Query 028921
Match_columns 202
No_of_seqs 108 out of 448
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_C Fumarate reductase 15 k 48.7 82 0.0028 23.8 7.5 46 88-133 59-110 (130)
2 1fjk_A Cardiac phospholamban; 34.7 45 0.0016 20.7 3.4 27 66-92 22-48 (52)
3 3gjo_E Dystonin; EB1 structura 26.2 32 0.0011 19.5 1.5 17 2-18 2-18 (30)
4 3arc_X Photosystem II PSBX pro 16.7 1.1E+02 0.0038 18.3 2.6 19 147-165 4-22 (39)
5 2y1b_A RCSF protein, putative 15.9 66 0.0022 24.2 1.8 25 54-78 64-88 (128)
6 3fea_A MDM4 protein; HDMX, HDM 15.1 40 0.0014 24.3 0.4 29 44-73 68-96 (100)
7 3dww_A Prostaglandin E synthas 14.8 3.9E+02 0.013 20.1 8.4 31 62-92 68-98 (158)
8 2g40_A Conserved hypothetical 14.2 74 0.0025 25.7 1.8 57 8-77 12-69 (224)
9 1x2l_A CUT-like 2, homeobox pr 14.1 1.5E+02 0.0052 21.2 3.3 31 3-38 2-32 (101)
10 3b5x_A Lipid A export ATP-bind 13.7 6.9E+02 0.023 22.4 8.5 20 60-79 120-139 (582)
No 1
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=48.70 E-value=82 Score=23.76 Aligned_cols=46 Identities=17% Similarity=0.423 Sum_probs=25.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH--H-HH--h-cCCCeEecceeechhHHHH
Q 028921 88 FLSLLWHPVSMIVFIVVFIAWFF--L-YF--F-RDGPLVVFHRTVDDRVLLG 133 (202)
Q Consensus 88 ~i~ll~~P~~Li~l~~~~~~~~~--l-~~--~-~~~p~~i~gr~~~~~~~~~ 133 (202)
.+..+.||+.++.-++..++.++ . .+ . +.-++.++|++++++.+..
T Consensus 59 fv~fl~nPivvilniiaLaa~L~Ha~TwF~l~Pka~~I~v~~~~~~~~~i~~ 110 (130)
T 1kf6_C 59 FVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIK 110 (130)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhheeeeCCCcCChHHHHH
Confidence 34556789888864333222211 1 11 1 2245888899998877543
No 2
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=34.74 E-value=45 Score=20.73 Aligned_cols=27 Identities=19% Similarity=0.544 Sum_probs=20.3
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHH
Q 028921 66 IHLKRNLCYFRVNYAMIVLAILFLSLL 92 (202)
Q Consensus 66 ~Ri~~Nl~yF~~NY~li~~~l~~i~ll 92 (202)
...+.|+.---.|+.++.+-+++++++
T Consensus 22 ~qarqnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 22 QQARQNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888988887777766665
No 3
>3gjo_E Dystonin; EB1 structural motif,+TIP protein complex, SXIP motiff, APC/ binding protein, microtubule actin cross-linking factor, CE cell division; 2.50A {Homo sapiens}
Probab=26.16 E-value=32 Score=19.47 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCCCCC
Q 028921 2 SSQAPPHYGSLPPTSTS 18 (202)
Q Consensus 2 ~~~~~~~~~~~p~~~~~ 18 (202)
|++...+.+.||+++--
T Consensus 2 sr~~~~KpSkIPTpqr~ 18 (30)
T 3gjo_E 2 SRPSTAKPSKIPTPQRK 18 (30)
T ss_pred CccCCCCCccCCCcccc
Confidence 56777899999998644
No 4
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=16.72 E-value=1.1e+02 Score=18.26 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 028921 147 HVWLNVLVSLLIGFFIVGL 165 (202)
Q Consensus 147 ~~~~~l~~~l~~s~~vvll 165 (202)
....++++++.++.+++.+
T Consensus 4 pSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 4 PSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445556666555554433
No 5
>2y1b_A RCSF protein, putative outer membrane protein, signal; phosphorelay, mucoidity, colanic acid; HET: I3C; 2.00A {Escherichia coli} PDB: 2l8y_A
Probab=15.89 E-value=66 Score=24.22 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCCCCCCHHHHHHHHHhhHhhHHHH
Q 028921 54 AITRPSSVGEATIHLKRNLCYFRVN 78 (202)
Q Consensus 54 ~fs~P~s~~~a~~Ri~~Nl~yF~~N 78 (202)
.=..|.|.++|.+|++++..+..+|
T Consensus 64 ~~d~Pasis~Ar~~lr~kAa~~gAN 88 (128)
T 2y1b_A 64 NQDSPPSIPTARKRMQINASKMKAN 88 (128)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3467789999999999999999888
No 6
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=15.12 E-value=40 Score=24.34 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.6
Q ss_pred CChhHhhcCCCCCCCCCHHHHHHHHHhhHh
Q 028921 44 RPWRELLDIHAITRPSSVGEATIHLKRNLC 73 (202)
Q Consensus 44 RPw~eF~~~~~fs~P~s~~~a~~Ri~~Nl~ 73 (202)
-+..|.++.++|++ ++.+.+..++++||.
T Consensus 68 D~LG~l~G~~sFsv-kdp~~l~~ml~~nLv 96 (100)
T 3fea_A 68 DLLGELLGRQSFSV-KDPSPLYDMLRKNLV 96 (100)
T ss_dssp SHHHHHHTCSEEET-TCCHHHHHHHHHHEE
T ss_pred CccccccCCcceee-cCchHHHHHHHhhce
Confidence 34588899999999 667999999999984
No 7
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle, isomerase, membrane, transmembrane; HET: GSH; 3.50A {Homo sapiens}
Probab=14.76 E-value=3.9e+02 Score=20.12 Aligned_cols=31 Identities=10% Similarity=-0.116 Sum_probs=23.2
Q ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q 028921 62 GEATIHLKRNLCYFRVNYAMIVLAILFLSLL 92 (202)
Q Consensus 62 ~~a~~Ri~~Nl~yF~~NY~li~~~l~~i~ll 92 (202)
++..+|+++.-..+-.|+.+..+++++..+.
T Consensus 68 ~~~~~Ra~RAh~N~lE~~p~Fl~~~ll~~l~ 98 (158)
T 3dww_A 68 DPDVERCLRAHRNDMETIYPFLFLGFVYSFL 98 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788899999888888888766666554443
No 8
>2g40_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Deinococcus radiodurans} SCOP: c.124.1.7
Probab=14.20 E-value=74 Score=25.72 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHhhhhc-ccCCCCChhHhhcCCCCCCCCCHHHHHHHHHhhHhhHHH
Q 028921 8 HYGSLPPTSTSPTYVPPTTAFLTRARDTTQS-VFSTRRPWRELLDIHAITRPSSVGEATIHLKRNLCYFRV 77 (202)
Q Consensus 8 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~RPw~eF~~~~~fs~P~s~~~a~~Ri~~Nl~yF~~ 77 (202)
+..|||++.+. . .++++|+|+.+.. .-....||.. ..+.+.++..++..+|+....+
T Consensus 12 ~~~~~~~~~~a-R-----e~iL~rIr~al~~~~~~~~~p~~~-------~~~~~~~~lle~F~~~~~~~g~ 69 (224)
T 2g40_A 12 HMTTIPSTAEA-K-----LEMLTTINRAIAGSRPEALPPYPV-------PAPLSRAEILHQFEDRILDYGA 69 (224)
T ss_dssp ---------------------------------------------------CCCHHHHHHHHHHHHHHTTC
T ss_pred cccccCCCccH-H-----HHHHHHHHHhCCCCCCCCCCCccc-------ccCCChHHHHHHHHHHHHHcCC
Confidence 34577776432 1 3799999987654 2112233221 1235678899999999876544
No 9
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=14.11 E-value=1.5e+02 Score=21.17 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHHHHHHHhhhhc
Q 028921 3 SQAPPHYGSLPPTSTSPTYVPPTTAFLTRARDTTQS 38 (202)
Q Consensus 3 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (202)
||.+..-+.||+.... +..+...++|+.+..
T Consensus 2 ~~~~~~~~p~~~~~~l-----dTk~I~~~ike~L~~ 32 (101)
T 1x2l_A 2 SSGSSGAGPGAEEEQL-----DTAEIAFQVKEQLLK 32 (101)
T ss_dssp CCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHH
T ss_pred CCCcccCCCCCCcCcc-----CHHHHHHHHHHHHHH
Confidence 4555555555555433 357888888887654
No 10
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=13.72 E-value=6.9e+02 Score=22.38 Aligned_cols=20 Identities=10% Similarity=-0.084 Sum_probs=13.7
Q ss_pred CHHHHHHHHHhhHhhHHHHH
Q 028921 60 SVGEATIHLKRNLCYFRVNY 79 (202)
Q Consensus 60 s~~~a~~Ri~~Nl~yF~~NY 79 (202)
+.++..+|+.+.+...+..|
T Consensus 120 ~~g~l~~rl~~d~~~i~~~~ 139 (582)
T 3b5x_A 120 STGGLLSRITYDSEQVAGAT 139 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 45788999877776555443
Done!