23-73 149-205 (244)
144 PF06156 DUF972: Protein of un 25.4 97 0.0021 24.1 3.4 40 20-59 15-54 (107)
145 TIGR00219 mreC rod shape-deter 25.4 1.8E+02 0.0038 25.5 5.3 65 25-100 71-140 (283)
146 PF07047 OPA3: Optic atrophy 3 25.4 29 0.00062 27.3 0.5 20 34-53 112-131 (134)
147 PF05384 DegS: Sensor protein 25.2 1.1E+02 0.0024 25.3 3.9 39 23-61 23-61 (159)
148 PF04201 TPD52: Tumour protein 25.1 69 0.0015 27.2 2.7 21 22-42 24-44 (162)
149 PF05308 Mito_fiss_reg: Mitoch 25.1 32 0.0007 30.2 0.8 21 20-40 122-142 (253)
150 cd01248 PH_PLC Phospholipase C 24.9 1.7E+02 0.0037 21.5 4.5 75 92-170 23-113 (115)
151 PF07926 TPR_MLP1_2: TPR/MLP1/ 24.3 1.2E+02 0.0027 23.3 3.8 40 22-61 5-44 (132)
152 PF14019 DUF4235: Protein of u 24.2 36 0.00078 24.8 0.8 20 70-89 22-41 (78)
153 COG1792 MreC Cell shape-determ 24.0 1.7E+02 0.0038 25.7 5.0 67 25-101 71-141 (284)
154 PRK14127 cell division protein 23.9 59 0.0013 25.6 2.0 37 19-55 29-65 (109)
155 PF04568 IATP: Mitochondrial A 23.3 1.1E+02 0.0024 23.8 3.4 30 28-57 70-99 (100)
156 PF04111 APG6: Autophagy prote 23.1 94 0.002 27.6 3.3 10 31-40 61-70 (314)
157 cd07596 BAR_SNX The Bin/Amphip 23.1 1.3E+02 0.0027 23.0 3.6 32 27-58 145-176 (218)
158 PF04102 SlyX: SlyX; InterPro 22.8 87 0.0019 22.1 2.5 41 21-61 12-52 (69)
159 cd04769 HTH_MerR2 Helix-Turn-H 22.7 82 0.0018 23.4 2.5 31 23-53 82-112 (116)
160 PF10186 Atg14: UV radiation r 22.5 1.3E+02 0.0029 24.3 3.8 17 25-41 75-91 (302)
161 PF14784 ECIST_Cterm: C-termin 22.3 1.1E+02 0.0024 24.7 3.2 73 92-173 22-113 (126)
162 PRK14159 heat shock protein Gr 22.0 95 0.0021 26.0 2.9 32 23-54 26-57 (176)
163 PF14357 DUF4404: Domain of un 21.9 85 0.0018 23.2 2.4 33 26-58 3-35 (85)
164 PRK05771 V-type ATP synthase s 21.5 1.5E+02 0.0033 28.1 4.5 60 15-74 210-283 (646)
165 PF01920 Prefoldin_2: Prefoldi 21.5 84 0.0018 22.0 2.2 31 27-57 69-99 (106)
166 KOG3751 Growth factor receptor 21.4 1E+02 0.0022 31.1 3.4 103 53-170 307-421 (622)
167 cd01222 PH_clg Clg (common-sit 21.3 94 0.002 23.5 2.5 32 139-170 59-92 (97)
168 PRK14151 heat shock protein Gr 21.2 1.1E+02 0.0023 25.5 3.1 32 23-54 23-54 (176)
169 PRK14146 heat shock protein Gr 21.1 1.2E+02 0.0026 26.1 3.5 33 22-54 56-88 (215)
170 TIGR01843 type_I_hlyD type I s 20.8 1.3E+02 0.0027 25.5 3.5 25 27-51 144-168 (423)
171 PF07106 TBPIP: Tat binding pr 20.7 1.4E+02 0.0031 23.4 3.6 29 26-54 71-99 (169)
172 PF11333 DUF3135: Protein of u 20.5 1.5E+02 0.0032 22.3 3.4 36 26-61 17-58 (83)
173 PF08690 GET2: GET complex sub 20.5 1.1E+02 0.0025 27.4 3.3 31 23-58 1-33 (302)
174 TIGR03021 pilP_fam type IV pil 20.3 1.1E+02 0.0023 24.1 2.8 72 24-100 2-77 (119)
175 KOG3640 Actin binding protein 20.3 49 0.0011 35.2 1.1 77 90-172 1008-1105(1116)
176 cd01107 HTH_BmrR Helix-Turn-He 20.2 86 0.0019 23.1 2.1 18 37-54 85-102 (108)
177 PF14662 CCDC155: Coiled-coil 20.1 1.1E+02 0.0025 26.6 3.1 32 23-54 63-94 (193)
178 COG1579 Zn-ribbon protein, pos 20.1 1.3E+02 0.0029 26.6 3.6 32 25-56 87-118 (239)
No 1
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.79 E-value=1.1e-08 Score=67.13 Aligned_cols=95 Identities=29% Similarity=0.483 Sum_probs=81.5
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeec---CCCCCCcceeehhhhccCCCCcc-cCCCc
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLST---DLSPQDSTVLSDVVEVASLPSIT-RENGE 137 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sT---DLsPQdStllsDIVEVg~lP~f~-rEdge 137 (202)
..|||+.++ .-...|=+||+||.|.+|+||-..+ +..|..++-|.++ +|...++.. ....+
T Consensus 3 ~~G~L~~~~--------------~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~ 67 (104)
T PF00169_consen 3 KEGWLLKKS--------------SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKK 67 (104)
T ss_dssp EEEEEEEEE--------------SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSS
T ss_pred EEEEEEEEC--------------CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccC
Confidence 479999999 2345799999999999999999999 7999999999999 888777764 24457
Q ss_pred eEEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 138 MQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 138 ~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
..++|.|.+..|=.|..+..++-+...|+.+|+.
T Consensus 68 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~ 101 (104)
T PF00169_consen 68 RKNCFEITTPNGKSYLFSAESEEERKRWIQAIQK 101 (104)
T ss_dssp SSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHH
Confidence 7889999999997787777888999999999985
No 2
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.43 E-value=1.7e-06 Score=54.91 Aligned_cols=94 Identities=24% Similarity=0.418 Sum_probs=73.5
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecC---CCCCCcceeehhhhccCCCCcccCCCce
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEM 138 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTD---LsPQdStllsDIVEVg~lP~f~rEdge~ 138 (202)
..|||+.+++= .-..|-+||++|.+.++.||-...+ .+|...+.+.++ .|...++... +..
T Consensus 3 ~~G~l~~~~~~-------------~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~--~~~ 66 (102)
T smart00233 3 KEGWLYKKSGG-------------KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS--AKK 66 (102)
T ss_pred eeEEEEEeCCC-------------ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc--CCC
Confidence 57999887541 3345999999999999999998877 788899999987 7776665432 345
Q ss_pred EEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 139 QYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 139 ~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
.++|.|.+..+-.|..+..+......|+.+|+.
T Consensus 67 ~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~ 99 (102)
T smart00233 67 PHCFEIKTADRRSYLLQAESEEEREEWVDALRK 99 (102)
T ss_pred ceEEEEEecCCceEEEEcCCHHHHHHHHHHHHH
Confidence 689999999995666666677788899999974
No 3
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.35 E-value=1.1e-06 Score=55.49 Aligned_cols=80 Identities=28% Similarity=0.453 Sum_probs=65.2
Q ss_pred ccccceeeEEeecceeEeeeeecC---CCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehh
Q 028920 87 VDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVY 163 (202)
Q Consensus 87 VDDWlpRFVVl~G~ciffyL~sTD---LsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVd 163 (202)
...|-+|+++|.+.++++|-...+ .+|+..+.+.+ ++|...+.-. ...++|.|.+.++-.|.-...++....
T Consensus 13 ~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~~~~~~~~~~s~~~~~ 87 (96)
T cd00821 13 RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPDGRSYLLQAESEEERE 87 (96)
T ss_pred hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCCCcEEEEEeCCHHHHH
Confidence 678999999999999999999988 79999999999 7777665443 356899999887655555555677899
Q ss_pred hHHHHhhc
Q 028920 164 SWLSALQT 171 (202)
Q Consensus 164 sWL~al~~ 171 (202)
.|+.+|+.
T Consensus 88 ~W~~~l~~ 95 (96)
T cd00821 88 EWIEALQS 95 (96)
T ss_pred HHHHHHhc
Confidence 99999974
No 4
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.34 E-value=1.7e-06 Score=58.08 Aligned_cols=88 Identities=24% Similarity=0.457 Sum_probs=68.6
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecCC--CCCCcceeehhhhccCCCCcccCCCceE
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL--SPQDSTVLSDVVEVASLPSITRENGEMQ 139 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDL--sPQdStllsDIVEVg~lP~f~rEdge~~ 139 (202)
++|||+-++.- ...|-.||+||+|.+++||---.+. .|.+++.|.+... .++....
T Consensus 1 ~~G~L~k~~~~--------------~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~--------~~~~~~~ 58 (91)
T cd01246 1 VEGWLLKWTNY--------------LKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVI--------SEDDSDD 58 (91)
T ss_pred CeEEEEEeccc--------------CCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEE--------EECCCCC
Confidence 46888876531 2579999999999999999988887 8999988887531 1112226
Q ss_pred EEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 140 YCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 140 yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
++|.|.|.+|=.|.....+.-....|+.||+.
T Consensus 59 ~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 59 KCFTIDTGGDKTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred cEEEEEcCCCCEEEEECCCHHHHHHHHHHHHh
Confidence 89999999877777777777789999999974
No 5
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.30 E-value=6.3e-06 Score=58.66 Aligned_cols=100 Identities=16% Similarity=0.231 Sum_probs=66.8
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecCC-CCCCcceeehh--hhccCCCCcccCCCce
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL-SPQDSTVLSDV--VEVASLPSITRENGEM 138 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDL-sPQdStllsDI--VEVg~lP~f~rEdge~ 138 (202)
+.|||+.+..|.+. |--+. .-.|-.||+||+|..++||--..+. .+.+++.--++ +.|...++. ..-
T Consensus 1 ~~g~l~rk~~~~~~-g~~~~-----~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~----~k~ 70 (104)
T cd01253 1 MEGSLERKHELESG-GKKAS-----NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDY----TKK 70 (104)
T ss_pred CCceEeEEEEeecC-CcccC-----CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCc----ccC
Confidence 47999999999987 44433 6789999999999999999754332 11122111111 222222222 234
Q ss_pred EEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 139 QYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 139 ~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
.++|.|.+..|-.|.=+..+.-.+.+|+.||++
T Consensus 71 ~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 71 KHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred ceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 589999988986665555566689999999985
No 6
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.24 E-value=5.5e-06 Score=55.92 Aligned_cols=90 Identities=21% Similarity=0.339 Sum_probs=64.6
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecC--CCCCCcceeehhhhccCCCCcccCCCceEE
Q 028920 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITRENGEMQY 140 (202)
Q Consensus 63 SgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTD--LsPQdStllsDIVEVg~lP~f~rEdge~~y 140 (202)
+|||+-|+.-. ...|-+||+||.+.+++||.--.+ ..|..++-+.+. -|...| +.++-.+
T Consensus 2 ~G~L~kk~~~~-------------~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~-~v~~~~----~~~~~~~ 63 (94)
T cd01250 2 QGYLYKRSSKS-------------NKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRC-TVRHNG----KQPDRRF 63 (94)
T ss_pred cceEEEECCCc-------------CCCceEEEEEEeCCeEEEEcCCcccccccceEEeccce-EEecCc----cccCCce
Confidence 58998876211 467999999999999999987776 778878777653 133332 2224578
Q ss_pred EEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 141 CFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 141 aFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
+|.|.|...--+-|+ .+.-....|+.||+.
T Consensus 64 ~f~i~~~~~~~~f~a-~s~~~~~~Wi~al~~ 93 (94)
T cd01250 64 CFEVISPTKTWHFQA-DSEEERDDWISAIQE 93 (94)
T ss_pred EEEEEcCCcEEEEEC-CCHHHHHHHHHHHhc
Confidence 999998774444454 555588999999974
No 7
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.21 E-value=2.2e-06 Score=63.76 Aligned_cols=79 Identities=16% Similarity=0.524 Sum_probs=63.3
Q ss_pred cccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecc------------------
Q 028920 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG------------------ 149 (202)
Q Consensus 88 DDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhG------------------ 149 (202)
-.|=.||+||++.+++||--.+|-.|.+++.|.++. |...+. ...+++|.|.+..+
T Consensus 14 ~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~-v~~~~~-----~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~ 87 (125)
T cd01252 14 KTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVS-IREVED-----PSKPFCFELFSPSDKQQIKACKTESDGRVVEG 87 (125)
T ss_pred CCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcE-EEEccc-----CCCCeeEEEECCcccccccccccccccccccc
Confidence 679999999999999999888999999999999743 444432 34578998887665
Q ss_pred --eeeeecccceeehhhHHHHhhcc
Q 028920 150 --LRIECSSISKIQVYSWLSALQTD 172 (202)
Q Consensus 150 --LR~ECSS~skiQVdsWL~al~~d 172 (202)
-.|.++..+.-+...|+.||+.=
T Consensus 88 ~~~~~~~~A~s~~e~~~Wi~al~~~ 112 (125)
T cd01252 88 NHSVYRISAANDEEMDEWIKSIKAS 112 (125)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHH
Confidence 35667777888999999999863
No 8
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.21 E-value=6.4e-06 Score=57.42 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=64.1
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEEee--cceeEeeeeecCCCCCCcceeehhhhccC-CCCcc-cCCCce
Q 028920 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLH--GSCIFFYLLSTDLSPQDSTVLSDVVEVAS-LPSIT-RENGEM 138 (202)
Q Consensus 63 SgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~--G~ciffyL~sTDLsPQdStllsDIVEVg~-lP~f~-rEdge~ 138 (202)
+|||+-+.. .+..|-.||+||. +.+++||--.+|-.|.+++-|+++..|-. .|+.. +.+...
T Consensus 2 ~G~L~K~g~--------------~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~ 67 (101)
T cd01235 2 EGYLYKRGA--------------LLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSR 67 (101)
T ss_pred eEEEEEcCC--------------CCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCC
Confidence 588887652 2568999999999 45999998889999999999999866654 23322 222233
Q ss_pred EEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 139 QYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 139 ~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
.+.|-|.| ++=.|.=...++-..+.|+.||+.
T Consensus 68 ~~~f~i~t-~~r~~~~~a~s~~e~~~Wi~ai~~ 99 (101)
T cd01235 68 KGFFDLKT-SKRTYNFLAENINEAQRWKEKIQQ 99 (101)
T ss_pred ceEEEEEe-CCceEEEECCCHHHHHHHHHHHHh
Confidence 44454444 443444434445578889999975
No 9
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.19 E-value=2.5e-06 Score=61.84 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=61.2
Q ss_pred cccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehhhHHH
Q 028920 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLS 167 (202)
Q Consensus 88 DDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~ 167 (202)
--|-.||+||++.+++||-..+|-.|.+.+-|.++ .|-..|.-.+-.| -.++|.|.|.+-- |..+..|+-+..+|+.
T Consensus 16 k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~~~~~~~~~-~~~~F~I~t~~rt-~~~~A~s~~e~~~Wi~ 92 (100)
T cd01233 16 SGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTA-RVEHSEDQAAMVK-GPNTFAVCTKHRG-YLFQALSDKEMIDWLY 92 (100)
T ss_pred CCcEEEEEEEECCEEEEEccCCCccEeeEEEeccc-EEEEccchhhhcC-CCcEEEEECCCCE-EEEEcCCHHHHHHHHH
Confidence 57999999999999999999999999999999965 3333322211111 2479999887654 6666667779999999
Q ss_pred Hhhc
Q 028920 168 ALQT 171 (202)
Q Consensus 168 al~~ 171 (202)
||++
T Consensus 93 ai~~ 96 (100)
T cd01233 93 ALNP 96 (100)
T ss_pred Hhhh
Confidence 9975
No 10
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.19 E-value=6.9e-06 Score=60.54 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=70.6
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecC--CCCCCcceeehhhhccCCCCccc--CCCc
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITR--ENGE 137 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTD--LsPQdStllsDIVEVg~lP~f~r--Edge 137 (202)
.+|||+-|..=.-.. -...|-.|++||.+.|++||=-..| -.|-+++-|+++..|-..+.-.. -..+
T Consensus 2 k~g~l~Kr~~~~~~~---------~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~ 72 (106)
T cd01238 2 LESILVKRSQQKKKT---------SPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPER 72 (106)
T ss_pred cceeeeeeccCCCCC---------CCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccc
Confidence 468998886322222 2347999999999999999977666 47999999999754433332221 1223
Q ss_pred eEEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 138 MQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 138 ~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
..|+|=|.|... .|.....++-+-+.|+.||+.
T Consensus 73 ~~~~F~i~t~~r-~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 73 FKYPFQVVHDEG-TLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cCccEEEEeCCC-eEEEEcCCHHHHHHHHHHHHh
Confidence 468998988543 566677788899999999974
No 11
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.94 E-value=1.6e-05 Score=55.88 Aligned_cols=94 Identities=22% Similarity=0.417 Sum_probs=67.6
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEE
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYC 141 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~ya 141 (202)
..|||+-++- .|. .-+.-|-.||+||.|.+++||---+|-.|.+.+.|... .|-.. .+ ....|+
T Consensus 2 ~~GwL~kk~~----~~g------~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~----~~-~~k~~~ 65 (96)
T cd01260 2 CDGWLWKRKK----PGG------FMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGF-TIESA----KE-VKKKYA 65 (96)
T ss_pred ceeEEEEecC----CCC------ccccCceeEEEEEECCEEEEECCCCCCccceEEEccCC-EEEEc----hh-cCCceE
Confidence 4799998861 111 13567999999999999999999899999999888863 23222 12 236789
Q ss_pred EEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 142 FYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 142 FyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
|-|.|.+.=.|.=+..++-.+..|+.||+.
T Consensus 66 F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 66 FKVCHPVYKSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred EEECCCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 999877643444445556688999999974
No 12
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.85 E-value=6e-05 Score=54.48 Aligned_cols=90 Identities=28% Similarity=0.376 Sum_probs=66.0
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeec--ceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceE
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG--SCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQ 139 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G--~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~ 139 (202)
|+|||+-+. |.- -+--|=.|++||.+ .-++||=-..|-.|.+++-|.+++.+-. | . +..
T Consensus 1 l~GyL~K~g------~~~------~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~-~----~--~~~ 61 (95)
T cd01265 1 LCGYLHKIE------GKG------PLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYD-P----R--EEK 61 (95)
T ss_pred CcccEEEec------CCC------CCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcC-C----C--CCC
Confidence 679998764 111 16679999999974 4577776668999999999998664421 1 1 125
Q ss_pred EEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 140 YCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 140 yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
+.|-|.|.+- -|.-...|+-+.+.|+.||+.
T Consensus 62 ~~F~i~t~~r-~y~l~A~s~~e~~~Wi~al~~ 92 (95)
T cd01265 62 GRFEIHSNNE-VIALKASSDKQMNYWLQALQS 92 (95)
T ss_pred CEEEEEcCCc-EEEEECCCHHHHHHHHHHHHh
Confidence 6899988644 477777888899999999974
No 13
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.75 E-value=7.8e-05 Score=54.74 Aligned_cols=82 Identities=18% Similarity=0.317 Sum_probs=64.0
Q ss_pred ccccceeeEEeecceeEeeeeecCCCCCCcceeehhh---hcc-CCCCcccCCCceEEEEEEEeecceeeeecccceeeh
Q 028920 87 VDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVV---EVA-SLPSITRENGEMQYCFYILTRHGLRIECSSISKIQV 162 (202)
Q Consensus 87 VDDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIV---EVg-~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQV 162 (202)
+.-|=-||.||+|..++||=-..|-.|.+++.|..+. +|. .+|.-. ++...|+|-|.|- +=.|..+-.++-+.
T Consensus 13 ~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~--~~~~~~~F~i~t~-~Rty~l~a~s~~e~ 89 (103)
T cd01251 13 TEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGT--QGNHWYGVTLVTP-ERKFLFACETEQDR 89 (103)
T ss_pred CCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccc--cccccceEEEEeC-CeEEEEECCCHHHH
Confidence 3569999999999999999777899999999998654 231 123211 3444579998885 77898888999999
Q ss_pred hhHHHHhhc
Q 028920 163 YSWLSALQT 171 (202)
Q Consensus 163 dsWL~al~~ 171 (202)
+.|+.||+.
T Consensus 90 ~~Wi~ai~~ 98 (103)
T cd01251 90 REWIAAFQN 98 (103)
T ss_pred HHHHHHHHH
Confidence 999999985
No 14
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=97.72 E-value=0.00026 Score=44.98 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=59.7
Q ss_pred cccceeeEEeecceeEeeeeecCCCCC-CcceeehhhhccCCCCcccCCCceEEEEEEEeec--ceeeeecccceeehhh
Q 028920 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQ-DSTVLSDVVEVASLPSITRENGEMQYCFYILTRH--GLRIECSSISKIQVYS 164 (202)
Q Consensus 88 DDWlpRFVVl~G~ciffyL~sTDLsPQ-dStllsDIVEVg~lP~f~rEdge~~yaFyIlTrh--GLR~ECSS~skiQVds 164 (202)
..|-+|+++|.+.++.||-...+-.+- .+..+.++. |...+.-. +..++|.|.+.. +-.+.-+..++-....
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~----~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~ 91 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS----DDPNCFAIVTKDRGRRVFVFQADSEEEAQE 91 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCC----CCCceEEEECCCCCcEEEEEEcCCHHHHHH
Confidence 579999999999999999988887776 466666655 65554322 456899999885 5566656666678899
Q ss_pred HHHHhhc
Q 028920 165 WLSALQT 171 (202)
Q Consensus 165 WL~al~~ 171 (202)
|+.+|+.
T Consensus 92 W~~al~~ 98 (99)
T cd00900 92 WVEALQQ 98 (99)
T ss_pred HHHHHhc
Confidence 9999863
No 15
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.64 E-value=0.00024 Score=51.56 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=65.9
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecC--CCCCCcceeehhhhccCCCCcccCCCceE
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD--LSPQDSTVLSDVVEVASLPSITRENGEMQ 139 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTD--LsPQdStllsDIVEVg~lP~f~rEdge~~ 139 (202)
++|||+-++.. +.-|=+||.||++.+++||---.| ..|.+++-|+..+-+.. +.+ .
T Consensus 1 ~~G~L~K~~~~--------------~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~------~~~--~ 58 (91)
T cd01247 1 TNGVLSKWTNY--------------INGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAH------EFD--E 58 (91)
T ss_pred CceEEEEeccc--------------cCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcC------CCC--C
Confidence 47888877642 356999999999999999988666 45899999997542211 222 3
Q ss_pred EEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 140 YCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 140 yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
..|-|.+..+=.|.=...++-+.+.|+.||+.
T Consensus 59 ~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 59 NRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 67888776666777777788889999999974
No 16
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.30 E-value=0.00057 Score=49.98 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=60.9
Q ss_pred ccccceeeEEeecce-------eEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccce
Q 028920 87 VDDWLPRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISK 159 (202)
Q Consensus 87 VDDWlpRFVVl~G~c-------iffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~sk 159 (202)
...|=.||.||++.. ++||=-..|-.|.+++.|.++.+|..=+..+..+....|.|-|.|-+ =.|.-...++
T Consensus 16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~-r~y~l~A~s~ 94 (108)
T cd01266 16 RTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIV-RDLYLVAKNE 94 (108)
T ss_pred ccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEEeCC-ccEEEEECCH
Confidence 468999999999865 58887778899999999999877642111222223345789888743 2466667777
Q ss_pred eehhhHHHHhh
Q 028920 160 IQVYSWLSALQ 170 (202)
Q Consensus 160 iQVdsWL~al~ 170 (202)
-.++.|+++|+
T Consensus 95 ee~~~Wi~~I~ 105 (108)
T cd01266 95 EEMTLWVNCIC 105 (108)
T ss_pred HHHHHHHHHHH
Confidence 79999999995
No 17
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.28 E-value=0.0011 Score=51.91 Aligned_cols=97 Identities=22% Similarity=0.300 Sum_probs=64.3
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecC---CCCCCcceeehhhhccCCCCcccCCCce
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTD---LSPQDSTVLSDVVEVASLPSITRENGEM 138 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTD---LsPQdStllsDIVEVg~lP~f~rEdge~ 138 (202)
.+|||.+-- =+ ..+..|=+||.||+|.||+||-.-.| -.|.+++-|.+..-.-. ..-.|+.---
T Consensus 3 ~~GfL~~~q----~~--------~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v-~~~~r~~c~R 69 (122)
T cd01263 3 YHGFLTMFE----DT--------SGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEG-ASAVRDICAR 69 (122)
T ss_pred cceeEEEEe----cc--------CCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCccccc-ccCChhhcCC
Confidence 368988743 11 26679999999999999999987777 56888888877544222 1112333345
Q ss_pred EEEEEEEeecce-------------------eeeecccceeehhhHHHHhhc
Q 028920 139 QYCFYILTRHGL-------------------RIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 139 ~yaFyIlTrhGL-------------------R~ECSS~skiQVdsWL~al~~ 171 (202)
.++|.|-+.|.- ++-=|--++-..++|++||+.
T Consensus 70 p~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~ 121 (122)
T cd01263 70 PNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNS 121 (122)
T ss_pred CCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhc
Confidence 568888543322 122234566677899999974
No 18
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.81 E-value=0.0032 Score=47.61 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=62.2
Q ss_pred ccccceeeEEeec----ceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecc--eeeeeccccee
Q 028920 87 VDDWLPRFIVLHG----SCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG--LRIECSSISKI 160 (202)
Q Consensus 87 VDDWlpRFVVl~G----~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhG--LR~ECSS~ski 160 (202)
+--|=-|++||+| +|++||=-.+|..|=|.+.|.++ -|-++.. .--|. .|||=|.+..+ .-|-|.+. -
T Consensus 13 ~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~-~V~~v~d--s~~~r-~~cFel~~~~~~~~y~~~a~~--~ 86 (98)
T cd01245 13 TKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDA-YLYPVHD--SLFGR-PNCFQIVERALPTVYYSCRSS--E 86 (98)
T ss_pred ccccceeEEEEecCCCCceEEEEcCCCCCCccceeecccc-EEEEccc--cccCC-CeEEEEecCCCCeEEEEeCCH--H
Confidence 5678899999999 99999999999999998888877 4443321 11122 49999998877 66778877 8
Q ss_pred ehhhHHHHhhc
Q 028920 161 QVYSWLSALQT 171 (202)
Q Consensus 161 QVdsWL~al~~ 171 (202)
+-|.|+.+|+.
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 89999999974
No 19
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.23 E-value=0.012 Score=44.17 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=59.3
Q ss_pred cccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehhhHHH
Q 028920 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLS 167 (202)
Q Consensus 88 DDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~ 167 (202)
..|=-|++||.+.-++||= .-.-.|-+++-|++|.=|-.+.+-.. +..|+|=|.|--+ -|.+...++.+-+.|++
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k-~~~~~~~g~I~L~~i~~ve~v~~~~~---~~~~~fqivt~~r-~~yi~a~s~~E~~~Wi~ 93 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAK-DVQCKKSALIKLAAIKGTEPLSDKSF---VNVDIITIVCEDD-TMQLQFEAPVEATDWLN 93 (98)
T ss_pred cCCceeEEEECCCEEEEEC-CCCCceeeeEEccceEEEEEcCCccc---CCCceEEEEeCCC-eEEEECCCHHHHHHHHH
Confidence 5899999999999999995 33457888999999876544443211 1248999988654 56777777889999999
Q ss_pred Hhh
Q 028920 168 ALQ 170 (202)
Q Consensus 168 al~ 170 (202)
||+
T Consensus 94 al~ 96 (98)
T cd01244 94 ALE 96 (98)
T ss_pred HHh
Confidence 997
No 20
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.09 E-value=0.018 Score=43.43 Aligned_cols=86 Identities=21% Similarity=0.317 Sum_probs=63.9
Q ss_pred hcceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecc------eeEeeeeecC-----CCCCCcceeehhhhccCCC
Q 028920 61 RLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS------CIFFYLLSTD-----LSPQDSTVLSDVVEVASLP 129 (202)
Q Consensus 61 rlSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~------ciffyL~sTD-----LsPQdStllsDIVEVg~lP 129 (202)
+.+|||... -.|=-||.||++. =|+||---.. -.|.++|-|.++..|-..|
T Consensus 3 ~k~GyL~K~------------------K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~ 64 (101)
T cd01257 3 RKSGYLRKQ------------------KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRA 64 (101)
T ss_pred cEEEEEeEe------------------cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecc
Confidence 568999885 3566699999877 3667755443 6799999999999887654
Q ss_pred CcccCCCceEEEEEEEeecceeeeecccceeehhhHHHHhh
Q 028920 130 SITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQ 170 (202)
Q Consensus 130 ~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~ 170 (202)
. ..-+|+|=|.|... .|.=...++-.-+.|+.+|.
T Consensus 65 d-----~k~~~~f~i~t~dr-~f~l~aese~E~~~Wi~~i~ 99 (101)
T cd01257 65 D-----AKHRHLIALYTRDE-YFAVAAENEAEQDSWYQALL 99 (101)
T ss_pred c-----cccCeEEEEEeCCc-eEEEEeCCHHHHHHHHHHHh
Confidence 3 34468999999764 45445556777899999984
No 21
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.08 E-value=0.016 Score=42.34 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=46.4
Q ss_pred ccccceeeEEee-cceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEE----eecceeeeecccceee
Q 028920 87 VDDWLPRFIVLH-GSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYIL----TRHGLRIECSSISKIQ 161 (202)
Q Consensus 87 VDDWlpRFVVl~-G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIl----TrhGLR~ECSS~skiQ 161 (202)
+.-|=+|++||+ +.+++||---.+-.+++.+.|..+.=-+..+ ...++.-.++|.|. |..-=|+-|. -++-.
T Consensus 14 ~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~--~~~~~~~~~~F~i~~~~~~~~~~r~f~a-~s~ee 90 (102)
T cd01241 14 IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQL--MKTERPRPNTFIIRCLQWTTVIERTFHV-ESPEE 90 (102)
T ss_pred CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeee--eeccCCCcceEEEEeccCCcccCEEEEe-CCHHH
Confidence 678999999999 8888877654332233344444432101000 01123344888886 2111233343 45558
Q ss_pred hhhHHHHhhc
Q 028920 162 VYSWLSALQT 171 (202)
Q Consensus 162 VdsWL~al~~ 171 (202)
.++|+.||+.
T Consensus 91 ~~eWi~ai~~ 100 (102)
T cd01241 91 REEWIHAIQT 100 (102)
T ss_pred HHHHHHHHHh
Confidence 8999999974
No 22
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.03 E-value=0.026 Score=42.90 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=56.2
Q ss_pred CccccceeeEEee-cceeEeeeee-cCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehh
Q 028920 86 DVDDWLPRFIVLH-GSCIFFYLLS-TDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVY 163 (202)
Q Consensus 86 dVDDWlpRFVVl~-G~ciffyL~s-TDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVd 163 (202)
-+-.|=.|+.||. |.-++||.-. .|-.|++++-|++..+|-.-... . .-.++|-|.|.-- -|.=.--++-..+
T Consensus 20 ~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~---~-~~~~~f~I~tp~R-~f~l~Aete~E~~ 94 (104)
T cd01236 20 RSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEAR---T-GQKFSICILTPDK-EHFIKAETKEEIS 94 (104)
T ss_pred eeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccc---c-CCccEEEEECCCc-eEEEEeCCHHHHH
Confidence 3789999999996 5667766544 47789999999988876422111 1 1258899888743 3344445667789
Q ss_pred hHHHHhh
Q 028920 164 SWLSALQ 170 (202)
Q Consensus 164 sWL~al~ 170 (202)
.|+++|.
T Consensus 95 ~Wi~~l~ 101 (104)
T cd01236 95 WWLNMLM 101 (104)
T ss_pred HHHHHHH
Confidence 9999986
No 23
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.92 E-value=0.023 Score=43.36 Aligned_cols=83 Identities=20% Similarity=0.349 Sum_probs=60.9
Q ss_pred ccccceeeEEeecceeEeeeeecCCCCC-CcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehhhH
Q 028920 87 VDDWLPRFIVLHGSCIFFYLLSTDLSPQ-DSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSW 165 (202)
Q Consensus 87 VDDWlpRFVVl~G~ciffyL~sTDLsPQ-dStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsW 165 (202)
+-.|=-|+.||+|.-|+||=...+-+|- +++.|+++..|-....-.+. -..++||=|.|..=- |.=...++-+-++|
T Consensus 16 ~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~-~~~~~~Fei~tp~rt-~~l~A~se~e~e~W 93 (101)
T cd01264 16 IKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRD-RSLPKAFEIFTADKT-YILKAKDEKNAEEW 93 (101)
T ss_pred eecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccc-cccCcEEEEEcCCce-EEEEeCCHHHHHHH
Confidence 4678899999999999999887777777 89999999876533211110 123599999987633 44445667788999
Q ss_pred HHHhhc
Q 028920 166 LSALQT 171 (202)
Q Consensus 166 L~al~~ 171 (202)
+++|+.
T Consensus 94 I~~i~~ 99 (101)
T cd01264 94 LQCLNI 99 (101)
T ss_pred HHHHHh
Confidence 999974
No 24
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.52 E-value=0.092 Score=40.67 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=67.9
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecCCC-------CCCcceeehhhhccCCCCcccCC
Q 028920 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLS-------PQDSTVLSDVVEVASLPSITREN 135 (202)
Q Consensus 63 SgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDLs-------PQdStllsDIVEVg~lP~f~rEd 135 (202)
.|||+-.-.|....-..|+ .-.-|-++|+||+|.-++||---..-. +..++-|.. .+-....+.
T Consensus 3 ~g~l~RK~~~~~~~kk~~~----~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~-----a~~~ia~dy 73 (117)
T cd01230 3 HGALMRKVHADPDCRKTPF----GKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHH-----ALATRASDY 73 (117)
T ss_pred CcEEEEEEEecCCCccCCC----CCCcceEEEEEEECCEEEEEccCcccccccccccccceEEecc-----ceeEeeccc
Confidence 4899988888766555431 235799999999999999986542111 112222222 111223344
Q ss_pred CceEEEEEEEeecceeeeecccceeehhhHHHHhhccccccC
Q 028920 136 GEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQTDCKLDY 177 (202)
Q Consensus 136 ge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~d~k~~~ 177 (202)
.+-.+-|.|.|.-|=-|-=+..+.-.+.+|+.+|+.=+-..|
T Consensus 74 ~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s 115 (117)
T cd01230 74 SKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAFS 115 (117)
T ss_pred cCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 566789999998765555555556678899999997665443
No 25
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=94.35 E-value=0.12 Score=38.76 Aligned_cols=100 Identities=15% Similarity=0.255 Sum_probs=58.1
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecCCCCC--------------CcceeehhhhccCC
Q 028920 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQ--------------DSTVLSDVVEVASL 128 (202)
Q Consensus 63 SgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDLsPQ--------------dStllsDIVEVg~l 128 (202)
.|||+-+.-|..--.-.| . ---.|-.-|+||+|..++||=-.....+. .++-|.. -.++.-
T Consensus 3 eG~l~RK~~~~~~gkk~~-~---~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~-a~a~~a 77 (119)
T PF15410_consen 3 EGILMRKHELESGGKKAS-R---SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHH-ALAEIA 77 (119)
T ss_dssp EEEEEEEEEEECTTCC-------S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT--EEEEE
T ss_pred eEEEEEEEEEcCCCCCcC-C---CCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecc-eEEEeC
Confidence 488888888876543332 2 23489999999999999999652211111 1111110 001112
Q ss_pred CCcccCCCceEEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 129 PSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 129 P~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
+.+ -+-.+.|.+.|..|-.|-=.-.+.-.+.+|+.+|+.
T Consensus 78 ~dY----~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 78 SDY----TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp TTB----TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred ccc----ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhh
Confidence 222 245679999999998877666777788999999973
No 26
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.30 E-value=0.14 Score=38.86 Aligned_cols=83 Identities=13% Similarity=0.332 Sum_probs=50.9
Q ss_pred ccccceeeEEeecceeEeeeeecCCCCCCcceeehhhh--ccCCCCcc-----cCCCceEEEEEEEee-cceeeeecccc
Q 028920 87 VDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVE--VASLPSIT-----RENGEMQYCFYILTR-HGLRIECSSIS 158 (202)
Q Consensus 87 VDDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVE--Vg~lP~f~-----rEdge~~yaFyIlTr-hGLR~ECSS~s 158 (202)
.+-|=+|+.||.+++|.||=--.|..|.|-+|+..-.. .|.-.... .+....+|.|-|.|. .=+.+.|.|
T Consensus 30 ~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s-- 107 (121)
T cd01254 30 CDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKS-- 107 (121)
T ss_pred ccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCC--
Confidence 45799999999999999987656666666666632221 11111000 011244677777643 235666654
Q ss_pred eeehhhHHHHhhc
Q 028920 159 KIQVYSWLSALQT 171 (202)
Q Consensus 159 kiQVdsWL~al~~ 171 (202)
+.|...|+.+|+.
T Consensus 108 ~~~~~~Wi~~i~~ 120 (121)
T cd01254 108 SRKLKQWMASIED 120 (121)
T ss_pred HHHHHHHHHHHHh
Confidence 5677889999873
No 27
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.40 E-value=0.22 Score=36.40 Aligned_cols=77 Identities=13% Similarity=0.261 Sum_probs=50.7
Q ss_pred cccceeeEEeecceeEeeeeecCCC-----CCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeeh
Q 028920 88 DDWLPRFIVLHGSCIFFYLLSTDLS-----PQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQV 162 (202)
Q Consensus 88 DDWlpRFVVl~G~ciffyL~sTDLs-----PQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQV 162 (202)
-.|=||+++|...-+.|+-.-...+ +.+.+-++++ .|.. ..+.+-.|+|.|.+.+ =.|+++-.|.-.-
T Consensus 16 ~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~-~v~~-----~~~~~~~~~F~I~~~~-rsf~l~A~s~eEk 88 (101)
T cd01219 16 EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGM-QVCE-----GDNLERPHSFLVSGKQ-RCLELQARTQKEK 88 (101)
T ss_pred CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccE-EEEe-----CCCCCcCceEEEecCC-cEEEEEcCCHHHH
Confidence 4688999999877555553222222 2233444442 1211 1134567899999888 7899988899999
Q ss_pred hhHHHHhhc
Q 028920 163 YSWLSALQT 171 (202)
Q Consensus 163 dsWL~al~~ 171 (202)
+.|+.||+.
T Consensus 89 ~~W~~ai~~ 97 (101)
T cd01219 89 NDWVQAIFS 97 (101)
T ss_pred HHHHHHHHH
Confidence 999999974
No 28
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.20 E-value=0.51 Score=36.93 Aligned_cols=94 Identities=16% Similarity=0.373 Sum_probs=55.3
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecc-eeEeeeeecCC--CCCCcceeehhhhccCCCCcccC--CCc
Q 028920 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS-CIFFYLLSTDL--SPQDSTVLSDVVEVASLPSITRE--NGE 137 (202)
Q Consensus 63 SgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~-ciffyL~sTDL--sPQdStllsDIVEVg~lP~f~rE--dge 137 (202)
-||||+|+... + ---|.-.|+..++. =+|=++...-- .++. ....+--.+|-+-+-.++ ..+
T Consensus 2 ~GYLy~~~k~~--------~----~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~-g~v~~~e~~~l~sc~~r~~~~~d 68 (104)
T cd01249 2 EGYLYMQEKSK--------F----GGSWTKYYCTYSKETRIFTMVPFNQKTKTDMK-GAVAQDETLTLKSCSRRKTESID 68 (104)
T ss_pred CceEEEEcCCC--------C----CCeEEEEEEEEEcCCcEEEEEecccccccccC-cccccceEEeeeeccccccCCcc
Confidence 49999999543 1 12498778888874 34422221111 1122 233344445555555553 338
Q ss_pred eEEEEEEE--eecc-eeeeecccceeehhhHHHHhhc
Q 028920 138 MQYCFYIL--TRHG-LRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 138 ~~yaFyIl--TrhG-LR~ECSS~skiQVdsWL~al~~ 171 (202)
-||||=|. +++| +-+.. .|+-+-..|+.|+.+
T Consensus 69 RRFCFei~~~~~~~~~~lQA--~Se~~~~~Wi~A~dg 103 (104)
T cd01249 69 KRFCFDVEVEEKPGVITMQA--LSEKDRRLWIEAMDG 103 (104)
T ss_pred ceeeEeeeecCCCCeEEEEe--cCHHHHHHHHHhhcC
Confidence 89999995 4443 33444 677778889999865
No 29
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.86 E-value=1.1 Score=34.96 Aligned_cols=77 Identities=27% Similarity=0.413 Sum_probs=46.8
Q ss_pred ccccceeeEEeecceeEeeeeecCCCCCC---------cceeeh----hhhccCCCCcccCCCceEEEEEEEeecc-eee
Q 028920 87 VDDWLPRFIVLHGSCIFFYLLSTDLSPQD---------STVLSD----VVEVASLPSITRENGEMQYCFYILTRHG-LRI 152 (202)
Q Consensus 87 VDDWlpRFVVl~G~ciffyL~sTDLsPQd---------StllsD----IVEVg~lP~f~rEdge~~yaFyIlTrhG-LR~ 152 (202)
-..|-|||++|.|..+++|- --|+. +-=|.| +|..|+ .-.-+ +.--|+|-|.|-|| ...
T Consensus 16 ~~~wrP~F~aL~~~dl~ly~----s~P~s~e~w~~p~~~y~L~~~atrvv~~~~--~~~~~-~~~~~~F~irtg~~vesh 88 (108)
T cd01258 16 SQRWRPRFLALKGSEFLFFE----TPPLSVEDWSRPLYVYKLYDVATRLVKNSS--TRRLN-DQRDNCFLIRTGTQVENH 88 (108)
T ss_pred ccccceEEEEEcCCcEEEEe----CCCCCHHHHhChhhhChhHHhhhheeccCC--ccCcC-CCCceEEEEEcCCceeeE
Confidence 47899999999999999983 33442 221221 233333 22112 23348999999999 333
Q ss_pred eecccceeehhhHHHHhh
Q 028920 153 ECSSISKIQVYSWLSALQ 170 (202)
Q Consensus 153 ECSS~skiQVdsWL~al~ 170 (202)
-=|.-..-..-.|-+||+
T Consensus 89 ~fsVEt~~dL~~W~raiv 106 (108)
T cd01258 89 YLRVETHRDLASWERALV 106 (108)
T ss_pred EEEecCHHHHHHHHHHHh
Confidence 333334456667888775
No 30
>PRK09039 hypothetical protein; Validated
Probab=89.38 E-value=0.18 Score=44.83 Aligned_cols=99 Identities=23% Similarity=0.432 Sum_probs=66.0
Q ss_pred CCcccchhhHHHHHHHHhh-------hcChHHHHHHHHHhhhhHHHHHhhh------hcceeEEEeeec----ccCCCCC
Q 028920 17 DGQEKVELTATELESLRSE-------LADLEDREAHLKAQLEHVDEILRSA------RLSGYLYIRTRW----KPLPGEP 79 (202)
Q Consensus 17 ~~qekvelt~~EvesLRsE-------la~~eEREa~lkAqLehvDEvLRsa------rlSgYLyiRtRW----~aLpgEp 79 (202)
+.+-+|.+..+|++.||.. |+.+|+|.+..++|++.+-.-|+.| .|+.| |+.. .++-|.+
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~---~~~~~~~l~~~~~~~ 210 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRY---RSEFFGRLREILGDR 210 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHhCCC
Confidence 4455677777777777654 5566788888888888777666655 35554 2322 2344445
Q ss_pred CCCCCCCccccceeeEEeecceeEeeeeecCCCCCCcceeehhhhc
Q 028920 80 PPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEV 125 (202)
Q Consensus 80 ppiDDtdVDDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEV 125 (202)
|.|.-. +| |||+ ++ =++|-.-+++|+|+....|..|.++
T Consensus 211 ~~iri~--g~---~~~~-~~-~vlF~~gsa~L~~~~~~~L~~ia~~ 249 (343)
T PRK09039 211 EGIRIV--GD---RFVF-QS-EVLFPTGSAELNPEGQAEIAKLAAA 249 (343)
T ss_pred CCcEEE--CC---EEEe-cC-CceeCCCCcccCHHHHHHHHHHHHH
Confidence 444332 22 7754 44 4889999999999999999888764
No 31
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=88.38 E-value=0.54 Score=46.77 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=85.8
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHhhhhHHH----------------HHhhhhcceeEEEeeecccCCCCCCCCCCCCcc
Q 028920 25 TATELESLRSELADLEDREAHLKAQLEHVDE----------------ILRSARLSGYLYIRTRWKPLPGEPPPIDDTDVD 88 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAqLehvDE----------------vLRsarlSgYLyiRtRW~aLpgEpppiDDtdVD 88 (202)
-++.+..+|.|.+...++..+....+.+..+ ....-+..||||.|+-= ---
T Consensus 223 i~~~v~ql~~~~~~e~~am~~~~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~~-------------~~~ 289 (785)
T KOG0521|consen 223 VATYVQQLREESDAEQRAMEQRYQELRSASNLESRPKSDSASPSGGNLKLGYRMEGYLRKKASN-------------ASK 289 (785)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHHHHHHHhhhhhhccccccccccccccchhhhhhhhhhhccc-------------chh
Confidence 4678899999888877777777777776533 23445677889988641 112
Q ss_pred ccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCC---ceEEEEEEEeecceeeeecccceeehhh-
Q 028920 89 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENG---EMQYCFYILTRHGLRIECSSISKIQVYS- 164 (202)
Q Consensus 89 DWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdg---e~~yaFyIlTrhGLR~ECSS~skiQVds- 164 (202)
-|=+|+--++|.++-|+.+..+..+ .+.....++-.+-+. +-||||-|+| | +.++..|-+|
T Consensus 290 tw~r~~f~~q~~~l~~~~r~~~~~~--------~~~~dL~~csvk~~~~~~drr~CF~iiS-~------tks~~lQAes~ 354 (785)
T KOG0521|consen 290 TWKRRWFSIQDGQLGYQHRGADAEN--------VLIEDLRTCSVKPDAEQRDRRFCFEIIS-P------TKSYLLQAESE 354 (785)
T ss_pred hHHhhhhhhhccccccccccccccc--------cccccchhccccCCcccccceeeEEEec-C------CcceEEecCch
Confidence 3555999999999999999999988 555555566555433 4799999999 3 4566677766
Q ss_pred -----HHHHhhc
Q 028920 165 -----WLSALQT 171 (202)
Q Consensus 165 -----WL~al~~ 171 (202)
|.++|+.
T Consensus 355 ~d~~~Wi~~i~n 366 (785)
T KOG0521|consen 355 KDCQDWISALQN 366 (785)
T ss_pred hHHHHHHHHHHH
Confidence 9999884
No 32
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=86.71 E-value=2.2 Score=31.93 Aligned_cols=93 Identities=22% Similarity=0.445 Sum_probs=46.4
Q ss_pred ceeEEEeeecccCCCCCCCCCCCCccccceeeEEee-cceeEeeee-------------ecCCCCCCcceeehhhhccCC
Q 028920 63 SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLH-GSCIFFYLL-------------STDLSPQDSTVLSDVVEVASL 128 (202)
Q Consensus 63 SgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~-G~ciffyL~-------------sTDLsPQdStllsDIVEVg~l 128 (202)
+|||| .|..-=|. -|=+||.||+ +-.+-||=- +.+..+.++.-. .+++..+
T Consensus 2 ~G~l~---K~~~~~~k----------gWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 66 (112)
T PF15413_consen 2 EGYLY---KWGNKFGK----------GWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSI--SRRSSRI 66 (112)
T ss_dssp EEEEE---E--TTS-S------------EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE-----GGGT-
T ss_pred CceEE---EecCCCCc----------CccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCc--ccccccc
Confidence 58888 44443344 4999999999 888888876 455555444332 1222222
Q ss_pred CCc---ccCCCceEEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 129 PSI---TRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 129 P~f---~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
-+. .+...-..-.|+|-|-.+ +|-|-.-+.-....|+.||+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~T~~k-t~~l~~~t~~d~~~Wi~aL~~ 111 (112)
T PF15413_consen 67 QGIKDKNPFGEIHLKVFSIFTPTK-TFHLRCETREDRYDWIEALQE 111 (112)
T ss_dssp EEEES-T--SS-SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH
T ss_pred cccccCCcccCcCCCCcEEECCCc-EEEEEECCHHHHHHHHHHHHh
Confidence 110 111112224677765544 444444555566789999874
No 33
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.80 E-value=2.1 Score=34.41 Aligned_cols=95 Identities=18% Similarity=0.433 Sum_probs=64.2
Q ss_pred cceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCC--Ccc-cCCCce
Q 028920 62 LSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLP--SIT-RENGEM 138 (202)
Q Consensus 62 lSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP--~f~-rEdge~ 138 (202)
+.|+||+|. +|- .-|=.+|+||+++=|||.=.++-=+|-|=+.+.+.-+...-- ++. ....-|
T Consensus 2 ~~g~LylK~-----~gk---------KsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPT 67 (114)
T cd01259 2 MEGPLYLKA-----DGK---------KSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPT 67 (114)
T ss_pred ccceEEEcc-----CCC---------ccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCC
Confidence 579999984 232 369999999999999999998887777777777765553111 111 122345
Q ss_pred EEEEEEE-------eecceeeeecccceeehhhHHHHhhc
Q 028920 139 QYCFYIL-------TRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 139 ~yaFyIl-------TrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
-|+|-+= ..+.|++-|.-- +-+..+|++|||.
T Consensus 68 d~~F~~K~~~~q~~~s~~ik~lCaeD-e~t~~~W~ta~Ri 106 (114)
T cd01259 68 DYCFGFKAVGDQSKGSQSIKYLCAED-LPTLDRWLTAIRI 106 (114)
T ss_pred CceEEEeccccCcccchhheeeccCC-HHHHHHHHHHHHH
Confidence 5666551 246677777643 4567899999983
No 34
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=78.56 E-value=3.3 Score=27.86 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=35.3
Q ss_pred chhhHHHHHHHHhhhcChHHHHHHHHHhhhhH----HHHHhhhh-cceeE
Q 028920 22 VELTATELESLRSELADLEDREAHLKAQLEHV----DEILRSAR-LSGYL 66 (202)
Q Consensus 22 velt~~EvesLRsEla~~eEREa~lkAqLehv----DEvLRsar-lSgYL 66 (202)
+.-...|++.|..+++.+.++-..|+++++.+ |.|-+.|| --||.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~ 68 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMV 68 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCc
Confidence 34456788889999999999888888888776 66778888 66664
No 35
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=76.43 E-value=3.8 Score=32.58 Aligned_cols=45 Identities=31% Similarity=0.609 Sum_probs=34.1
Q ss_pred hccCCCC-cccCCCceEEEEEEEeecce-eeeecccceeehhhHHHHhh
Q 028920 124 EVASLPS-ITRENGEMQYCFYILTRHGL-RIECSSISKIQVYSWLSALQ 170 (202)
Q Consensus 124 EVg~lP~-f~rEdge~~yaFyIlTrhGL-R~ECSS~skiQVdsWL~al~ 170 (202)
|+-.-|. ...|+|+.+|.|=+.|.+|+ .|||-|.. +-+.|...|+
T Consensus 54 ~~~awpgr~~~e~~~~~~yfgL~T~~G~vEfec~~~~--~~k~W~~gI~ 100 (110)
T PF08458_consen 54 EIPAWPGRELREDGEERRYFGLKTAQGVVEFECDSQR--EYKRWVQGIQ 100 (110)
T ss_pred CcccCCCcccccCCceEEEEEEEecCcEEEEEeCChh--hHHHHHHHHH
Confidence 3434453 45688889999999999996 79998764 4667998876
No 36
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=68.97 E-value=2.7 Score=30.75 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=23.7
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
+.|||-||..|+++++|-++|+.+ .++||+
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~E----N~~Lk~ 42 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEE----NNLLKQ 42 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 469999999999999998776543 456664
No 37
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.94 E-value=17 Score=28.59 Aligned_cols=80 Identities=14% Similarity=0.229 Sum_probs=49.9
Q ss_pred cccceeeEEeecceeEeeeeecCCCCCCcceeehh-hhccCCCCcccCCCceEEEEEEEe--eccee-eeecccceeehh
Q 028920 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDV-VEVASLPSITRENGEMQYCFYILT--RHGLR-IECSSISKIQVY 163 (202)
Q Consensus 88 DDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDI-VEVg~lP~f~rEdge~~yaFyIlT--rhGLR-~ECSS~skiQVd 163 (202)
..|=-||+++.|.-||||=.-.|..|..++-+... .||-+=.|. .+-.|+|-+++ -.|-| |.=+--++-|-+
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~----~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya 93 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNV----AQQKFHIKLLIPTAEGMNEVWLRCDNEKQYA 93 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccc----cccceEEEEecCCccCCeEEEEECCCHHHHH
Confidence 34778999999999999966666666666444321 222111111 12347777775 44544 333344688999
Q ss_pred hHHHHhhc
Q 028920 164 SWLSALQT 171 (202)
Q Consensus 164 sWL~al~~ 171 (202)
+|+.|++.
T Consensus 94 ~Wmaa~rl 101 (106)
T cd01237 94 KWMAACRL 101 (106)
T ss_pred HHHHHHHH
Confidence 99999874
No 38
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=68.62 E-value=50 Score=25.14 Aligned_cols=106 Identities=22% Similarity=0.277 Sum_probs=69.6
Q ss_pred HHHHHhhhhcceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecCC-------CCCCcceeehhhhc
Q 028920 53 VDEILRSARLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDL-------SPQDSTVLSDVVEV 125 (202)
Q Consensus 53 vDEvLRsarlSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDL-------sPQdStllsDIVEV 125 (202)
|.+.+....--.|||--+|=. -++ + -...-.||+-|+..+-..|-.+.+= +-..++-+.+|.+|
T Consensus 2 v~~ai~~~~~G~~l~Ky~r~~-~~~----~----~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V 72 (123)
T PF12814_consen 2 VIQAITQLMIGEWLYKYTRKG-RSG----I----SEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEV 72 (123)
T ss_pred HHHHHHHhhcccEEEEEcccc-cCc----c----CCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEe
Confidence 345566777788888766654 111 0 2345789999999877777666441 11245778888877
Q ss_pred c---CCCCcccCCCceEEEEEEEee-cceeeeecccceeehhhHHHHhh
Q 028920 126 A---SLPSITRENGEMQYCFYILTR-HGLRIECSSISKIQVYSWLSALQ 170 (202)
Q Consensus 126 g---~lP~f~rEdge~~yaFyIlTr-hGLR~ECSS~skiQVdsWL~al~ 170 (202)
- +.|.+.... +..|+|-|.|. -=|++.|.+.. .-+-|+++|+
T Consensus 73 ~~~~~~~~~~~~~-~~~~si~i~t~~R~L~l~a~s~~--~~~~W~~aL~ 118 (123)
T PF12814_consen 73 KDGNPSPPGLKKP-DHNKSIIIVTPDRSLDLTAPSRE--RHEIWFNALR 118 (123)
T ss_pred cCCCCCCcccccc-ccceEEEEEcCCeEEEEEeCCHH--HHHHHHHHHH
Confidence 4 445554222 27788887764 36899998755 4678999986
No 39
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=68.11 E-value=6.2 Score=30.14 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=29.7
Q ss_pred HHhhhcChHHHHHHHHHhhhhHHHHHhhhhcce
Q 028920 32 LRSELADLEDREAHLKAQLEHVDEILRSARLSG 64 (202)
Q Consensus 32 LRsEla~~eEREa~lkAqLehvDEvLRsarlSg 64 (202)
.-.||..+||+-++.+-+||.||-=||+..||.
T Consensus 3 V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~ 35 (85)
T PF15188_consen 3 VAKEIDGLEEKLAQCRRRLEAVESRLRRRELSP 35 (85)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHcccCCCh
Confidence 457899999999999999999999999988874
No 40
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=66.75 E-value=16 Score=29.61 Aligned_cols=65 Identities=15% Similarity=0.081 Sum_probs=52.8
Q ss_pred ccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeee
Q 028920 89 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIEC 154 (202)
Q Consensus 89 DWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~EC 154 (202)
-|--+|-+|..-||-+|.--++=.|--.+=|+||.-|-+-.+....++..-|+|=|.|. -+-|-+
T Consensus 15 ~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~-~~vY~V 79 (117)
T cd01239 15 RRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTT-TNVYFV 79 (117)
T ss_pred ceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEec-CEEEEe
Confidence 46678999999999999998888888899999999986544455567889999999994 345544
No 41
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=65.73 E-value=5.6 Score=32.62 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=21.0
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHh
Q 028920 25 TATELESLRSELADLEDREAHLKAQ 49 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAq 49 (202)
-+.|||-||..|.+++||-++|.+.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999998776553
No 42
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.87 E-value=16 Score=34.42 Aligned_cols=83 Identities=20% Similarity=0.498 Sum_probs=55.3
Q ss_pred CccccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCCceEEEE--EEEeecce-------------
Q 028920 86 DVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCF--YILTRHGL------------- 150 (202)
Q Consensus 86 dVDDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaF--yIlTrhGL------------- 150 (202)
-|.-|--||.||.--|+|||=..||--|-+-+-|..+- --+-||-.--++| |+.++.|-
T Consensus 273 rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNls------ir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRv 346 (395)
T KOG0930|consen 273 RVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLS------IREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRV 346 (395)
T ss_pred cccchhheeEEeecceeeeeeeccCCCCCcceeccccc------eeeccCCCCCCeEEEecCCCCcCeeeeecccCCcee
Confidence 57889999999999999999999999999988776530 0111222233343 44544332
Q ss_pred ------eeeecccceeehhhHHHHhhcccc
Q 028920 151 ------RIECSSISKIQVYSWLSALQTDCK 174 (202)
Q Consensus 151 ------R~ECSS~skiQVdsWL~al~~d~k 174 (202)
-|--|-.+.-.-|+|+.+|++-..
T Consensus 347 VEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 347 VEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred EeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 233455555667899988886543
No 43
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=63.67 E-value=7.5 Score=31.70 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHhhhcChH---------HHHHHHHHhhhhHHHHHhhhhc
Q 028920 22 VELTATELESLRSELADLE---------DREAHLKAQLEHVDEILRSARL 62 (202)
Q Consensus 22 velt~~EvesLRsEla~~e---------EREa~lkAqLehvDEvLRsarl 62 (202)
.+...+|++.|+.+|+.|. ++.+.+.+++..+.+.|..|++
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~~~L~~A~I 85 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLAARRRTAQL 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHccCEE
Confidence 3445667777777766662 4556677888888888988876
No 44
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=63.11 E-value=8.4 Score=27.85 Aligned_cols=33 Identities=36% Similarity=0.474 Sum_probs=16.1
Q ss_pred cccchhhHHHHHHHHhhhcChHHHHHHHHHhhh
Q 028920 19 QEKVELTATELESLRSELADLEDREAHLKAQLE 51 (202)
Q Consensus 19 qekvelt~~EvesLRsEla~~eEREa~lkAqLe 51 (202)
.+++.-..++++.|+.+++.++.+.+-+++|++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555544
No 45
>PHA03230 nuclear protein UL55; Provisional
Probab=60.35 E-value=11 Score=32.47 Aligned_cols=81 Identities=23% Similarity=0.392 Sum_probs=60.4
Q ss_pred eeeEEeecce-------eEeeeeecCCCCCCcceeehhhhccCCCCcccCCCc---------------eEE-----EEEE
Q 028920 92 PRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGE---------------MQY-----CFYI 144 (202)
Q Consensus 92 pRFVVl~G~c-------iffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdge---------------~~y-----aFyI 144 (202)
.|--+|+-.| .|||=+.+|=+|..+.++.|+--.+.|=|..|--.| |.+ ..+-
T Consensus 52 ~RsY~iRa~C~~~~~lHaFF~gl~~~~~~~~~p~~~dl~~f~~lln~~~~l~el~~~~~lC~aPFSaaTi~d~~~~~~~~ 131 (180)
T PHA03230 52 TRTYTIRATCNTSGDLHAFFFGLFTDSKPSEQPSLPDLRNFCRLLNNPRVLRELRTKHELCSAPFSAATIKDSLDDGYLE 131 (180)
T ss_pred ceeEEEEeecCCCCceeEEEEEEeecCCcccCCCHHHHHHHHHHHcCHHHHHHhcccCCCCCCCcchheeeccCCCCcce
Confidence 6888999888 799999999999988998887655555443331111 111 1226
Q ss_pred EeecceeeeecccceeehhhHHHHhhcc
Q 028920 145 LTRHGLRIECSSISKIQVYSWLSALQTD 172 (202)
Q Consensus 145 lTrhGLR~ECSS~skiQVdsWL~al~~d 172 (202)
+|=+||.|-|==.++|-+++|..|--+=
T Consensus 132 ~~I~Gl~yHCHCk~PFS~eCW~gA~aA~ 159 (180)
T PHA03230 132 YTINGLCYHCHCKNPFSLECWQGAFAAS 159 (180)
T ss_pred eEEeEEEEeeccCCCCCHHHHHHHHHHH
Confidence 7889999999999999999999886543
No 46
>PF04537 Herpes_UL55: Herpesvirus UL55 protein; InterPro: IPR007622 In infected cells, UL55 is associated with the nuclear matrix, and found adjacent to compartments containing the capsid protein ICP35. UL55 was not detected in assembled virions. It is thought that UL55 may play a role in virion assembly or maturation [].; GO: 0019067 viral assembly, maturation, egress, and release
Probab=60.03 E-value=17 Score=31.07 Aligned_cols=74 Identities=28% Similarity=0.455 Sum_probs=56.8
Q ss_pred eeeEEeecce-------eEeeeeecCCCCCCcceeehhhhccCCCCcc---c------------------------CCCc
Q 028920 92 PRFIVLHGSC-------IFFYLLSTDLSPQDSTVLSDVVEVASLPSIT---R------------------------ENGE 137 (202)
Q Consensus 92 pRFVVl~G~c-------iffyL~sTDLsPQdStllsDIVEVg~lP~f~---r------------------------Edge 137 (202)
.|--+|+-.| .|||=+.+|=+|.-|.++.|+-=.-+|=|.. + ++|+
T Consensus 46 ~Rsy~lRa~C~~~~~~HaFF~gl~~~~~~~~~p~~~dl~~f~~llN~~~~l~el~~~~~~~~C~~PFSaaTi~d~~~~~~ 125 (169)
T PF04537_consen 46 TRSYVLRATCNTSGDLHAFFFGLFKDSKESMSPLLSDLRNFCRLLNNPPVLRELRDKHGRPLCSAPFSAATIKDSPDDGY 125 (169)
T ss_pred eeeEEEEeecCCCCceeEEEEEEEecCCCccCcchHhHHHHHHHHcChHHHHHHhhcccccccCCCcccceeeccCCCCC
Confidence 6888999888 6999999999999998887764333332221 1 3333
Q ss_pred eEEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 138 MQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 138 ~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
-+|=+||.|-|==.++|-+++|..|--+
T Consensus 126 ------~~~I~Gl~yHCHCk~PFS~eCW~gA~aA 153 (169)
T PF04537_consen 126 ------EYTINGLCYHCHCKNPFSLECWRGAFAA 153 (169)
T ss_pred ------ceEEEEEEEEeecCCCCCHHHHHHHHHH
Confidence 5678999999999999999999988654
No 47
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=58.80 E-value=17 Score=30.44 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhhcChHHHHH---HHHHhhhhHHHHHhhhhccee
Q 028920 25 TATELESLRSELADLEDREA---HLKAQLEHVDEILRSARLSGY 65 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa---~lkAqLehvDEvLRsarlSgY 65 (202)
..+|-+.|+.|++.++.+.+ .++++.+++.++|....-..|
T Consensus 74 l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~~~~~ 117 (276)
T PRK13922 74 LREENEELKKELLELESRLQELEQLEAENARLRELLNLKESLDY 117 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 45677777777777777666 567777788888776654443
No 48
>PF12852 Cupin_6: Cupin
Probab=57.37 E-value=20 Score=27.77 Aligned_cols=43 Identities=37% Similarity=0.764 Sum_probs=31.4
Q ss_pred hHHHHHhhhhcceeEEEeee----ccc-CCCCCCCCCCCCccccceeeEEeecceeEe
Q 028920 52 HVDEILRSARLSGYLYIRTR----WKP-LPGEPPPIDDTDVDDWLPRFIVLHGSCIFF 104 (202)
Q Consensus 52 hvDEvLRsarlSgYLyiRtR----W~a-LpgEpppiDDtdVDDWlpRFVVl~G~ciff 104 (202)
-++++|+..|+.|.+|.|.. |.- .|+.+ . ..=.+|++|+|.+.
T Consensus 2 ~Ls~lL~~l~l~~~~~~~~~~~~~W~~~~~~~~---------~-~~fh~V~~G~~~l~ 49 (186)
T PF12852_consen 2 PLSDLLSSLRLRGSLFFRCELCGPWGLRFPGSP---------G-ASFHVVLRGSCWLR 49 (186)
T ss_pred chHHHHhhCCCceEEEEEEEEeCCcEEeccCCC---------c-eEEEEEECCeEEEE
Confidence 47899999999999999875 432 22221 1 55678999999765
No 49
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=55.01 E-value=17 Score=33.33 Aligned_cols=34 Identities=35% Similarity=0.462 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
.+|-|+|-+|+.++|.|-..||.|++++-.=+|+
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998755554
No 50
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=54.92 E-value=17 Score=33.94 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=33.0
Q ss_pred cchhhHHHHHHHHhhhcChHHHHHH-HHHhhhhHHHHHhhh
Q 028920 21 KVELTATELESLRSELADLEDREAH-LKAQLEHVDEILRSA 60 (202)
Q Consensus 21 kvelt~~EvesLRsEla~~eEREa~-lkAqLehvDEvLRsa 60 (202)
-+||-..|+..|+.|||++|||-+. .-.+...|.|++.+.
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~ 310 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESC 310 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4577889999999999999999875 456777888888764
No 51
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=54.56 E-value=28 Score=30.87 Aligned_cols=82 Identities=17% Similarity=0.365 Sum_probs=54.5
Q ss_pred ccceeeEEeecceeEeeee---ec-CCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehhh
Q 028920 89 DWLPRFIVLHGSCIFFYLL---ST-DLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYS 164 (202)
Q Consensus 89 DWlpRFVVl~G~ciffyL~---sT-DLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVds 164 (202)
.|-.||..+.+.=+...+. .. +-+|.-+. +.++-+|=++|.+.-..+ .++|-|-|+.|=|+-=-+.++...|.
T Consensus 391 ~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~-l~~~~~v~pv~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 467 (478)
T PTZ00267 391 RWKKRYFYIGNGQLRISLSENPENDGVAPKSVN-LETVNDVFPVPEVYSQKH--PNQLVLWFNNGQKIIAYAKTAEDRDQ 467 (478)
T ss_pred chhhheEEecCCceEEEeccccccCCCCCcccc-HHHhcccccccHHhcCCC--CceEEEEecCCcEEEEecCChHHHHH
Confidence 4888988887555544433 11 22333333 556767766665433322 56788888889888777788899999
Q ss_pred HHHHhhccc
Q 028920 165 WLSALQTDC 173 (202)
Q Consensus 165 WL~al~~d~ 173 (202)
|+++|+.=|
T Consensus 468 W~~~~~~~~ 476 (478)
T PTZ00267 468 WISKFQRAC 476 (478)
T ss_pred HHHHHHHHh
Confidence 999998654
No 52
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.32 E-value=14 Score=28.10 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=25.6
Q ss_pred cchhhHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 21 KVELTATELESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 21 kvelt~~EvesLRsEla~~eEREa~lkAqLehv 53 (202)
+..-..+|++.++.|++.++.|.+.|+++++.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556788888888888888888888887665
No 53
>PRK04406 hypothetical protein; Provisional
Probab=51.56 E-value=34 Score=25.04 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcce
Q 028920 29 LESLRSELADLEDREAHLKAQLEHVDEILRSARLSG 64 (202)
Q Consensus 29 vesLRsEla~~eEREa~lkAqLehvDEvLRsarlSg 64 (202)
+++|-..++.-...-..|++||.++-+-|+++.-++
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~~ 62 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSSN 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444444444444444566777777777777765444
No 54
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=50.96 E-value=19 Score=28.45 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=38.2
Q ss_pred hhhhccCCCCcccCC--CceEEEEEEEeec-ceeeeecccceeehhhHHHHhhc
Q 028920 121 DVVEVASLPSITREN--GEMQYCFYILTRH-GLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 121 DIVEVg~lP~f~rEd--ge~~yaFyIlTrh-GLR~ECSS~skiQVdsWL~al~~ 171 (202)
|-+||..+|.=...+ ...++||+|...+ +--|.++-.+.-+=.+||.|+..
T Consensus 52 ~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 52 DRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred ccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence 445666666554442 2468899999888 66788888888999999999864
No 55
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=49.74 E-value=27 Score=26.90 Aligned_cols=39 Identities=36% Similarity=0.529 Sum_probs=30.5
Q ss_pred cchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 21 kvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
.++-...+++.+..|++.+++++.++++++.+....++.
T Consensus 74 ~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 74 DVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888999999999999998887766654
No 56
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=49.69 E-value=21 Score=25.92 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=26.0
Q ss_pred ccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 20 EKVELTATELESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 20 ekvelt~~EvesLRsEla~~eEREa~lkAqLehv 53 (202)
+.++-..+|+..+..+|+.+|+....+.+++.++
T Consensus 67 ~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 67 EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888887777653
No 57
>PLN02866 phospholipase D
Probab=49.50 E-value=24 Score=37.20 Aligned_cols=77 Identities=21% Similarity=0.451 Sum_probs=49.0
Q ss_pred cccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCccc-------------CCCceEEEEEEEee-cceeee
Q 028920 88 DDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITR-------------ENGEMQYCFYILTR-HGLRIE 153 (202)
Q Consensus 88 DDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~r-------------Edge~~yaFyIlTr-hGLR~E 153 (202)
+.|--||.||.-+|+.|.- .|-+. -+.||+-+..+|.... |...++|.|.|.+. .-|.+.
T Consensus 216 ~~w~k~w~v~k~~~l~~~~-----~p~~~-~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~ 289 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLE-----DPFDA-KPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCGNRSIRLR 289 (1068)
T ss_pred CchheeEEEEeccEEEEEe-----cCCCC-ceeEEEEEecccccccCCCcceeecccccccCCCcceEEEecCceEEEEE
Confidence 5799999999999998742 23333 3677877777773222 22234555555421 125555
Q ss_pred ecccceeehhhHHHHhhcc
Q 028920 154 CSSISKIQVYSWLSALQTD 172 (202)
Q Consensus 154 CSS~skiQVdsWL~al~~d 172 (202)
|.| ..++.-|+.+|+.=
T Consensus 290 ~~s--~~~~~~w~~ai~~~ 306 (1068)
T PLN02866 290 TKS--SAKVKDWVAAINDA 306 (1068)
T ss_pred ECC--HHHHHHHHHHHHHH
Confidence 554 56788999999854
No 58
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=49.08 E-value=25 Score=26.61 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehv 53 (202)
.++++.|+..++..+.|-..+..+++|+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444444444444444444444443
No 59
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=47.22 E-value=14 Score=28.78 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=32.4
Q ss_pred hhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 123 VEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 123 VEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
++|..+|.- ++..++|+|.++.+-.|+..-.+.-+=..|+.++..
T Consensus 63 ~~V~d~~d~----~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~ 107 (112)
T cd01261 63 VDINDKPDS----SEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALIS 107 (112)
T ss_pred eEEEEcCCC----cccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 666655542 246899999998655577666777778899999863
No 60
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=46.78 E-value=30 Score=28.31 Aligned_cols=35 Identities=37% Similarity=0.573 Sum_probs=28.9
Q ss_pred hhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 028920 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (202)
Q Consensus 24 lt~~EvesLRsEla~~eEREa~lkAqLehvDEvLR 58 (202)
++..|++..+.+++.+.++|+.|..+++..-+-++
T Consensus 64 v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~ 98 (152)
T PF07321_consen 64 VSLKELEKWQQQVASLREREAELEQQLAEAEEQLE 98 (152)
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999888776554443
No 61
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.35 E-value=28 Score=31.91 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=35.4
Q ss_pred CCcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 028920 17 DGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (202)
Q Consensus 17 ~~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLR 58 (202)
...+++.-..++++.|+.|++.++.+.+.+++|+..++.+-.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 109 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIRE 109 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455677777889999999999999999999999988888753
No 62
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=44.27 E-value=7 Score=31.57 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=49.4
Q ss_pred cchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEEEeeecccCCCCCCCCCCCCccccceeeEEeec
Q 028920 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG 99 (202)
Q Consensus 21 kvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarlSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G 99 (202)
-||||++|...|..=+..+.+--+.++.|| +-.-+++.=+-.--=|..+.|.| +.|=.|||..+|
T Consensus 28 AiELT~~E~~~f~~Ll~~L~~q~~~i~~eL------M~EE~I~lE~E~~~~W~eleG~~--------~~~sLr~IL~~~ 92 (117)
T PF08848_consen 28 AIELTEAEFNDFCRLLQQLAEQMQAIADEL------MDEESITLEAESDLWWMELEGYP--------HAWSLRLILNQG 92 (117)
T ss_dssp EEEE-HHHHHHHHHHHHHHHHHHHCCHTTS------STTSEEEEEEEETTEEEEEEEET--------TEEEEEEEE-TC
T ss_pred heeecHHHHHHHHHHHHHHHHHHHHHHHHh------cchhhheeeeccccEEEEecccc--------CceEEEEEEcCC
Confidence 589999999999999988888777777766 33345555555555688898888 789999998887
No 63
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=44.25 E-value=37 Score=26.70 Aligned_cols=25 Identities=8% Similarity=0.359 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhcc
Q 028920 39 LEDREAHLKAQLEHVDEILRSARLS 63 (202)
Q Consensus 39 ~eEREa~lkAqLehvDEvLRsarlS 63 (202)
+.++.+.+.+++..+.+.|.+|++-
T Consensus 47 ak~~~~~~e~ri~~L~~~L~~a~iv 71 (151)
T TIGR01462 47 AKEEQGFNEGRIAELEDLLANAQVI 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3567788889999999999999863
No 64
>PF15408 PH_7: Pleckstrin homology domain
Probab=43.79 E-value=18 Score=28.99 Aligned_cols=77 Identities=22% Similarity=0.352 Sum_probs=52.1
Q ss_pred eeeEEeecceeEeeeeecCCCCC--CcceeehhhhccCCCCcccCC---CceEEEEEEEeecceeeeecccceeehhhHH
Q 028920 92 PRFIVLHGSCIFFYLLSTDLSPQ--DSTVLSDVVEVASLPSITREN---GEMQYCFYILTRHGLRIECSSISKIQVYSWL 166 (202)
Q Consensus 92 pRFVVl~G~ciffyL~sTDLsPQ--dStllsDIVEVg~lP~f~rEd---ge~~yaFyIlTrhGLR~ECSS~skiQVdsWL 166 (202)
-|||||.|--+-||- |-.-| ||.-|+--|=.-+|-+|+.-- |-.-|-|-+..--|=|..|--.|+--..+|+
T Consensus 14 rRF~~L~~K~~~~~~---~KGG~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~~~~FA~S~~~~~~Wi 90 (104)
T PF15408_consen 14 RRFVMLRSKQFNMYE---DKGGQYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRHVQCFASSKKVCQSWI 90 (104)
T ss_pred HHHHhhhhceeEEec---ccCCceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcchhhhhhhHHHHHHHHH
Confidence 589999998877752 22222 222233333334555665522 4556677777888999999999999999999
Q ss_pred HHhhc
Q 028920 167 SALQT 171 (202)
Q Consensus 167 ~al~~ 171 (202)
.|++.
T Consensus 91 ~~mN~ 95 (104)
T PF15408_consen 91 QVMNS 95 (104)
T ss_pred HHhcC
Confidence 99985
No 65
>PF15456 Uds1: Up-regulated During Septation
Probab=43.71 E-value=33 Score=27.24 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhh
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLE 51 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLe 51 (202)
-|+..||++|..|+..++.|-..+++.|.
T Consensus 18 iLs~eEVe~LKkEl~~L~~R~~~lr~kl~ 46 (124)
T PF15456_consen 18 ILSFEEVEELKKELRSLDSRLEYLRRKLA 46 (124)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998887
No 66
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=43.62 E-value=30 Score=30.33 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=17.2
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 028920 27 TELESLRSELADLEDREAHLKAQLEHVDEILR 58 (202)
Q Consensus 27 ~EvesLRsEla~~eEREa~lkAqLehvDEvLR 58 (202)
.|+++++.+++.++++-+.+++++.+.+.++.
T Consensus 237 ~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 237 EELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555566666666665554
No 67
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=43.09 E-value=21 Score=29.13 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=30.4
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhccee
Q 028920 27 TELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGY 65 (202)
Q Consensus 27 ~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarlSgY 65 (202)
+.+..+.-||..+|.||.+||+|...+-+.-+.+.+.-|
T Consensus 72 ~~l~~~~~~L~~Le~r~e~Lk~~~~~~~~~~~~~~a~~~ 110 (120)
T PF04521_consen 72 AQLSDLNLELEKLERREEQLKTQIQVLTAAAKLAKAPVY 110 (120)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 367788889999999999999998877666666555433
No 68
>PF06401 Alpha-2-MRAP_C: Alpha-2-macroglobulin RAP, C-terminal domain ; InterPro: IPR010483 The alpha-2-macroglobulin receptor-associated protein (RAP) is a intracellular glycoprotein that binds to the 2-macroglobulin receptor and other members of the low density lipoprotein receptor family. The protein inhibits binding of all currently known ligands of these receptors []. Two different studies have provided conflicting domain boundaries.; GO: 0008201 heparin binding, 0050750 low-density lipoprotein particle receptor binding, 0005783 endoplasmic reticulum; PDB: 2FCW_A 2P03_A 2FTU_A 2P01_A.
Probab=42.96 E-value=33 Score=30.02 Aligned_cols=36 Identities=42% Similarity=0.586 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHhhhcChHHHH---HHHHHhhhhHHHHHh
Q 028920 23 ELTATELESLRSELADLEDRE---AHLKAQLEHVDEILR 58 (202)
Q Consensus 23 elt~~EvesLRsEla~~eERE---a~lkAqLehvDEvLR 58 (202)
.+|..|++|||.||---|.|- .++++||+...+-++
T Consensus 125 nFT~~ELeSlkeEL~HfE~rl~K~~H~~~el~~~~~k~~ 163 (214)
T PF06401_consen 125 NFTEDELESLKEELKHFEKRLEKHRHYQEELELSHEKLK 163 (214)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999888775 567788887777665
No 69
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=42.51 E-value=56 Score=24.36 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=48.7
Q ss_pred cceeeEEeecceeEeeeeecCC---CCCCcceeehhhhccCCCCcccCC-CceEEEEEEEeecceeeeecccceeehhhH
Q 028920 90 WLPRFIVLHGSCIFFYLLSTDL---SPQDSTVLSDVVEVASLPSITREN-GEMQYCFYILTRHGLRIECSSISKIQVYSW 165 (202)
Q Consensus 90 WlpRFVVl~G~ciffyL~sTDL---sPQdStllsDIVEVg~lP~f~rEd-ge~~yaFyIlTrhGLR~ECSS~skiQVdsW 165 (202)
|-.+|....-.|+|..-..+|= .+++.+-|+++. |-.+ +| ....++|-|.+.+ -.|..+-.|.-.-+.|
T Consensus 17 ~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~-----~~~~~~~~~F~I~~~~-ks~~l~A~s~~Ek~~W 89 (99)
T cd01220 17 QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEES-----EHEWGVPHCFTIFGGQ-CAITVAASTRAEKEKW 89 (99)
T ss_pred ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-Eeec-----cCCcCCceeEEEEcCC-eEEEEECCCHHHHHHH
Confidence 4457777777777766555543 366666666552 3222 22 2456899998764 4477777777788999
Q ss_pred HHHhhc
Q 028920 166 LSALQT 171 (202)
Q Consensus 166 L~al~~ 171 (202)
+.+|+.
T Consensus 90 i~~i~~ 95 (99)
T cd01220 90 LADLSK 95 (99)
T ss_pred HHHHHH
Confidence 999874
No 70
>PRK02793 phi X174 lysis protein; Provisional
Probab=42.42 E-value=52 Score=23.72 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=26.4
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcce
Q 028920 25 TATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSG 64 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarlSg 64 (202)
...-+++|-..++.-...-..|++||.++-+-|++++-++
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3344556666666555555677888888888888776554
No 71
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=41.87 E-value=31 Score=27.61 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=26.2
Q ss_pred CCceEEEEEEEeecc-eeeeecccceeehhhHHHHhh
Q 028920 135 NGEMQYCFYILTRHG-LRIECSSISKIQVYSWLSALQ 170 (202)
Q Consensus 135 dge~~yaFyIlTrhG-LR~ECSS~skiQVdsWL~al~ 170 (202)
+.+-+|+|+|+.++| -.|+=...++-.=.+|+.||.
T Consensus 72 ~~~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~ 108 (116)
T cd01223 72 DTRWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALE 108 (116)
T ss_pred CcceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHH
Confidence 557899999999987 334333445566789999885
No 72
>PRK00295 hypothetical protein; Provisional
Probab=41.28 E-value=66 Score=22.95 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=23.9
Q ss_pred hhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 028920 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (202)
Q Consensus 24 lt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsar 61 (202)
....-+++|-..++.-...-..|++||..+-+-|+...
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344556666666555555667777777777777655
No 73
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.07 E-value=35 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=25.5
Q ss_pred chhhHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 22 VELTATELESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 22 velt~~EvesLRsEla~~eEREa~lkAqLehv 53 (202)
+.-+..+++.+..+++.+++...+|+.+...+
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999999998876653
No 74
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=40.96 E-value=29 Score=26.49 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=35.8
Q ss_pred CcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 18 ~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
-+.+++-..+|++.|+.+.+.++++-..|+...+-|+|+.|.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 466778888899999999999999999998877889988775
No 75
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=39.38 E-value=49 Score=25.25 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=28.7
Q ss_pred chhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 22 VELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 22 velt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
.|=..+|.+....+|+.+++|+.+|+.|+.++.
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~ 35 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLE 35 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678999999999999999999999998886
No 76
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=39.35 E-value=18 Score=26.12 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=31.7
Q ss_pred HHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEEEeeecccCCCC
Q 028920 32 LRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGE 78 (202)
Q Consensus 32 LRsEla~~eEREa~lkAqLehvDEvLRsarlSgYLyiRtRW~aLpgE 78 (202)
++.-+..+.+|-..+..-++-+|.++.. .+.|..||-|
T Consensus 41 I~k~I~~~~~R~~li~~~i~~i~~~~~~---------~~~w~~LP~E 78 (97)
T PF09372_consen 41 IKKIIENAIKRYKLINKAIEVIDNICDD---------NNYWNILPIE 78 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC---------CCchhhCCHH
Confidence 4556777889999999999999998876 7889999965
No 77
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.31 E-value=32 Score=25.00 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=10.8
Q ss_pred HHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 29 LESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 29 vesLRsEla~~eEREa~lkAqLehv 53 (202)
++.|+.++..+++.-..+.++++.+
T Consensus 96 ~~~l~~~~~~l~~~~~~~~~~~~~l 120 (129)
T cd00890 96 LETLEKQIEKLEKQLEKLQDQITEL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 78
>PRK14161 heat shock protein GrpE; Provisional
Probab=38.28 E-value=32 Score=28.72 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=23.5
Q ss_pred ccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 20 EKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 20 ekvelt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
+-|+-..+|++.|..|++++.+|-..++|.++|.-
T Consensus 19 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 19 EIVETANPEITALKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556677777777777777777777777754
No 79
>PRK02119 hypothetical protein; Provisional
Probab=38.18 E-value=76 Score=22.99 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=19.9
Q ss_pred HHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcc
Q 028920 28 ELESLRSELADLEDREAHLKAQLEHVDEILRSARLS 63 (202)
Q Consensus 28 EvesLRsEla~~eEREa~lkAqLehvDEvLRsarlS 63 (202)
-++.|-..++.-...-..|++||.++-+-|+..+-+
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 344444444444444455667777776666665533
No 80
>PF03836 RasGAP_C: RasGAP C-terminus; InterPro: IPR000593 Ras GTPase-activating protein (rasGAP) is a major contributor to the down-regulation of ras by facilitating GTP hydrolysis of activated ras. In addition, GAP participates in the down-stream effector system of the ras signalling pathway. Abnormal signal transduction involving activated ras genes plays a major role in the development of a variety of tumours. Depending on the precise genetic alteration, its location within the gene and the effects it exerts on protein function, rasGAP can theoretically function as either an oncogene or as a tumour suppressor gene [].; GO: 0005099 Ras GTPase activator activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 3ISU_A 3IEZ_A 4EZA_B 1X0H_A.
Probab=37.28 E-value=11 Score=29.42 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhc
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARL 62 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarl 62 (202)
+-..+|+++|+.=+..+++....|..||+..++-+.+++-
T Consensus 47 ~~r~~El~~l~~tl~~L~~k~~~l~~ql~~Y~~Yi~~~l~ 86 (142)
T PF03836_consen 47 EQRKQELEKLRQTLKNLNEKNKFLEEQLDSYNEYIKNCLS 86 (142)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999999988877766543
No 81
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=37.13 E-value=42 Score=27.14 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhcc
Q 028920 40 EDREAHLKAQLEHVDEILRSARLS 63 (202)
Q Consensus 40 eEREa~lkAqLehvDEvLRsarlS 63 (202)
.++.+++.+++..+...|++|++.
T Consensus 53 k~~q~~~e~RI~~L~~~L~~A~ii 76 (158)
T PRK05892 53 ADELARLDDRINELDRRLRTGPTP 76 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhCEEe
Confidence 446778889999999999999873
No 82
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=36.97 E-value=48 Score=24.67 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHH
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHVDEI 56 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehvDEv 56 (202)
...+.+|+..+.+++++-+.|+-+|..||+|
T Consensus 41 ~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~I 71 (99)
T PF10046_consen 41 KDIAAGLEKNLEDLNQKYEELQPYLQQIDQI 71 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888888875
No 83
>PRK14147 heat shock protein GrpE; Provisional
Probab=36.50 E-value=49 Score=27.39 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=28.5
Q ss_pred cccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 19 QEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 19 qekvelt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
....+-..++++.|+.|++++.+|-..+.|.++|.-
T Consensus 17 ~~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~r 52 (172)
T PRK14147 17 PPETDPLKAEVESLRSEIALVKADALRERADLENQR 52 (172)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444667899999999999999888888888864
No 84
>PRK04325 hypothetical protein; Provisional
Probab=36.40 E-value=75 Score=23.02 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=24.3
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhc
Q 028920 25 TATELESLRSELADLEDREAHLKAQLEHVDEILRSARL 62 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarl 62 (202)
...-+|.|-..++.-...-..|++||.++-+-|++++-
T Consensus 21 QE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 21 QEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33445556566655555556777888888777777653
No 85
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=36.18 E-value=9.8 Score=28.87 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=1.6
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHhhhh
Q 028920 25 TATELESLRSELADLEDREAHLKAQLEH 52 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAqLeh 52 (202)
+..++++|++|++.+.++.+.|..|...
T Consensus 18 LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 18 LESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp -------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3467888999999999988888888877
No 86
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.44 E-value=38 Score=22.68 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=15.5
Q ss_pred hhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 028920 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (202)
Q Consensus 24 lt~~EvesLRsEla~~eEREa~lkAqLehvDEvLR 58 (202)
-...+++.++.|..+++++-..|+.--+.|.++-|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33444444444444444444444334444444433
No 87
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=35.44 E-value=38 Score=26.95 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=31.6
Q ss_pred hhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHh------hhhcceeEEEee
Q 028920 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILR------SARLSGYLYIRT 70 (202)
Q Consensus 24 lt~~EvesLRsEla~~eEREa~lkAqLehvDEvLR------sarlSgYLyiRt 70 (202)
.+..|++..+.++..++.+...++++|+...+-++ .|-++|++-.+.
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~AP~dG~V~~~~ 103 (265)
T TIGR00999 51 IPRQEFESAEYALEEAQAEVQAAKSELRSAREAKDGSYVEVRSPFDGYITQKS 103 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCeEEEECCCCeEEEEEE
Confidence 35667777777777777777777777765544333 566788876653
No 88
>PRK14162 heat shock protein GrpE; Provisional
Probab=35.27 E-value=46 Score=28.31 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=31.0
Q ss_pred CCCcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 16 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 16 ~~~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
...+..++-...+++.|+.+++++.++-..+.|..+|+-
T Consensus 35 ~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 35 QEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666778899999999999998888888888864
No 89
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=35.16 E-value=22 Score=27.95 Aligned_cols=16 Identities=38% Similarity=0.656 Sum_probs=11.2
Q ss_pred EEEEEEeecc-eeeeec
Q 028920 140 YCFYILTRHG-LRIECS 155 (202)
Q Consensus 140 yaFyIlTrhG-LR~ECS 155 (202)
|+|||..||| |=|-..
T Consensus 2 yslyI~nr~G~lIy~~~ 18 (142)
T PF04099_consen 2 YSLYIFNRSGGLIYYRE 18 (142)
T ss_dssp EEEEEE-TTS-EEEEEE
T ss_pred eEEEEEeCCcceeeehh
Confidence 8999999995 555443
No 90
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=34.76 E-value=29 Score=25.27 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=14.8
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHhhhh
Q 028920 25 TATELESLRSELADLEDREAHLKAQLEH 52 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAqLeh 52 (202)
|..|.+-++..|+.+.+|-+.|.|||..
T Consensus 48 tREEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 48 TREEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555543
No 91
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=34.59 E-value=82 Score=25.47 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=42.8
Q ss_pred cceeEeeee--ecCCCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 99 GSCIFFYLL--STDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 99 G~ciffyL~--sTDLsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
|.=+.||+- ----.|--++..+.|+||-.---+--.|.+ +-|-+=-.-+..|-=--...-|+.|||+.|+.
T Consensus 34 g~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~--nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 34 GYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNL--YTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred CceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcc--cEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 455666765 444567888999999999764433333333 33333222233333233456799999999873
No 92
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.09 E-value=45 Score=27.53 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred ccCCCCcccchhhHHHHHHHHhhhc
Q 028920 13 VSSSDGQEKVELTATELESLRSELA 37 (202)
Q Consensus 13 ~s~~~~qekvelt~~EvesLRsEla 37 (202)
.+++.|++||.-.+.|+..||.+|.
T Consensus 82 ~~~~pD~~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 82 TANPPDSSKINAVAKEMENLRQSLD 106 (143)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999765
No 93
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=33.83 E-value=64 Score=26.01 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhcc
Q 028920 39 LEDREAHLKAQLEHVDEILRSARLS 63 (202)
Q Consensus 39 ~eEREa~lkAqLehvDEvLRsarlS 63 (202)
+.++.+++.+++..+...|+.|++-
T Consensus 50 ak~~~~~le~rI~~L~~~L~~A~ii 74 (156)
T TIGR01461 50 GKKRLREIDRRVRFLTKRLENLKVV 74 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCEEe
Confidence 5567788999999999999999763
No 94
>PRK14158 heat shock protein GrpE; Provisional
Probab=33.55 E-value=49 Score=28.17 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=29.0
Q ss_pred CCCcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 16 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 16 ~~~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
.+..+.++-...+++.|..|++++.+|-..+.|..+|+-
T Consensus 36 ~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~R 74 (194)
T PRK14158 36 VAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYR 74 (194)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667788888888888888888888887753
No 95
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=33.39 E-value=52 Score=24.95 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=13.8
Q ss_pred HHHHhhhcChHHHHHHHHHhhhhHHHHH
Q 028920 30 ESLRSELADLEDREAHLKAQLEHVDEIL 57 (202)
Q Consensus 30 esLRsEla~~eEREa~lkAqLehvDEvL 57 (202)
+-|+..++.++++-+.+++.++.+++.+
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~ 110 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAE 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544443
No 96
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.15 E-value=46 Score=29.08 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=28.6
Q ss_pred CcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHH
Q 028920 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVDE 55 (202)
Q Consensus 18 ~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvDE 55 (202)
..++++-..++++.|+.|++++.+|-..+.|..+|+-.
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RK 102 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRK 102 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888999998888887777777777543
No 97
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=33.13 E-value=24 Score=21.64 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=12.7
Q ss_pred HHHHHHHhhhcChHHH
Q 028920 27 TELESLRSELADLEDR 42 (202)
Q Consensus 27 ~EvesLRsEla~~eER 42 (202)
.|++.||+.|.|+|-+
T Consensus 1 ~E~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 1 REMNRLRNRISDLERQ 16 (23)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3788999999888754
No 98
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.93 E-value=72 Score=22.33 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhh
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHVDEILRSA 60 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsa 60 (202)
.+++..|+.++..+...-.+++.++..++.+++.-
T Consensus 4 ~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL 38 (106)
T PF01920_consen 4 QNKFQELNQQLQQLEQQIQQLERQLRELELTLEEL 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999999999999999999988887754
No 99
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=32.43 E-value=54 Score=28.72 Aligned_cols=43 Identities=28% Similarity=0.377 Sum_probs=25.4
Q ss_pred CCCcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 028920 16 SDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (202)
Q Consensus 16 ~~~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLR 58 (202)
..++++++-..+|+.++..+|+.....-+++++||+.+++-+.
T Consensus 205 ~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 205 SCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666555555566666666665543
No 100
>smart00338 BRLZ basic region leucin zipper.
Probab=32.04 E-value=43 Score=22.66 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehv 53 (202)
..+++.|..|...+..+-++|..++..+
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 101
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.01 E-value=55 Score=28.07 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHH
Q 028920 22 VELTATELESLRSELADLEDREAHLKAQLEHVDE 55 (202)
Q Consensus 22 velt~~EvesLRsEla~~eEREa~lkAqLehvDE 55 (202)
.+-...+++.|+.|++++++|-..++|.++|+-.
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RK 48 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKR 48 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778999999999999988888888887643
No 102
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.90 E-value=77 Score=25.01 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=31.2
Q ss_pred cchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 21 kvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
..+....+++.+...++.+|+|-+++++-++.+|...|-
T Consensus 75 ~~~~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~~~~~ 113 (134)
T cd04779 75 EQREVAQEVQLVCDQIDGLEHRLKQLKPIASQTDRAQRM 113 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557788888999999999999999888888877664
No 103
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=31.27 E-value=1.4e+02 Score=25.53 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=51.7
Q ss_pred ceeEEEeeecccCCC-CCCCCCCCCccccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccC-CCCcccCCCceEE
Q 028920 63 SGYLYIRTRWKPLPG-EPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVAS-LPSITRENGEMQY 140 (202)
Q Consensus 63 SgYLyiRtRW~aLpg-EpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~-lP~f~rEdge~~y 140 (202)
+-+|.+|+|+.+++| .+|+.-=..++|+=+.=..=.|....--|+-+|+.+ |-.+--=.++-|. +|-+..+..|-
T Consensus 126 a~~l~v~k~y~~~~g~~~~~~vvg~~~dv~~~~~~g~~~~~~~~llp~~~~~-~~~~~~~~~~PG~~~~~~~~H~~eh-- 202 (260)
T TIGR03214 126 ARFFLYKKRYQPVEGLHAPELVVGNEKDIEPEPYEGMDDVILTTLLPKELAF-DMNVHILSFEPGASHPYIETHVMEH-- 202 (260)
T ss_pred EEEEEEEeeeEEcCCCCCCCeeecCHHHCCccccCCCCcEEEEEeCchhcCC-CcEEEEEEECCCcccCCccccccee--
Confidence 446889999999999 888765566666655544334455443333677777 4444434455554 44333333322
Q ss_pred EEEEEeecce
Q 028920 141 CFYILTRHGL 150 (202)
Q Consensus 141 aFyIlTrhGL 150 (202)
-+|||.=+|.
T Consensus 203 ~~yiL~G~G~ 212 (260)
T TIGR03214 203 GLYVLEGKGV 212 (260)
T ss_pred EEEEEeceEE
Confidence 3499988886
No 104
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=30.94 E-value=63 Score=27.32 Aligned_cols=6 Identities=67% Similarity=0.861 Sum_probs=2.1
Q ss_pred HHhhhc
Q 028920 32 LRSELA 37 (202)
Q Consensus 32 LRsEla 37 (202)
++.+++
T Consensus 156 ~~~~i~ 161 (423)
T TIGR01843 156 LEAELA 161 (423)
T ss_pred HHHHHH
Confidence 333333
No 105
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.88 E-value=71 Score=25.73 Aligned_cols=53 Identities=21% Similarity=0.457 Sum_probs=38.5
Q ss_pred ccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcc----------c-CCCceEEEEEEEe
Q 028920 89 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSIT----------R-ENGEMQYCFYILT 146 (202)
Q Consensus 89 DWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~----------r-Edge~~yaFyIlT 146 (202)
-|--+|||+.+.=||||-...|-+.|...+ +.+.+. .|. + ...+.-|-|.|++
T Consensus 19 gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~---vldl~~--~fhv~~V~asDVi~a~~kDiP~IF~I~~ 82 (112)
T cd01242 19 GWKKQYVVVSSRKILFYNDEQDKENSTPSM---ILDIDK--LFHVRPVTQGDVYRADAKEIPKIFQILY 82 (112)
T ss_pred CceEEEEEEeCCEEEEEecCccccCCCcEE---EEEccc--eeeeecccHHHeeecCcccCCeEEEEEe
Confidence 499999999999999999888877665444 444443 222 2 2347788999988
No 106
>PRK00846 hypothetical protein; Provisional
Probab=30.73 E-value=1.2e+02 Score=22.66 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhccee
Q 028920 27 TELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGY 65 (202)
Q Consensus 27 ~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarlSgY 65 (202)
.=+|.|-..++....--..|+.||.++-+=|+.++-|+.
T Consensus 27 ~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~ 65 (77)
T PRK00846 27 QALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLF 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 345666666666666677788888888888888875553
No 107
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.65 E-value=52 Score=24.91 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHH
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHVDEIL 57 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehvDEvL 57 (202)
+.++..|+.+++.++.+-+.+.|+++-|+..+
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44556667777777777777777777766554
No 108
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=30.62 E-value=60 Score=23.58 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=26.7
Q ss_pred cccchhhHHHHHHHHhhhcChHHHHHHHHHh
Q 028920 19 QEKVELTATELESLRSELADLEDREAHLKAQ 49 (202)
Q Consensus 19 qekvelt~~EvesLRsEla~~eEREa~lkAq 49 (202)
.|-.+.-.+.+..+|..|+.+|.|-+.|.||
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788889999999999999999998875
No 109
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=30.61 E-value=49 Score=22.39 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=8.9
Q ss_pred HHHHHHHhhhcChHHHHHHHHH
Q 028920 27 TELESLRSELADLEDREAHLKA 48 (202)
Q Consensus 27 ~EvesLRsEla~~eEREa~lkA 48 (202)
.|.+.|+.++..+...-..|++
T Consensus 40 ~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 40 SENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444443333333
No 110
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=30.59 E-value=45 Score=29.38 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=34.8
Q ss_pred CCcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 17 DGQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 17 ~~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
+-++||.-...+-+.|..+|+.+|.|-+.-++||+...
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n 214 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMN 214 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999998764
No 111
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=30.13 E-value=50 Score=23.84 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.5
Q ss_pred HHHHHHHhhhhHHHHHhhhhcc
Q 028920 42 REAHLKAQLEHVDEILRSARLS 63 (202)
Q Consensus 42 REa~lkAqLehvDEvLRsarlS 63 (202)
=++|.+.-++||+++|+.|-++
T Consensus 24 ~~~Q~~~v~~ni~~~L~~aG~~ 45 (101)
T cd06155 24 VEEQMESIFSKLREILQSNGLS 45 (101)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4568899999999999998654
No 112
>PF15406 PH_6: Pleckstrin homology domain
Probab=29.73 E-value=1.1e+02 Score=24.87 Aligned_cols=63 Identities=25% Similarity=0.483 Sum_probs=48.1
Q ss_pred cceeEeeeeecC-CCCCCcceeehhhhccCCCCcccCCCceEEEEEEEeecceeeeecccceeehhhHHHHhhc
Q 028920 99 GSCIFFYLLSTD-LSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHGLRIECSSISKIQVYSWLSALQT 171 (202)
Q Consensus 99 G~ciffyL~sTD-LsPQdStllsDIVEVg~lP~f~rEdge~~yaFyIlTrhGLR~ECSS~skiQVdsWL~al~~ 171 (202)
|-=+.||-.+.| -+|.+-+=|+|++|+- .+|-..|.|=+ .-|-..|+-+|..+ =|+|+.+|..
T Consensus 48 GKGLLF~~K~~dka~P~GiinLadase~~-------~~g~~kF~f~~-~G~khtF~A~s~aE--RD~Wv~~lk~ 111 (112)
T PF15406_consen 48 GKGLLFFSKAEDKASPSGIINLADASEPE-------KDGSNKFHFKI-KGHKHTFEAASAAE--RDNWVAQLKA 111 (112)
T ss_pred CceEEEEeccccccCCcceEehhhccccc-------cCCCceEEEEe-CCceeeeecCCHHH--hccHHHHhhc
Confidence 445778887655 3799999999999984 36666676666 66778899888766 5999998863
No 113
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=29.56 E-value=47 Score=29.41 Aligned_cols=45 Identities=36% Similarity=0.453 Sum_probs=33.4
Q ss_pred CcccchhhHHHHHHHHhhhcChHHHHHHHH----HhhhhHHHHHhhhhc
Q 028920 18 GQEKVELTATELESLRSELADLEDREAHLK----AQLEHVDEILRSARL 62 (202)
Q Consensus 18 ~qekvelt~~EvesLRsEla~~eEREa~lk----AqLehvDEvLRsarl 62 (202)
..++.-|+.+|-|.||.||+..||--.-|+ |.=.|.-|+=|---|
T Consensus 35 ~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGl 83 (208)
T KOG4010|consen 35 ASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGL 83 (208)
T ss_pred hhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 346778999999999999999999766554 444577777665433
No 114
>PRK02119 hypothetical protein; Provisional
Probab=29.49 E-value=67 Score=23.27 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=21.2
Q ss_pred HHHHHHhhhcChHHHHHHHHHhhhhHHHHH
Q 028920 28 ELESLRSELADLEDREAHLKAQLEHVDEIL 57 (202)
Q Consensus 28 EvesLRsEla~~eEREa~lkAqLehvDEvL 57 (202)
|.+.+-.-|.++|+|-|+...-++.+++++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v 32 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQAL 32 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888888777777776665
No 115
>PRK00736 hypothetical protein; Provisional
Probab=29.10 E-value=1.4e+02 Score=21.34 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=26.8
Q ss_pred cchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhc
Q 028920 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARL 62 (202)
Q Consensus 21 kvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarl 62 (202)
|+-....-+|.|-..++.-...-..|+.||..+-+-|+++.-
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344445666666666665566778888888777777653
No 116
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=29.05 E-value=67 Score=23.12 Aligned_cols=34 Identities=18% Similarity=0.467 Sum_probs=22.9
Q ss_pred ccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 20 EKVELTATELESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 20 ekvelt~~EvesLRsEla~~eEREa~lkAqLehv 53 (202)
.||.-...+|..||.++..+.+--+.-..+|+|+
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566667788888888877776555555555543
No 117
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.00 E-value=77 Score=24.93 Aligned_cols=27 Identities=37% Similarity=0.574 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhh
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEH 52 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLeh 52 (202)
..|+..|+.|++.++.....|.++|..
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 118
>PF14301 DUF4376: Domain of unknown function (DUF4376)
Probab=28.92 E-value=85 Score=22.25 Aligned_cols=43 Identities=30% Similarity=0.382 Sum_probs=31.2
Q ss_pred CCCccccCCCCcccchhhHHHHHHHHhhhcChH----HHHHHHHHhhhh
Q 028920 8 RGLPWVSSSDGQEKVELTATELESLRSELADLE----DREAHLKAQLEH 52 (202)
Q Consensus 8 ~~l~W~s~~~~qekvelt~~EvesLRsEla~~e----EREa~lkAqLeh 52 (202)
..+.|.. .+...|.+|++++-.+-..++.-. .|+..||++++.
T Consensus 55 ~~~~W~~--adn~~v~lt~~~l~~~~~a~~~~~~~~~~~~~~lk~~i~a 101 (111)
T PF14301_consen 55 ESFFWKD--ADNSFVPLTAEQLIALAQAMAAHVQACFQRARALKAAIEA 101 (111)
T ss_pred CceeccC--CCCCEeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568874 444459999999999888876543 567778877764
No 119
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=28.89 E-value=76 Score=25.14 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=27.5
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 27 TELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 27 ~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
.-++.+..|+..++.|...++.+++.|-+.++.
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888889999999999999999887764
No 120
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.46 E-value=42 Score=33.33 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=28.1
Q ss_pred hhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHH
Q 028920 24 LTATELESLRSELADLEDREAHLKAQLEHVDEI 56 (202)
Q Consensus 24 lt~~EvesLRsEla~~eEREa~lkAqLehvDEv 56 (202)
=..+||+.||+||......|..|..|+..++.-
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~ 454 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNN 454 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhcccc
Confidence 357899999999999999999999996665543
No 121
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=28.30 E-value=77 Score=27.94 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 25 TATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
...++++||.|...++++-..+++|++.-|.+...
T Consensus 37 l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~ 71 (308)
T PF11382_consen 37 LEDQFDSLREENDELRAELDALQAQLNAADQFIAA 71 (308)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888888888777776554
No 122
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=28.12 E-value=91 Score=26.01 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEEEe
Q 028920 25 TATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIR 69 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarlSgYLyiR 69 (202)
+..|+-.+..||+..+..-.++++|+..+|+-..++.++=++|-.
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~sti~i~l~~~ 204 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYSTITISLYEP 204 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEEEEEEec
Confidence 566777888889888888899999999999999999998777765
No 123
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.95 E-value=1.1e+02 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=31.9
Q ss_pred hhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEE
Q 028920 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLY 67 (202)
Q Consensus 24 lt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsarlSgYLy 67 (202)
.+..+++.|+.++..+......++.+++++-+-+...+..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIV 46 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 34457777777777777777778888888888887777766553
No 124
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.94 E-value=41 Score=34.22 Aligned_cols=42 Identities=36% Similarity=0.471 Sum_probs=35.0
Q ss_pred CCCCcccchhhHHHHHHHHhhhcChHH-HHHHHHHhhhhHHHH
Q 028920 15 SSDGQEKVELTATELESLRSELADLED-REAHLKAQLEHVDEI 56 (202)
Q Consensus 15 ~~~~qekvelt~~EvesLRsEla~~eE-REa~lkAqLehvDEv 56 (202)
+.+.++-|.+.-+|+|.|++++-.++. +..++-++|+|+|=.
T Consensus 270 ~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~ 312 (716)
T KOG4593|consen 270 LRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLL 312 (716)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 346678899999999999999999887 556778999999844
No 125
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=27.77 E-value=76 Score=25.61 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhhhHHHHHhhhhc
Q 028920 39 LEDREAHLKAQLEHVDEILRSARL 62 (202)
Q Consensus 39 ~eEREa~lkAqLehvDEvLRsarl 62 (202)
+.++.+.+.+++..++..|+.|++
T Consensus 52 Ak~~~~~~e~rI~~L~~~L~~A~i 75 (157)
T PRK01885 52 GKKRLREIDRRVRFLTKRLENLKV 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHccCEE
Confidence 344567888899999999999886
No 126
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=27.73 E-value=71 Score=29.91 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCCCcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 028920 15 SSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (202)
Q Consensus 15 ~~~~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsar 61 (202)
+++.+.++.-+++|++.|+.|++..+.--.-+ .+|..||+.|++++
T Consensus 71 ~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L-~~L~~i~~~l~~~~ 116 (593)
T PF06248_consen 71 ENEIQPQLRDAAEELQELKRELEENEQLLEVL-EQLQEIDELLEEVE 116 (593)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 35567778888888999999888776554443 37788888887766
No 127
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=27.70 E-value=58 Score=21.00 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=17.3
Q ss_pred hhhHHHHHhhhhcceeEEEeee
Q 028920 50 LEHVDEILRSARLSGYLYIRTR 71 (202)
Q Consensus 50 LehvDEvLRsarlSgYLyiRtR 71 (202)
..+.+|++.-|+=.||=++.-.
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~e 47 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEEE 47 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHHH
Confidence 3478999999999999776443
No 128
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=27.58 E-value=58 Score=27.13 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhh
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQL 50 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqL 50 (202)
|-+..+++-|+++..+++-|-+.||++|
T Consensus 91 e~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 91 ETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888999999988888888887
No 129
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.46 E-value=92 Score=22.46 Aligned_cols=34 Identities=32% Similarity=0.475 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHH
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEHVDEI 56 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLehvDEv 56 (202)
+....+++.|+.+|..++.+.+.+.++++-+..-
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999988888888887766543
No 130
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=27.43 E-value=79 Score=24.87 Aligned_cols=23 Identities=9% Similarity=0.442 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhc
Q 028920 40 EDREAHLKAQLEHVDEILRSARL 62 (202)
Q Consensus 40 eEREa~lkAqLehvDEvLRsarl 62 (202)
.++.+++.+++..+.+.|..|+.
T Consensus 53 ~~~~~~~~~ri~~l~~~L~~a~i 75 (157)
T PRK00226 53 KEEQGFIEGRIRELEDKLSNAEV 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHhCee
Confidence 44556778888889999998875
No 131
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=27.36 E-value=80 Score=30.73 Aligned_cols=41 Identities=32% Similarity=0.479 Sum_probs=33.6
Q ss_pred ccchhhHHHHHHHHhhhcChHHHHHHHH-HhhhhHHHHHhhh
Q 028920 20 EKVELTATELESLRSELADLEDREAHLK-AQLEHVDEILRSA 60 (202)
Q Consensus 20 ekvelt~~EvesLRsEla~~eEREa~lk-AqLehvDEvLRsa 60 (202)
+-+||-..|+-.|..|+|.+|||-|... .+-.+|-|.+.|.
T Consensus 317 dlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEsc 358 (455)
T KOG3850|consen 317 DLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESC 358 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998654 5667888888775
No 132
>PRK14144 heat shock protein GrpE; Provisional
Probab=27.12 E-value=71 Score=27.46 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=28.6
Q ss_pred CcccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 18 ~qekvelt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
+++.++-..++++.|..|++++.+|-..+.|.++|+-
T Consensus 43 ~~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~R 79 (199)
T PRK14144 43 GHPSYTALEEQLTLAEQKAHENWEKSVRALAELENVR 79 (199)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667888999999988888888888887764
No 133
>PHA01750 hypothetical protein
Probab=27.08 E-value=71 Score=24.45 Aligned_cols=32 Identities=28% Similarity=0.601 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
|+-..|+..||.||.++.-|..++..|.+.+-
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik 69 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIK 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45678999999999999999988888877654
No 134
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.93 E-value=44 Score=29.68 Aligned_cols=57 Identities=28% Similarity=0.277 Sum_probs=31.5
Q ss_pred CCCcccchhhHHHHHH-----------------HHhhhcChHHHHHHHHHhhhh-------HHHHHhhhhcceeEEEeee
Q 028920 16 SDGQEKVELTATELES-----------------LRSELADLEDREAHLKAQLEH-------VDEILRSARLSGYLYIRTR 71 (202)
Q Consensus 16 ~~~qekvelt~~Eves-----------------LRsEla~~eEREa~lkAqLeh-------vDEvLRsarlSgYLyiRtR 71 (202)
++.+|+++..++|=|. ||.+++.+|||-..|..||-. +-+|=+.+-=||--+.+-+
T Consensus 45 s~k~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLPs~tEmp~Ll~dv~q~Gl~sgL~fd~~~ 124 (211)
T COG3167 45 SGKLEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLPSDTEMPNLLADVNQAGLSSGLTFDLFM 124 (211)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHhhhccCceeeccC
Confidence 4667777776666555 455556666666666666532 2223333444565555555
Q ss_pred c
Q 028920 72 W 72 (202)
Q Consensus 72 W 72 (202)
|
T Consensus 125 p 125 (211)
T COG3167 125 P 125 (211)
T ss_pred C
Confidence 4
No 135
>PRK14154 heat shock protein GrpE; Provisional
Probab=26.91 E-value=68 Score=27.74 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=26.1
Q ss_pred cchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 21 KVELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 21 kvelt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
+++-..++++.|+.+++++.++-..++|..+|.-
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyR 86 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLR 86 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888888777753
No 136
>COG1342 Predicted DNA-binding proteins [General function prediction only]
Probab=26.80 E-value=48 Score=26.43 Aligned_cols=51 Identities=35% Similarity=0.380 Sum_probs=31.2
Q ss_pred ccccCCCCcccchhhHHHHHHHHh-hhcChHHHHHHHHHhhh--hHHHHHhhhh
Q 028920 11 PWVSSSDGQEKVELTATELESLRS-ELADLEDREAHLKAQLE--HVDEILRSAR 61 (202)
Q Consensus 11 ~W~s~~~~qekvelt~~EvesLRs-Ela~~eEREa~lkAqLe--hvDEvLRsar 61 (202)
|-+.+....+.|+||.+|+|.||- .+.++..-||-++-+.. -+=..|.|||
T Consensus 21 P~g~~~~~~~~V~lt~eElEAlRLvD~~~l~QeeAA~rMgISr~Tfwr~l~sAR 74 (99)
T COG1342 21 PEGVPLEELEPVILTIEELEALRLVDYEGLTQEEAALRMGISRQTFWRLLTSAR 74 (99)
T ss_pred cCCCCcccCcceeecHHHHHHHHHHhHhhccHHHHHHHhcccHHHHHHHHHHHH
Confidence 445556668999999999999993 33344445554443321 2344555555
No 137
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=26.55 E-value=35 Score=26.26 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=18.7
Q ss_pred ccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 20 EKVELTATELESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 20 ekvelt~~EvesLRsEla~~eEREa~lkAqLehv 53 (202)
++++-..++++.|+.+++++.++-..+.|.++++
T Consensus 11 ~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~ 44 (165)
T PF01025_consen 11 EEIEELEEELEELEKEIEELKERLLRLQAEFENY 44 (165)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666655555555544
No 138
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.44 E-value=41 Score=32.60 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=10.7
Q ss_pred eEEEeeecccCCCC
Q 028920 65 YLYIRTRWKPLPGE 78 (202)
Q Consensus 65 YLyiRtRW~aLpgE 78 (202)
=+=.|||--.+-+.
T Consensus 69 ~~DfRt~~Dsi~yk 82 (489)
T PF11853_consen 69 GGDFRTRYDSIQYK 82 (489)
T ss_pred eeEEEEEEeccccc
Confidence 34568998888888
No 139
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=26.28 E-value=11 Score=30.38 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=16.5
Q ss_pred HHhhhcChHHHHHHHHHhhhhHHHHHhhh
Q 028920 32 LRSELADLEDREAHLKAQLEHVDEILRSA 60 (202)
Q Consensus 32 LRsEla~~eEREa~lkAqLehvDEvLRsa 60 (202)
|+..++.++++-+.|+++...+..+|...
T Consensus 79 L~~~~~~l~~ei~~L~~~~~~l~~ll~~~ 107 (172)
T cd04790 79 LRRRLAELNREIQRLRQQQRAIATLLKQP 107 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555556666666666665443
No 140
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.13 E-value=87 Score=28.11 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=23.7
Q ss_pred HHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 028920 31 SLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (202)
Q Consensus 31 sLRsEla~~eEREa~lkAqLehvDEvLRsar 61 (202)
-|+.|+.+++++.++|+++.+..+.-+.+.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777888888877777777777666
No 141
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=25.91 E-value=98 Score=24.41 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=35.5
Q ss_pred ccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 20 EKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 20 ekvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
+++.-+-+|++.|+..++.+.|.-+.|+-.-+|+-+.|..
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999888874
No 142
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=25.76 E-value=1.6e+02 Score=24.43 Aligned_cols=48 Identities=35% Similarity=0.566 Sum_probs=29.0
Q ss_pred HHHHhhhcChHHHHHHHHHhhhhHHHHHhhhhcceeEEEeeecccCCCCCCC
Q 028920 30 ESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGEPPP 81 (202)
Q Consensus 30 esLRsEla~~eEREa~lkAqLehvDEvLRsarlSgYLyiRtRW~aLpgEppp 81 (202)
.-||..-.++|+|-++--.+|..| -+|-|.|.|-| ..-.--.|||.||
T Consensus 35 ~~Lk~rk~~Lee~L~~kl~ELk~l--ClrEAELTG~L--P~E~PL~pGEk~P 82 (138)
T PF11819_consen 35 RALKKRKQALEERLAQKLEELKKL--CLREAELTGEL--PPEYPLEPGEKPP 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccC--CCccCCCCCCCCC
Confidence 334555555555544444444443 47899999965 2333577898877
No 143
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=25.57 E-value=1e+02 Score=26.88 Aligned_cols=51 Identities=29% Similarity=0.451 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhh---HHHHHhhhhcc---eeEEEeeecc
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEH---VDEILRSARLS---GYLYIRTRWK 73 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLeh---vDEvLRsarlS---gYLyiRtRW~ 73 (202)
+++-+||+.+|.|-+....|+...+++.+. ..+||..--|- +=.-++.||.
T Consensus 149 ~~Ll~ELekIKkER~ee~~~~e~~~~~~~~~~~~~~~~~~NpLl~~~~~~~~kr~W~ 205 (244)
T PF04889_consen 149 AALLRELEKIKKERAEEKARKEEEKAEEEEKEREENILSGNPLLNASGDFKVKRRWD 205 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCCCccccCCc
Confidence 677899999999998888887777555443 34455444331 1223556663
No 144
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.44 E-value=97 Score=24.06 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=33.9
Q ss_pred ccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhh
Q 028920 20 EKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRS 59 (202)
Q Consensus 20 ekvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRs 59 (202)
+++.-+.+|++.|+..++.+.|--+.|+-.-+|+-+.|.-
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999998888888777653
No 145
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.44 E-value=1.8e+02 Score=25.48 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=36.4
Q ss_pred hHHHHHHHHhhhcChHHHHHH----HHHhhhhHHHHHhhhhc-ceeEEEeeecccCCCCCCCCCCCCccccceeeEEeec
Q 028920 25 TATELESLRSELADLEDREAH----LKAQLEHVDEILRSARL-SGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHG 99 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~----lkAqLehvDEvLRsarl-SgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G 99 (202)
+.+|-+.||.|++.+.++... ++++.+.+-+.|....- ..|- +-.| +--.+-+.|.-.|++=.|
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~~~~~~-i~A~----------Vi~r~~~~~~~~i~IdkG 139 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLSSDEYK-ISAE----------VIYLNYDNYSTQVVINKG 139 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCc-eEEE----------EEEeCCCccccEEEEcCc
Confidence 456777888887766333222 66666667777766542 2222 3222 222344678877776655
Q ss_pred c
Q 028920 100 S 100 (202)
Q Consensus 100 ~ 100 (202)
+
T Consensus 140 s 140 (283)
T TIGR00219 140 F 140 (283)
T ss_pred c
Confidence 4
No 146
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=25.41 E-value=29 Score=27.26 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=8.9
Q ss_pred hhhcChHHHHHHHHHhhhhH
Q 028920 34 SELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 34 sEla~~eEREa~lkAqLehv 53 (202)
.+++.++++...|..+++..
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 147
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=25.15 E-value=1.1e+02 Score=25.32 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsar 61 (202)
|-+..|.+.|+.||..+...-++.-++.+.+...-|.||
T Consensus 23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR 61 (159)
T PF05384_consen 23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQAR 61 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999888888887777777777777766
No 148
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=25.11 E-value=69 Score=27.19 Aligned_cols=21 Identities=48% Similarity=0.601 Sum_probs=17.6
Q ss_pred chhhHHHHHHHHhhhcChHHH
Q 028920 22 VELTATELESLRSELADLEDR 42 (202)
Q Consensus 22 velt~~EvesLRsEla~~eER 42 (202)
..|+.+|-|.||.||+..||-
T Consensus 24 ~~LsEeE~eeLr~EL~KvEeE 44 (162)
T PF04201_consen 24 EGLSEEEREELRSELAKVEEE 44 (162)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 478889999999999888764
No 149
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=25.08 E-value=32 Score=30.20 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=14.3
Q ss_pred ccchhhHHHHHHHHhhhcChH
Q 028920 20 EKVELTATELESLRSELADLE 40 (202)
Q Consensus 20 ekvelt~~EvesLRsEla~~e 40 (202)
.||..+..||..||+.||.+=
T Consensus 122 qKIsALEdELs~LRaQIA~IV 142 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIV 142 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777776653
No 150
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.95 E-value=1.7e+02 Score=21.46 Aligned_cols=75 Identities=19% Similarity=0.339 Sum_probs=44.0
Q ss_pred eeeEEee--cceeEeeeeecCCCCCCcceeehhhhc--cCCCCcccCCC-------ceEEEEEEEeecc-----eeeeec
Q 028920 92 PRFIVLH--GSCIFFYLLSTDLSPQDSTVLSDVVEV--ASLPSITRENG-------EMQYCFYILTRHG-----LRIECS 155 (202)
Q Consensus 92 pRFVVl~--G~ciffyL~sTDLsPQdStllsDIVEV--g~lP~f~rEdg-------e~~yaFyIlTrhG-----LR~ECS 155 (202)
+|++-|. |..+++ ....=+.+.+.-+++|=|| |..|..-++.. ....+|-|+-..+ |-+-|.
T Consensus 23 ~~~f~ld~~~~~l~W--~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~lVA~ 100 (115)
T cd01248 23 RRLFRLDEKGFFLYW--KDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLDLVAP 100 (115)
T ss_pred eEEEEEcCCCcEEEE--eCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEEEEEC
Confidence 4555553 444333 2333235677888888876 77775444332 2235777775555 667777
Q ss_pred ccceeehhhHHHHhh
Q 028920 156 SISKIQVYSWLSALQ 170 (202)
Q Consensus 156 S~skiQVdsWL~al~ 170 (202)
|.... +.|.+.|+
T Consensus 101 s~~~a--~~W~~gL~ 113 (115)
T cd01248 101 SEEEA--KTWVSGLR 113 (115)
T ss_pred CHHHH--HHHHHHHh
Confidence 66554 46888775
No 151
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=24.33 E-value=1.2e+02 Score=23.26 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 028920 22 VELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (202)
Q Consensus 22 velt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsar 61 (202)
+.-..+|+++++..+++++++...++.-|+..=++.+-|+
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq 44 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ 44 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777777777777777777776666666554
No 152
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=24.25 E-value=36 Score=24.75 Aligned_cols=20 Identities=40% Similarity=0.793 Sum_probs=15.9
Q ss_pred eecccCCCCCCCCCCCCccc
Q 028920 70 TRWKPLPGEPPPIDDTDVDD 89 (202)
Q Consensus 70 tRW~aLpgEpppiDDtdVDD 89 (202)
.-|...-|++||.|.+|-|.
T Consensus 22 ~~W~~~tg~~~P~~~~d~~~ 41 (78)
T PF14019_consen 22 QVWKKVTGREPPKDPDDPDR 41 (78)
T ss_pred HHHHHHcCCCCCCCCCCccc
Confidence 35888899999988887764
No 153
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=23.96 E-value=1.7e+02 Score=25.66 Aligned_cols=67 Identities=30% Similarity=0.367 Sum_probs=47.3
Q ss_pred hHHHHHHHHhhhcChHHH---HHHHHHhhhhHHHHHhhhhcc-eeEEEeeecccCCCCCCCCCCCCccccceeeEEeecc
Q 028920 25 TATELESLRSELADLEDR---EAHLKAQLEHVDEILRSARLS-GYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGS 100 (202)
Q Consensus 25 t~~EvesLRsEla~~eER---Ea~lkAqLehvDEvLRsarlS-gYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ 100 (202)
++.|-|.||.|++.++.+ -..|+++..++-+.|-++.-. .|=++-++=.. -+.|.|-.+.|+-.|+
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~~~~~~~~~~a~Vi~----------~~~~~~~~~ivId~Gs 140 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKESSSDYDPIAARVIS----------RSPDPWSQTIVIDKGS 140 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccceeeEEEE----------ecCCchhcEEEEecCc
Confidence 567788899888776654 567889999999999888776 46666554332 2445577777776665
Q ss_pred e
Q 028920 101 C 101 (202)
Q Consensus 101 c 101 (202)
=
T Consensus 141 ~ 141 (284)
T COG1792 141 N 141 (284)
T ss_pred c
Confidence 3
No 154
>PRK14127 cell division protein GpsB; Provisional
Probab=23.86 E-value=59 Score=25.62 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=25.6
Q ss_pred cccchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHH
Q 028920 19 QEKVELTATELESLRSELADLEDREAHLKAQLEHVDE 55 (202)
Q Consensus 19 qekvelt~~EvesLRsEla~~eEREa~lkAqLehvDE 55 (202)
++=...-+.++|.|-.|++.++++-+.|+++|+..-.
T Consensus 29 D~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 29 DKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667777777888888887788877776544
No 155
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.33 E-value=1.1e+02 Score=23.80 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=19.2
Q ss_pred HHHHHHhhhcChHHHHHHHHHhhhhHHHHH
Q 028920 28 ELESLRSELADLEDREAHLKAQLEHVDEIL 57 (202)
Q Consensus 28 EvesLRsEla~~eEREa~lkAqLehvDEvL 57 (202)
|-|.|+.=-..+++..++++.+|+++|+.+
T Consensus 70 EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 70 EKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444333445667777888888888765
No 156
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.11 E-value=94 Score=27.60 Aligned_cols=10 Identities=50% Similarity=0.670 Sum_probs=3.6
Q ss_pred HHHhhhcChH
Q 028920 31 SLRSELADLE 40 (202)
Q Consensus 31 sLRsEla~~e 40 (202)
.|..||..+|
T Consensus 61 ~l~~eL~~LE 70 (314)
T PF04111_consen 61 ELLQELEELE 70 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 157
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.10 E-value=1.3e+02 Score=23.01 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=21.7
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 028920 27 TELESLRSELADLEDREAHLKAQLEHVDEILR 58 (202)
Q Consensus 27 ~EvesLRsEla~~eEREa~lkAqLehvDEvLR 58 (202)
+.++.|..+|..+|++....+..++.|.+.+.
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~ 176 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISERLK 176 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776665443
No 158
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.84 E-value=87 Score=22.08 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=24.6
Q ss_pred cchhhHHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHhhhh
Q 028920 21 KVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61 (202)
Q Consensus 21 kvelt~~EvesLRsEla~~eEREa~lkAqLehvDEvLRsar 61 (202)
|+-....-+|.|-..++.-...-..|+.||.++-+-|++.+
T Consensus 12 ~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 12 KLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444455677777777777777777788888777777765
No 159
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.74 E-value=82 Score=23.44 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhhH
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEHV 53 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLehv 53 (202)
++.....+.+..+++.+++..+.+++.++++
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (116)
T cd04769 82 QALEDKKQEIRAQITELQQLLARLDAFEASL 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444433
No 160
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.50 E-value=1.3e+02 Score=24.31 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=6.5
Q ss_pred hHHHHHHHHhhhcChHH
Q 028920 25 TATELESLRSELADLED 41 (202)
Q Consensus 25 t~~EvesLRsEla~~eE 41 (202)
...+++.+|.++....+
T Consensus 75 l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 75 LRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444333333
No 161
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=22.26 E-value=1.1e+02 Score=24.66 Aligned_cols=73 Identities=21% Similarity=0.460 Sum_probs=44.4
Q ss_pred eeeEEeecceeEeeeeecCCCCCCcceeehhhhccC--CCCcc----------------cC-CCceEEEEEEEeecceee
Q 028920 92 PRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVAS--LPSIT----------------RE-NGEMQYCFYILTRHGLRI 152 (202)
Q Consensus 92 pRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~--lP~f~----------------rE-dge~~yaFyIlTrhGLR~ 152 (202)
|=.|-|+..|+.||.+-.|..|-.----.|+=++.. .|.+. +| ++.|=||.=++
T Consensus 22 Pf~vwLrd~~V~YfvLradp~p~~~~~~~d~Dd~~~~~~p~~~~~~~~~~~~~~~~~~vheq~dGti~Amc~t------- 94 (126)
T PF14784_consen 22 PFSVWLRDKCVYYFVLRADPKPPEEFEKEDIDDVSNLYYPFWLDKEIDRGNWDEKKFSVHEQEDGTIFAMCMT------- 94 (126)
T ss_pred CcEEEEcCceEEEEEEeCCCCCccccccccCCCcccccccccccCcccccccccCCcceeEeccceEEEEEec-------
Confidence 445678888999999999998877433444444432 23221 22 22444553332
Q ss_pred eecccceeehhhHHHHhhccc
Q 028920 153 ECSSISKIQVYSWLSALQTDC 173 (202)
Q Consensus 153 ECSS~skiQVdsWL~al~~d~ 173 (202)
...++--.-||++-|+.+.
T Consensus 95 --g~~~~~sL~~WI~~Lq~~N 113 (126)
T PF14784_consen 95 --GTSDKDSLLSWIRGLQETN 113 (126)
T ss_pred --cCCCHHHHHHHHHHHHhhC
Confidence 2445666789999998643
No 162
>PRK14159 heat shock protein GrpE; Provisional
Probab=22.03 E-value=95 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
++-..+++.|+.|++++.++-..++|..+|.-
T Consensus 26 ~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~r 57 (176)
T PRK14159 26 NIEDVEQNKLQKDYDELKDKYMRANAEFENIK 57 (176)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999988888888888888764
No 163
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=21.94 E-value=85 Score=23.22 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHHHHHh
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHVDEILR 58 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehvDEvLR 58 (202)
...++.||.||+....=....++.|..+++-++
T Consensus 3 ~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe 35 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPLDEETRAELSSLDDDIE 35 (85)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 457888999988643323333444444444433
No 164
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.54 E-value=1.5e+02 Score=28.13 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=39.1
Q ss_pred CCCCcccchhhHHHHHHHHhhhcChHHHHHHHHHhhh--------------hHHHHHhhhhcceeEEEeeeccc
Q 028920 15 SSDGQEKVELTATELESLRSELADLEDREAHLKAQLE--------------HVDEILRSARLSGYLYIRTRWKP 74 (202)
Q Consensus 15 ~~~~qekvelt~~EvesLRsEla~~eEREa~lkAqLe--------------hvDEvLRsarlSgYLyiRtRW~a 74 (202)
+...++.++-..+|++.+++|+++++++-+.++.+.+ ..=+++...+-+++.++=+-|.+
T Consensus 210 ~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~~~~~l~GWvP 283 (646)
T PRK05771 210 EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFLKTDKTFAIEGWVP 283 (646)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEee
Confidence 3455777777778888888888877766555444221 12234555667888888888874
No 165
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.53 E-value=84 Score=22.00 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=14.6
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhhhHHHHH
Q 028920 27 TELESLRSELADLEDREAHLKAQLEHVDEIL 57 (202)
Q Consensus 27 ~EvesLRsEla~~eEREa~lkAqLehvDEvL 57 (202)
.+.+.+..+|..++.....+..+++.+-+-|
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445445555455555544444443
No 166
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=21.42 E-value=1e+02 Score=31.14 Aligned_cols=103 Identities=22% Similarity=0.481 Sum_probs=72.1
Q ss_pred HHHHHhhh---hcceeEEEeeecccCCCCCCCCCCCCccccceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCC
Q 028920 53 VDEILRSA---RLSGYLYIRTRWKPLPGEPPPIDDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLP 129 (202)
Q Consensus 53 vDEvLRsa---rlSgYLyiRtRW~aLpgEpppiDDtdVDDWlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP 129 (202)
+++.|-+. .+-|+||.+.- + -.-|=--|+||+-+=+||.-++|-=.|-|=+.|.|.-+-..--
T Consensus 307 lq~Fl~s~~~pei~GfL~~K~d----g----------kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt 372 (622)
T KOG3751|consen 307 LQNFLSSSSPPEIQGFLYLKED----G----------KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYT 372 (622)
T ss_pred HHHHHhcCCCccccceeeeccc----c----------cccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEE
Confidence 34555442 46688887642 1 2358888999999999999999999999999998875533211
Q ss_pred Cc---ccCCCceEEEEEEE------eecceeeeecccceeehhhHHHHhh
Q 028920 130 SI---TRENGEMQYCFYIL------TRHGLRIECSSISKIQVYSWLSALQ 170 (202)
Q Consensus 130 ~f---~rEdge~~yaFyIl------TrhGLR~ECSS~skiQVdsWL~al~ 170 (202)
.+ +.-.--|-|.|-|- -+.+|++-|+-- +--.++||+|||
T Consensus 373 ~i~~rKkyksPTd~~f~~K~~~~~~~~r~lk~lCAED-e~t~~~WltAiR 421 (622)
T KOG3751|consen 373 GIGGRKKYKSPTDYGFCIKPNKLRNKRRFLKMLCAED-EQTRTCWLTAIR 421 (622)
T ss_pred eecchhccCCCCCceEEeeeccccCcccceeeeeccc-chhHHHHHHHHH
Confidence 11 11222466777774 348999999864 445799999998
No 167
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=21.26 E-value=94 Score=23.50 Aligned_cols=32 Identities=13% Similarity=0.335 Sum_probs=26.0
Q ss_pred EEEEEEEee-cc-eeeeecccceeehhhHHHHhh
Q 028920 139 QYCFYILTR-HG-LRIECSSISKIQVYSWLSALQ 170 (202)
Q Consensus 139 ~yaFyIlTr-hG-LR~ECSS~skiQVdsWL~al~ 170 (202)
-++|+|... ++ -+|+|.-.|.-+=+.|+.+|+
T Consensus 59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~ 92 (97)
T cd01222 59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLK 92 (97)
T ss_pred CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHH
Confidence 489999776 44 578888888888899999986
No 168
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.15 E-value=1.1e+02 Score=25.53 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
+-..++++.|+.|++++.++-..+.|..+|+-
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~r 54 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVR 54 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778888888888888888888887763
No 169
>PRK14146 heat shock protein GrpE; Provisional
Probab=21.07 E-value=1.2e+02 Score=26.11 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=24.9
Q ss_pred chhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 22 VELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 22 velt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
++-..++++.|+.+++++.++-..++|.++|+-
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~r 88 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFK 88 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788888888888888888888888763
No 170
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=20.83 E-value=1.3e+02 Score=25.54 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=10.6
Q ss_pred HHHHHHHhhhcChHHHHHHHHHhhh
Q 028920 27 TELESLRSELADLEDREAHLKAQLE 51 (202)
Q Consensus 27 ~EvesLRsEla~~eEREa~lkAqLe 51 (202)
++++.++.+++.++.+-+++++|++
T Consensus 144 ~~~~~l~~~i~~~~~~i~~~~~~l~ 168 (423)
T TIGR01843 144 AQLELILAQIKQLEAELAGLQAQLQ 168 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 171
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.74 E-value=1.4e+02 Score=23.45 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 26 ATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 26 ~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
..|+..+-.||.++.+.-+.|+++..++-
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 172
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=20.54 E-value=1.5e+02 Score=22.26 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=27.4
Q ss_pred HHHHHHHHhhhcC------hHHHHHHHHHhhhhHHHHHhhhh
Q 028920 26 ATELESLRSELAD------LEDREAHLKAQLEHVDEILRSAR 61 (202)
Q Consensus 26 ~~EvesLRsEla~------~eEREa~lkAqLehvDEvLRsar 61 (202)
.+.+|.||.++.. -++....|.++.-|||-+++.|.
T Consensus 17 Pe~fe~lr~~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~k 58 (83)
T PF11333_consen 17 PEAFEQLRQELIEEMIESAPEEMQPRLRALQFHIDMQRSRCK 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3557777776543 46778899999999999988753
No 173
>PF08690 GET2: GET complex subunit GET2; InterPro: IPR014802 This family corresponds to the GET complex subunit GET2. The GET complex is involved in the retrieval of ER resident proteins from the Golgi []. ; PDB: 3SJD_D 3ZS9_C.
Probab=20.53 E-value=1.1e+02 Score=27.39 Aligned_cols=31 Identities=39% Similarity=0.509 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHh--hhhHHHHHh
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQ--LEHVDEILR 58 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAq--LehvDEvLR 58 (202)
||+++|-..||.| .|||.+||= -..+|.|.-
T Consensus 1 els~aEkrRLrRE-----RReAKi~~GgaSaRLnKITg 33 (302)
T PF08690_consen 1 ELSEAEKRRLRRE-----RREAKIKAGGASARLNKITG 33 (302)
T ss_dssp ---HHHHHHHHHH-----HHHHHHHCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-----HHHHHHHCCCcHHHHHHHhc
Confidence 7999999999975 799999741 234444443
No 174
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=20.27 E-value=1.1e+02 Score=24.10 Aligned_cols=72 Identities=28% Similarity=0.208 Sum_probs=40.6
Q ss_pred hhHHHHHHHHhhhcChHHHHHHHHHhhh--hHHHHHhhhhcceeEEEeeecccCCCCCCCCCCC--CccccceeeEEeec
Q 028920 24 LTATELESLRSELADLEDREAHLKAQLE--HVDEILRSARLSGYLYIRTRWKPLPGEPPPIDDT--DVDDWLPRFIVLHG 99 (202)
Q Consensus 24 lt~~EvesLRsEla~~eEREa~lkAqLe--hvDEvLRsarlSgYLyiRtRW~aLpgEpppiDDt--dVDDWlpRFVVl~G 99 (202)
.|+.|||+|.+|.+=+|-|-+..|+|-| +-+...- -+++. +.-=.++|+.+|-.+-. -++.=+||.+=+.|
T Consensus 2 ~t~~eLe~iQ~et~LleAq~~~akaq~el~~~~~~~~---~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~P~v~~I~G 76 (119)
T TIGR03021 2 TTVGQLEALQSETALLEAQLARAKAQNELEEAERGGQ---VGGPG--MPFTSGVPPMALTGANPTSAPAILLPRVVEIFG 76 (119)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cCcCC--cccccccCCCCccccccccccCCCCCEEEEEEc
Confidence 5789999999999988887766666543 2222110 01121 11113555554333221 11455899998888
Q ss_pred c
Q 028920 100 S 100 (202)
Q Consensus 100 ~ 100 (202)
.
T Consensus 77 ~ 77 (119)
T TIGR03021 77 R 77 (119)
T ss_pred c
Confidence 5
No 175
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.26 E-value=49 Score=35.17 Aligned_cols=77 Identities=26% Similarity=0.326 Sum_probs=42.0
Q ss_pred cceeeEEeecceeEeeeeecCCCCCCcceeehhhhccCCCCcccCCC--------ceEEEEEEE-------eecceeeee
Q 028920 90 WLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENG--------EMQYCFYIL-------TRHGLRIEC 154 (202)
Q Consensus 90 WlpRFVVl~G~ciffyL~sTDLsPQdStllsDIVEVg~lP~f~rEdg--------e~~yaFyIl-------TrhGLR~EC 154 (202)
|=-||-+|||.||+|+=---|=.--..+-.-|+ -+-|+-.+ --...|||- ++--|-+||
T Consensus 1008 WhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDL------t~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~ 1081 (1116)
T KOG3640|consen 1008 WHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDL------TKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEK 1081 (1116)
T ss_pred hhhhhHHhcCCeeeeecCcchhcccCcceeeeh------hhhhccccccchhhhccCCceeEEEeecccccccCcchhhh
Confidence 999999999999999853222111111111111 11111111 112367776 233333444
Q ss_pred ------cccceeehhhHHHHhhcc
Q 028920 155 ------SSISKIQVYSWLSALQTD 172 (202)
Q Consensus 155 ------SS~skiQVdsWL~al~~d 172 (202)
|--+|--.++||++|+.-
T Consensus 1082 r~Rv~LaADTkeel~~Wls~iN~t 1105 (1116)
T KOG3640|consen 1082 RLRVMLAADTKEELQSWLSAINDT 1105 (1116)
T ss_pred cceeeeecccHHHHHHHHHHHHHH
Confidence 455677789999999853
No 176
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.15 E-value=86 Score=23.14 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=6.6
Q ss_pred cChHHHHHHHHHhhhhHH
Q 028920 37 ADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 37 a~~eEREa~lkAqLehvD 54 (202)
+.++++-+.+.+.++.++
T Consensus 85 ~~l~~~i~~l~~~~~~l~ 102 (108)
T cd01107 85 AELEAEIEELQRILRLLE 102 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 177
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.13 E-value=1.1e+02 Score=26.57 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHhhhcChHHHHHHHHHhhhhHH
Q 028920 23 ELTATELESLRSELADLEDREAHLKAQLEHVD 54 (202)
Q Consensus 23 elt~~EvesLRsEla~~eEREa~lkAqLehvD 54 (202)
.....|+|+||+.+..+||--+.|.||..+..
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlE 94 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLE 94 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999999999999876653
No 178
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=20.13 E-value=1.3e+02 Score=26.56 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=20.2
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHhhhhHHHH
Q 028920 25 TATELESLRSELADLEDREAHLKAQLEHVDEI 56 (202)
Q Consensus 25 t~~EvesLRsEla~~eEREa~lkAqLehvDEv 56 (202)
+..|...|-.|+.-+++|.+.|.-+|.++++.
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~ 118 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEE 118 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666553
Done!