BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028925
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 17 IYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTI 76
IY GGY +SLS E Y+P W + L+ PR G C G LY +GGR++
Sbjct: 27 IYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 77 GN--SKFVDVYNPERHTWC--------QMKNGCVMVTAHA-VVGKKLFCMEWKNQRKLTI 125
GN S +D YNP + W + + G ++ H VG C+ + +
Sbjct: 85 GNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVER--- 141
Query: 126 FDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLE 163
++PE + W +V LT +G + G DG L S E
Sbjct: 142 YEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 187
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 19/181 (10%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGM--DGESLSSA-EVYDPDTDKWNLIESLRRPRWGCF 57
+ V R A V G +YAVGG DG + SSA + Y+P T++W+ PR
Sbjct: 57 LQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIG 116
Query: 58 ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV--MVTAHAVVGKKLFCM 115
DG +Y +GG NS V+ Y PER W + + AV+ + L+ +
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNS--VERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAV 174
Query: 116 -EWKNQRKLT---IFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLE 163
+ +L + PE N W+ + T S G + G DG+ L S+E
Sbjct: 175 GGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVE 234
Query: 164 E 164
Sbjct: 235 R 235
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 5 RYDFACAEVNGKIYAVGGYGMDGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDG 63
R A +N +YAVGG+ DG + L+SAE Y P+ ++W I + R G C
Sbjct: 159 RIGVGVAVLNRLLYAVGGF--DGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHN 216
Query: 64 KLYVMGGRSSFTIGNSKFVDVYNPERHTWC-----QMKNGCVMVTAHAVVGKKLFCMEWK 118
+Y GG NS V+ Y+ E TW + + + +T H +++ +
Sbjct: 217 CIYAAGGYDGQDQLNS--VERYDVETETWTFVAPXKHRRSALGITVHQ---GRIYVLGGY 271
Query: 119 NQR----KLTIFDPEDNSWKMVPVPLTGSSSIGF 148
+ + +DP+ ++W V +G S +G
Sbjct: 272 DGHTFLDSVECYDPDTDTWSEVTRXTSGRSGVGV 305
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 80/207 (38%), Gaps = 27/207 (13%)
Query: 2 NVARYDFACAEVNGKIYAVGG-YGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS 60
+V R ++G IYAVGG +G + S E Y+P+ D+W+L+ R G
Sbjct: 109 SVPRNRIGVGVIDGHIYAVGGSHGCIHHN--SVERYEPERDEWHLVAPXLTRRIGVGVAV 166
Query: 61 FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW------CQMKNGCVMVTAHAVVGKKLFC 114
+ LY +GG NS + Y PER+ W +++G + H +
Sbjct: 167 LNRLLYAVGGFDGTNRLNS--AECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGY 224
Query: 115 MEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLEEEP 166
+ +D E +W V S++G + G DG L S+E
Sbjct: 225 DGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE--- 281
Query: 167 SYSTLLYDPNAASGSEWQTSKIKPSGL 193
YDP+ + SE SG+
Sbjct: 282 -----CYDPDTDTWSEVTRXTSGRSGV 303
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 75/180 (41%), Gaps = 24/180 (13%)
Query: 3 VARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFD 62
V R +V IY GGY +SLS E Y+P W + L+ PR G C
Sbjct: 14 VPRGSHMAPKVGRLIYTAGGYFR--QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVG 71
Query: 63 GKLYVMGGRSSFTIGN--SKFVDVYNPERHTWC--------QMKNGCVMVTAHA-VVGKK 111
G LY +GGR++ GN S +D YNP + W + + G ++ H VG
Sbjct: 72 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGS 131
Query: 112 LFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLE 163
C+ + + ++PE + W +V LT +G + G DG L S E
Sbjct: 132 HGCIHHNSVER---YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 188
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGE-SLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
MN R ++ IYA GGY DG+ L+S E YD +T+ W + ++ R
Sbjct: 203 MNTIRSGAGVCVLHNCIYAAGGY--DGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT 260
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQM 95
G++YV+GG T +S V+ Y+P+ TW ++
Sbjct: 261 VHQGRIYVLGGYDGHTFLDS--VECYDPDTDTWSEV 294
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGM--DGESLSSA-EVYDPDTDKWNLIESLRRPRWGCF 57
+ V R A V G +YAVGG DG + SSA + Y+P T++W+ + PR
Sbjct: 58 LQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 117
Query: 58 ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAH-----AVVGKKL 112
DG +Y +GG NS V+ Y PER W + M+T AV+ + L
Sbjct: 118 VGVIDGHIYAVGGSHGCIHHNS--VERYEPERDEWHLV---APMLTRRIGVGVAVLNRLL 172
Query: 113 FCM-EWKNQRKLT---IFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLF 160
+ + + +L + PE N W+M+ T S G + G DG+ L
Sbjct: 173 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN 232
Query: 161 SLEE 164
S+E
Sbjct: 233 SVER 236
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M R A +N +YAVGG+ DG + L+SAE Y P+ ++W +I ++ R G C
Sbjct: 156 MLTRRIGVGVAVLNRLLYAVGGF--DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC 213
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC-----QMKNGCVMVTAHAVVGKKLFC 114
+Y GG NS V+ Y+ E TW + + + +T H +++
Sbjct: 214 VLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFVAPMKHRRSALGITVHQ---GRIYV 268
Query: 115 MEWKNQR----KLTIFDPEDNSWKMVPVPLTGSSSIGF 148
+ + + +DP+ ++W V +G S +G
Sbjct: 269 LGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGV 306
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 1 MNVARYDFACAEVNGKIYAVGG-YGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M+V R ++G IYAVGG +G + S E Y+P+ D+W+L+ + R G
Sbjct: 109 MSVPRNRIGVGVIDGHIYAVGGSHGCIHHN--SVERYEPERDEWHLVAPMLTRRIGVGVA 166
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLFCM---- 115
+ LY +GG NS + Y PER+ W +M + + A V C+
Sbjct: 167 VLNRLLYAVGGFDGTNRLNS--AECYYPERNEW-RMITAMNTIRSGAGVCVLHNCIYAAG 223
Query: 116 EWKNQRKLTI---FDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLEE 164
+ Q +L +D E +W V S++G + G DG L S+E
Sbjct: 224 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE- 282
Query: 165 EPSYSTLLYDPNAASGSE 182
YDP+ + SE
Sbjct: 283 -------CYDPDTDTWSE 293
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 17 IYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTI 76
IY GGY +SLS E Y+P W + L+ PR G C G LY +GGR++
Sbjct: 21 IYTAGGYFR--QSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 78
Query: 77 GN--SKFVDVYNPERHTWC--------QMKNGCVMVTAHA-VVGKKLFCMEWKNQRKLTI 125
GN S +D YNP + W + + G ++ H VG C+ + +
Sbjct: 79 GNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVER--- 135
Query: 126 FDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLE 163
++PE + W +V LT +G + G DG L S E
Sbjct: 136 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 181
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGE-SLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
MN R ++ IYA GGY DG+ L+S E YD +T+ W + +R R
Sbjct: 196 MNTIRSGAGVCVLHNCIYAAGGY--DGQDQLNSVERYDVETETWTFVAPMRHHRSALGIT 253
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLF---CME 116
GK+YV+GG T +S V+ Y+P+ TW ++ M + + VG + C +
Sbjct: 254 VHQGKIYVLGGYDGHTFLDS--VECYDPDSDTWSEVTR---MTSGRSGVGVAVTMEPCRK 308
Query: 117 WKNQRKLTIF 126
+Q+ T +
Sbjct: 309 QIDQQNCTCY 318
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 1 MNVARYDFACAEVNGKIYAVGG-YGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M+V R ++G IYAVGG +G S S E Y+P+ D+W+L+ + R G
Sbjct: 102 MSVPRNRIGVGVIDGHIYAVGGSHGCIHHS--SVERYEPERDEWHLVAPMLTRRIGVGVA 159
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW------CQMKNGCVMVTAHAVVGKKLF 113
+ LY +GG NS + Y PER+ W +++G + H +
Sbjct: 160 VLNRLLYAVGGFDGTNRLNS--AECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGG 217
Query: 114 CMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLEEE 165
+ +D E +W V S++G + G DG L S+E
Sbjct: 218 YDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVE-- 275
Query: 166 PSYSTLLYDPNAASGSE 182
YDP++ + SE
Sbjct: 276 ------CYDPDSDTWSE 286
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGM--DGESLSSA-EVYDPDTDKWNLIESLRRPRWGCF 57
+ V R A V G +YAVGG DG + SSA + Y+P T++W+ S+ PR
Sbjct: 51 LQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIG 110
Query: 58 ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAH-----AVVGKKL 112
DG +Y +GG S I +S V+ Y PER W + M+T AV+ + L
Sbjct: 111 VGVIDGHIYAVGG-SHGCIHHSS-VERYEPERDEWHLVAP---MLTRRIGVGVAVLNRLL 165
Query: 113 FCM-EWKNQRKLT---IFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLF 160
+ + + +L + PE N W+M+ T S G + G DG+ L
Sbjct: 166 YAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN 225
Query: 161 SLEE 164
S+E
Sbjct: 226 SVER 229
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M R A +N +YAVGG+ DG + L+SAE Y P+ ++W +I + R G C
Sbjct: 149 MLTRRIGVGVAVLNRLLYAVGGF--DGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVC 206
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC-----QMKNGCVMVTAHAVVGKKLFC 114
+Y GG NS V+ Y+ E TW + + +T H K++
Sbjct: 207 VLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFVAPMRHHRSALGITVHQ---GKIYV 261
Query: 115 MEWKNQR----KLTIFDPEDNSWKMVPVPLTGSSSIGF 148
+ + + +DP+ ++W V +G S +G
Sbjct: 262 LGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGV 299
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 17 IYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTI 76
IY GGY +SLS E Y+P W + L+ PR G C G LY +GGR++
Sbjct: 20 IYTAGGYFR--QSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 77
Query: 77 GN--SKFVDVYNPERHTWC--------QMKNGCVMVTAHA-VVGKKLFCMEWKNQRKLTI 125
GN S +D YNP + W + + G ++ H VG C+ + +
Sbjct: 78 GNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVER--- 134
Query: 126 FDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLE 163
++PE + W +V LT +G + G DG L S E
Sbjct: 135 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 180
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGE-SLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
MN R ++ IYA GGY DG+ L+S E YD +T+ W + +R R
Sbjct: 195 MNTIRSGAGVCVLHNCIYAAGGY--DGQDQLNSVERYDVETETWTFVAPMRHHRSALGIT 252
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQM 95
GK+YV+GG T +S V+ Y+P+ TW ++
Sbjct: 253 VHQGKIYVLGGYDGHTFLDS--VECYDPDSDTWSEV 286
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 1 MNVARYDFACAEVNGKIYAVGG-YGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M+V R ++G IYAVGG +G S S E Y+P+ D+W+L+ + R G
Sbjct: 101 MSVPRNRIGVGVIDGHIYAVGGSHGCIHHS--SVERYEPERDEWHLVAPMLTRRIGVGVA 158
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW------CQMKNGCVMVTAHAVVGKKLF 113
+ LY +GG NS + Y PER+ W +++G + H +
Sbjct: 159 VLNRLLYAVGGFDGTNRLNS--AECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGG 216
Query: 114 CMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLEEE 165
+ +D E +W V S++G + G DG L S+E
Sbjct: 217 YDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVE-- 274
Query: 166 PSYSTLLYDPNAASGSE 182
YDP++ + SE
Sbjct: 275 ------CYDPDSDTWSE 285
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 25/184 (13%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGM--DGESLSSA-EVYDPDTDKWNLIESLRRPRWGCF 57
+ V R A V G +YAVGG DG + SSA + Y+P T++W+ S+ PR
Sbjct: 50 LQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIG 109
Query: 58 ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAH-----AVVGKKL 112
DG +Y +GG S I +S V+ Y PER W + M+T AV+ + L
Sbjct: 110 VGVIDGHIYAVGG-SHGCIHHSS-VERYEPERDEWHLVAP---MLTRRIGVGVAVLNRLL 164
Query: 113 FCM-EWKNQRKLT---IFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLF 160
+ + + +L + PE N W+M+ T S G + G DG+ L
Sbjct: 165 YAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN 224
Query: 161 SLEE 164
S+E
Sbjct: 225 SVER 228
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M R A +N +YAVGG+ DG + L+SAE Y P+ ++W +I + R G C
Sbjct: 148 MLTRRIGVGVAVLNRLLYAVGGF--DGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVC 205
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC-----QMKNGCVMVTAHAVVGKKLFC 114
+Y GG NS V+ Y+ E TW + + +T H K++
Sbjct: 206 VLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFVAPMRHHRSALGITVHQ---GKIYV 260
Query: 115 MEWKNQR----KLTIFDPEDNSWKMVPVPLTGSSSIGF 148
+ + + +DP+ ++W V +G S +G
Sbjct: 261 LGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGV 298
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 71/166 (42%), Gaps = 24/166 (14%)
Query: 17 IYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTI 76
IY GGY +SLS E Y+P W + L+ PR G C G LY +GGR++
Sbjct: 27 IYTAGGYFR--QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 77 GN--SKFVDVYNPERHTWC--------QMKNGCVMVTAHA-VVGKKLFCMEWKNQRKLTI 125
GN S +D YNP + W + + G ++ H VG C+ + +
Sbjct: 85 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVER--- 141
Query: 126 FDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLE 163
++PE + W +V LT +G + G DG L S E
Sbjct: 142 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE 187
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGE-SLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
MN R ++ IYA GGY DG+ L+S E YD +T+ W + ++ R
Sbjct: 202 MNTIRSGAGVCVLHNCIYAAGGY--DGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT 259
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQM 95
G++YV+GG T +S V+ Y+P+ TW ++
Sbjct: 260 VHQGRIYVLGGYDGHTFLDS--VECYDPDTDTWSEV 293
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGM--DGESLSSA-EVYDPDTDKWNLIESLRRPRWGCF 57
+ V R A V G +YAVGG DG + SSA + Y+P T++W+ + PR
Sbjct: 57 LQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 116
Query: 58 ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAH-----AVVGKKL 112
DG +Y +GG NS V+ Y PER W + M+T AV+ + L
Sbjct: 117 VGVIDGHIYAVGGSHGCIHHNS--VERYEPERDEWHLV---APMLTRRIGVGVAVLNRLL 171
Query: 113 FCM-EWKNQRKLT---IFDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLF 160
+ + + +L + PE N W+M+ T S G + G DG+ L
Sbjct: 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN 231
Query: 161 SLEE 164
S+E
Sbjct: 232 SVER 235
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M R A +N +YAVGG+ DG + L+SAE Y P+ ++W +I ++ R G C
Sbjct: 155 MLTRRIGVGVAVLNRLLYAVGGF--DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVC 212
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC-----QMKNGCVMVTAHAVVGKKLFC 114
+Y GG NS V+ Y+ E TW + + + +T H +++
Sbjct: 213 VLHNCIYAAGGYDGQDQLNS--VERYDVETETWTFVAPMKHRRSALGITVHQ---GRIYV 267
Query: 115 MEWKNQR----KLTIFDPEDNSWKMVPVPLTGSSSIGF 148
+ + + +DP+ ++W V +G S +G
Sbjct: 268 LGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGV 305
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 29/198 (14%)
Query: 1 MNVARYDFACAEVNGKIYAVGG-YGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M+V R ++G IYAVGG +G + S E Y+P+ D+W+L+ + R G
Sbjct: 108 MSVPRNRIGVGVIDGHIYAVGGSHGCIHHN--SVERYEPERDEWHLVAPMLTRRIGVGVA 165
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLFCM---- 115
+ LY +GG NS + Y PER+ W +M + + A V C+
Sbjct: 166 VLNRLLYAVGGFDGTNRLNS--AECYYPERNEW-RMITAMNTIRSGAGVCVLHNCIYAAG 222
Query: 116 EWKNQRKLTI---FDPEDNSWKMVPVPLTGSSSIG--------FRFGILDGKLLLFSLEE 164
+ Q +L +D E +W V S++G + G DG L S+E
Sbjct: 223 GYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE- 281
Query: 165 EPSYSTLLYDPNAASGSE 182
YDP+ + SE
Sbjct: 282 -------CYDPDTDTWSE 292
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 4 ARYDFACAEVNGKIYAVGGYGMDGE-SLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFD 62
AR F EV+ KIY V G + E SL S YDP KW+ +++L +G S +
Sbjct: 99 ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHN 158
Query: 63 GKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVG 109
G +Y +GG++ ++ V +YNP++ W K+ M T ++ G
Sbjct: 159 GMIYCLGGKTDDKKCTNR-VFIYNPKKGDW---KDLAPMKTPRSMFG 201
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS 60
M R F A GKI GG DG S +S E +D T+KW ++ + R S
Sbjct: 193 MKTPRSMFGVAIHKGKIVIAGGVTEDGLS-ASVEAFDLKTNKWEVMTEFPQERSSISLVS 251
Query: 61 FDGKLYVMGGRSSFTIGNSKFVDV-------YNPERHTWCQM 95
G LY +GG + + + +F Y ++ W M
Sbjct: 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 2 NVARYDFACAEVNGKIYAVGGYGMDGESLSSA-EVY----DPDTDKWNLIESLRRPRWGC 56
+ R + ++Y VGG +D E+ + Y D + +W + L R
Sbjct: 44 QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103
Query: 57 FACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKK--LFC 114
D K+YV+ G+ T + V Y+P W ++KN + V H V+ ++C
Sbjct: 104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163
Query: 115 MEWKNQRK-----LTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLL 159
+ K K + I++P+ WK + P+ S+ F I GK+++
Sbjct: 164 LGGKTDDKKCTNRVFIYNPKKGDWKDL-APMKTPRSM-FGVAIHKGKIVI 211
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSS 73
NG IY +GG D + + +Y+P W + ++ PR GK+ + GG +
Sbjct: 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTE 217
Query: 74 FTIGNSKFVDVYNPERHTWCQM 95
G S V+ ++ + + W M
Sbjct: 218 --DGLSASVEAFDLKTNKWEVM 237
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 15/150 (10%)
Query: 5 RYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK 64
R A GKIY GG + +L E YD T+ W+ S+ R +G
Sbjct: 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGL 151
Query: 65 LYVMGGRSSFTIGNSKF--VDVYNPERHTWCQMKNGCVMVTAH-----AVVGKKLFCMEW 117
+YV GG + +VY+P TW ++ C M+ A V K+F +
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTEL---CPMIEARKNHGLVFVKDKIFAVGG 208
Query: 118 KNQ----RKLTIFDPEDNSWKMV-PVPLTG 142
+N + +D + N WKMV P+P G
Sbjct: 209 QNGLGGLDNVEYYDIKLNEWKMVSPMPWKG 238
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 5 RYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK 64
R D AC + +Y +GG + + + Y+ D W PR AC+ +GK
Sbjct: 46 RRDAACVFWDNVVYILGGSQL--FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGK 103
Query: 65 LYVMGGRSSFTIGNSK--FVDVYNPERHTWCQMKNGCVMVTAHAVV 108
+Y GG +GNS + Y+ +W + +H +V
Sbjct: 104 IYTSGGSE---VGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV 146
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 27 GESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYN 86
G S ++P W I R +D +Y++GG F I K +D YN
Sbjct: 20 GSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPI---KRMDCYN 76
Query: 87 PERHTW 92
+ +W
Sbjct: 77 VVKDSW 82
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGESL-SSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M+ R +N +YAVGG+ DG + S EVYDP T+ W + + R C
Sbjct: 191 MSTRRSGAGVGVLNNLLYAVGGH--DGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW 92
+ +G LYV+GG N V+ YNP W
Sbjct: 249 AVNGLLYVVGGDDGSC--NLASVEYYNPTTDKW 279
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDG-ESLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
MN R V G +YAVGGY + + LS+ E Y+ T++W I + R G
Sbjct: 142 MNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG 201
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK--NGCVMVTAHAVVGKKLFCMEW 117
+ LY +GG + K V+VY+P + W Q+ N C V L+ +
Sbjct: 202 VLNNLLYAVGGHDGPLV--RKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGG 259
Query: 118 K----NQRKLTIFDPEDNSWKMVPVPL-TGSSSIGFRFGILDGKL 157
N + ++P + W +V + TG S G ++D +L
Sbjct: 260 DDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVT--VIDKRL 302
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M R A +NG +YAVGG+ DG + LSS E Y+ +++W + + R
Sbjct: 95 MRDRRSTLGAAVLNGLLYAVGGF--DGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVG 152
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAH--AVVGKKLFCMEW 117
G LY +GG + V+ YN + W + + V+ L+ +
Sbjct: 153 VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGG 212
Query: 118 KN----QRKLTIFDPEDNSWKMV 136
+ ++ + ++DP N+W+ V
Sbjct: 213 HDGPLVRKSVEVYDPTTNAWRQV 235
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 15 GKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSF 74
G ++AVGG+ + + + YDP D+W + ++R R A +G LY +GG
Sbjct: 62 GLVFAVGGFN-GSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 75 TIGNSKFVDVYNPERHTW 92
T +S V+ YN + + W
Sbjct: 121 TGLSS--VEAYNIKSNEW 136
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 24 GMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGG-RSSFTIGNSKFV 82
G +++ S E YD ++W+ + L R G ++ +GG S + + V
Sbjct: 23 GQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRV---RTV 79
Query: 83 DVYNPERHTWCQMKN 97
D Y+P + W + N
Sbjct: 80 DSYDPVKDQWTSVAN 94
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M R A +N IY VGG+ DG + LSS E Y+ TD W + S+ PR A
Sbjct: 193 MATKRSGAGVALLNDHIYVVGGF--DGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT 250
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW 92
G+LY + G ++ +S ++ Y+P +W
Sbjct: 251 VLRGRLYAIAGYDGNSLLSS--IECYDPIIDSW 281
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDG-ESLSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
MNV R + IY GG+ DG +S E YDP+ D+W+++ ++ R G
Sbjct: 99 MNVRRGLAGATTLGDMIYVSGGF--DGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLV 156
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQM 95
G +Y +GG I NS V+ Y+P W +
Sbjct: 157 VASGVIYCLGGYDGLNILNS--VEKYDPHTGHWTNV 190
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M AR +G IY +GGY DG + L+S E YDP T W + + R G
Sbjct: 146 MQTAREGAGLVVASGVIYCLGGY--DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVA 203
Query: 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGK-----KLFC 114
+ +YV+GG + V+ YN +W + + M T VG +L+
Sbjct: 204 LLNDHIYVVGGFDG--TAHLSSVEAYNIRTDSWTTVTS---MTTPRCYVGATVLRGRLYA 258
Query: 115 MEWKNQRKL----TIFDPEDNSWKMV 136
+ + L +DP +SW++V
Sbjct: 259 IAGYDGNSLLSSIECYDPIIDSWEVV 284
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSS 73
N + VGG+G + E YDP T +W+ + S+ R R + S ++YV+GG
Sbjct: 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDG 73
Query: 74 FT-IGNSKFVDVYNPERHTWCQMKNGCVM--VTAHAVVGKKLFCMEW----KNQRKLTIF 126
+ + + + +D E W + V + +G ++ + + +
Sbjct: 74 RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERY 133
Query: 127 DPEDNSWKMV--------PVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAA 178
DP + W M+ L +S + + G DG +L S+E+ YDP+
Sbjct: 134 DPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEK--------YDPHTG 185
Query: 179 SGSEWQTSKIKPSG 192
+ K SG
Sbjct: 186 HWTNVTPMATKRSG 199
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGESL-SSAEVYDPDTDKWNLIESLRRPRWGCFAC 59
M R + G++YA+ GY DG SL SS E YDP D W ++ S+ R C
Sbjct: 240 MTTPRCYVGATVLRGRLYAIAGY--DGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVC 297
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 3 VAR--YDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS 60
VAR + F N ++ +GG + LS ++D T +W++I+SL R+ ACS
Sbjct: 438 VARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACS 497
Query: 61 F-DGKLYVMGG 70
DG + ++GG
Sbjct: 498 LPDGNVLILGG 508
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 8/99 (8%)
Query: 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS 60
M AR F +G+I G G + SSAEVY +KW E+ + R S
Sbjct: 183 MQTARSLFGATVHDGRIIVAAGVTDTGLT-SSAEVYSITDNKWAPFEAFPQERSSLSLVS 241
Query: 61 FDGKLYVMGGRSSFTIGNSKFVDV-------YNPERHTW 92
G LY +GG ++ + + V YN E W
Sbjct: 242 LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 8 FACAEVNGKIYAVGGYGM-DGES-LSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKL 65
F E IY VGG + DGE L S YD + KW + L +G S +
Sbjct: 92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLV 151
Query: 66 YVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVG 109
YV+GG+ S +K VY+P++ W ++ M TA ++ G
Sbjct: 152 YVIGGKGSDRKCLNKMC-VYDPKKFEWKEL---APMQTARSLFG 191
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 17 IYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTI 76
+Y +GG G D + L+ VYDP +W + ++ R A DG++ V G + +
Sbjct: 151 VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGL 210
Query: 77 GNSKFVDVYNPERHTWC 93
+S +VY+ + W
Sbjct: 211 TSS--AEVYSITDNKWA 225
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 1 MNVARYDFACAEV----NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR-WG 55
+ V ++D C + NG+I GG SL YD +D W ++ R +
Sbjct: 219 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQ 273
Query: 56 CFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV--MVTA 104
A DG+++ +GG S + K +VY+P TW + N V M+TA
Sbjct: 274 SSATMSDGRVFTIGGSGSGGV-FEKNGEVYSPSSKTWTSLPNAKVNPMLTA 323
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 1 MNVARYDFACAEV----NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR-WG 55
+ V ++D C + NG+I GG SL YD +D W ++ R +
Sbjct: 219 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQ 273
Query: 56 CFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV--MVTA 104
A DG+++ +GG S + K +VY+P TW + N V M+TA
Sbjct: 274 SSATMSDGRVFTIGGSHSGGV-FEKNGEVYSPSSKTWTSLPNAKVNPMLTA 323
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 1 MNVARYDFACAEV----NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR-WG 55
+ V ++D C + NG+I GG SL YD +D W ++ R +
Sbjct: 241 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQ 295
Query: 56 CFACSFDGKLYVMGGRSSFTIGN-SKFVDVYNPERHTWCQMKNGCV--MVTA 104
A DG+++ +GG SF+ G K +VY+P TW + N V M+TA
Sbjct: 296 SSATMSDGRVFTIGG--SFSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 345
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 1 MNVARYDFACAEV----NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR-WG 55
+ V ++D C + NG+I GG SL YD +D W ++ R +
Sbjct: 219 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQ 273
Query: 56 CFACSFDGKLYVMGGRSSFTIGN-SKFVDVYNPERHTWCQMKNGCV--MVTA 104
A DG+++ +GG SF+ G K +VY+P TW + N V M+TA
Sbjct: 274 SSATMSDGRVFTIGG--SFSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA 323
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 1 MNVARYDFACAEV----NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR-WG 55
+ V ++D C + NG+I GG SL YD +D W ++ R +
Sbjct: 219 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQ 273
Query: 56 CFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV--MVTA 104
A DG+++ +GG S + K +VY+P TW + N V M+TA
Sbjct: 274 SSATMSDGRVFTIGGSWSGGV-FEKNGEVYSPSSKTWTSLPNAKVNPMLTA 323
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 1 MNVARYDFACAEV----NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR-WG 55
+ V ++D C + NG+I GG SL YD +D W ++ R +
Sbjct: 219 VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQ 273
Query: 56 CFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV--MVTA 104
A DG+++ +GG S + K +VY+P TW + N V M+TA
Sbjct: 274 SSATMSDGRVFTIGGSWSGGV-FEKNGEVYSPSSKTWTSLPNAKVNPMLTA 323
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR-WGCFACSFDGKLYVMGGRS 72
NG+I GG SL YD +D W ++ R + A DG+++ +GG
Sbjct: 253 NGQIVVTGGNDAKKTSL-----YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW 307
Query: 73 SFTIGNSKFVDVYNPERHTWCQMKNGCV--MVTA 104
S + K +VY+P TW + N V M+TA
Sbjct: 308 SGGV-FEKNGEVYSPSSKTWTSLPNAKVNPMLTA 340
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MNVAR-YDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR 50
M VAR Y + +G+++ +GG G + EVY P + W + + +
Sbjct: 283 MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK 333
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At
3.4 Angstrom Resolution
Length = 186
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 21 GGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRW------GCFACSFDGKLYVMGGRSSF 74
G +G D LSS DP++ +WN+ L RW G F F KL ++ S +
Sbjct: 10 GDFGFDPLGLSS----DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWY 65
Query: 75 TIGNSKF 81
T G ++
Sbjct: 66 TAGEQEY 72
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 42 KWNLIESL-RRPRWGCFACSFDGKLYVMGGRSSFTIGNSK-FVDV--YNPERHTWCQM 95
KW + + PR + DG LYV GG + G ++ F DV YNP+ ++W ++
Sbjct: 44 KWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL 101
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 21 GGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRW------GCFACSFDGKLYVMGGRSSF 74
G +G D L S DP++ +WN+ L RW G F F KL ++ S +
Sbjct: 83 GDFGFDPLGLGS----DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWY 138
Query: 75 TIGNSKF 81
T G ++
Sbjct: 139 TAGEQEY 145
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 37 DPDTDKWNLIESLRRPRW------GCFACSFDGKLYVMGGRSSFTIGNSKF 81
DP++ +WN+ L RW G F F KL ++ S +T G ++
Sbjct: 2 DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY 52
>pdb|1WJM|A Chain A, Solution Structure Of Pleckstrin Homology Domain Of Human
Beta Iii Spectrin
Length = 123
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 148 FRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGS 181
F+ G+ DGK LF ++E S+ L NAA S
Sbjct: 85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,989,022
Number of Sequences: 62578
Number of extensions: 295027
Number of successful extensions: 654
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 80
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)