BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028922
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 12 EANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNI 71
E N+G WT EEDQ++ + ++ +GPK+W +A K R GK CR RW N+L P +K+ +
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHLNPEVKKTSW 82
Query: 72 SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117
+++E+ +I + HK LGNRW+ IA LPGRTDN +KN+WNS + +K+
Sbjct: 83 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 48 NRCGKSCRLRWMNYLRPHIKRGNISDQEEDLIL-RLHKLLGNRWSLIAGRLPGRTDNEIK 106
NR C+ RW L P + +G + +E+ ++ + K RWS IA L GR + +
Sbjct: 7 NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCR 66
Query: 107 NYWNSHLSKKIKQ 119
W++HL+ ++K+
Sbjct: 67 ERWHNHLNPEVKK 79
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 12 EANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNI 71
E +G WT EEDQ++ + ++ +GPK+W SV AK R GK CR RW N+L P +K+ +
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 113
Query: 72 SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117
+++E+ +I + HK LGNRW+ IA LPGRTDN IKN+WNS + +K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 18 WTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEED 77
WT EED+KL + +E +G WK V A NR C+ RW L P + +G + +E+
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWK-VIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQ 67
Query: 78 LILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQ 119
+++L + G RWS+IA L GR + + W++HL+ ++K+
Sbjct: 68 RVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 12 EANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNI 71
E +G WT EEDQ++ + ++ +GPK+W SV AK R GK CR RW N+L P +K+ +
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 59
Query: 72 SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117
+++E+ +I + HK LGNRW+ IA LPGRTDN IKN+WNS + +K+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 33.5 bits (75), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 68 RGNISDQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQ 119
+G + +E+ +++L + G RWS+IA L GR + + W++HL+ ++K+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQ 74
+G WT EEDQ++ + ++ +GPK+W SV AK R GK CR RW N+L P +K+ + +++
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 75 EEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117
E+ +I + HK LGNRW+ IA LPGRTDN IKN+WNS + +K+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 68 RGNISDQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQ 119
+G + +E+ +++L + G RWS+IA L GR + + W++HL+ ++K+
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 106 bits (264), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 73/103 (70%), Gaps = 1/103 (0%)
Query: 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQ 74
+G WT EEDQK+ + ++ +G K+W ++ AK R GK CR RW N+L P +K+ + +++
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 75 EEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117
E+ +I HK+LGNRW+ IA LPGRTDN +KN+WNS + +K+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 64 PHIKRGNISDQEEDLILRLHKLLGNR-WSLIAGRLPGRTDNEIKNYWNSHLSKKIKQN 120
P + +G + +E+ ++ L K G + W+LIA L GR + + W++HL+ ++K++
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKS 60
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 7/135 (5%)
Query: 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQ 74
+G +T ED + + ++ +GP+ W + + NR K CR RW N+L P + + + +
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 75 EEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNEKPSRGSTAKDLEL 134
E++ I R + LG++WS+IA +PGRTDN IKN WNS +SK+I N S K++ L
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTN------SNHKEILL 114
Query: 135 EISKGEEKGSTVQKR 149
+ K + V K+
Sbjct: 115 PDRSKKRKAADVPKK 129
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 7 QCTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHI 66
Q K A + +T EED+ L +A+ HG WK +AA NR + CR RW NYL P I
Sbjct: 3 QVNLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSI 60
Query: 67 KRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYW 109
+ +E+ L+++ + G +W++IA PGRTD IKN W
Sbjct: 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 67 KRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNEKPSRG 126
K+ + +E++++ R G+ W +IA P R + ++ W ++L+ I
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTP----- 64
Query: 127 STAKDLELEISKGEEKG 143
TA++ L + K +E G
Sbjct: 65 WTAEEDALLVQKIQEYG 81
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 40/52 (76%)
Query: 66 IKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117
+K+ + +++E+ +I + HK LGNRW+ IA LPGRTDN IKN+WNS + +K+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 40/52 (76%)
Query: 66 IKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117
+K+ + +++E+ ++ + HK LGNRW+ IA LPGRTDN IKN+WNS + +K+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 19 TAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDL 78
T EED KL Q + +G K W ++ + + R + CR RW NY+ P ++ S +E+ L
Sbjct: 5 TEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 79 ILRLHKLLGNRWSLIAGRLPGRTDNEIKNYW 109
+ + + G +W+ I+ L R+DN I+N W
Sbjct: 64 LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRP 64
+G WT EEDQ+L + ++ +GPK+W SV AK R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 73 DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLS 114
++++ LI + K RWS+IA L GR + + W++HL+
Sbjct: 9 EEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRP 64
+G WT EEDQ++ + ++ +GPK+W SV AK R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 68 RGNISDQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLS 114
+G + +E+ ++ L + G RWS+IA L GR + + W++HL+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRP 64
+G WT EEDQ++ + ++ +GPK+W SV AK R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRW-SVIAKHLKGRIGKQCRERWHNHLNP 51
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 68 RGNISDQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLS 114
+G + +E+ +++L + G RWS+IA L GR + + W++HL+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 18 WTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRP 64
WT EED+KL + +E +G WK +A NR C+ RW L P
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 18 WTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRP 64
WT EED+KL + +E +G WK +A NR C+ RW L P
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 18 WTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYL 62
WT EED++L + G + WK +A+ NR + C+ RW+ L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVL 54
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 17 AWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNIS 72
W ED+ L A+ +G +W +A+ + K C+ RW +L P IK+ S
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|3HTN|A Chain A, Crystal Structure Of A Putative Dna Binding Protein
(Bt_1116) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.50 A Resolution
pdb|3HTN|B Chain B, Crystal Structure Of A Putative Dna Binding Protein
(Bt_1116) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.50 A Resolution
pdb|3HTN|C Chain C, Crystal Structure Of A Putative Dna Binding Protein
(Bt_1116) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.50 A Resolution
Length = 149
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 69 GNISDQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNEKPSRGS 127
GNIS E + L LH +G + +S +AG L N + S++I + P G
Sbjct: 83 GNISSXNEQVYLHLHITVGRSDYSALAGHLLSAIQNGAGEFVVEDYSERISRTYNPDLGL 142
Query: 128 TAKDLE 133
D E
Sbjct: 143 NIYDFE 148
>pdb|2DIN|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 66
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 67 KRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNEKPSRG 126
K+ S +EE+ +L L KL+ +W IA + GRT + ++ L K +++ PS G
Sbjct: 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDSGPSSG 66
>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+, L-Glutamate And Adp
pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
Length = 692
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 33/119 (27%)
Query: 89 RWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNEKPSRGSTAKDLE---LEISKGEEKGST 145
RW++I+G + RT E ++ + + K G AKD++ LEI K
Sbjct: 313 RWNVISGAVDDRTPKE------RGVAPLLPKYNKNGFGGIAKDVQDKVLEIPKS------ 360
Query: 146 VQKRSGDLEGTFYADGGSKLFSFVGDNKFFD-CYNDE--PLNLEWMSRFFEIDESWFDF 201
+ S DL F+G +KFF+ YND P+N + + R E D++ D+
Sbjct: 361 -RYSSVDL--------------FLGGSKFFNRTYNDTNVPINEKVLGRLLENDKAPLDY 404
>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+ And L-Glutamate
Length = 692
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 33/119 (27%)
Query: 89 RWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNEKPSRGSTAKDLE---LEISKGEEKGST 145
RW++I+G + RT E ++ + + K G AKD++ LEI K
Sbjct: 313 RWNVISGAVDDRTPKE------RGVAPLLPKYNKNGFGGIAKDVQDKVLEIPKS------ 360
Query: 146 VQKRSGDLEGTFYADGGSKLFSFVGDNKFFD-CYNDE--PLNLEWMSRFFEIDESWFDF 201
+ S DL F+G +KFF+ YND P+N + + R E D++ D+
Sbjct: 361 -RYSSVDL--------------FLGGSKFFNRTYNDTNVPINEKVLGRLLENDKAPLDY 404
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 18 WTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIK 67
W A+E+ L A E G W +A G R + CR +YL+ +I+
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR---DHYLKTYIE 58
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
Dnajc2, Northeast Structural Genomics Consortium Target
Hr8254a
Length = 73
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 18 WTAEEDQKLAQAIE---VHGPKKWKSVAAKAGLNRCGKSCRLRW 58
WT EE + L QA++ V+ P++WK + A+A R K C R+
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKI-AEAVPGRTKKDCMKRY 48
>pdb|1PY1|A Chain A, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|B Chain B, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|C Chain C, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
pdb|1PY1|D Chain D, Complex Of Gga1-Vhs Domain And Beta-Secretase C-Terminal
Phosphopeptide
Length = 158
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 29 AIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGN 88
A ++ P++W+++ A L C KSC R+ H + G E + + K LG+
Sbjct: 53 AHKIQSPQEWEAIQALTVLETCMKSCGKRF------HDEVGKFRFLNELIKVVSPKYLGS 106
Query: 89 RWS 91
R S
Sbjct: 107 RTS 109
>pdb|1JWF|A Chain A, Crystal Structure Of Human Gga1 Vhs Domain.
pdb|1JWG|A Chain A, Vhs Domain Of Human Gga1 Complexed With Cation-independent
M6pr C-terminal Peptide
pdb|1JWG|B Chain B, Vhs Domain Of Human Gga1 Complexed With Cation-independent
M6pr C-terminal Peptide
pdb|1UJJ|A Chain A, Vhs Domain Of Human Gga1 Complexed With C-Terminal Peptide
From Bace
pdb|1UJJ|B Chain B, Vhs Domain Of Human Gga1 Complexed With C-Terminal Peptide
From Bace
pdb|1UJK|A Chain A, Vhs Domain Of Human Gga1 Complexed With C-Terminal
Phosphopeptide From Bace
pdb|1UJK|B Chain B, Vhs Domain Of Human Gga1 Complexed With C-Terminal
Phosphopeptide From Bace
Length = 147
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 29 AIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGN 88
A ++ P++W+++ A L C KSC R+ H + G E + + K LG+
Sbjct: 52 AHKIQSPQEWEAIQALTVLETCMKSCGKRF------HDEVGKFRFLNELIKVVSPKYLGS 105
Query: 89 RWS 91
R S
Sbjct: 106 RTS 108
>pdb|3G2S|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Peptide
pdb|3G2S|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Peptide
pdb|3G2T|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Phosphopeptide
pdb|3G2T|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sorla C-Terminal
Phosphopeptide
pdb|3G2U|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Peptide
pdb|3G2U|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Peptide
pdb|3G2V|A Chain A, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Phosphopeptide
pdb|3G2V|B Chain B, Vhs Domain Of Human Gga1 Complexed With Sotilin C-Terminal
Phosphopeptide
pdb|3G2W|A Chain A, Vhs Domain Of Human Gga1 Complexed With A Dxxll Hinge
Peptide
pdb|3G2W|B Chain B, Vhs Domain Of Human Gga1 Complexed With A Dxxll Hinge
Peptide
Length = 149
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 29 AIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGN 88
A ++ P++W+++ A L C KSC R+ H + G E + + K LG+
Sbjct: 54 AHKIQSPQEWEAIQALTVLETCMKSCGKRF------HDEVGKFRFLNELIKVVSPKYLGS 107
Query: 89 RWS 91
R S
Sbjct: 108 RTS 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,751,481
Number of Sequences: 62578
Number of extensions: 285999
Number of successful extensions: 560
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 52
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)