Query 028922
Match_columns 202
No_of_seqs 255 out of 1419
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 07:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 6.3E-37 2.1E-41 227.0 11.2 105 12-117 1-105 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 9.3E-37 3.2E-41 227.1 10.6 105 15-120 1-105 (107)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 3.8E-36 1.3E-40 230.3 11.2 110 7-117 19-128 (128)
4 3zqc_A MYB3; transcription-DNA 100.0 3.2E-36 1.1E-40 231.7 10.1 107 14-121 1-107 (131)
5 3osg_A MYB21; transcription-DN 100.0 6.4E-36 2.2E-40 228.7 11.5 107 7-115 3-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 9.4E-34 3.2E-38 224.3 9.7 109 8-117 51-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 3.2E-33 1.1E-37 221.3 6.3 107 12-119 3-110 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 5.4E-24 1.8E-28 162.7 5.7 78 41-119 1-79 (128)
9 2dim_A Cell division cycle 5-l 99.9 4.9E-24 1.7E-28 146.9 3.9 67 9-76 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 2.8E-20 9.6E-25 154.2 7.5 106 10-116 3-200 (246)
11 2din_A Cell division cycle 5-l 99.8 1.5E-19 5.2E-24 122.9 7.1 62 61-123 2-63 (66)
12 2llk_A Cyclin-D-binding MYB-li 99.8 6.8E-20 2.3E-24 127.0 5.2 58 54-112 9-66 (73)
13 2cu7_A KIAA1915 protein; nucle 99.8 2.1E-19 7.1E-24 124.3 7.3 66 62-127 3-68 (72)
14 2d9a_A B-MYB, MYB-related prot 99.8 4.1E-19 1.4E-23 118.5 5.4 57 10-67 3-59 (60)
15 2juh_A Telomere binding protei 99.8 3E-19 1E-23 134.8 4.8 83 9-92 11-103 (121)
16 2d9a_A B-MYB, MYB-related prot 99.8 6.2E-19 2.1E-23 117.7 5.4 56 63-118 3-59 (60)
17 1gvd_A MYB proto-oncogene prot 99.7 6E-19 2.1E-23 114.5 4.3 52 13-65 1-52 (52)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 9.8E-19 3.4E-23 113.4 3.8 52 13-65 1-52 (52)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 3.2E-18 1.1E-22 111.0 6.1 50 66-115 1-51 (52)
20 2roh_A RTBP1, telomere binding 99.7 4.1E-18 1.4E-22 128.7 6.8 79 10-89 26-114 (122)
21 1gvd_A MYB proto-oncogene prot 99.7 5.4E-18 1.9E-22 109.9 6.4 50 66-115 1-51 (52)
22 2dim_A Cell division cycle 5-l 99.7 3.6E-18 1.2E-22 117.4 5.7 58 63-120 4-62 (70)
23 1ity_A TRF1; helix-turn-helix, 99.7 2.7E-18 9.2E-23 117.7 5.1 64 9-72 4-68 (69)
24 1ity_A TRF1; helix-turn-helix, 99.7 1.1E-17 3.9E-22 114.6 6.4 60 62-121 4-66 (69)
25 1x41_A Transcriptional adaptor 99.7 1E-17 3.4E-22 111.9 4.7 55 10-65 3-57 (60)
26 3sjm_A Telomeric repeat-bindin 99.7 8.2E-18 2.8E-22 113.8 4.1 57 11-67 7-64 (64)
27 1x41_A Transcriptional adaptor 99.7 1.9E-17 6.7E-22 110.5 5.8 53 63-115 3-56 (60)
28 1w0t_A Telomeric repeat bindin 99.7 3.6E-17 1.2E-21 106.5 6.2 49 67-115 1-52 (53)
29 2din_A Cell division cycle 5-l 99.7 1.1E-17 3.6E-22 113.7 2.3 60 8-70 2-61 (66)
30 2yum_A ZZZ3 protein, zinc fing 99.7 5.8E-17 2E-21 112.7 5.7 59 63-121 3-67 (75)
31 3sjm_A Telomeric repeat-bindin 99.7 1E-16 3.4E-21 108.5 5.6 52 66-117 9-63 (64)
32 2yum_A ZZZ3 protein, zinc fing 99.7 4.1E-17 1.4E-21 113.5 3.5 61 9-70 2-67 (75)
33 2elk_A SPCC24B10.08C protein; 99.6 2E-16 7E-21 104.9 6.2 51 63-113 4-56 (58)
34 2elk_A SPCC24B10.08C protein; 99.6 1.3E-16 4.5E-21 105.8 4.8 52 11-62 5-56 (58)
35 1w0t_A Telomeric repeat bindin 99.6 1.8E-16 6.1E-21 103.2 4.0 50 14-63 1-51 (53)
36 2cu7_A KIAA1915 protein; nucle 99.6 1.8E-16 6.2E-21 109.5 3.6 58 9-68 3-60 (72)
37 2ltp_A Nuclear receptor corepr 99.4 4.4E-17 1.5E-21 117.1 0.0 56 61-116 9-64 (89)
38 2llk_A Cyclin-D-binding MYB-li 99.6 1.8E-15 6E-20 104.8 5.1 62 3-68 11-72 (73)
39 3osg_A MYB21; transcription-DN 99.6 4.3E-15 1.5E-19 112.9 6.4 58 63-120 6-63 (126)
40 1gv2_A C-MYB, MYB proto-oncoge 99.5 4.6E-15 1.6E-19 109.1 5.7 55 65-119 1-56 (105)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.5 8.8E-15 3E-19 101.2 5.9 51 64-114 14-68 (73)
42 2yus_A SWI/SNF-related matrix- 99.5 9.7E-15 3.3E-19 102.6 4.9 49 64-112 14-62 (79)
43 3zqc_A MYB3; transcription-DNA 99.5 6.7E-15 2.3E-19 112.5 3.7 84 8-97 47-130 (131)
44 2yus_A SWI/SNF-related matrix- 99.5 1.5E-14 5.2E-19 101.6 5.1 52 8-61 11-62 (79)
45 2k9n_A MYB24; R2R3 domain, DNA 99.5 1.9E-14 6.4E-19 106.4 5.2 52 68-119 1-53 (107)
46 2ckx_A NGTRF1, telomere bindin 99.5 3.7E-14 1.3E-18 100.5 6.4 69 16-85 1-79 (83)
47 2aje_A Telomere repeat-binding 99.5 2.5E-14 8.6E-19 105.4 5.1 78 9-87 7-94 (105)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.5 1.3E-14 4.5E-19 100.4 2.8 55 8-63 11-68 (73)
49 1x58_A Hypothetical protein 49 99.5 1.2E-13 4E-18 92.0 6.5 50 66-115 6-58 (62)
50 2ckx_A NGTRF1, telomere bindin 99.5 1.2E-13 4.1E-18 97.8 6.7 48 69-116 1-53 (83)
51 2ltp_A Nuclear receptor corepr 99.2 6.1E-15 2.1E-19 105.9 0.0 57 6-64 7-63 (89)
52 2aje_A Telomere repeat-binding 99.4 2.4E-13 8.2E-18 100.1 7.5 54 63-116 8-66 (105)
53 2juh_A Telomere binding protei 99.4 4.1E-13 1.4E-17 101.2 7.3 55 62-116 11-70 (121)
54 1ign_A Protein (RAP1); RAP1,ye 99.4 1.9E-13 6.5E-18 113.3 4.9 55 64-118 4-64 (246)
55 2roh_A RTBP1, telomere binding 99.3 1.7E-12 5.7E-17 98.0 7.4 53 64-116 27-84 (122)
56 2cjj_A Radialis; plant develop 99.3 1.1E-12 3.9E-17 94.6 5.7 50 67-116 7-60 (93)
57 2cjj_A Radialis; plant develop 99.2 2.9E-12 9.9E-17 92.5 2.9 48 14-62 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.2 1.6E-11 5.6E-16 81.9 6.2 47 67-113 11-57 (61)
59 3hm5_A DNA methyltransferase 1 99.2 4.2E-11 1.4E-15 86.1 6.9 67 51-121 17-88 (93)
60 2eqr_A N-COR1, N-COR, nuclear 99.0 1.7E-10 5.7E-15 76.9 4.7 49 11-61 8-56 (61)
61 2cqq_A RSGI RUH-037, DNAJ homo 99.0 3.3E-10 1.1E-14 78.0 5.3 50 65-115 5-58 (72)
62 2iw5_B Protein corest, REST co 99.0 5.7E-10 1.9E-14 91.8 7.6 49 67-115 132-180 (235)
63 2xag_B REST corepressor 1; ami 98.9 5.5E-10 1.9E-14 101.2 5.2 46 69-114 381-426 (482)
64 1x58_A Hypothetical protein 49 98.9 5.2E-10 1.8E-14 74.3 2.9 48 14-63 7-57 (62)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.9 8.9E-10 3.1E-14 75.8 3.5 51 11-63 4-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.8 5.6E-09 1.9E-13 71.8 4.1 48 15-63 8-58 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.8 1.3E-08 4.3E-13 70.1 5.7 47 67-113 7-57 (73)
68 1fex_A TRF2-interacting telome 98.7 2E-08 6.8E-13 66.4 5.0 47 68-114 2-58 (59)
69 1fex_A TRF2-interacting telome 98.7 9.1E-09 3.1E-13 68.0 2.6 48 15-63 2-58 (59)
70 2iw5_B Protein corest, REST co 98.7 1.9E-08 6.5E-13 82.7 5.1 49 13-63 131-179 (235)
71 2yqk_A Arginine-glutamic acid 98.6 1.1E-07 3.7E-12 63.6 6.6 49 63-111 4-53 (63)
72 1ofc_X ISWI protein; nuclear p 98.5 4E-07 1.4E-11 78.3 8.8 100 16-116 111-276 (304)
73 4eef_G F-HB80.4, designed hema 98.4 3E-08 1E-12 67.8 -0.1 44 15-59 20-66 (74)
74 2yqk_A Arginine-glutamic acid 98.4 3.5E-07 1.2E-11 61.0 4.2 50 9-60 3-53 (63)
75 4eef_G F-HB80.4, designed hema 98.3 8.7E-08 3E-12 65.5 0.9 44 67-110 19-66 (74)
76 1ug2_A 2610100B20RIK gene prod 98.3 8.2E-07 2.8E-11 62.9 5.1 46 70-115 35-83 (95)
77 4iej_A DNA methyltransferase 1 98.2 2.9E-06 1E-10 60.6 7.0 62 56-121 22-88 (93)
78 2crg_A Metastasis associated p 98.2 2.1E-06 7.3E-11 58.4 5.9 43 68-110 8-51 (70)
79 4a69_C Nuclear receptor corepr 98.2 2.2E-06 7.6E-11 61.6 6.0 44 68-111 43-86 (94)
80 2lr8_A CAsp8-associated protei 97.5 2E-07 6.7E-12 62.6 0.0 44 70-114 16-62 (70)
81 2xag_B REST corepressor 1; ami 98.0 6E-06 2.1E-10 74.9 5.0 47 13-61 378-424 (482)
82 2crg_A Metastasis associated p 97.9 8.9E-06 3E-10 55.3 3.3 45 14-60 7-52 (70)
83 4a69_C Nuclear receptor corepr 97.8 1.1E-05 3.8E-10 57.9 3.4 44 15-60 43-86 (94)
84 3hm5_A DNA methyltransferase 1 97.7 2.8E-05 9.4E-10 55.7 3.4 50 13-63 28-81 (93)
85 4b4c_A Chromodomain-helicase-D 97.6 0.0001 3.5E-09 59.6 6.2 102 12-114 4-195 (211)
86 2y9y_A Imitation switch protei 97.4 0.00056 1.9E-08 60.1 9.0 104 16-119 124-295 (374)
87 1ug2_A 2610100B20RIK gene prod 97.4 8.5E-05 2.9E-09 52.6 2.9 45 16-61 34-80 (95)
88 2ebi_A DNA binding protein GT- 97.4 0.00014 4.8E-09 50.9 3.8 48 68-115 4-65 (86)
89 2ebi_A DNA binding protein GT- 97.3 5.4E-05 1.8E-09 53.1 1.2 49 14-62 3-63 (86)
90 2lr8_A CAsp8-associated protei 96.1 9.3E-05 3.2E-09 49.6 0.0 45 16-62 15-61 (70)
91 1irz_A ARR10-B; helix-turn-hel 96.5 0.0068 2.3E-07 40.2 6.0 47 67-113 6-57 (64)
92 4iej_A DNA methyltransferase 1 95.4 0.012 4.1E-07 41.9 3.5 49 13-62 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 95.3 0.036 1.2E-06 47.5 6.6 46 68-113 110-156 (304)
94 1irz_A ARR10-B; helix-turn-hel 94.6 0.056 1.9E-06 35.7 4.8 49 13-61 5-56 (64)
95 4b4c_A Chromodomain-helicase-D 94.5 0.052 1.8E-06 43.4 5.4 31 14-44 133-163 (211)
96 2xb0_X Chromo domain-containin 92.2 0.11 3.6E-06 43.9 3.7 26 70-95 170-196 (270)
97 2xb0_X Chromo domain-containin 91.0 0.17 6E-06 42.5 3.8 29 16-44 169-197 (270)
98 2y9y_A Imitation switch protei 78.3 4.1 0.00014 35.6 6.2 48 68-116 123-172 (374)
99 2li6_A SWI/SNF chromatin-remod 77.6 1.8 6.3E-05 31.4 3.3 38 78-115 53-98 (116)
100 3cz6_A DNA-binding protein RAP 75.8 2.8 9.4E-05 32.6 3.9 31 10-43 109-147 (168)
101 2jrz_A Histone demethylase jar 75.7 4.1 0.00014 29.5 4.7 38 78-115 44-93 (117)
102 2lm1_A Lysine-specific demethy 75.2 4.8 0.00016 28.5 4.9 39 78-116 48-98 (107)
103 2eqy_A RBP2 like, jumonji, at 71.8 5.8 0.0002 28.9 4.8 39 78-116 46-96 (122)
104 2cxy_A BAF250B subunit, HBAF25 71.2 5.9 0.0002 29.0 4.7 39 78-116 55-105 (125)
105 2rq5_A Protein jumonji; develo 70.9 5.6 0.00019 29.1 4.5 39 78-116 46-97 (121)
106 1kkx_A Transcription regulator 69.7 2.9 9.9E-05 30.7 2.7 39 78-116 52-98 (123)
107 1c20_A DEAD ringer protein; DN 69.6 6.9 0.00023 28.7 4.8 39 78-116 56-107 (128)
108 2rq5_A Protein jumonji; develo 69.5 3.1 0.00011 30.5 2.8 46 36-84 64-113 (121)
109 2o8x_A Probable RNA polymerase 67.9 7 0.00024 24.4 4.1 43 71-115 16-58 (70)
110 2li6_A SWI/SNF chromatin-remod 67.6 3.1 0.00011 30.1 2.5 39 25-64 53-98 (116)
111 2kk0_A AT-rich interactive dom 67.3 7.5 0.00026 29.2 4.7 39 78-116 68-119 (145)
112 1ku3_A Sigma factor SIGA; heli 64.9 8.7 0.0003 24.6 4.1 43 71-115 11-57 (73)
113 2jxj_A Histone demethylase jar 63.5 4.2 0.00015 28.2 2.4 38 78-115 40-89 (96)
114 1ig6_A MRF-2, modulator recogn 60.1 6 0.0002 28.0 2.8 41 24-64 36-87 (107)
115 2p7v_B Sigma-70, RNA polymeras 58.1 10 0.00034 23.9 3.4 29 86-115 24-52 (68)
116 1ig6_A MRF-2, modulator recogn 56.9 5 0.00017 28.4 1.9 38 78-115 37-87 (107)
117 2jrz_A Histone demethylase jar 56.4 5.2 0.00018 28.9 1.9 40 25-64 44-93 (117)
118 2p1m_A SKP1-like protein 1A; F 55.5 7.3 0.00025 29.5 2.7 36 39-82 119-154 (160)
119 1c20_A DEAD ringer protein; DN 54.7 5.5 0.00019 29.2 1.8 40 25-64 56-106 (128)
120 3hug_A RNA polymerase sigma fa 50.0 20 0.00069 23.9 4.1 39 75-114 41-79 (92)
121 1umq_A Photosynthetic apparatu 49.5 22 0.00074 24.0 4.1 33 17-50 37-69 (81)
122 3i4p_A Transcriptional regulat 49.1 7.7 0.00026 29.1 1.9 43 21-65 3-45 (162)
123 2eqy_A RBP2 like, jumonji, at 48.2 9 0.00031 27.9 2.1 39 25-63 46-94 (122)
124 1x3u_A Transcriptional regulat 46.5 33 0.0011 21.7 4.6 42 71-115 17-58 (79)
125 3v7d_A Suppressor of kinetocho 45.8 11 0.00038 28.9 2.4 35 38-80 126-160 (169)
126 2kk0_A AT-rich interactive dom 44.0 24 0.00082 26.4 4.0 54 25-78 68-134 (145)
127 1tty_A Sigma-A, RNA polymerase 42.8 31 0.0011 22.8 4.1 29 86-115 37-65 (87)
128 3c57_A Two component transcrip 42.0 41 0.0014 22.7 4.7 43 70-115 27-69 (95)
129 2ast_A S-phase kinase-associat 40.8 13 0.00045 27.9 2.0 35 39-81 120-154 (159)
130 3ulq_B Transcriptional regulat 40.6 55 0.0019 22.0 5.1 46 67-115 26-71 (90)
131 1or7_A Sigma-24, RNA polymeras 40.5 40 0.0014 25.0 4.8 29 86-115 155-183 (194)
132 2yqf_A Ankyrin-1; death domain 39.7 44 0.0015 23.4 4.7 34 72-106 14-47 (111)
133 1fse_A GERE; helix-turn-helix 38.2 47 0.0016 20.5 4.3 43 69-114 10-52 (74)
134 1je8_A Nitrate/nitrite respons 38.2 45 0.0015 21.7 4.3 43 70-115 21-63 (82)
135 1xsv_A Hypothetical UPF0122 pr 37.3 53 0.0018 23.0 4.8 37 76-113 30-66 (113)
136 2q1z_A RPOE, ECF SIGE; ECF sig 37.3 25 0.00085 25.9 3.2 30 85-115 149-178 (184)
137 3e7l_A Transcriptional regulat 35.3 59 0.002 20.1 4.3 33 74-107 19-51 (63)
138 3i4p_A Transcriptional regulat 35.0 34 0.0012 25.4 3.6 45 74-119 3-48 (162)
139 2o71_A Death domain-containing 34.1 47 0.0016 23.8 4.1 35 68-106 19-53 (115)
140 2of5_H Leucine-rich repeat and 33.5 42 0.0014 23.9 3.7 29 77-106 14-42 (118)
141 2of5_A Death domain-containing 33.2 45 0.0015 23.8 3.8 38 65-106 16-53 (114)
142 2jpc_A SSRB; DNA binding prote 33.2 69 0.0024 19.0 4.3 37 77-115 4-40 (61)
143 2e1c_A Putative HTH-type trans 31.9 32 0.0011 26.0 3.0 43 20-64 26-68 (171)
144 3mzy_A RNA polymerase sigma-H 31.6 50 0.0017 23.4 4.0 28 85-113 122-149 (164)
145 1rp3_A RNA polymerase sigma fa 30.9 65 0.0022 24.5 4.8 34 80-114 196-229 (239)
146 1ntc_A Protein (nitrogen regul 30.8 80 0.0027 21.1 4.7 35 73-108 50-84 (91)
147 2rnj_A Response regulator prot 29.3 54 0.0018 21.7 3.5 43 70-115 29-71 (91)
148 1wxp_A THO complex subunit 1; 27.9 80 0.0027 22.0 4.4 29 77-106 19-47 (110)
149 2dbb_A Putative HTH-type trans 27.2 1.2E+02 0.004 21.7 5.4 44 74-118 9-53 (151)
150 4ayb_F DNA-directed RNA polyme 27.1 1.2E+02 0.004 21.6 5.1 64 16-86 45-110 (113)
151 1s7o_A Hypothetical UPF0122 pr 26.8 89 0.0031 21.9 4.5 41 71-113 23-63 (113)
152 1p4w_A RCSB; solution structur 26.2 1.5E+02 0.005 20.2 5.4 45 68-115 32-76 (99)
153 1tc3_C Protein (TC3 transposas 25.5 89 0.003 17.0 4.7 38 70-109 5-42 (51)
154 2e1c_A Putative HTH-type trans 24.8 91 0.0031 23.4 4.5 45 73-118 26-71 (171)
155 1k78_A Paired box protein PAX5 24.8 1.6E+02 0.0055 20.8 5.7 38 68-107 30-67 (149)
156 3eyi_A Z-DNA-binding protein 1 24.3 68 0.0023 21.2 3.1 38 18-56 7-44 (72)
157 2jvw_A Uncharacterized protein 24.1 71 0.0024 21.9 3.2 45 23-80 18-69 (88)
158 3k6g_A Telomeric repeat-bindin 23.2 1.7E+02 0.0057 20.8 5.1 63 23-88 14-86 (111)
159 2cyy_A Putative HTH-type trans 22.3 1.2E+02 0.0043 21.7 4.7 44 74-118 7-51 (151)
160 2cyy_A Putative HTH-type trans 22.1 51 0.0017 23.9 2.4 39 21-61 7-45 (151)
161 1umq_A Photosynthetic apparatu 21.4 1.1E+02 0.0036 20.4 3.8 35 72-107 39-73 (81)
162 2dbb_A Putative HTH-type trans 20.5 48 0.0016 24.0 2.0 39 21-61 9-47 (151)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=6.3e-37 Score=227.00 Aligned_cols=105 Identities=47% Similarity=0.897 Sum_probs=99.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHhCCChH
Q 028922 12 EANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGNRWS 91 (202)
Q Consensus 12 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~ 91 (202)
.+++|+||+|||++|+.+|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 36899999999999999999999889999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHhhhHHH
Q 028922 92 LIAGRLPGRTDNEIKNYWNSHLSKKI 117 (202)
Q Consensus 92 ~Ia~~l~gRT~~q~k~rw~~~l~~~~ 117 (202)
.||..|||||++||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999988753
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=9.3e-37 Score=227.14 Aligned_cols=105 Identities=30% Similarity=0.532 Sum_probs=100.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHHh
Q 028922 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGNRWSLIA 94 (202)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia 94 (202)
||+||+|||++|+.+|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|+.+|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhHHHhhc
Q 028922 95 GRLPGRTDNEIKNYWNSHLSKKIKQN 120 (202)
Q Consensus 95 ~~l~gRT~~q~k~rw~~~l~~~~~~~ 120 (202)
..|||||++||++||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999988765543
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=3.8e-36 Score=230.34 Aligned_cols=110 Identities=45% Similarity=0.881 Sum_probs=102.9
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHh
Q 028922 7 QCTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLL 86 (202)
Q Consensus 7 ~~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~ 86 (202)
....|.+++|+||+|||++|+.+|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|+++|.+|
T Consensus 19 ~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 97 (128)
T 1h8a_C 19 KVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 97 (128)
T ss_dssp ---CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHH
T ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999889999999999 999999999999999999999999999999999999999
Q ss_pred CCChHHHhccCCCCCHHHHHHHHHHhhhHHH
Q 028922 87 GNRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117 (202)
Q Consensus 87 G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~ 117 (202)
|++|+.||..|||||++||++||+.++++++
T Consensus 98 G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 98 GNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999987653
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=3.2e-36 Score=231.75 Aligned_cols=107 Identities=39% Similarity=0.746 Sum_probs=103.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHH
Q 028922 14 NRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGNRWSLI 93 (202)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~I 93 (202)
.||+||+|||++|+.+|..||..+|..||..|+ +||+.||++||.++|+|.+++|+||+|||.+|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 379999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHhhhHHHhhcC
Q 028922 94 AGRLPGRTDNEIKNYWNSHLSKKIKQNE 121 (202)
Q Consensus 94 a~~l~gRT~~q~k~rw~~~l~~~~~~~~ 121 (202)
|..|||||++||++||++++++.+....
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999876654
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=6.4e-36 Score=228.68 Aligned_cols=107 Identities=39% Similarity=0.696 Sum_probs=101.4
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHh
Q 028922 7 QCTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLL 86 (202)
Q Consensus 7 ~~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~ 86 (202)
++.++..+||+||+|||++|+.+|..||. +|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+|
T Consensus 3 q~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 3 QVNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY 80 (126)
T ss_dssp CBC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence 34567889999999999999999999995 9999999999 999999999999999999999999999999999999999
Q ss_pred CCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 87 GNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 87 G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
|++|+.||..|||||+.||++||+.++++
T Consensus 81 G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 81 GRQWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CSCHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987765
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=9.4e-34 Score=224.35 Aligned_cols=109 Identities=45% Similarity=0.861 Sum_probs=103.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 028922 8 CTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLG 87 (202)
Q Consensus 8 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G 87 (202)
...|.+++|+||+|||++|+.+|..||..+|..||..|+ +||+.||+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 457899999999999999999999999889999999999 9999999999999999999999999999999999999999
Q ss_pred CChHHHhccCCCCCHHHHHHHHHHhhhHHH
Q 028922 88 NRWSLIAGRLPGRTDNEIKNYWNSHLSKKI 117 (202)
Q Consensus 88 ~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~ 117 (202)
++|+.||..|||||+++|++||+.++++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999987753
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.98 E-value=3.2e-33 Score=221.31 Aligned_cols=107 Identities=33% Similarity=0.714 Sum_probs=63.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 028922 12 EANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGN-RW 90 (202)
Q Consensus 12 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G~-~W 90 (202)
++++++||+|||++|+++|..||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+.+|..||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 36799999999999999999999889999999999 99999999999999999999999999999999999999996 69
Q ss_pred HHHhccCCCCCHHHHHHHHHHhhhHHHhh
Q 028922 91 SLIAGRLPGRTDNEIKNYWNSHLSKKIKQ 119 (202)
Q Consensus 91 ~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~ 119 (202)
..||..|||||+.||++||.++|.+.+++
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 110 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKK 110 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccc
Confidence 99999999999999999999999876543
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.89 E-value=5.4e-24 Score=162.66 Aligned_cols=78 Identities=29% Similarity=0.643 Sum_probs=53.8
Q ss_pred HhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHhhhHHHhh
Q 028922 41 VAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGN-RWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQ 119 (202)
Q Consensus 41 Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~ 119 (202)
||+.|+ |||+.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.||++||.++|.+.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788999 99999999999999999999999999999999999999995 6999999999999999999999999886644
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=4.9e-24 Score=146.92 Aligned_cols=67 Identities=27% Similarity=0.606 Sum_probs=64.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHH
Q 028922 9 TKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEE 76 (202)
Q Consensus 9 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd 76 (202)
..|.+++|+||+|||++|+.+|.+||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 45788999999999999999999999889999999999 99999999999999999999999999997
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.81 E-value=2.8e-20 Score=154.15 Aligned_cols=106 Identities=18% Similarity=0.290 Sum_probs=91.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhHHhhhhccCcCccccchhhhccccCCCC-----------------
Q 028922 10 KKEANRGAWTAEEDQKLAQAIEVHGPKK-----WKSVAAKAGLNRCGKSCRLRWMNYLRPHIK----------------- 67 (202)
Q Consensus 10 ~~~~~kg~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~----------------- 67 (202)
.+.++|++||+|||+.|+++|.++|..+ |..||+.|+ |||+.||+.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 4668899999999999999999998432 999999999 99999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 028922 68 ------------RGNISDQEEDLILRLHKL-L--------------------------------GN-------------- 88 (202)
Q Consensus 68 ------------k~~WT~eEd~~Ll~~v~~-~--------------------------------G~-------------- 88 (202)
+..||.+||-.|+..+++ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 889999999999999987 1 11
Q ss_pred -----------ChHHHhccCCCCCHHHHHHHHHHhhhHH
Q 028922 89 -----------RWSLIAGRLPGRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 89 -----------~W~~Ia~~l~gRT~~q~k~rw~~~l~~~ 116 (202)
.|..||+.+|+||..++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999888654
No 11
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=122.91 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=58.7
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhHHHhhcCCC
Q 028922 61 YLRPHIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNEKP 123 (202)
Q Consensus 61 ~L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~~~~~ 123 (202)
+|+|.+++++||.|||++|+++|+.||.+|..||. ++|||+.||++||+.+|++.+++....
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 79999999999999999999999999999999999 889999999999999999999887543
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-20 Score=127.01 Aligned_cols=58 Identities=19% Similarity=0.302 Sum_probs=46.8
Q ss_pred cchhhhccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHh
Q 028922 54 CRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSH 112 (202)
Q Consensus 54 cr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~ 112 (202)
.--||.++|+|.+++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 99999999999864
No 13
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.79 E-value=2.1e-19 Score=124.34 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=59.6
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhHHHhhcCCCCCCC
Q 028922 62 LRPHIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNEKPSRGS 127 (202)
Q Consensus 62 L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~~~~~~~~~ 127 (202)
++|.+++++||+|||++|+++|.+||++|..||.+|||||++||++||+.++++.++.+..+...+
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 578999999999999999999999999999999999999999999999999999887755444433
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.1e-19 Score=118.54 Aligned_cols=57 Identities=28% Similarity=0.601 Sum_probs=54.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCC
Q 028922 10 KKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIK 67 (202)
Q Consensus 10 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~ 67 (202)
.|.+++++||+|||++|+++|.+||..+|..||..|+ +||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4788999999999999999999999889999999999 99999999999999999875
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.76 E-value=3e-19 Score=134.79 Aligned_cols=83 Identities=20% Similarity=0.399 Sum_probs=77.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhh----ccCcCccccchhhhcccc-----CCCCCC-CCCHHHHHH
Q 028922 9 TKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKA----GLNRCGKSCRLRWMNYLR-----PHIKRG-NISDQEEDL 78 (202)
Q Consensus 9 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~~Rt~~qcr~Rw~~~L~-----p~~~k~-~WT~eEd~~ 78 (202)
..+..+|++||+|||+.|+.+|++||.++|..|+..+ + +||..||++||++++. |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 4567889999999999999999999977999999986 6 9999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCChHH
Q 028922 79 ILRLHKLLGNRWSL 92 (202)
Q Consensus 79 Ll~~v~~~G~~W~~ 92 (202)
|+.++..||++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999977
No 16
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=6.2e-19 Score=117.67 Aligned_cols=56 Identities=21% Similarity=0.432 Sum_probs=52.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHhhhHHHh
Q 028922 63 RPHIKRGNISDQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIK 118 (202)
Q Consensus 63 ~p~~~k~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~ 118 (202)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999988654
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.75 E-value=6e-19 Score=114.46 Aligned_cols=52 Identities=44% Similarity=0.892 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCC
Q 028922 13 ANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPH 65 (202)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~ 65 (202)
++||+||+|||++|+++|.+||..+|..||..|+ +||+.||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999778999999999 999999999999999984
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.74 E-value=9.8e-19 Score=113.39 Aligned_cols=52 Identities=37% Similarity=0.740 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCC
Q 028922 13 ANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPH 65 (202)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~ 65 (202)
+++|+||+|||++|+++|..||..+|..||+.|+ +||+.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999779999999999 999999999999999984
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.74 E-value=3.2e-18 Score=110.98 Aligned_cols=50 Identities=26% Similarity=0.547 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 66 IKRGNISDQEEDLILRLHKLLGN-RWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 66 ~~k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
+++++||+|||.+|+++|.+||. +|..||..|||||+.||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 899999999999999999999999976
No 20
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.73 E-value=4.1e-18 Score=128.73 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=72.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhh----ccCcCccccchhhhccc-----cCCCCCCCCCHHH-HHHH
Q 028922 10 KKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKA----GLNRCGKSCRLRWMNYL-----RPHIKRGNISDQE-EDLI 79 (202)
Q Consensus 10 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~~Rt~~qcr~Rw~~~L-----~p~~~k~~WT~eE-d~~L 79 (202)
.+..++++||+|||+.|+++|++||.++|..|+..+ + +||..||++||++++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 345678999999999999999999988999999975 5 999999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCC
Q 028922 80 LRLHKLLGNR 89 (202)
Q Consensus 80 l~~v~~~G~~ 89 (202)
+.++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.73 E-value=5.4e-18 Score=109.91 Aligned_cols=50 Identities=30% Similarity=0.695 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 66 IKRGNISDQEEDLILRLHKLLGN-RWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 66 ~~k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999999876
No 22
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=117.36 Aligned_cols=58 Identities=26% Similarity=0.410 Sum_probs=54.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHhhhHHHhhc
Q 028922 63 RPHIKRGNISDQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQN 120 (202)
Q Consensus 63 ~p~~~k~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~~ 120 (202)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|++.++++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~ 62 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKT 62 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCC
Confidence 5778999999999999999999999 799999999999999999999999999987765
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.73 E-value=2.7e-18 Score=117.72 Aligned_cols=64 Identities=20% Similarity=0.405 Sum_probs=59.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhcc-CcCccccchhhhccccCCCCCCCCC
Q 028922 9 TKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGL-NRCGKSCRLRWMNYLRPHIKRGNIS 72 (202)
Q Consensus 9 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-~Rt~~qcr~Rw~~~L~p~~~k~~WT 72 (202)
.++..++++||+|||++|+.+|++||.++|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 457788999999999999999999998899999999975 8999999999999999999988764
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.71 E-value=1.1e-17 Score=114.56 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=54.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHhhhHHHhhcC
Q 028922 62 LRPHIKRGNISDQEEDLILRLHKLLG-NRWSLIAGRLP--GRTDNEIKNYWNSHLSKKIKQNE 121 (202)
Q Consensus 62 L~p~~~k~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~q~k~rw~~~l~~~~~~~~ 121 (202)
.++..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++|++.+.+..
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 45677899999999999999999999 69999999999 99999999999999999876653
No 25
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1e-17 Score=111.89 Aligned_cols=55 Identities=24% Similarity=0.497 Sum_probs=51.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCC
Q 028922 10 KKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPH 65 (202)
Q Consensus 10 ~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~ 65 (202)
.+.+.+++||+|||++|+++|..||..+|..||+.|+ +||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 3678999999999999999999999889999999999 999999999999999865
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.70 E-value=8.2e-18 Score=113.82 Aligned_cols=57 Identities=19% Similarity=0.423 Sum_probs=49.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhc-cCcCccccchhhhccccCCCC
Q 028922 11 KEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAG-LNRCGKSCRLRWMNYLRPHIK 67 (202)
Q Consensus 11 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~~Rt~~qcr~Rw~~~L~p~~~ 67 (202)
...+|++||+|||++|+++|++||..+|..||+.++ .+||+.||++||.+++.|+++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 445789999999999999999999889999999864 389999999999999998764
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.9e-17 Score=110.49 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=49.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 63 RPHIKRGNISDQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 63 ~p~~~k~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.+.+.+++||+|||++|+++|.+|| ++|..||..|||||+.||++||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999998864
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.69 E-value=3.6e-17 Score=106.50 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHhhhH
Q 028922 67 KRGNISDQEEDLILRLHKLLG-NRWSLIAGRLP--GRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 67 ~k~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~q~k~rw~~~l~~ 115 (202)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998864
No 29
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-17 Score=113.75 Aligned_cols=60 Identities=18% Similarity=0.423 Sum_probs=54.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCC
Q 028922 8 CTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGN 70 (202)
Q Consensus 8 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~ 70 (202)
...|.+++++||+|||++|+.+|+.+| .+|..||+ ++ |||+.||+.||.++|+|.+++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 367899999999999999999999999 59999999 77 89999999999999998876653
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.8e-17 Score=112.68 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=54.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CChHHHhccCCCCCHHHHHHHHHHhhhHHHhhcC
Q 028922 63 RPHIKRGNISDQEEDLILRLHKLLG------NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQNE 121 (202)
Q Consensus 63 ~p~~~k~~WT~eEd~~Ll~~v~~~G------~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~~~ 121 (202)
+|.+.+++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999999999 6899999999999999999999999988776553
No 31
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.66 E-value=1e-16 Score=108.45 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC--CCCHHHHHHHHHHhhhHHH
Q 028922 66 IKRGNISDQEEDLILRLHKLLG-NRWSLIAGRLP--GRTDNEIKNYWNSHLSKKI 117 (202)
Q Consensus 66 ~~k~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~q~k~rw~~~l~~~~ 117 (202)
.++++||+|||++|+++|.+|| ++|..||..++ |||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 58999999865 9999999999999987654
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-17 Score=113.48 Aligned_cols=61 Identities=28% Similarity=0.488 Sum_probs=56.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-----CChhHHhhhhccCcCccccchhhhccccCCCCCCC
Q 028922 9 TKKEANRGAWTAEEDQKLAQAIEVHGP-----KKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGN 70 (202)
Q Consensus 9 ~~~~~~kg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~ 70 (202)
.+|.++++.||+|||++|+++|..||. .+|..||+.|+ +||+.||+.||+++|.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 368899999999999999999999996 78999999999 99999999999999998777664
No 33
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.65 E-value=2e-16 Score=104.85 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=47.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhccCC-CCCHHHHHHHHHHhh
Q 028922 63 RPHIKRGNISDQEEDLILRLHKLLG-NRWSLIAGRLP-GRTDNEIKNYWNSHL 113 (202)
Q Consensus 63 ~p~~~k~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~~l~-gRT~~q~k~rw~~~l 113 (202)
+..+.+++||++||.+|+++|.+|| ++|..||.+|+ |||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999 89999999999 999999999999875
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.64 E-value=1.3e-16 Score=105.78 Aligned_cols=52 Identities=25% Similarity=0.463 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccc
Q 028922 11 KEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYL 62 (202)
Q Consensus 11 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L 62 (202)
..+.+++||++||++|+++|++||..+|..||+.|+.+||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3466899999999999999999999999999999987899999999999875
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.62 E-value=1.8e-16 Score=103.17 Aligned_cols=50 Identities=26% Similarity=0.500 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhcc-CcCccccchhhhcccc
Q 028922 14 NRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGL-NRCGKSCRLRWMNYLR 63 (202)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-~Rt~~qcr~Rw~~~L~ 63 (202)
+||+||+|||++|+.+|+.||.++|..||..++. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998899999999975 6999999999999874
No 36
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.62 E-value=1.8e-16 Score=109.47 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=53.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCC
Q 028922 9 TKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKR 68 (202)
Q Consensus 9 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k 68 (202)
..|.+++++||+|||++|+++|..|| .+|..||..|+ +||+.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999 59999999999 999999999999998876655
No 37
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=4.4e-17 Score=117.08 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=52.8
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhHH
Q 028922 61 YLRPHIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 61 ~L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~ 116 (202)
.+.|.+++++||.|||.+|+++|..||++|..||..|||||++||++||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999988764
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-15 Score=104.75 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=48.1
Q ss_pred CCCCcccCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCC
Q 028922 3 TVSSQCTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKR 68 (202)
Q Consensus 3 ~~~~~~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k 68 (202)
++......|.+++|+||+|||++|+++|++|| .+|..||+.| |||+.||+.||.. |....+.
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 55566789999999999999999999999999 5699999999 7999999999984 5444443
No 39
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.56 E-value=4.3e-15 Score=112.94 Aligned_cols=58 Identities=21% Similarity=0.512 Sum_probs=53.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhHHHhhc
Q 028922 63 RPHIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQN 120 (202)
Q Consensus 63 ~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~~ 120 (202)
.+..++++||+|||++|+++|..||.+|..||..|||||+.||+.||.++|.+.++++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~ 63 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHT 63 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccc
Confidence 4568899999999999999999999999999999999999999999999998876554
No 40
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.55 E-value=4.6e-15 Score=109.10 Aligned_cols=55 Identities=29% Similarity=0.691 Sum_probs=50.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHhhhHHHhh
Q 028922 65 HIKRGNISDQEEDLILRLHKLLGN-RWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQ 119 (202)
Q Consensus 65 ~~~k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~ 119 (202)
.+++++||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.+++
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 56 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 56 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccc
Confidence 368999999999999999999996 6999999999999999999999999876543
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.53 E-value=8.8e-15 Score=101.24 Aligned_cols=51 Identities=12% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHhhh
Q 028922 64 PHIKRGNISDQEEDLILRLHKLLG----NRWSLIAGRLPGRTDNEIKNYWNSHLS 114 (202)
Q Consensus 64 p~~~k~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~q~k~rw~~~l~ 114 (202)
+...+++||.+||.+|+.++..|| ++|.+||.+|||||+.||++||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 679999999999999999999998764
No 42
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.51 E-value=9.7e-15 Score=102.59 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHh
Q 028922 64 PHIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSH 112 (202)
Q Consensus 64 p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~ 112 (202)
....+++||+|||.+|+++|.+||++|..||.+|++||+.||++||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3456889999999999999999999999999999999999999999866
No 43
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.50 E-value=6.7e-15 Score=112.52 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=62.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 028922 8 CTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLG 87 (202)
Q Consensus 8 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G 87 (202)
...|.+++|+||+|||++|+.+|..|| .+|..||..|+ |||+.||+.||.++|++.+..++|+.+--. .....+
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~----p~~~kk 120 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEILL----PDRSKK 120 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCCC----CCCC--
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccccC----chhhhh
Confidence 457899999999999999999999999 78999999999 999999999999999999999998765310 011123
Q ss_pred CChHHHhccC
Q 028922 88 NRWSLIAGRL 97 (202)
Q Consensus 88 ~~W~~Ia~~l 97 (202)
.+|..|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 4577777654
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.50 E-value=1.5e-14 Score=101.56 Aligned_cols=52 Identities=25% Similarity=0.530 Sum_probs=48.3
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhcc
Q 028922 8 CTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNY 61 (202)
Q Consensus 8 ~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 61 (202)
+.+....+++||+|||++|+++|++|| .+|..||++|+ +||+.||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 345667789999999999999999999 99999999999 99999999999998
No 45
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.49 E-value=1.9e-14 Score=106.41 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHhhhHHHhh
Q 028922 68 RGNISDQEEDLILRLHKLLGN-RWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQ 119 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~ 119 (202)
+++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.+++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~ 53 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRT 53 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccc
Confidence 589999999999999999995 7999999999999999999999999887654
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.49 E-value=3.7e-14 Score=100.45 Aligned_cols=69 Identities=23% Similarity=0.476 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhhh----hccCcCccccchhhhccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 028922 16 GAWTAEEDQKLAQAIEVHGPKKWKSVAAK----AGLNRCGKSCRLRWMNYL-----RPHIKRG-NISDQEEDLILRLHKL 85 (202)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----l~~~Rt~~qcr~Rw~~~L-----~p~~~k~-~WT~eEd~~Ll~~v~~ 85 (202)
++||+|||+.|+.+|++||.++|..|++. ++ +||+.||++||++++ +|.++++ +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999998899999996 77 999999999999988 6766665 6777777888888764
No 47
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.48 E-value=2.5e-14 Score=105.41 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=67.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhh----ccCcCccccchhhhccc-----cCCCCCCCCCHHHHHH-
Q 028922 9 TKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKA----GLNRCGKSCRLRWMNYL-----RPHIKRGNISDQEEDL- 78 (202)
Q Consensus 9 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~~Rt~~qcr~Rw~~~L-----~p~~~k~~WT~eEd~~- 78 (202)
..+..++++||+|||+.|+.+|++||..+|..|+..+ + +||..+|++||++++ +|.+++|.=++.|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 4567789999999999999999999988999999965 5 999999999999998 6899999888877665
Q ss_pred HHHHHHHhC
Q 028922 79 ILRLHKLLG 87 (202)
Q Consensus 79 Ll~~v~~~G 87 (202)
++++...+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788877755
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.47 E-value=1.3e-14 Score=100.39 Aligned_cols=55 Identities=15% Similarity=0.338 Sum_probs=49.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhC---CCChhHHhhhhccCcCccccchhhhcccc
Q 028922 8 CTKKEANRGAWTAEEDQKLAQAIEVHG---PKKWKSVAAKAGLNRCGKSCRLRWMNYLR 63 (202)
Q Consensus 8 ~~~~~~~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 63 (202)
..++.+.+++||++||++|+.+|+.|| +.+|..||++|| |||+.||+.||..++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456778999999999999999999998 468999999999 9999999999998764
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=1.2e-13 Score=91.98 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCChHHHh---ccCCCCCHHHHHHHHHHhhhH
Q 028922 66 IKRGNISDQEEDLILRLHKLLGNRWSLIA---GRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 66 ~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia---~~l~gRT~~q~k~rw~~~l~~ 115 (202)
-++.+||+|||+.|+++|++||.+|..|+ .++++||...+++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36889999999999999999999999999 678999999999999987654
No 50
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.45 E-value=1.2e-13 Score=97.81 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHhhhHH
Q 028922 69 GNISDQEEDLILRLHKLLGN-RWSLIAGR----LPGRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 69 ~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~q~k~rw~~~l~~~ 116 (202)
.+||.|||+.|+++|.+||. +|+.|+.. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999996 99999986 89999999999999998654
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.18 E-value=6.1e-15 Score=105.87 Aligned_cols=57 Identities=21% Similarity=0.485 Sum_probs=52.4
Q ss_pred CcccCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccC
Q 028922 6 SQCTKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRP 64 (202)
Q Consensus 6 ~~~~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p 64 (202)
.....|.+++|+||+|||++|+.+|..|| .+|..||..|+ |||+.||+.||.++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 44567899999999999999999999999 58999999999 99999999999998764
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.43 E-value=2.4e-13 Score=100.15 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=47.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhccC----CCCCHHHHHHHHHHhhhHH
Q 028922 63 RPHIKRGNISDQEEDLILRLHKLLGN-RWSLIAGRL----PGRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 63 ~p~~~k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l----~gRT~~q~k~rw~~~l~~~ 116 (202)
.+..++++||.|||+.|+++|.+||. +|+.|+..+ +|||+.+|++||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34568999999999999999999996 999999965 8999999999999998643
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.41 E-value=4.1e-13 Score=101.21 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=50.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHhhhHH
Q 028922 62 LRPHIKRGNISDQEEDLILRLHKLLGN-RWSLIAGR----LPGRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 62 L~p~~~k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~q~k~rw~~~l~~~ 116 (202)
+.+..++++||.|||+.|+++|.+||. +|+.|+.. |+|||+.+|++||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 456778999999999999999999996 99999998 49999999999999999743
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.39 E-value=1.9e-13 Score=113.30 Aligned_cols=55 Identities=25% Similarity=0.500 Sum_probs=48.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------hHHHhccCCCCCHHHHHHHHHHhhhHHHh
Q 028922 64 PHIKRGNISDQEEDLILRLHKLLGNR------WSLIAGRLPGRTDNEIKNYWNSHLSKKIK 118 (202)
Q Consensus 64 p~~~k~~WT~eEd~~Ll~~v~~~G~~------W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~ 118 (202)
+.+++++||+|||++|+++|++||++ |..||+.|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45789999999999999999999975 99999999999999999999999999865
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.35 E-value=1.7e-12 Score=97.96 Aligned_cols=53 Identities=23% Similarity=0.390 Sum_probs=47.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-ChHHHhcc----CCCCCHHHHHHHHHHhhhHH
Q 028922 64 PHIKRGNISDQEEDLILRLHKLLGN-RWSLIAGR----LPGRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 64 p~~~k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~q~k~rw~~~l~~~ 116 (202)
...++++||.|||+.|+++|++||. +|+.|+.. |++||+.+|++||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457899999999999999999996 99999986 48999999999999999544
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.34 E-value=1.1e-12 Score=94.60 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHhhhHH
Q 028922 67 KRGNISDQEEDLILRLHKLLG----NRWSLIAGRLPGRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 67 ~k~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~ 116 (202)
.+++||.|||.+|++++..|| ++|.+||..|||||+.||++||..++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 57999999999999999999999987653
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.23 E-value=2.9e-12 Score=92.50 Aligned_cols=48 Identities=21% Similarity=0.499 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCChhHHhhhhccCcCccccchhhhccc
Q 028922 14 NRGAWTAEEDQKLAQAIEVHG---PKKWKSVAAKAGLNRCGKSCRLRWMNYL 62 (202)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L 62 (202)
.++.||+|||++|..+++.|| +.+|..||+.|| |||+.||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 468999999999999999997 578999999999 999999999998764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.6e-11 Score=81.85 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhh
Q 028922 67 KRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHL 113 (202)
Q Consensus 67 ~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l 113 (202)
..++||++|+.++++++..||++|..||..||+||..||..+|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999999999999999999999997543
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.18 E-value=4.2e-11 Score=86.12 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=60.5
Q ss_pred ccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccC-----CCCCHHHHHHHHHHhhhHHHhhcC
Q 028922 51 GKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLLGNRWSLIAGRL-----PGRTDNEIKNYWNSHLSKKIKQNE 121 (202)
Q Consensus 51 ~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l-----~gRT~~q~k~rw~~~l~~~~~~~~ 121 (202)
+.=+.++|.++|.+ ++||.||+..|+.|+++||.+|..|+..+ ++||..++|+||+.+.++.+....
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35578899999976 89999999999999999999999999999 589999999999999988777664
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=76.89 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhcc
Q 028922 11 KEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNY 61 (202)
Q Consensus 11 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 61 (202)
..-..++||++|+++|.+++..|| .+|..||..|+ +||..||..+|...
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 334668999999999999999999 79999999999 99999999998654
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=3.3e-10 Score=78.00 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 65 HIKRGNISDQEEDLILRLHKLLG----NRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 65 ~~~k~~WT~eEd~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
..+.++||.||+++|.+++.+|+ .+|.+||..+ |||..+|++||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 5699999998 99999999999887544
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.02 E-value=5.7e-10 Score=91.77 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 67 KRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 67 ~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
..++||+||+.++++++.+||++|..||+.+++||..||+++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999987765
No 63
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.94 E-value=5.5e-10 Score=101.25 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhh
Q 028922 69 GNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLS 114 (202)
Q Consensus 69 ~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~ 114 (202)
.+||.+|..++++++.+||..|..||..+++||..||+++|..+-+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999976443
No 64
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.91 E-value=5.2e-10 Score=74.35 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHhh---hhccCcCccccchhhhcccc
Q 028922 14 NRGAWTAEEDQKLAQAIEVHGPKKWKSVAA---KAGLNRCGKSCRLRWMNYLR 63 (202)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~---~l~~~Rt~~qcr~Rw~~~L~ 63 (202)
+|++||+|||+.|++.|++||. +|..|+. .++ +||...+++||++...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 6899999999999999999995 9999995 556 9999999999998654
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=8.9e-10 Score=75.78 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=44.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---CCChhHHhhhhccCcCccccchhhhcccc
Q 028922 11 KEANRGAWTAEEDQKLAQAIEVHG---PKKWKSVAAKAGLNRCGKSCRLRWMNYLR 63 (202)
Q Consensus 11 ~~~~kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 63 (202)
.....+.||.|||++|.+++++|+ +.+|..||+.+ |||+.+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 345678999999999999999997 46899999997 6999999999987653
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.76 E-value=5.6e-09 Score=71.80 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhccCcCccccchhhhcccc
Q 028922 15 RGAWTAEEDQKLAQAIEVHGP---KKWKSVAAKAGLNRCGKSCRLRWMNYLR 63 (202)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 63 (202)
...||.+|+++|.++++.|+. .+|..||..|| +||..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence 467999999999999999964 57999999999 9999999999988754
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=1.3e-08 Score=70.05 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHHHhh
Q 028922 67 KRGNISDQEEDLILRLHKLLGN----RWSLIAGRLPGRTDNEIKNYWNSHL 113 (202)
Q Consensus 67 ~k~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~l~gRT~~q~k~rw~~~l 113 (202)
....||.+|+.+|..++..|+. +|.+||..+||||..+|+.||..++
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3468999999999999999984 5999999999999999999998764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.69 E-value=2e-08 Score=66.38 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-hHHHhc-cCCCCCHHHHHHHHHHhhh
Q 028922 68 RGNISDQEEDLILRLHKLL--------GNR-WSLIAG-RLPGRTDNEIKNYWNSHLS 114 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~--------G~~-W~~Ia~-~l~gRT~~q~k~rw~~~l~ 114 (202)
+.+||.|||..|+..|..| |+. |..|+. .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 544 999999 7999999999999988764
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.66 E-value=9.1e-09 Score=68.05 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhHHhh-hhccCcCccccchhhhcccc
Q 028922 15 RGAWTAEEDQKLAQAIEVH--------GPKKWKSVAA-KAGLNRCGKSCRLRWMNYLR 63 (202)
Q Consensus 15 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~l~~~Rt~~qcr~Rw~~~L~ 63 (202)
|.+||+|||+.|...|..+ |..-|..+|+ .++ ++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 4346999999 788 9999999999998874
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.66 E-value=1.9e-08 Score=82.73 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhcccc
Q 028922 13 ANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLR 63 (202)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~ 63 (202)
...++||++|++++++++.+|| ++|..||+.|+ +||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4567999999999999999999 89999999999 9999999999988754
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=1.1e-07 Score=63.58 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=44.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhc-cCCCCCHHHHHHHHHH
Q 028922 63 RPHIKRGNISDQEEDLILRLHKLLGNRWSLIAG-RLPGRTDNEIKNYWNS 111 (202)
Q Consensus 63 ~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~-~l~gRT~~q~k~rw~~ 111 (202)
.|.+...+||+||..++.+++.+||..|..|++ .|++||..+|...|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 366778899999999999999999999999999 5899999999988863
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.48 E-value=4e-07 Score=78.34 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=79.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccch-------hhhc----------------------------
Q 028922 16 GAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRL-------RWMN---------------------------- 60 (202)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~-------Rw~~---------------------------- 60 (202)
+.||..+...++.++.+||..+|..||..|+ |+|...++. ||..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999998 899876654 1100
Q ss_pred ---------------cccCCCCCCCCCHHHHHHHHHHHHHhCC----ChHHHhc------------cCCCCCHHHHHHHH
Q 028922 61 ---------------YLRPHIKRGNISDQEEDLILRLHKLLGN----RWSLIAG------------RLPGRTDNEIKNYW 109 (202)
Q Consensus 61 ---------------~L~p~~~k~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~------------~l~gRT~~q~k~rw 109 (202)
+..+..+...||++||..||-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0001224568999999999999999995 4999962 44689999999999
Q ss_pred HHhhhHH
Q 028922 110 NSHLSKK 116 (202)
Q Consensus 110 ~~~l~~~ 116 (202)
..+++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888653
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.41 E-value=3e-08 Score=67.81 Aligned_cols=44 Identities=18% Similarity=0.380 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhHHhhhhccCcCccccchhhh
Q 028922 15 RGAWTAEEDQKLAQAIEVHGP---KKWKSVAAKAGLNRCGKSCRLRWM 59 (202)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l~~~Rt~~qcr~Rw~ 59 (202)
-+.||.+|+++|.++++.|+. .+|.+||..|| |||+.+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 457999999999999999964 48999999999 999999999985
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=3.5e-07 Score=61.03 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=45.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHhh-hhccCcCccccchhhhc
Q 028922 9 TKKEANRGAWTAEEDQKLAQAIEVHGPKKWKSVAA-KAGLNRCGKSCRLRWMN 60 (202)
Q Consensus 9 ~~~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~~Rt~~qcr~Rw~~ 60 (202)
+.|.+....||++|-+++.+++.+|| .+|..|++ .|+ +|+..||...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 56888889999999999999999999 79999999 488 9999999987754
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.34 E-value=8.7e-08 Score=65.51 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----ChHHHhccCCCCCHHHHHHHHH
Q 028922 67 KRGNISDQEEDLILRLHKLLGN----RWSLIAGRLPGRTDNEIKNYWN 110 (202)
Q Consensus 67 ~k~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~l~gRT~~q~k~rw~ 110 (202)
..++||.+|+++|..++..|+. +|.+||..|||||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3568999999999999999985 6999999999999999999884
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.30 E-value=8.2e-07 Score=62.90 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 70 NISDQEEDLILRLHKLLGN---RWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 70 ~WT~eEd~~Ll~~v~~~G~---~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
-||.|||..||..+++-|. .|..||..|.+|+++||++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 7999999999999999996 799999999999999999999988754
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.24 E-value=2.9e-06 Score=60.64 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=52.7
Q ss_pred hhhhccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCC-----CCCHHHHHHHHHHhhhHHHhhcC
Q 028922 56 LRWMNYLRPHIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLP-----GRTDNEIKNYWNSHLSKKIKQNE 121 (202)
Q Consensus 56 ~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~-----gRT~~q~k~rw~~~l~~~~~~~~ 121 (202)
+.|..+|. ...||.||-..|+.++++|+-+|..|+..+. +||..++|.||+.+.++.+....
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 34555554 3689999999999999999999999998873 79999999999999988776654
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.23 E-value=2.1e-06 Score=58.42 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhc-cCCCCCHHHHHHHHH
Q 028922 68 RGNISDQEEDLILRLHKLLGNRWSLIAG-RLPGRTDNEIKNYWN 110 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~-~l~gRT~~q~k~rw~ 110 (202)
..+||++|..++.+++.+||..|..|+. .||+||..+|...|+
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 5689999999999999999999999999 589999999998886
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.21 E-value=2.2e-06 Score=61.62 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHH
Q 028922 68 RGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNS 111 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~ 111 (202)
...||++|..++.+++..||++|..||..||+||..+|-..|+.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998864
No 80
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.50 E-value=2e-07 Score=62.64 Aligned_cols=44 Identities=14% Similarity=0.315 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHhCC---ChHHHhccCCCCCHHHHHHHHHHhhh
Q 028922 70 NISDQEEDLILRLHKLLGN---RWSLIAGRLPGRTDNEIKNYWNSHLS 114 (202)
Q Consensus 70 ~WT~eEd~~Ll~~v~~~G~---~W~~Ia~~l~gRT~~q~k~rw~~~l~ 114 (202)
-||.|||..||..+++-|. .|..||..| +||++||.+||+.++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999996 699999999 9999999999998764
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.96 E-value=6e-06 Score=74.88 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhcc
Q 028922 13 ANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNY 61 (202)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 61 (202)
....+||.+|-.++++++.+|| .+|..||..|+ +||..||+.+|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3468999999999999999999 79999999999 99999999998765
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.86 E-value=8.9e-06 Score=55.30 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHhh-hhccCcCccccchhhhc
Q 028922 14 NRGAWTAEEDQKLAQAIEVHGPKKWKSVAA-KAGLNRCGKSCRLRWMN 60 (202)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~l~~~Rt~~qcr~Rw~~ 60 (202)
....||++|-+++.+++..|| .+|..|++ .|+ +||..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 356899999999999999999 79999999 588 9999999987754
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.82 E-value=1.1e-05 Score=57.92 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhc
Q 028922 15 RGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMN 60 (202)
Q Consensus 15 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~ 60 (202)
...||++|-+++.+++..|| ++|..||..|+ +||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 46899999999999999999 89999999999 9999999987753
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.67 E-value=2.8e-05 Score=55.69 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhc----cCcCccccchhhhcccc
Q 028922 13 ANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAG----LNRCGKSCRLRWMNYLR 63 (202)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~----~~Rt~~qcr~Rw~~~L~ 63 (202)
+..+.||.||+..|.+++.+|+ .+|..|+..+. .+||..++++||..+..
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 3448999999999999999999 89999999983 27999999999987543
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.59 E-value=0.0001 Score=59.63 Aligned_cols=102 Identities=11% Similarity=0.146 Sum_probs=67.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCChhHHhhh--hccCcCccccch-------hhhc--------------------
Q 028922 12 EANRGAWTAEEDQKLAQAIEVHG--PKKWKSVAAK--AGLNRCGKSCRL-------RWMN-------------------- 60 (202)
Q Consensus 12 ~~~kg~WT~eED~~L~~~v~~~g--~~~W~~Ia~~--l~~~Rt~~qcr~-------Rw~~-------------------- 60 (202)
.-....||..|=..|+.++.+|| ..+|..|+.. +. +|+...+.. ++..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK 82 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 33456799999999999999999 4689999875 34 555533222 0000
Q ss_pred ------------------------cc---------------c-----CCCCCCCCCHHHHHHHHHHHHHhC-CChHHHhc
Q 028922 61 ------------------------YL---------------R-----PHIKRGNISDQEEDLILRLHKLLG-NRWSLIAG 95 (202)
Q Consensus 61 ------------------------~L---------------~-----p~~~k~~WT~eEd~~Ll~~v~~~G-~~W~~Ia~ 95 (202)
.| - +......||.+||..||.++.+|| ++|..|..
T Consensus 83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 00 0 001123699999999999999999 88999944
Q ss_pred --cC------------CCCCHHHHHHHHHHhhh
Q 028922 96 --RL------------PGRTDNEIKNYWNSHLS 114 (202)
Q Consensus 96 --~l------------~gRT~~q~k~rw~~~l~ 114 (202)
.+ ..+++..+..|...+|+
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 21 12456678888776554
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.41 E-value=0.00056 Score=60.14 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccch---------------------------------------
Q 028922 16 GAWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRL--------------------------------------- 56 (202)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~--------------------------------------- 56 (202)
+.||.-+=..++.++.+||..+-..||..|++++|...++.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999998899999999965688766554
Q ss_pred -----hhhcc---c----cCC-CCCCCCCHHHHHHHHHHHHHhCC----ChHHHhcc------------CCCCCHHHHHH
Q 028922 57 -----RWMNY---L----RPH-IKRGNISDQEEDLILRLHKLLGN----RWSLIAGR------------LPGRTDNEIKN 107 (202)
Q Consensus 57 -----Rw~~~---L----~p~-~~k~~WT~eEd~~Ll~~v~~~G~----~W~~Ia~~------------l~gRT~~q~k~ 107 (202)
+|.+- | .++ -+...||++||..||-++.+||- .|..|-.. +..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 11100 0 011 13457999999999999999994 59999332 35799999999
Q ss_pred HHHHhhhHHHhh
Q 028922 108 YWNSHLSKKIKQ 119 (202)
Q Consensus 108 rw~~~l~~~~~~ 119 (202)
|...+++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999988665444
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.40 E-value=8.5e-05 Score=52.58 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChhHHhhhhccCcCccccchhhhcc
Q 028922 16 GAWTAEEDQKLAQAIEVHGP--KKWKSVAAKAGLNRCGKSCRLRWMNY 61 (202)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 61 (202)
-.||.|||..|+...++.|+ ..|..||+.|+ +|++.|+.+||+..
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 47999999999999999985 47999999999 99999999999753
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.37 E-value=0.00014 Score=50.92 Aligned_cols=48 Identities=13% Similarity=0.343 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC------C----ChHHHhccC----CCCCHHHHHHHHHHhhhH
Q 028922 68 RGNISDQEEDLILRLHKLLG------N----RWSLIAGRL----PGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G------~----~W~~Ia~~l----~gRT~~q~k~rw~~~l~~ 115 (202)
...||.+|-..||.++.... . .|..||..| -.||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 56899999999999997532 1 399999997 379999999999986654
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.33 E-value=5.4e-05 Score=53.08 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CChhHHhhhhc---cCcCccccchhhhccc
Q 028922 14 NRGAWTAEEDQKLAQAIEVHGP---------KKWKSVAAKAG---LNRCGKSCRLRWMNYL 62 (202)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l~---~~Rt~~qcr~Rw~~~L 62 (202)
+...||.+|-..|+.+...... ..|..||..|. -.||+.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999975311 15999999873 5799999999998753
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.10 E-value=9.3e-05 Score=49.64 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChhHHhhhhccCcCccccchhhhccc
Q 028922 16 GAWTAEEDQKLAQAIEVHGP--KKWKSVAAKAGLNRCGKSCRLRWMNYL 62 (202)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L 62 (202)
-.||.|||..|+..+++.|+ ..|..||+.+ +|++.|+..||+..+
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLM 61 (70)
Confidence 47999999999999999986 3799999888 699999999998754
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.52 E-value=0.0068 Score=40.23 Aligned_cols=47 Identities=13% Similarity=0.014 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---hHHHhccC--CCCCHHHHHHHHHHhh
Q 028922 67 KRGNISDQEEDLILRLHKLLGNR---WSLIAGRL--PGRTDNEIKNYWNSHL 113 (202)
Q Consensus 67 ~k~~WT~eEd~~Ll~~v~~~G~~---W~~Ia~~l--~gRT~~q~k~rw~~~l 113 (202)
.+-.||+|..+.++.+|..+|.. +..|.+.| +|.|..+|+.|.+.+-
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999954 88998886 7999999999987654
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.43 E-value=0.012 Score=41.86 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHhhhhc----cCcCccccchhhhccc
Q 028922 13 ANRGAWTAEEDQKLAQAIEVHGPKKWKSVAAKAG----LNRCGKSCRLRWMNYL 62 (202)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~----~~Rt~~qcr~Rw~~~L 62 (202)
+.-..||.||...|..++..+. .+|--|+.... ..||..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999 89999999864 2689999999998754
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.26 E-value=0.036 Score=47.51 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCCCCCHHHHHHHHHHhh
Q 028922 68 RGNISDQEEDLILRLHKLLGN-RWSLIAGRLPGRTDNEIKNYWNSHL 113 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~q~k~rw~~~l 113 (202)
-+.||..+...++.++.+||. .|..||..|+|+|...|+.++....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 457999999999999999995 6999999999999999976655433
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.60 E-value=0.056 Score=35.75 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC--ChhHHhhhhc-cCcCccccchhhhcc
Q 028922 13 ANRGAWTAEEDQKLAQAIEVHGPK--KWKSVAAKAG-LNRCGKSCRLRWMNY 61 (202)
Q Consensus 13 ~~kg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~l~-~~Rt~~qcr~Rw~~~ 61 (202)
..|-.||+|.-+.+..+|...|.. .+..|.+.|+ .|.|..+++.|.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457899999999999999999943 2789998875 256777777766544
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.50 E-value=0.052 Score=43.42 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHhhh
Q 028922 14 NRGAWTAEEDQKLAQAIEVHGPKKWKSVAAK 44 (202)
Q Consensus 14 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 44 (202)
....||.+||..|+..|.+||..+|..|..-
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 3456999999999999999999999999864
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.16 E-value=0.11 Score=43.85 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHhC-CChHHHhc
Q 028922 70 NISDQEEDLILRLHKLLG-NRWSLIAG 95 (202)
Q Consensus 70 ~WT~eEd~~Ll~~v~~~G-~~W~~Ia~ 95 (202)
.|+.+||..||.+|-+|| +.|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999 78999943
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=91.00 E-value=0.17 Score=42.51 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHhhh
Q 028922 16 GAWTAEEDQKLAQAIEVHGPKKWKSVAAK 44 (202)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 44 (202)
..|+.+||..|+..|.+||.++|..|..-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 46999999999999999999999999853
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=78.25 E-value=4.1 Score=35.64 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-ChHHHhccCC-CCCHHHHHHHHHHhhhHH
Q 028922 68 RGNISDQEEDLILRLHKLLGN-RWSLIAGRLP-GRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G~-~W~~Ia~~l~-gRT~~q~k~rw~~~l~~~ 116 (202)
-+.||.-+=..++.++.+||. .-..||..|. |+|...|+ +|...+-.+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~R 172 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSN 172 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHh
Confidence 357999999999999999995 5999999996 99999999 555544433
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=77.60 E-value=1.8 Score=31.36 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=30.7
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.|..+|...|+ .|..||..|.--.+..++..|..+|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 47788888884 699999998433478999999998866
No 100
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=75.85 E-value=2.8 Score=32.57 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=23.2
Q ss_pred CCCCCCCCCCHHHHHHHH--------HHHHHhCCCChhHHhh
Q 028922 10 KKEANRGAWTAEEDQKLA--------QAIEVHGPKKWKSVAA 43 (202)
Q Consensus 10 ~~~~~kg~WT~eED~~L~--------~~v~~~g~~~W~~Ia~ 43 (202)
-|.-.+|.||+++|+.|. +++++|| |..|..
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 356679999999999875 5778888 444443
No 101
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=75.70 E-value=4.1 Score=29.53 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCC--C--HHHHHHHHHHhhhH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRLPGR--T--DNEIKNYWNSHLSK 115 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l~gR--T--~~q~k~rw~~~l~~ 115 (202)
.|..+|.+.|+ .|..||..|.-- + +.+++..|..+|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57788888884 699999998221 1 56789999998876
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=75.23 E-value=4.8 Score=28.48 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCC-C---HHHHHHHHHHhhhHH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRLPGR-T---DNEIKNYWNSHLSKK 116 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l~gR-T---~~q~k~rw~~~l~~~ 116 (202)
.|..+|.+.|+ .|..||..|.-- + +.+++..|..+|.+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 57777788874 699999999322 2 468899999888663
No 103
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.80 E-value=5.8 Score=28.94 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCC--C--HHHHHHHHHHhhhHH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRLPGR--T--DNEIKNYWNSHLSKK 116 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l~gR--T--~~q~k~rw~~~l~~~ 116 (202)
.|..+|.+.|+ .|..|+..|.-- + +.++|..|..+|.+-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47778888884 699999998221 2 358899999988773
No 104
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=71.25 E-value=5.9 Score=28.96 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCCC----HHHHHHHHHHhhhHH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRLPGRT----DNEIKNYWNSHLSKK 116 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l~gRT----~~q~k~rw~~~l~~~ 116 (202)
.|..+|.+.|+ .|..||..|.--+ +.+++..|..+|.+-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57778888884 6999999982222 467899999988763
No 105
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=70.86 E-value=5.6 Score=29.15 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=29.9
Q ss_pred HHHHHHHHhCC--------ChHHHhccC--CCC---CHHHHHHHHHHhhhHH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRL--PGR---TDNEIKNYWNSHLSKK 116 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l--~gR---T~~q~k~rw~~~l~~~ 116 (202)
.|..+|.+.|+ .|..||..| |.- .+..++.+|..+|.+-
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 47788888885 699999998 322 2467899999888764
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=69.70 E-value=2.9 Score=30.74 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=30.6
Q ss_pred HHHHHHHHhCC--------ChHHHhccCCCCCHHHHHHHHHHhhhHH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRLPGRTDNEIKNYWNSHLSKK 116 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l~gRT~~q~k~rw~~~l~~~ 116 (202)
.|..+|.+.|+ .|..||..|.--++..++..|..+|.+-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 47777777774 5999999983333899999999999774
No 107
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=69.57 E-value=6.9 Score=28.69 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC--------ChHHHhccC--CCC---CHHHHHHHHHHhhhHH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRL--PGR---TDNEIKNYWNSHLSKK 116 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l--~gR---T~~q~k~rw~~~l~~~ 116 (202)
.|..+|...|+ .|..||..| +.. .+.+++..|..+|.+-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57788888884 699999998 322 2578899999998774
No 108
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=69.54 E-value=3.1 Score=30.55 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=33.2
Q ss_pred CChhHHhhhhccCcCc----cccchhhhccccCCCCCCCCCHHHHHHHHHHHH
Q 028922 36 KKWKSVAAKAGLNRCG----KSCRLRWMNYLRPHIKRGNISDQEEDLILRLHK 84 (202)
Q Consensus 36 ~~W~~Ia~~l~~~Rt~----~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~ 84 (202)
+.|..||..|+...+. ...+..|.++|.|- ...+++|-..|..-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 3699999999744433 45678898888762 2378888888877664
No 109
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=67.89 E-value=7 Score=24.39 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 71 ISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 71 WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.++ .+..++.++-..|-.+..||..+ |-+...|+.+....+.+
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44455666557788999999999 88999998877665433
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=67.64 E-value=3.1 Score=30.09 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC-------CChhHHhhhhccCcCccccchhhhccccC
Q 028922 25 KLAQAIEVHGP-------KKWKSVAAKAGLNRCGKSCRLRWMNYLRP 64 (202)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p 64 (202)
+|..+|...|. +.|..||..|+ .-.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg-~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQ-ISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHT-SCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 56777776653 47999999998 33477788888888764
No 111
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=67.27 E-value=7.5 Score=29.22 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=30.3
Q ss_pred HHHHHHHHhCC--------ChHHHhccC--CCC---CHHHHHHHHHHhhhHH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRL--PGR---TDNEIKNYWNSHLSKK 116 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l--~gR---T~~q~k~rw~~~l~~~ 116 (202)
.|..+|.+.|+ .|..||..| +.. .+.+++..|..+|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 57778888885 699999998 322 2568999999999774
No 112
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=64.94 E-value=8.7 Score=24.61 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHH----hCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 71 ISDQEEDLILRLHKL----LGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 71 WT~eEd~~Ll~~v~~----~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.++.|- .++.+.-- .|..+..||..+ |-|...|+.+....+.+
T Consensus 11 L~~~er-~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 11 LSEREA-MVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp SCHHHH-HHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344444 44444443 467899999999 89999999877766544
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=63.46 E-value=4.2 Score=28.16 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC--------ChHHHhccCC--C-C-CHHHHHHHHHHhhhH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRLP--G-R-TDNEIKNYWNSHLSK 115 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l~--g-R-T~~q~k~rw~~~l~~ 115 (202)
.|..+|.+.|+ .|..||..|. . - .+.+++..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 47777777763 6999999972 2 1 256889989888765
No 114
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=60.12 E-value=6 Score=28.03 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCC-------CChhHHhhhhccCcC----ccccchhhhccccC
Q 028922 24 QKLAQAIEVHGP-------KKWKSVAAKAGLNRC----GKSCRLRWMNYLRP 64 (202)
Q Consensus 24 ~~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt----~~qcr~Rw~~~L~p 64 (202)
-+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 356667766652 479999999974332 35677788888765
No 115
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=58.13 E-value=10 Score=23.94 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=23.9
Q ss_pred hCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 86 LGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 86 ~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.|..+..||..+ |-|...|+.+....+++
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467899999999 99999999887765543
No 116
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=56.88 E-value=5 Score=28.43 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC--------ChHHHhccCC--CC---CHHHHHHHHHHhhhH
Q 028922 78 LILRLHKLLGN--------RWSLIAGRLP--GR---TDNEIKNYWNSHLSK 115 (202)
Q Consensus 78 ~Ll~~v~~~G~--------~W~~Ia~~l~--gR---T~~q~k~rw~~~l~~ 115 (202)
.|..+|...|+ .|..||..|. .. .+.+++..|..+|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777788873 6999999982 21 246789999988865
No 117
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=56.44 E-value=5.2 Score=28.93 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=26.8
Q ss_pred HHHHHHHHhCC-------CChhHHhhhhccCcC---ccccchhhhccccC
Q 028922 25 KLAQAIEVHGP-------KKWKSVAAKAGLNRC---GKSCRLRWMNYLRP 64 (202)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt---~~qcr~Rw~~~L~p 64 (202)
+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777777753 479999999974332 24566677776654
No 118
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=55.53 E-value=7.3 Score=29.54 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=28.1
Q ss_pred hHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHH
Q 028922 39 KSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRL 82 (202)
Q Consensus 39 ~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~ 82 (202)
..||.++. |+|+.+||..+. + ...+|+||++.|.+-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 47888888 999999999762 3 336999999887643
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=54.69 E-value=5.5 Score=29.25 Aligned_cols=40 Identities=25% Similarity=0.465 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CChhHHhhhhccCcC----ccccchhhhccccC
Q 028922 25 KLAQAIEVHGP-------KKWKSVAAKAGLNRC----GKSCRLRWMNYLRP 64 (202)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt----~~qcr~Rw~~~L~p 64 (202)
+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777663 479999999974433 24567777777755
No 120
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=49.99 E-value=20 Score=23.92 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhh
Q 028922 75 EEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLS 114 (202)
Q Consensus 75 Ed~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~ 114 (202)
.+..++.++-..|-.-..||..| |-+...|+.+....++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVR 79 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34456666556788899999999 8999999888765543
No 121
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=49.53 E-value=22 Score=24.01 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhHHhhhhccCcC
Q 028922 17 AWTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRC 50 (202)
Q Consensus 17 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt 50 (202)
....-|.+.|.+++..++ .+..+.|+.++..|+
T Consensus 37 ~l~~~Er~~I~~aL~~~~-GN~s~AA~~LGISR~ 69 (81)
T 1umq_A 37 SADRVRWEHIQRIYEMCD-RNVSETARRLNMHRR 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHTT-SCHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHHHhC-CCHHHHHHHhCCCHH
Confidence 344557788888999988 789999999985544
No 122
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=49.08 E-value=7.7 Score=29.10 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCC
Q 028922 21 EEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPH 65 (202)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~ 65 (202)
+-|.+|+.+++..+.-.+..||+.++ -+...|+.|..+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45888999999999889999999996 78888888777654433
No 123
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.23 E-value=9 Score=27.87 Aligned_cols=39 Identities=23% Similarity=0.437 Sum_probs=24.7
Q ss_pred HHHHHHHHhCC-------CChhHHhhhhccCcCc---cccchhhhcccc
Q 028922 25 KLAQAIEVHGP-------KKWKSVAAKAGLNRCG---KSCRLRWMNYLR 63 (202)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt~---~qcr~Rw~~~L~ 63 (202)
+|..+|.+.|. +.|..||..|+...+. .+.+..|.++|.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 56677776653 4799999999733321 345556666554
No 124
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=46.54 E-value=33 Score=21.68 Aligned_cols=42 Identities=19% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 71 ISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 71 WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.|+.|-+ ++.++ ..|..-..||..+ |-+...|+.+....+.+
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4455544 44555 5678899999999 88999999877765533
No 125
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=45.83 E-value=11 Score=28.87 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=27.7
Q ss_pred hhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHH
Q 028922 38 WKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLIL 80 (202)
Q Consensus 38 W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll 80 (202)
=..||.++. |+|+.++|..|. + ..-+|+||++.+.
T Consensus 126 c~~vA~~ik-gktpeeiR~~f~------I-~nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTFN------I-VNDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHT------C-CCCCCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHH
Confidence 467888888 999999998763 3 3359999999874
No 126
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=44.01 E-value=24 Score=26.36 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=33.8
Q ss_pred HHHHHHHHhCC-------CChhHHhhhhccCcC----ccccchhhhccccC--CCCCCCCCHHHHHH
Q 028922 25 KLAQAIEVHGP-------KKWKSVAAKAGLNRC----GKSCRLRWMNYLRP--HIKRGNISDQEEDL 78 (202)
Q Consensus 25 ~L~~~v~~~g~-------~~W~~Ia~~l~~~Rt----~~qcr~Rw~~~L~p--~~~k~~WT~eEd~~ 78 (202)
+|..+|.+.|. +.|..||..|+...+ +.+++..|.++|-| ...+|.=+++|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~ 134 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQA 134 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 46666766653 469999999974332 24567788888866 23445544454443
No 127
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.80 E-value=31 Score=22.76 Aligned_cols=29 Identities=14% Similarity=0.058 Sum_probs=23.5
Q ss_pred hCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 86 LGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 86 ~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.|-.+..||..+ |-|...|+.+-...+++
T Consensus 37 ~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 37 KPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467899999999 99999999877665543
No 128
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.01 E-value=41 Score=22.66 Aligned_cols=43 Identities=33% Similarity=0.366 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 70 NISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 70 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
..|+.|-+.|. ++ ..|..-..||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666666554 45 7788899999999 88999999887765543
No 129
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=40.80 E-value=13 Score=27.94 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=27.2
Q ss_pred hHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHH
Q 028922 39 KSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILR 81 (202)
Q Consensus 39 ~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~ 81 (202)
..||.++. |+|+.+||..|. + ...+|+||++.+.+
T Consensus 120 ~~va~~i~-gkt~eeir~~f~------I-~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIK-GKTPEEIRKTFN------I-KNDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHS-SCCHHHHHHHTT------C-CCCSCTTHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 46888888 999999999773 2 34699999987653
No 130
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=40.57 E-value=55 Score=21.96 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 67 KRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 67 ~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.....|+.|-+.|.-++ .|..-..||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34467888777665443 788999999999 89999999988876544
No 131
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=40.48 E-value=40 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.005 Sum_probs=23.4
Q ss_pred hCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 86 LGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 86 ~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
.|-....||..+ |-+...|+.+....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467899999999 89999999887765543
No 132
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=39.66 E-value=44 Score=23.43 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHH
Q 028922 72 SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIK 106 (202)
Q Consensus 72 T~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k 106 (202)
++.-+..|..+....|..|..+|..| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 66667778888889999999999999 77766554
No 133
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.25 E-value=47 Score=20.50 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhh
Q 028922 69 GNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLS 114 (202)
Q Consensus 69 ~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~ 114 (202)
...|+.|-+.|.. + ..|..-..||..+ |-+...|+.+......
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3567777665544 4 5678899999999 8899999988776553
No 134
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.22 E-value=45 Score=21.74 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 70 NISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 70 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
..|+.|-+.|. ++ ..|..-..||..+ |-+...|+.+-...+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665554 44 6788899999999 89999999887765533
No 135
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=37.34 E-value=53 Score=23.01 Aligned_cols=37 Identities=16% Similarity=0.059 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhh
Q 028922 76 EDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHL 113 (202)
Q Consensus 76 d~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l 113 (202)
+..++.++-..|-.-..||..+ |-|...|+.+....+
T Consensus 30 ~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 30 QRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTG 66 (113)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 3445556556788899999999 889999988766544
No 136
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=37.30 E-value=25 Score=25.94 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=23.9
Q ss_pred HhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 85 LLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 85 ~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
..|-....||..+ |-|...|+++....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3467899999999 88999999888766543
No 137
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.26 E-value=59 Score=20.13 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 028922 74 QEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKN 107 (202)
Q Consensus 74 eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~ 107 (202)
-|...|..++..+|++.+..|+.+ |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477788899999999999999998 555544443
No 138
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.03 E-value=34 Score=25.38 Aligned_cols=45 Identities=11% Similarity=0.032 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHhhhHHHhh
Q 028922 74 QEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIKQ 119 (202)
Q Consensus 74 eEd~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~~ 119 (202)
+-|..|+.++...| -.+..||+.+ |=|...|+.|.+.+....+-+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888888777 4699999999 999999999998877665443
No 139
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=34.12 E-value=47 Score=23.76 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHH
Q 028922 68 RGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIK 106 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k 106 (202)
...=|.+ .|..+....|..|..+|+.| |=+..+|.
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3344444 45556788999999999998 66666553
No 140
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=33.52 E-value=42 Score=23.93 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCChHHHhccCCCCCHHHHH
Q 028922 77 DLILRLHKLLGNRWSLIAGRLPGRTDNEIK 106 (202)
Q Consensus 77 ~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k 106 (202)
..|..+....|..|..+|..| |=|..+|.
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 456677788999999999999 66666553
No 141
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=33.22 E-value=45 Score=23.83 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=25.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHH
Q 028922 65 HIKRGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIK 106 (202)
Q Consensus 65 ~~~k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k 106 (202)
.+-...=|.+ .|..+....|..|..+|+.| |=+..+|.
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId 53 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 3334444555 45555788999999999998 66666553
No 142
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=33.17 E-value=69 Score=19.01 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 77 DLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 77 ~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
..++.++ ..|..-..||..+ |-+...|+.+....+.+
T Consensus 4 ~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 4 RQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3455553 5688889999999 88999999887766543
No 143
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=31.88 E-value=32 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.218 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccC
Q 028922 20 AEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRP 64 (202)
Q Consensus 20 ~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p 64 (202)
.+-|.+|+.++...+...+..||+.++ -+...|+.|.......
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRES 68 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHC
Confidence 355778888888888889999999996 6777788877665443
No 144
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=31.62 E-value=50 Score=23.38 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=22.4
Q ss_pred HhCCChHHHhccCCCCCHHHHHHHHHHhh
Q 028922 85 LLGNRWSLIAGRLPGRTDNEIKNYWNSHL 113 (202)
Q Consensus 85 ~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l 113 (202)
..|-....||..| |-|...|+.+....+
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3467899999999 889999988776544
No 145
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.88 E-value=65 Score=24.45 Aligned_cols=34 Identities=12% Similarity=-0.022 Sum_probs=24.9
Q ss_pred HHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhh
Q 028922 80 LRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLS 114 (202)
Q Consensus 80 l~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~ 114 (202)
+.+.-..|-....||..| |-|...|+.+....+.
T Consensus 196 l~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~ 229 (239)
T 1rp3_A 196 IQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALE 229 (239)
T ss_dssp HHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 333334467899999999 8999999887765543
No 146
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=30.84 E-value=80 Score=21.07 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHH
Q 028922 73 DQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNY 108 (202)
Q Consensus 73 ~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~r 108 (202)
.-|...|.+++..+|++-+..|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477788899999999999999998 6666655544
No 147
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=29.30 E-value=54 Score=21.65 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 70 NISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 70 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
..|+.|-+.|. ++ ..|..-..||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45666665554 44 5788899999999 88999999887765533
No 148
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=27.93 E-value=80 Score=22.04 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=21.4
Q ss_pred HHHHHHHHHhCCChHHHhccCCCCCHHHHH
Q 028922 77 DLILRLHKLLGNRWSLIAGRLPGRTDNEIK 106 (202)
Q Consensus 77 ~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k 106 (202)
..|-.+....|..|..+|+.| |=+..+|.
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~ 47 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIR 47 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHH
Confidence 345556677899999999999 66666553
No 149
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=27.20 E-value=1.2e+02 Score=21.75 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHhhhHHHh
Q 028922 74 QEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIK 118 (202)
Q Consensus 74 eEd~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~ 118 (202)
+-|..|+.++...| -.+..||+.+ |=+...|..|...+....+-
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 44667778877776 4699999999 88999999999887665543
No 150
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=27.10 E-value=1.2e+02 Score=21.56 Aligned_cols=64 Identities=11% Similarity=0.070 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC--hhHHhhhhccCcCccccchhhhccccCCCCCCCCCHHHHHHHHHHHHHh
Q 028922 16 GAWTAEEDQKLAQAIEVHGPKK--WKSVAAKAGLNRCGKSCRLRWMNYLRPHIKRGNISDQEEDLILRLHKLL 86 (202)
Q Consensus 16 g~WT~eED~~L~~~v~~~g~~~--W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~~k~~WT~eEd~~Ll~~v~~~ 86 (202)
.++++++-..|.+.+...+... -..|+..+| .++...|. |-|...+...++++=+.|+..+.+|
T Consensus 45 sk~~~e~a~~l~e~L~~~~l~~~~~a~IanL~P--~~~dElra-----li~s~e~~~~~deeL~~IL~~l~ky 110 (113)
T 4ayb_F 45 EKCDAESAQKVVEELSSIISREDVRAVLASICP--ITPDEVRS-----ILIMDSNRTYTSEDIQKIIDIIRKY 110 (113)
T ss_dssp CSSCHHHHHHHHHHHHTTCCCHHHHHHHHHHCC--CSSCCCCT-----TTTTTCCCCCCCTHHHHHHHHC---
T ss_pred cCCCHHHHHHHHHHHHHcCCCHHHHHHHHHcCC--CCHHHHHH-----HHHhhccCCCCHHHHHHHHHHHHHH
Confidence 4678988888888877666443 456777777 66655443 3455566678999999999998887
No 151
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=26.82 E-value=89 Score=21.88 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhh
Q 028922 71 ISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHL 113 (202)
Q Consensus 71 WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l 113 (202)
.++.+ ..++.++-..|..-..||..+ |-|...|+.+.....
T Consensus 23 L~~~~-r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTDKQ-MNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCHHH-HHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44444 445556556788999999999 899999988776554
No 152
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.22 E-value=1.5e+02 Score=20.22 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHHHHhhhH
Q 028922 68 RGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLSK 115 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw~~~l~~ 115 (202)
....|+.|-+.|.. + ..|..-..||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44678888776644 4 3688899999999 88999999887766544
No 153
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.50 E-value=89 Score=16.98 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHHHH
Q 028922 70 NISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYW 109 (202)
Q Consensus 70 ~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~rw 109 (202)
..+.++-..++.++ .-|.....||..| |-+...|..+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666666677665 4577899999999 78888777543
No 154
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.83 E-value=91 Score=23.36 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHhhhHHHh
Q 028922 73 DQEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIK 118 (202)
Q Consensus 73 ~eEd~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~ 118 (202)
.+-|..|+.++...| -.+..||+.+ |-+...|+.|...+....+-
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 355677888888877 4699999999 88999999999877655443
No 155
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.82 E-value=1.6e+02 Score=20.84 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 028922 68 RGNISDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKN 107 (202)
Q Consensus 68 k~~WT~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~ 107 (202)
....|.++-..++.++. -|..-..||..+ |.+...|..
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~r 67 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSK 67 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHH
Confidence 34788998888888884 688899999999 788877764
No 156
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=24.35 E-value=68 Score=21.22 Aligned_cols=38 Identities=16% Similarity=0.355 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHhhhhccCcCccccch
Q 028922 18 WTAEEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRL 56 (202)
Q Consensus 18 WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~ 56 (202)
.|..-++++...+..+|+..=-.||+.+| -||++++--
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~VNp 44 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVNR 44 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGTHH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhcCH
Confidence 34444778888999999999999999999 899987643
No 157
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=24.07 E-value=71 Score=21.90 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCCC-------CCCCCCHHHHHHHH
Q 028922 23 DQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPHI-------KRGNISDQEEDLIL 80 (202)
Q Consensus 23 D~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~~-------~k~~WT~eEd~~Ll 80 (202)
+..|.++|+.|| |..++..+. - .|.. .+|++ ++.||-.+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-I----~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-I----NCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-S----SSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-c----ccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 999998876 2 2222 24443 57799988877664
No 158
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=23.19 E-value=1.7e+02 Score=20.80 Aligned_cols=63 Identities=13% Similarity=-0.049 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhccccCC--CCCCCCCHHHHHHHH--------HHHHHhCC
Q 028922 23 DQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNYLRPH--IKRGNISDQEEDLIL--------RLHKLLGN 88 (202)
Q Consensus 23 D~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~L~p~--~~k~~WT~eEd~~Ll--------~~v~~~G~ 88 (202)
-+.|+.++.++. .+-..|.+.+- ++......--.-.+++. ...--|+..+|..|. +|+++||.
T Consensus 14 ~~~i~~lMeef~-~DL~sVTqAlL--K~SGel~at~~fL~~~~r~dg~PiWsr~DD~~Lqk~D~~~R~qL~~KfG~ 86 (111)
T 3k6g_A 14 IKIIRQLMEKFN-LDLSTVTQAFL--KNSGELEATSAFLASGQRADGYPIWSRQDDIDLQKDDEDTREALVKKFGA 86 (111)
T ss_dssp HHHHHHHHHHTT-CCHHHHHHHHH--HTTTCHHHHHHHHHHSSCTTSCCCCCHHHHHHHTCCCHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHh-hhHHHHHHHHH--HccccHHHHHHHHhCCCcCCCCcceeeccHHHHhcCCHHHHHHHHHHHhh
Confidence 456777888888 78888888775 55544433212233442 233469999998775 56778884
No 159
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.28 E-value=1.2e+02 Score=21.68 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhC-CChHHHhccCCCCCHHHHHHHHHHhhhHHHh
Q 028922 74 QEEDLILRLHKLLG-NRWSLIAGRLPGRTDNEIKNYWNSHLSKKIK 118 (202)
Q Consensus 74 eEd~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~q~k~rw~~~l~~~~~ 118 (202)
+-|..|+.++...| -.+..||+.+ |-+...|..|...+....+-
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 34567778877777 4699999999 88999999999877665543
No 160
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.06 E-value=51 Score=23.91 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhcc
Q 028922 21 EEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNY 61 (202)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 61 (202)
+-|..|+.++...+...+..||+.++ -+...|+.|....
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L 45 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKL 45 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHC--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 34667888888888789999999996 6777777766554
No 161
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.41 E-value=1.1e+02 Score=20.44 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHhCCChHHHhccCCCCCHHHHHH
Q 028922 72 SDQEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKN 107 (202)
Q Consensus 72 T~eEd~~Ll~~v~~~G~~W~~Ia~~l~gRT~~q~k~ 107 (202)
..-|.+.|.+++..+|++.++.|+.| |=+...+..
T Consensus 39 ~~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyr 73 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQR 73 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHH
Confidence 34567788899999999999999998 555555543
No 162
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=20.51 E-value=48 Score=23.95 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCCCChhHHhhhhccCcCccccchhhhcc
Q 028922 21 EEDQKLAQAIEVHGPKKWKSVAAKAGLNRCGKSCRLRWMNY 61 (202)
Q Consensus 21 eED~~L~~~v~~~g~~~W~~Ia~~l~~~Rt~~qcr~Rw~~~ 61 (202)
+-|..|+.++...+...+..||+.++ -+...|+.|....
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg--~s~~tv~~~l~~L 47 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILN--TTRQRIARRIDKL 47 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTT--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHH
Confidence 45677888888888889999999996 5666677665543
Done!