Query 028921
Match_columns 202
No_of_seqs 108 out of 448
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 07:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028921.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028921hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6c_ f.21.2.2 (C:) Fumarate 30.9 60 0.0044 22.7 6.1 44 91-134 62-111 (130)
2 d2h8aa1 f.56.1.1 (A:9-147) Mic 23.1 42 0.0031 23.1 4.1 33 60-92 55-87 (139)
3 d2axia1 a.42.1.1 (A:25-109) MD 17.3 17 0.0012 23.8 0.6 29 44-73 56-84 (85)
4 d2ftxb1 d.300.1.2 (B:155-213) 15.7 27 0.0019 21.3 1.2 8 73-80 46-53 (59)
5 d1ttva_ a.42.1.1 (A:) MDM2 {Af 15.2 25 0.0018 23.9 1.1 28 44-72 64-91 (107)
6 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 10.6 35 0.0026 21.5 0.7 19 60-78 18-36 (75)
7 d2q7ra1 f.56.1.1 (A:1-139) Ara 10.5 2.4E+02 0.018 19.1 10.9 43 55-97 39-82 (139)
8 d1h9aa1 c.2.1.3 (A:1-181,A:413 10.0 1.2E+02 0.0086 21.9 3.7 46 25-70 51-101 (195)
9 d1d5va_ a.4.5.14 (A:) Adipocyt 7.5 66 0.0048 20.9 1.0 19 60-78 26-44 (94)
10 d2hdca_ a.4.5.14 (A:) Genesis 7.3 91 0.0067 20.3 1.7 21 59-79 23-43 (97)
No 1
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=30.93 E-value=60 Score=22.68 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=23.8
Q ss_pred HHHhHHHHHHHHHHHHHHHH--H-HH--h-cCCCeEecceeechhHHHHH
Q 028921 91 LLWHPVSMIVFIVVFIAWFF--L-YF--F-RDGPLVVFHRTVDDRVLLGI 134 (202)
Q Consensus 91 ll~~P~~Li~l~~~~~~~~~--l-~~--~-~~~p~~i~gr~~~~~~~~~~ 134 (202)
.+.||+.++.-++..++.++ . ++ . +.-|+.+.|+.++++.+..+
T Consensus 62 flqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk~m~i~v~~~~~~~~~iv~~ 111 (130)
T d1kf6c_ 62 FLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKS 111 (130)
T ss_dssp HHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhcCccCChHHHHHH
Confidence 44588877763333222211 1 11 1 23468888999988775543
No 2
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.07 E-value=42 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.007 Sum_probs=24.4
Q ss_pred CHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Q 028921 60 SVGEATIHLKRNLCYFRVNYAMIVLAILFLSLL 92 (202)
Q Consensus 60 s~~~a~~Ri~~Nl~yF~~NY~li~~~l~~i~ll 92 (202)
..++-.+|+++|...--.|......+++++.+.
T Consensus 55 ~~~~~v~R~~rah~N~~E~~~~F~~~~l~~~~~ 87 (139)
T d2h8aa1 55 RTDEKVERVRRAHLNDLENIVPFLGIGLLYSLS 87 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 345678999999999999988766665555443
No 3
>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.29 E-value=17 Score=23.81 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=24.7
Q ss_pred CChhHhhcCCCCCCCCCHHHHHHHHHhhHh
Q 028921 44 RPWRELLDIHAITRPSSVGEATIHLKRNLC 73 (202)
Q Consensus 44 RPw~eF~~~~~fs~P~s~~~a~~Ri~~Nl~ 73 (202)
-|..|.|+...||+ ++..++..++++||.
T Consensus 56 D~LG~l~gv~sFsV-k~~r~l~~ml~rnLv 84 (85)
T d2axia1 56 DLLGDLFGVPSFSV-KEHRKIYTMIYRNLV 84 (85)
T ss_dssp SHHHHHHSSSEEET-TCHHHHHHHHHTTEE
T ss_pred chHHhhcCCCceee-cCcHHHHHHHHhccc
Confidence 45788999999999 678999999999973
No 4
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.74 E-value=27 Score=21.32 Aligned_cols=8 Identities=13% Similarity=0.729 Sum_probs=6.9
Q ss_pred hhHHHHHH
Q 028921 73 CYFRVNYA 80 (202)
Q Consensus 73 ~yF~~NY~ 80 (202)
.||.+||+
T Consensus 46 ~fF~tnYi 53 (59)
T d2ftxb1 46 DFYKTKYI 53 (59)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 68999996
No 5
>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=15.21 E-value=25 Score=23.87 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.4
Q ss_pred CChhHhhcCCCCCCCCCHHHHHHHHHhhH
Q 028921 44 RPWRELLDIHAITRPSSVGEATIHLKRNL 72 (202)
Q Consensus 44 RPw~eF~~~~~fs~P~s~~~a~~Ri~~Nl 72 (202)
-|..|.|+...|++ ++..++..++++|+
T Consensus 64 D~LG~llgv~sFsV-ke~r~l~~ml~rnL 91 (107)
T d1ttva_ 64 DPLGELFGVQEFSV-KEHRRIYAMISRNL 91 (107)
T ss_dssp CHHHHHHTCSCEET-TCHHHHHHHHHTTE
T ss_pred chHHhhcCCCceee-cCcHHHHHHHHhhh
Confidence 35789999999999 67899999999997
No 6
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.64 E-value=35 Score=21.47 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=10.0
Q ss_pred CHHHHHHHHHhhHhhHHHH
Q 028921 60 SVGEATIHLKRNLCYFRVN 78 (202)
Q Consensus 60 s~~~a~~Ri~~Nl~yF~~N 78 (202)
+++|..+-|.+|..||+.|
T Consensus 18 tL~eIy~~i~~~fpy~r~~ 36 (75)
T d1kq8a_ 18 TLAEINEYLMGKFPFFRGS 36 (75)
T ss_dssp CHHHHHHHHHHHCTTGGGT
T ss_pred cHHHHHHHHHHhCcccccC
Confidence 4455555555555555443
No 7
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.46 E-value=2.4e+02 Score=19.06 Aligned_cols=43 Identities=12% Similarity=-0.087 Sum_probs=27.7
Q ss_pred CCCCC-CHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHhHHH
Q 028921 55 ITRPS-SVGEATIHLKRNLCYFRVNYAMIVLAILFLSLLWHPVS 97 (202)
Q Consensus 55 fs~P~-s~~~a~~Ri~~Nl~yF~~NY~li~~~l~~i~ll~~P~~ 97 (202)
.+.|. +-++--+|..+--..|-.|+-+..+.+.+..+..+|..
T Consensus 39 v~~p~~~g~~~f~ra~RaH~N~~E~~p~~L~~l~~~~l~~~~~~ 82 (139)
T d2q7ra1 39 GRSFQRTGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCSQVP 82 (139)
T ss_dssp CSSCCSCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCCCCCHHHHHHHHHHhhhHhhHHHHHHHHHHHHhccCHHH
Confidence 34553 23445666666666677777777777777777667854
No 8
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=9.99 E-value=1.2e+02 Score=21.93 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhhhcccCCCCChhHhhcC-----CCCCCCCCHHHHHHHHHh
Q 028921 25 TTAFLTRARDTTQSVFSTRRPWRELLDI-----HAITRPSSVGEATIHLKR 70 (202)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~RPw~eF~~~-----~~fs~P~s~~~a~~Ri~~ 70 (202)
-.+|.+.+++.+++.......|.+|+.. ..++.|.+..++.+++..
T Consensus 51 ~e~f~~~v~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~l~~ 101 (195)
T d1h9aa1 51 DDEFKQLVRDSIKDFTDDQAQAEAFIEHFSYRAHDVTDAASYAVLKEAIEE 101 (195)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHTTEEEEECCTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchHhhHHHHhhccceeeEeeccHhhHHHHHHHHHH
Confidence 3588888888887766555558888865 468888999888888754
No 9
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.49 E-value=66 Score=20.95 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=12.1
Q ss_pred CHHHHHHHHHhhHhhHHHH
Q 028921 60 SVGEATIHLKRNLCYFRVN 78 (202)
Q Consensus 60 s~~~a~~Ri~~Nl~yF~~N 78 (202)
+++|..+-|..|..||+.+
T Consensus 26 tL~eIY~~i~~~fpyfr~~ 44 (94)
T d1d5va_ 26 TLNGIYQFIMDRFPFYREN 44 (94)
T ss_dssp CHHHHHHHHHHHCTHHHHC
T ss_pred cHHHHHHHHHHHCCccCcc
Confidence 5566666666666666654
No 10
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.26 E-value=91 Score=20.27 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHhhHhhHHHHH
Q 028921 59 SSVGEATIHLKRNLCYFRVNY 79 (202)
Q Consensus 59 ~s~~~a~~Ri~~Nl~yF~~NY 79 (202)
-+++|..+-|..|..||+.++
T Consensus 23 ltL~eIY~~i~~~fpyfr~~~ 43 (97)
T d2hdca_ 23 LTLSGICEFISNRFPYYREKF 43 (97)
T ss_dssp BCHHHHHHHHHHHCHHHHHHC
T ss_pred ccHHHHHHHHHHhCccccCCC
Confidence 467788888888888887765
Done!