BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028921
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FRR1|PRA1E_ARATH PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1
Length = 209
Score = 163 bits (413), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/178 (51%), Positives = 122/178 (68%), Gaps = 4/178 (2%)
Query: 15 TSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCY 74
+STS T + T + RA+ TTQS+ +T RPWRE+LD+ A++ P EA HLK N+ Y
Sbjct: 21 SSTSNTTIIGTLS--ARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISY 78
Query: 75 FRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDG--PLVVFHRTVDDRVLL 132
FR NYA+ VLAI+FL L++HP+SMI FIVVFI W LYF RD +V+ + VDD+++L
Sbjct: 79 FRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVL 138
Query: 133 GILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSV 190
+L +VT+++LV T V NVLVSL+IG IVG H AFR T+DL+ DE GL S
Sbjct: 139 VLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEESARRGGLVSA 196
>sp|Q9C889|PR1F2_ARATH PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
Length = 189
Score = 146 bits (369), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 115/177 (64%), Gaps = 4/177 (2%)
Query: 8 HYGSLPPTSTSPTYVPPTT-AFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATI 66
+YG++P TS+ P+ P +++RA+ +S +TRRPW+ + D ++T P +A
Sbjct: 3 NYGAIP-TSSHPS--PAIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAIS 59
Query: 67 HLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTV 126
+K NL YFR NYA+ VL ILFLSLL+HP S+IV ++ + W FLYF RD PLVVF +
Sbjct: 60 RIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQI 119
Query: 127 DDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVA 183
DDR +L L V+T+V L+LTH N+L SLL +V +HAA R +++L+ DE A
Sbjct: 120 DDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAA 176
>sp|O80915|PR1B4_ARATH PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1
Length = 220
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 7/192 (3%)
Query: 3 SQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVG 62
S AP S PP +T P F+ + +T ++ S RRPW EL D A+++P S+
Sbjct: 19 SAAPSSVESQPPIAT-----PAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESIS 73
Query: 63 EATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLV 120
+A + +++N YF+VNY + AI+ SL+ HP S++ + + +W FLY FR D P+V
Sbjct: 74 DAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIV 133
Query: 121 VFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEG 180
+F RT DR LG L + +I + LT V ++ +++IG ++ H AFR EDL+ DE
Sbjct: 134 LFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQ 193
Query: 181 EVADNGLFSVVG 192
E A G S +G
Sbjct: 194 EPAATGFLSFLG 205
>sp|Q9LIC7|PR1F4_ARATH PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1
Length = 188
Score = 139 bits (349), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 97/151 (64%)
Query: 29 LTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILF 88
++RA+ + +TRR WR + D+H+ P V + +K NL YFR NYA+++L ++F
Sbjct: 22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIF 81
Query: 89 LSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHV 148
SL+WHP S+IVF + W FLYF RD PL VF +DDR +L L V+TIV L+LT+
Sbjct: 82 FSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNA 141
Query: 149 WLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
N++ +L+ G +V +HA R T+DL+ DE
Sbjct: 142 TFNIVAALMAGAVLVLIHAVIRKTDDLFLDE 172
>sp|Q9FLB6|PR1B3_ARATH PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1
Length = 217
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 16 STSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYF 75
S P P FL+R + + S RRPW EL+D AI+RP S+ +A ++RNL YF
Sbjct: 20 SQQPVSTPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYF 79
Query: 76 RVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLVVFHRTVDDRVLLG 133
+VNY IV +L LSLL HP S++V + +F AW FLY FR D PLVV RT DR LG
Sbjct: 80 KVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLG 139
Query: 134 ILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFS 189
+L ++TIV + LT V + +L+IGF IV LH AFR EDL+ D+ E A+ GL S
Sbjct: 140 VLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLS 195
>sp|P93829|PRA1D_ARATH PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1
Length = 182
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 103/153 (67%)
Query: 29 LTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILF 88
+T ++T QS+ RPW + LD+ A + PSS+ +AT + +NL +FR+NY++I+ +L
Sbjct: 6 ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLG 65
Query: 89 LSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHV 148
L+L+ P++++ FI V +AWFFLYF R+ PL +F T+DD ++ +L ++I SLV T V
Sbjct: 66 LTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTTGV 125
Query: 149 WLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGE 181
WL L ++ G ++ LHAA RGT+DL D+ E
Sbjct: 126 WLRALTTVGFGVLVLILHAALRGTDDLVSDDLE 158
>sp|Q9LIC6|PR1F3_ARATH PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1
Length = 188
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 114/172 (66%), Gaps = 2/172 (1%)
Query: 8 HYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIH 67
+YG++P +S + V + L+RA+ ++ +TRR WR + D H++ P V +A
Sbjct: 3 NYGAIPTSSHASPLVDVES--LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTR 60
Query: 68 LKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVD 127
+K NL YFR+NYA++VL ++F SL+WHP S+IVF V+ + W FLYF RD P+ +F +D
Sbjct: 61 IKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQID 120
Query: 128 DRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
DR +L +L V+T+V L+LT+ N++ +L+ G +V +H+ R TEDL+ DE
Sbjct: 121 DRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDE 172
>sp|Q9M012|PR1B5_ARATH PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1
Length = 223
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 103/186 (55%), Gaps = 4/186 (2%)
Query: 13 PP--TSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKR 70
PP T+ + P AF+ +T S RPW ELLD A T+P S+ EA ++
Sbjct: 22 PPIVTAVVESQPPVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRK 81
Query: 71 NLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLVVFHRTVDD 128
N YFRVNY IV IL SLL HP S+I+ + + +W FLY FR D PL++F R+ +
Sbjct: 82 NSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSE 141
Query: 129 RVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLF 188
LG L + TI + T V ++ +L+IG + +H AFR +DL+ DE + A +G
Sbjct: 142 YETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQDHAASGFL 201
Query: 189 SVVGTP 194
S +G P
Sbjct: 202 SFIGVP 207
>sp|Q9LYN0|PR1B1_ARATH PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1
Length = 209
Score = 122 bits (307), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 101/176 (57%), Gaps = 2/176 (1%)
Query: 16 STSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYF 75
S P P F +R + + S RRPW EL+D ++ RP S+ +A +++NL YF
Sbjct: 17 SQPPINTPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYF 76
Query: 76 RVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLVVFHRTVDDRVLLG 133
+VNY IV +L SL HP+S++V I + W FLY FR D PLVVF RT DR L
Sbjct: 77 KVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLL 136
Query: 134 ILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFS 189
L + TIV + +T V + +L+IG IV +H AF +DL+ DE E A+ GL S
Sbjct: 137 ALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPANAGLLS 192
>sp|Q9LYQ4|PR1B6_ARATH PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1
Length = 216
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 102/184 (55%), Gaps = 10/184 (5%)
Query: 14 PTSTSPTYVP--------PTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEAT 65
PTST+P +P L+R T + + RPW EL+D A +RP S+ EAT
Sbjct: 7 PTSTTPDQLPGGDPQLLSSLRVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEAT 66
Query: 66 IHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR--DGPLVVFH 123
+++N YFR NY +V +L SLL HP ++ + + +W FLYFFR D PLV+
Sbjct: 67 SRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGG 126
Query: 124 RTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVA 183
RT D LGIL + T+V + +T V ++ +L +G V +H AFR EDL+ +E E
Sbjct: 127 RTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186
Query: 184 DNGL 187
+GL
Sbjct: 187 GSGL 190
>sp|Q9SIY7|PR1B2_ARATH PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1
Length = 213
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 95/153 (62%), Gaps = 2/153 (1%)
Query: 43 RRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFI 102
RRPW EL+D + RP S+ ++ +++NL YF+VNY+ IV +L SLL HP S++V +
Sbjct: 46 RRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLL 105
Query: 103 VVFIAWFFLYFFR--DGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGF 160
+ +W FLY FR D PLV+F R+ DR L L + TIV + +T V + +L IG
Sbjct: 106 SLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGI 165
Query: 161 FIVGLHAAFRGTEDLYCDEGEVADNGLFSVVGT 193
IV LH AFR +DL+ DE E A+ GL S +G
Sbjct: 166 AIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGN 198
>sp|Q9FZ63|PR1F1_ARATH PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1
Length = 180
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 104/176 (59%), Gaps = 4/176 (2%)
Query: 9 YGSLPPTSTSPTYVPPTTAFLTRA-RDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIH 67
YG+ +S + P ++TR +S +TRRPW+++LD+ + P +
Sbjct: 4 YGTNQKSSND---LAPKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITR 60
Query: 68 LKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVD 127
++ N YF+ NY ++VL +FLSL+W+P S++V + + AW FLYF RD PL VF R +D
Sbjct: 61 IRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREID 120
Query: 128 DRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVA 183
R++L I+ V+T+ L LT LN+ V+++ G V HAA R TEDL+ + E +
Sbjct: 121 HRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETS 176
>sp|Q9FH16|PR1G2_ARATH PRA1 family protein G2 OS=Arabidopsis thaliana GN=PRA1G2 PE=2 SV=1
Length = 186
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 4/185 (2%)
Query: 13 PPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNL 72
PP T + PT ++R+ + S+ RPW EL+ + P S + K N
Sbjct: 5 PPPITYISIPLPTNDVVSRSIHNLTTAISSHRPWSELIFSGDFSLPESFSSLLLRSKTNF 64
Query: 73 CYFRVNYAMIVLAILFLSLL-WHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVL 131
YF VNY +IV +L+ PV++IV + W +FFR+ PL+++ V DR +
Sbjct: 65 NYFFVNYTIIVSTCAAFALITASPVALIVVGAIIALWLIFHFFREDPLILWSFQVGDRTV 124
Query: 132 LGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDEGEVADNGLFSVV 191
L L + ++ ++ T+ +N+ V + +G + +HA FR +++L+ +E + + GL +
Sbjct: 125 LLFLVLASVWAIWFTNSAVNLAVGVSVGLLLCIIHAVFRNSDELFLEEDDAINGGL---I 181
Query: 192 GTPIR 196
G+ +R
Sbjct: 182 GSNLR 186
>sp|Q9ZWD1|PR1G1_ARATH PRA1 family protein G1 OS=Arabidopsis thaliana GN=PRA1G1 PE=2 SV=1
Length = 187
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 33 RDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLL 92
+ SV S R W E L +I RPSS A +K NL +F VNY ++ A + L L+
Sbjct: 28 HNLIASVSSYRPWWSEFLAFGSIDRPSSFSPAVSRVKLNLHHFAVNYVLLTAASITLFLI 87
Query: 93 WHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVW--- 149
P++++ W LYF+RD PLV++ R + DRV+ + L+L +W
Sbjct: 88 GDPMALVTVASFVAMWLLLYFYRDHPLVLYGRHISDRVI--------VFGLILGSLWALW 139
Query: 150 -LNVLVSLLIG----FFIVGLHAAFRGTEDLYCDEGEV 182
+N L L++G + +HA R ++DL+ E +V
Sbjct: 140 FINSLQCLILGVVTSVLLCLVHAIIRNSDDLFVQEKDV 177
>sp|Q9UI14|PRAF1_HUMAN Prenylated Rab acceptor protein 1 OS=Homo sapiens GN=RABAC1 PE=1
SV=1
Length = 185
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 6/179 (3%)
Query: 2 SSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSV 61
Q L T+ P +P R+ + +T RPW +D +RP ++
Sbjct: 6 DQQKDAEAEGLSGTTLLPKLIPSGAG-----REWLERRRATIRPWSTFVDQQRFSRPRNL 60
Query: 62 GEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR-DGPLV 120
GE L RN+ Y++ NY + L ++ ++ P+ ++ V F A + LY + LV
Sbjct: 61 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLESKLV 120
Query: 121 VFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
+F R V + G ++ L V L ++G HAAF E + +E
Sbjct: 121 LFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEE 179
>sp|Q8HY39|PRAF1_CANFA Prenylated Rab acceptor protein 1 OS=Canis familiaris GN=RABAC1
PE=2 SV=1
Length = 185
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 8/183 (4%)
Query: 1 MSSQAPPHYGSLPPTSTSPTYVP---PTTAFLTRARDTTQSVFSTRRPWRELLDIHAITR 57
M+++ + P ++ T +P P+ A R+ + +T RPW +D +R
Sbjct: 1 MAAEKDQQKDAEPEGLSATTLLPKLIPSGA----GRERLERRRATIRPWSSFVDQRRFSR 56
Query: 58 PSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR-D 116
P ++GE L RN+ Y++ NY + L ++ ++ P+ ++ V F A + LY
Sbjct: 57 PRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQ 116
Query: 117 GPLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLY 176
V+F R V + G V+ L V L ++G HAAF E +
Sbjct: 117 SKFVLFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQMEAVD 176
Query: 177 CDE 179
+E
Sbjct: 177 GEE 179
>sp|Q9Z0S9|PRAF1_MOUSE Prenylated Rab acceptor protein 1 OS=Mus musculus GN=Rabac1 PE=1
SV=1
Length = 185
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 6/179 (3%)
Query: 2 SSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSV 61
Q L T+ P +P R+ + +T RPW +D +RP +V
Sbjct: 6 DQQKDAEGEGLSATTLLPKLIPSGAG-----REWLERRRATIRPWGTFVDQQRFSRPRNV 60
Query: 62 GEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR-DGPLV 120
GE L RN+ Y++ NY + L ++ ++ P+ ++ V F A + LY LV
Sbjct: 61 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKLV 120
Query: 121 VFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
+F R V + G V+ L V L ++G HAAF E +E
Sbjct: 121 LFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVLIGSHAAFHQMEPADGEE 179
>sp|O35394|PRAF1_RAT Prenylated Rab acceptor protein 1 OS=Rattus norvegicus GN=Rabac1
PE=1 SV=1
Length = 185
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 72/179 (40%), Gaps = 6/179 (3%)
Query: 2 SSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSV 61
Q L T+ P +P R+ + +T RPW +D +RP +V
Sbjct: 6 DQQKDAEVEGLSATTLLPKLIPSGAG-----REWLERRRATIRPWGTFVDQQRFSRPRNV 60
Query: 62 GEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR-DGPLV 120
GE L RN+ Y++ NY + L ++ ++ P+ ++ V F A + LY LV
Sbjct: 61 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKLV 120
Query: 121 VFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
+F R V + G V+ L V L ++G HAAF E +E
Sbjct: 121 LFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVLIGSHAAFHQIEPADGEE 179
>sp|Q52NJ0|PRAF1_PIG Prenylated Rab acceptor protein 1 OS=Sus scrofa GN=RABAC1 PE=2 SV=1
Length = 185
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 6/179 (3%)
Query: 2 SSQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSV 61
Q L T+ P +P R+ + +T RPW +D +RP ++
Sbjct: 6 DQQKDAEAEGLSATTLLPKLIPSGAG-----REWLERRRATIRPWGSFVDQRRFSRPRNL 60
Query: 62 GEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR-DGPLV 120
GE L RN+ Y++ NY + L ++ ++ P+ ++ V F A + LY V
Sbjct: 61 GELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACYILYLRTLQSKFV 120
Query: 121 VFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
+F R V + G V+ L V L ++G HAAF E + +E
Sbjct: 121 LFGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEE 179
>sp|Q1G3K7|PRA1C_ARATH PRA1 family protein C OS=Arabidopsis thaliana GN=PRA1C PE=2 SV=1
Length = 127
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 75 FRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGI 134
FR NY +I + +F+S+LW PV + VF+++ +AW ++Y + P V+F +DD L+ +
Sbjct: 3 FRTNYIVIFIVSIFISMLWQPVHLSVFVILIVAWLYVYSRDNEPWVIFGSVIDDSTLVLV 62
Query: 135 LGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAF-RGTEDLYC---DEGEVADN 185
L V+TI +LT V +++ +L G +V +H R TE L+ DE +VA N
Sbjct: 63 LLVLTIGIFLLTDVSRGIVIGVLAGLPVVLVHGMCRRNTEMLFVLEDDEEKVAMN 117
>sp|Q1RMH4|PRAF1_BOVIN Prenylated Rab acceptor protein 1 OS=Bos taurus GN=RABAC1 PE=2 SV=1
Length = 185
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 69/178 (38%), Gaps = 6/178 (3%)
Query: 3 SQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVG 62
Q L + P +P R+ + +T R W +D +RP ++G
Sbjct: 7 QQKDAEAEGLSAATLLPKLIPSGAG-----REWLERRRATIRSWGSFVDQRRFSRPRNLG 61
Query: 63 EATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFR-DGPLVV 121
E L RN+ Y++ NY + L ++ + P+ ++ V F A + LY V+
Sbjct: 62 ELCQRLVRNVEYYQSNYVFVFLGLILYCVATSPMLLVALAVFFGACYILYLRTLQSKFVL 121
Query: 122 FHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFRGTEDLYCDE 179
F R V + G V+ L V L ++G HAAF E + +E
Sbjct: 122 FGREVSPAHQYALAGGVSFPFFWLAGAGSAVFWVLGATLVVIGSHAAFHQIEAVDGEE 179
>sp|Q9UUN5|PRA1_SCHPO PRA1-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPCC306.02c PE=2 SV=1
Length = 171
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 29 LTRARDTTQSVFSTRRPW-------RELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAM 81
+T+ +T ++++R + E LD+ I+RP + EA + N F NY
Sbjct: 8 ITKVSETFSEIYASRAQYLSGFKSVGEFLDVRRISRPRNFSEAQSRISFNFSRFSSNYLA 67
Query: 82 IVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTI- 140
I+ ++ +L+ +P+ +IV + + + + L + HR + ++ L IL V I
Sbjct: 68 IIAMLVIYALIRNPLLLIVIGIGVGGVYGIRKLQGADLQLSHRVISNQNLYVILACVLIP 127
Query: 141 ----VSLVLTHVWL 150
S + T +WL
Sbjct: 128 LGLFASPIETIIWL 141
>sp|Q8LFP1|PRA1H_ARATH PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
Length = 241
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 58 PSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDG 117
PSS +A + + N+ F NYA + + +L P++++ + W + D
Sbjct: 118 PSSSQQARMRVHENIKRFARNYATLFIVFFACALYQMPLALVGLLGSLALWELFKYCSDK 177
Query: 118 PLVVFHRTVDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAAFR 170
H ++ ++ +GI T V L +V + + +L I + ++ LHA FR
Sbjct: 178 WKFDRHPSM-RKLSIGIGQCATAVLLTFLNVQMALFSALAISYSVMILHAGFR 229
>sp|P53633|PRA1_YEAST Prenylated Rab acceptor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YIP3 PE=1 SV=2
Length = 176
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 34 DTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIV 83
+ QS +T R +E + I++P + GE + NL YF NY +I+
Sbjct: 27 QSLQSKLATLRTPQEFFNFKKISKPQNFGEVQSRVAYNLKYFSSNYGLII 76
>sp|Q54NS7|PRAFB_DICDI PRA1 family protein 2 OS=Dictyostelium discoideum GN=prafB PE=3
SV=2
Length = 158
Score = 35.4 bits (80), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 44 RPWRELLDIHAITRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIV 103
+PW + ++ + P S A ++ NL ++ NY IV +L ++L + ++ ++
Sbjct: 10 QPWNDFIEWGRYSIPGS-QNAITRMEDNLNFYSGNYIAIVAVVLLITLFTNMNLLVAILL 68
Query: 104 VFIAWFFLYFFRDGPLVVFHRTVDDRVLLGILGVVTIV 141
+ ++L+F + G + + + + ILGVV+++
Sbjct: 69 LGAIGYYLFFVQKGDKNIGFAVLTPMIQMVILGVVSVI 106
>sp|P34358|CED7_CAEEL ABC transporter ced-7 OS=Caenorhabditis elegans GN=ced-7 PE=1 SV=6
Length = 1704
Score = 34.3 bits (77), Expect = 0.63, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 71 NLCYFRVNYAMIVLAILFLSLLWHPVSMIVFIVVFIAWFFLYFFRDGPLV-----VFHRT 125
+L Y + Y++I L LF+ L +H M + + I ++FLYFF P + +F
Sbjct: 1171 SLIYDGILYSLICLIFLFMFLAFH--WMYDHLAIVILFWFLYFFSSVPFIYAVSFLFQSP 1228
Query: 126 VDDRVLLGILGVV----TIVSLVLTHVWLNV---LVSLLIGFFI 162
VLL I VV ++++ L + N+ L S+L+ F+
Sbjct: 1229 SKANVLLIIWQVVISGAALLAVFLIFMIFNIDEWLKSILVNIFM 1272
>sp|Q54XK1|PRAFA_DICDI PRA1 family protein 1 OS=Dictyostelium discoideum GN=prafA PE=3
SV=1
Length = 235
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 11 SLPPTSTSPTYVPPTTAFLTRARDTTQSVFSTRRPWRELLDIHAITRPSSVGEATIHLKR 70
SL P+S S A ++ ++ Q T R WR + ++ + T +K
Sbjct: 72 SLEPSSISH----RVNAITSKIKEFKQERMETTRDWRSFVGSRQQYGLPNIKDTTSRIKE 127
Query: 71 NLCYFRVNYAMIVLAILFLSLLWHP 95
N+ YF+ NY ++ L ++ +P
Sbjct: 128 NVVYFQSNYLILFLCFSVFFIITNP 152
>sp|Q9Z327|SYNPO_RAT Synaptopodin OS=Rattus norvegicus GN=Synpo PE=2 SV=2
Length = 931
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 7 PHYGSLPPTSTSPTY------VPPTTAFLTRARDTTQSVFSTR 43
P SL PT+ SPTY V P+ A+ RA+ + FSTR
Sbjct: 873 PVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFSTR 915
>sp|Q8CC35|SYNPO_MOUSE Synaptopodin OS=Mus musculus GN=Synpo PE=1 SV=2
Length = 929
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 7 PHYGSLPPTSTSPTY------VPPTTAFLTRARDTTQSVFSTR 43
P SL PT+ SPTY V P+ A+ RA+ + FSTR
Sbjct: 871 PVQDSLQPTAVSPTYSSDISPVSPSRAWSPRAKQAPRPSFSTR 913
>sp|Q81A03|FTSK_BACCR DNA translocase FtsK OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=ftsK PE=3 SV=1
Length = 793
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 131 LLGILGVVTI-VSLVLTHVWLNVLVSLLIGFFIVGL 165
++G+LGV+ + VS V+ W N+L LIGF+++ L
Sbjct: 61 IIGVLGVIALSVSFVIKRGWPNLLNKRLIGFYLIVL 96
>sp|Q81WP2|FTSK_BACAN DNA translocase FtsK OS=Bacillus anthracis GN=ftsK PE=3 SV=1
Length = 793
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 131 LLGILGVVTI-VSLVLTHVWLNVLVSLLIGFFIVGL 165
++G+LGV+ + VS V+ W N+L LIGF+++ L
Sbjct: 61 IIGVLGVIALSVSFVIKRGWPNLLNKRLIGFYLIVL 96
>sp|Q9LZM7|PR1A1_ARATH PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2
SV=1
Length = 209
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 56 TRPSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSM 98
T P SV + LK NL Y+R NY ++++ IL L +L P+++
Sbjct: 35 TVPKSVPKWDSRLKCNLYYYRTNYFIMIVVILGLGVLTRPLAI 77
>sp|Q8GWC3|PR1A2_ARATH PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2
SV=1
Length = 209
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 58 PSSVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVSMI 99
P S + LK NL Y+R NY ++V+ +L L+L+ P++++
Sbjct: 37 PRSFSKWKSRLKCNLYYYRTNYFILVIFVLGLALVTRPLALV 78
>sp|Q9RQJ2|PAD_PORGI Peptidylarginine deiminase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=PG_1424 PE=1 SV=1
Length = 556
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Query: 126 VDDRVLLGILGVVTIVSLVLTHVWLNVLVSLLIGFFIVGLHAA----FRGTEDLYCDEGE 181
+++RV + + G ++ + L NV + + G+ I+G+ A + GT+ L+C E
Sbjct: 301 LNNRVFVPVNGPASVDNDAL-----NVYKTAMPGYEIIGVKGASGTPWLGTDALHCRTHE 355
Query: 182 VADNGLFSVVGTPI 195
VAD G + PI
Sbjct: 356 VADKGYLYIKHYPI 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.143 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,288,576
Number of Sequences: 539616
Number of extensions: 2915127
Number of successful extensions: 11021
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 10949
Number of HSP's gapped (non-prelim): 81
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)