Query 028925
Match_columns 202
No_of_seqs 132 out of 1339
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 100.0 3.4E-38 7.4E-43 259.7 24.1 193 1-200 290-510 (557)
2 KOG4441 Proteins containing BT 100.0 2.9E-38 6.4E-43 259.5 22.2 193 1-200 319-520 (571)
3 KOG4441 Proteins containing BT 100.0 4.1E-37 8.9E-42 252.8 21.8 193 1-200 367-567 (571)
4 PHA02713 hypothetical protein; 100.0 1.1E-35 2.4E-40 244.9 20.0 181 1-188 338-542 (557)
5 PLN02153 epithiospecifier prot 100.0 1.7E-34 3.8E-39 226.1 25.4 195 1-200 19-250 (341)
6 TIGR03548 mutarot_permut cycli 100.0 3.6E-34 7.7E-39 222.9 21.7 192 1-198 59-299 (323)
7 PLN02153 epithiospecifier prot 100.0 2.1E-33 4.5E-38 220.0 24.1 185 6-194 77-304 (341)
8 PHA02790 Kelch-like protein; P 100.0 7.1E-34 1.5E-38 231.1 22.1 169 1-186 305-477 (480)
9 PHA03098 kelch-like protein; P 100.0 1.4E-33 3E-38 233.0 22.7 188 1-195 329-527 (534)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 7.7E-33 1.7E-37 217.3 22.7 196 1-199 49-318 (346)
11 PLN02193 nitrile-specifier pro 100.0 2.4E-32 5.2E-37 221.6 25.8 195 1-200 162-376 (470)
12 TIGR03547 muta_rot_YjhT mutatr 100.0 2.4E-32 5.3E-37 214.5 24.1 184 1-193 4-241 (346)
13 PHA03098 kelch-like protein; P 100.0 1.8E-32 3.9E-37 226.4 22.9 187 5-198 285-483 (534)
14 PHA02790 Kelch-like protein; P 100.0 3.1E-32 6.7E-37 221.5 22.7 173 10-199 267-443 (480)
15 PLN02193 nitrile-specifier pro 100.0 7.3E-32 1.6E-36 218.8 24.5 184 5-194 219-431 (470)
16 PRK14131 N-acetylneuraminic ac 100.0 4.5E-31 9.7E-36 209.2 22.2 195 1-198 70-339 (376)
17 PRK14131 N-acetylneuraminic ac 100.0 2.7E-30 5.9E-35 204.7 23.7 184 1-193 25-262 (376)
18 TIGR03548 mutarot_permut cycli 100.0 4.5E-30 9.8E-35 199.9 24.0 181 3-189 2-204 (323)
19 KOG4693 Uncharacterized conser 100.0 9.3E-31 2E-35 189.4 15.4 196 2-200 76-301 (392)
20 KOG0379 Kelch repeat-containin 100.0 7E-27 1.5E-31 189.6 21.7 194 2-199 58-272 (482)
21 KOG1230 Protein containing rep 100.0 4.7E-27 1E-31 178.9 17.5 200 2-201 64-305 (521)
22 KOG4693 Uncharacterized conser 100.0 7.7E-27 1.7E-31 169.1 16.1 191 4-198 13-246 (392)
23 KOG0379 Kelch repeat-containin 99.9 1.1E-25 2.3E-30 182.7 20.5 181 2-186 110-308 (482)
24 KOG1230 Protein containing rep 99.9 1.5E-22 3.3E-27 154.4 14.6 182 2-186 119-347 (521)
25 KOG4152 Host cell transcriptio 99.9 7.8E-21 1.7E-25 148.9 14.2 197 2-201 79-332 (830)
26 KOG4152 Host cell transcriptio 99.8 5E-19 1.1E-23 138.9 12.0 194 2-201 30-264 (830)
27 COG3055 Uncharacterized protei 99.8 2.5E-17 5.3E-22 124.3 14.4 186 1-194 33-270 (381)
28 COG3055 Uncharacterized protei 99.7 3.5E-16 7.6E-21 118.1 15.6 191 3-198 81-345 (381)
29 PF13964 Kelch_6: Kelch motif 99.6 1E-15 2.3E-20 86.1 6.5 50 4-53 1-50 (50)
30 PF01344 Kelch_1: Kelch motif; 99.5 4.3E-14 9.3E-19 78.5 4.8 47 4-50 1-47 (47)
31 KOG2437 Muskelin [Signal trans 99.4 2.1E-13 4.6E-18 107.3 3.7 162 2-164 258-457 (723)
32 PF13418 Kelch_4: Galactose ox 99.4 5E-13 1.1E-17 74.8 4.1 47 4-50 1-48 (49)
33 PF07646 Kelch_2: Kelch motif; 99.4 2.7E-12 5.8E-17 71.7 6.1 47 4-50 1-49 (49)
34 PF13415 Kelch_3: Galactose ox 99.4 2.8E-12 6.1E-17 71.6 6.0 48 14-61 1-49 (49)
35 PF13964 Kelch_6: Kelch motif 99.3 1.2E-11 2.6E-16 69.4 6.0 48 52-100 1-48 (50)
36 PF01344 Kelch_1: Kelch motif; 99.2 3.1E-11 6.6E-16 66.8 5.0 47 52-99 1-47 (47)
37 smart00612 Kelch Kelch domain. 99.2 3.8E-11 8.2E-16 66.4 5.1 47 16-63 1-47 (47)
38 PF07646 Kelch_2: Kelch motif; 99.1 2.5E-10 5.5E-15 63.6 6.4 47 52-98 1-48 (49)
39 PF13854 Kelch_5: Kelch motif 99.1 3.3E-10 7.2E-15 60.9 5.6 40 1-40 1-41 (42)
40 PLN02772 guanylate kinase 99.1 1.9E-09 4.1E-14 84.6 10.6 83 3-89 23-109 (398)
41 PF07250 Glyoxal_oxid_N: Glyox 99.0 2.8E-08 6E-13 73.7 15.7 172 8-192 2-211 (243)
42 KOG2437 Muskelin [Signal trans 99.0 5.6E-10 1.2E-14 88.4 5.9 133 50-187 258-420 (723)
43 PF13418 Kelch_4: Galactose ox 99.0 8.8E-10 1.9E-14 61.5 4.3 47 52-99 1-48 (49)
44 PF13415 Kelch_3: Galactose ox 98.8 1.7E-08 3.8E-13 56.1 5.5 43 154-199 1-47 (49)
45 PF13854 Kelch_5: Kelch motif 98.6 1.1E-07 2.4E-12 51.0 5.3 41 49-89 1-41 (42)
46 PLN02772 guanylate kinase 98.6 5.5E-07 1.2E-11 70.9 10.2 79 99-177 24-109 (398)
47 TIGR01640 F_box_assoc_1 F-box 98.6 1.5E-05 3.3E-10 59.2 17.6 151 31-186 14-184 (230)
48 PF07250 Glyoxal_oxid_N: Glyox 98.6 2.3E-06 5E-11 63.6 11.9 112 14-137 77-206 (243)
49 smart00612 Kelch Kelch domain. 98.5 2.5E-07 5.4E-12 50.7 3.9 40 156-198 1-42 (47)
50 PF03089 RAG2: Recombination a 98.3 0.00017 3.7E-09 54.0 16.3 118 1-118 19-173 (337)
51 TIGR01640 F_box_assoc_1 F-box 98.3 0.00017 3.6E-09 53.7 16.5 145 31-178 70-230 (230)
52 PF07893 DUF1668: Protein of u 98.2 0.0001 2.3E-09 58.0 15.2 118 13-137 75-215 (342)
53 PF07893 DUF1668: Protein of u 98.0 0.0041 9E-08 49.1 19.0 113 61-187 75-215 (342)
54 PRK11138 outer membrane biogen 97.8 0.011 2.3E-07 47.7 18.8 154 9-185 64-231 (394)
55 PF12768 Rax2: Cortical protei 97.6 0.0079 1.7E-07 46.0 15.2 120 17-138 1-130 (281)
56 PF12768 Rax2: Cortical protei 97.6 0.0042 9E-08 47.5 12.9 106 78-188 14-130 (281)
57 PF08450 SGL: SMP-30/Gluconola 97.4 0.027 5.8E-07 42.2 16.8 158 14-187 51-221 (246)
58 PRK11138 outer membrane biogen 97.3 0.04 8.7E-07 44.4 16.7 126 10-161 252-383 (394)
59 TIGR03300 assembly_YfgL outer 97.3 0.068 1.5E-06 42.7 18.6 151 9-185 60-216 (377)
60 PF03089 RAG2: Recombination a 97.2 0.019 4.1E-07 43.4 12.5 97 97-195 85-209 (337)
61 TIGR03300 assembly_YfgL outer 97.1 0.084 1.8E-06 42.2 16.3 125 11-161 238-368 (377)
62 PF13360 PQQ_2: PQQ-like domai 97.1 0.07 1.5E-06 39.4 18.9 137 32-186 4-149 (238)
63 PF05096 Glu_cyclase_2: Glutam 97.1 0.072 1.6E-06 40.3 14.4 148 13-178 54-205 (264)
64 PF13360 PQQ_2: PQQ-like domai 96.8 0.14 2.9E-06 37.9 20.6 150 12-186 34-200 (238)
65 PF03178 CPSF_A: CPSF A subuni 96.7 0.12 2.5E-06 40.5 13.7 150 15-176 42-204 (321)
66 KOG2055 WD40 repeat protein [G 96.6 0.11 2.4E-06 41.8 13.0 133 31-177 280-418 (514)
67 TIGR02800 propeller_TolB tol-p 96.5 0.36 7.7E-06 39.0 18.0 144 31-186 214-361 (417)
68 PF05096 Glu_cyclase_2: Glutam 96.5 0.2 4.4E-06 37.9 12.8 103 61-177 54-158 (264)
69 KOG2055 WD40 repeat protein [G 96.3 0.1 2.2E-06 42.0 11.0 153 14-186 224-385 (514)
70 PF08450 SGL: SMP-30/Gluconola 96.3 0.3 6.6E-06 36.5 15.7 138 14-178 11-166 (246)
71 PRK04792 tolB translocation pr 96.2 0.54 1.2E-05 38.7 17.8 144 31-186 242-389 (448)
72 cd00216 PQQ_DH Dehydrogenases 96.2 0.61 1.3E-05 38.9 18.9 114 8-136 55-192 (488)
73 PF08268 FBA_3: F-box associat 96.0 0.15 3.3E-06 34.2 9.4 78 106-186 2-87 (129)
74 PRK04922 tolB translocation pr 96.0 0.71 1.5E-05 37.8 17.4 144 31-186 228-375 (433)
75 cd00094 HX Hemopexin-like repe 95.9 0.4 8.7E-06 34.7 17.1 141 11-178 13-177 (194)
76 TIGR03866 PQQ_ABC_repeats PQQ- 95.9 0.55 1.2E-05 35.5 16.9 102 15-132 1-106 (300)
77 TIGR03866 PQQ_ABC_repeats PQQ- 95.7 0.63 1.4E-05 35.2 17.6 144 15-178 43-189 (300)
78 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 1.2 2.5E-05 37.6 16.3 114 9-137 64-199 (527)
79 PRK00178 tolB translocation pr 95.6 0.99 2.2E-05 36.8 18.1 144 31-186 223-370 (430)
80 KOG1036 Mitotic spindle checkp 95.6 0.78 1.7E-05 35.2 15.0 129 14-159 64-203 (323)
81 smart00284 OLF Olfactomedin-li 95.5 0.77 1.7E-05 34.7 16.1 160 1-176 70-252 (255)
82 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 0.92 2E-05 38.2 14.1 118 57-185 64-197 (527)
83 PRK05137 tolB translocation pr 95.1 1.5 3.3E-05 35.8 17.5 139 31-178 226-368 (435)
84 PLN03215 ascorbic acid mannose 95.1 1.1 2.4E-05 35.9 12.4 97 89-191 189-306 (373)
85 PF03178 CPSF_A: CPSF A subuni 95.0 1.3 2.8E-05 34.6 16.2 105 80-194 62-174 (321)
86 PF10282 Lactonase: Lactonase, 94.9 1.5 3.2E-05 34.8 16.0 162 8-187 147-332 (345)
87 KOG0310 Conserved WD40 repeat- 94.9 1.7 3.8E-05 35.4 13.2 107 12-132 77-187 (487)
88 PF08268 FBA_3: F-box associat 94.9 0.71 1.5E-05 30.9 11.5 83 11-96 2-88 (129)
89 PTZ00421 coronin; Provisional 94.7 2.1 4.7E-05 35.8 17.6 143 16-178 139-292 (493)
90 KOG0281 Beta-TrCP (transducin 94.7 0.74 1.6E-05 36.2 10.2 92 60-163 327-418 (499)
91 PRK13684 Ycf48-like protein; P 94.6 1.8 3.9E-05 34.2 16.0 125 37-177 200-332 (334)
92 KOG0315 G-protein beta subunit 94.5 1.5 3.3E-05 32.9 12.0 105 31-142 61-167 (311)
93 COG4257 Vgb Streptogramin lyas 94.5 1.6 3.6E-05 33.3 13.7 115 60-189 197-315 (353)
94 PRK03629 tolB translocation pr 94.4 2.3 5E-05 34.8 17.8 145 31-187 223-371 (429)
95 KOG2321 WD40 repeat protein [G 94.3 0.57 1.2E-05 39.1 9.4 116 3-132 132-261 (703)
96 PF02191 OLF: Olfactomedin-lik 94.0 2 4.3E-05 32.5 15.6 159 2-175 66-246 (250)
97 PLN02919 haloacid dehalogenase 93.7 5.8 0.00013 36.6 18.9 148 14-178 694-890 (1057)
98 PRK05137 tolB translocation pr 93.7 3.4 7.3E-05 33.9 18.0 163 13-186 164-329 (435)
99 COG2706 3-carboxymuconate cycl 93.6 2.9 6.3E-05 32.9 17.0 145 31-187 167-331 (346)
100 COG1520 FOG: WD40-like repeat 93.6 3.1 6.8E-05 33.2 17.6 154 11-185 65-225 (370)
101 cd00094 HX Hemopexin-like repe 93.5 2.1 4.4E-05 31.0 11.8 106 7-132 54-178 (194)
102 KOG0296 Angio-associated migra 93.2 3.4 7.5E-05 32.7 17.3 144 14-178 75-222 (399)
103 PRK11028 6-phosphogluconolacto 93.1 3.4 7.3E-05 32.3 13.9 143 16-177 3-157 (330)
104 KOG0266 WD40 repeat-containing 93.0 4.6 0.0001 33.4 15.2 149 14-178 257-411 (456)
105 PF02897 Peptidase_S9_N: Proly 93.0 4.2 9.1E-05 33.0 17.3 145 30-186 251-411 (414)
106 PLN00181 protein SPA1-RELATED; 92.9 6.6 0.00014 35.0 16.5 61 62-130 629-691 (793)
107 PRK04792 tolB translocation pr 92.8 4.8 0.0001 33.2 18.3 143 31-186 286-431 (448)
108 PF06433 Me-amine-dh_H: Methyl 92.8 3.1 6.8E-05 32.8 10.8 154 12-178 104-279 (342)
109 PRK04043 tolB translocation pr 92.7 4.8 0.0001 32.9 16.3 143 31-186 213-364 (419)
110 cd00200 WD40 WD40 domain, foun 92.7 3 6.5E-05 30.6 15.3 131 31-178 73-209 (289)
111 PTZ00421 coronin; Provisional 92.2 6.3 0.00014 33.1 17.4 62 63-132 138-201 (493)
112 PLN00033 photosystem II stabil 91.6 6.5 0.00014 32.0 15.2 114 36-161 265-388 (398)
113 PRK02889 tolB translocation pr 91.6 6.7 0.00014 32.1 17.4 144 31-186 220-367 (427)
114 KOG2048 WD40 repeat protein [G 91.1 8.6 0.00019 33.0 12.1 156 12-186 391-558 (691)
115 TIGR02800 propeller_TolB tol-p 91.0 7.3 0.00016 31.5 17.3 101 31-137 258-362 (417)
116 PF06433 Me-amine-dh_H: Methyl 89.9 1.1 2.4E-05 35.3 5.8 72 14-93 249-325 (342)
117 PF14870 PSII_BNR: Photosynthe 89.7 8.2 0.00018 30.1 15.6 118 34-162 169-294 (302)
118 cd00216 PQQ_DH Dehydrogenases 89.6 11 0.00024 31.5 15.1 118 32-160 312-454 (488)
119 PRK01742 tolB translocation pr 89.3 11 0.00023 30.9 13.9 138 31-186 228-368 (429)
120 TIGR03074 PQQ_membr_DH membran 89.2 16 0.00034 32.6 18.5 32 105-136 312-353 (764)
121 PRK13684 Ycf48-like protein; P 88.9 10 0.00022 30.0 18.3 136 33-187 154-296 (334)
122 KOG0316 Conserved WD40 repeat- 88.5 8.7 0.00019 28.8 10.9 144 16-178 114-259 (307)
123 TIGR03074 PQQ_membr_DH membran 88.3 18 0.00039 32.2 15.7 74 108-185 259-352 (764)
124 PRK00178 tolB translocation pr 88.2 13 0.00028 30.4 18.1 101 80-186 223-326 (430)
125 KOG0291 WD40-repeat-containing 87.8 18 0.0004 31.7 17.7 145 12-177 359-509 (893)
126 KOG1332 Vesicle coat complex C 87.8 8.6 0.00019 29.0 8.8 99 16-137 176-295 (299)
127 PRK04922 tolB translocation pr 86.8 16 0.00034 30.0 17.6 101 80-186 228-331 (433)
128 PF13859 BNR_3: BNR repeat-lik 86.8 13 0.00029 29.1 15.2 178 9-190 3-217 (310)
129 PRK03629 tolB translocation pr 86.4 17 0.00037 29.8 18.4 139 31-178 267-408 (429)
130 cd00200 WD40 WD40 domain, foun 86.2 11 0.00024 27.5 16.8 145 14-178 20-167 (289)
131 PF12217 End_beta_propel: Cata 86.1 13 0.00029 28.3 13.8 109 7-117 138-257 (367)
132 PRK04043 tolB translocation pr 84.8 20 0.00044 29.4 18.3 136 31-178 257-402 (419)
133 KOG0289 mRNA splicing factor [ 84.7 20 0.00044 29.3 13.7 113 8-137 351-470 (506)
134 PF10282 Lactonase: Lactonase, 84.5 18 0.0004 28.6 17.0 160 14-186 48-231 (345)
135 KOG2321 WD40 repeat protein [G 83.5 20 0.00043 30.5 9.8 106 62-178 145-260 (703)
136 KOG0640 mRNA cleavage stimulat 83.5 20 0.00043 28.1 9.3 64 62-133 227-295 (430)
137 PF14870 PSII_BNR: Photosynthe 83.5 19 0.00042 28.1 18.9 156 8-189 20-184 (302)
138 COG4257 Vgb Streptogramin lyas 83.2 19 0.00041 27.8 15.3 139 32-186 125-269 (353)
139 COG4447 Uncharacterized protei 83.2 16 0.00034 28.2 8.5 111 9-137 49-164 (339)
140 KOG0291 WD40-repeat-containing 82.8 33 0.00072 30.3 16.2 135 30-178 329-468 (893)
141 KOG0263 Transcription initiati 82.5 24 0.00053 30.7 10.2 106 61-177 544-650 (707)
142 COG4946 Uncharacterized protei 81.3 30 0.00066 28.8 14.8 134 31-178 287-433 (668)
143 PRK10115 protease 2; Provision 80.3 41 0.00088 29.7 17.1 145 31-187 247-402 (686)
144 KOG0310 Conserved WD40 repeat- 80.1 33 0.00071 28.4 13.4 130 12-163 163-299 (487)
145 PF13570 PQQ_3: PQQ-like domai 79.9 6.3 0.00014 20.1 4.6 26 103-130 15-40 (40)
146 KOG0281 Beta-TrCP (transducin 79.3 15 0.00032 29.2 7.4 88 31-128 340-427 (499)
147 PF02191 OLF: Olfactomedin-lik 79.0 26 0.00056 26.6 14.9 149 13-178 29-205 (250)
148 PLN02919 haloacid dehalogenase 78.8 57 0.0012 30.4 20.6 148 14-178 579-772 (1057)
149 PLN00033 photosystem II stabil 78.7 34 0.00075 27.9 15.9 129 39-186 73-214 (398)
150 PRK11028 6-phosphogluconolacto 78.5 29 0.00064 27.0 17.2 80 110-194 240-321 (330)
151 PF09910 DUF2139: Uncharacteri 76.8 34 0.00073 26.7 14.9 148 7-160 39-219 (339)
152 KOG0649 WD40 repeat protein [G 76.2 32 0.00068 26.1 14.7 126 14-162 126-263 (325)
153 PTZ00420 coronin; Provisional 75.5 52 0.0011 28.3 17.9 61 16-91 139-200 (568)
154 TIGR02658 TTQ_MADH_Hv methylam 74.9 42 0.00091 26.9 11.7 72 62-134 259-335 (352)
155 PTZ00420 coronin; Provisional 74.5 56 0.0012 28.1 17.3 95 80-177 148-249 (568)
156 COG4946 Uncharacterized protei 73.7 52 0.0011 27.5 15.2 15 169-186 288-302 (668)
157 PF07734 FBA_1: F-box associat 73.6 28 0.0006 24.2 9.3 78 106-186 2-90 (164)
158 PF12217 End_beta_propel: Cata 73.6 39 0.00084 25.9 18.9 155 7-164 77-259 (367)
159 KOG2048 WD40 repeat protein [G 73.5 61 0.0013 28.1 11.5 100 14-129 440-548 (691)
160 PLN00181 protein SPA1-RELATED; 72.3 73 0.0016 28.5 17.7 128 31-176 555-690 (793)
161 KOG0279 G protein beta subunit 72.2 43 0.00093 25.9 13.9 65 60-132 201-265 (315)
162 KOG0278 Serine/threonine kinas 72.1 27 0.00058 26.6 6.8 51 14-72 235-288 (334)
163 COG3386 Gluconolactonase [Carb 70.9 49 0.0011 26.0 15.2 148 7-164 114-277 (307)
164 PRK02889 tolB translocation pr 70.7 58 0.0012 26.7 16.4 145 31-186 176-323 (427)
165 PF09910 DUF2139: Uncharacteri 70.3 50 0.0011 25.9 15.0 103 14-129 117-230 (339)
166 KOG0271 Notchless-like WD40 re 69.8 59 0.0013 26.4 12.8 139 14-177 126-277 (480)
167 KOG4378 Nuclear protein COP1 [ 69.1 59 0.0013 27.4 8.7 59 61-129 219-280 (673)
168 COG1520 FOG: WD40-like repeat 68.8 58 0.0013 26.0 14.4 129 39-185 43-179 (370)
169 KOG0315 G-protein beta subunit 66.7 55 0.0012 25.0 12.7 134 31-178 146-290 (311)
170 KOG0263 Transcription initiati 65.9 94 0.002 27.4 11.0 105 12-129 543-649 (707)
171 PF14781 BBS2_N: Ciliary BBSom 65.4 40 0.00088 22.9 8.7 55 110-178 64-127 (136)
172 KOG0316 Conserved WD40 repeat- 64.7 59 0.0013 24.6 14.5 135 31-178 39-175 (307)
173 KOG0308 Conserved WD40 repeat- 64.1 99 0.0021 26.9 10.6 67 12-91 127-204 (735)
174 TIGR02658 TTQ_MADH_Hv methylam 63.9 75 0.0016 25.5 17.0 29 12-45 114-142 (352)
175 KOG0772 Uncharacterized conser 62.0 55 0.0012 27.6 7.3 117 4-137 316-451 (641)
176 smart00284 OLF Olfactomedin-li 62.0 69 0.0015 24.4 16.0 149 14-178 34-210 (255)
177 PLN03215 ascorbic acid mannose 61.5 86 0.0019 25.4 14.0 80 9-96 204-302 (373)
178 PF08950 DUF1861: Protein of u 61.2 40 0.00087 26.0 6.1 59 12-71 34-95 (298)
179 KOG0305 Anaphase promoting com 60.7 1E+02 0.0022 26.0 12.8 68 109-178 311-378 (484)
180 KOG0279 G protein beta subunit 60.6 77 0.0017 24.5 16.5 93 80-178 127-224 (315)
181 PF09826 Beta_propel: Beta pro 60.4 1.1E+02 0.0023 26.1 16.1 145 30-176 247-410 (521)
182 KOG0266 WD40 repeat-containing 59.3 1E+02 0.0022 25.6 16.1 95 31-134 225-323 (456)
183 KOG2111 Uncharacterized conser 59.2 87 0.0019 24.7 15.0 106 15-133 59-171 (346)
184 KOG0647 mRNA export protein (c 59.1 86 0.0019 24.6 11.6 52 31-89 94-146 (347)
185 KOG0289 mRNA splicing factor [ 59.1 1E+02 0.0022 25.5 12.4 122 53-193 348-476 (506)
186 COG2706 3-carboxymuconate cycl 58.5 93 0.002 24.8 18.2 159 15-186 52-230 (346)
187 KOG1332 Vesicle coat complex C 56.8 86 0.0019 23.9 10.5 72 111-188 223-296 (299)
188 KOG0282 mRNA splicing factor [ 56.7 82 0.0018 26.2 7.4 59 62-128 269-329 (503)
189 PF08662 eIF2A: Eukaryotic tra 56.2 73 0.0016 22.9 7.0 64 109-177 71-134 (194)
190 PRK10115 protease 2; Provision 56.0 1.5E+02 0.0032 26.3 18.3 147 31-187 199-354 (686)
191 KOG0649 WD40 repeat protein [G 55.8 90 0.0019 23.8 13.1 86 43-136 101-193 (325)
192 KOG0318 WD40 repeat stress pro 55.4 1.3E+02 0.0028 25.6 14.9 67 105-177 450-518 (603)
193 KOG3881 Uncharacterized conser 54.9 80 0.0017 25.6 7.0 63 64-132 162-237 (412)
194 KOG0305 Anaphase promoting com 53.2 1.4E+02 0.003 25.2 12.0 95 61-162 354-450 (484)
195 PRK01742 tolB translocation pr 52.1 1.3E+02 0.0029 24.6 17.4 118 31-163 272-391 (429)
196 COG0823 TolB Periplasmic compo 51.6 1.4E+02 0.003 24.7 12.3 115 62-186 248-366 (425)
197 KOG0639 Transducin-like enhanc 50.7 94 0.002 26.3 7.0 66 14-92 476-543 (705)
198 PF04616 Glyco_hydro_43: Glyco 50.5 1.1E+02 0.0023 23.2 14.5 153 6-161 11-196 (286)
199 PF13088 BNR_2: BNR repeat-lik 49.4 58 0.0013 24.5 5.6 65 2-67 205-275 (275)
200 KOG1896 mRNA cleavage and poly 49.2 2.4E+02 0.0053 26.8 10.1 112 58-178 1103-1217(1366)
201 KOG0299 U3 snoRNP-associated p 49.0 1.6E+02 0.0034 24.6 11.5 132 12-164 211-347 (479)
202 TIGR02608 delta_60_rpt delta-6 47.2 46 0.001 18.7 3.5 28 60-87 9-36 (55)
203 KOG0282 mRNA splicing factor [ 46.8 1.7E+02 0.0038 24.5 8.6 22 15-42 312-333 (503)
204 KOG0293 WD40 repeat-containing 46.6 1.7E+02 0.0036 24.2 11.1 93 33-134 293-389 (519)
205 COG3391 Uncharacterized conser 46.6 1.6E+02 0.0034 23.9 16.6 150 13-178 84-241 (381)
206 PF03088 Str_synth: Strictosid 46.5 71 0.0015 19.9 5.0 50 78-128 35-86 (89)
207 KOG3545 Olfactomedin and relat 46.4 1.3E+02 0.0028 22.9 12.4 150 2-161 65-236 (249)
208 KOG3669 Uncharacterized conser 46.2 2E+02 0.0043 24.9 12.6 51 35-96 212-269 (705)
209 KOG0292 Vesicle coat complex C 45.7 2.5E+02 0.0054 25.9 14.5 126 16-177 219-349 (1202)
210 KOG1963 WD40 repeat protein [G 45.5 2.2E+02 0.0048 25.6 8.7 94 30-130 431-539 (792)
211 KOG1445 Tumor-specific antigen 45.4 2.2E+02 0.0047 25.2 8.7 101 31-137 742-852 (1012)
212 KOG0286 G-protein beta subunit 45.0 1.5E+02 0.0033 23.3 15.6 103 14-131 108-219 (343)
213 KOG1036 Mitotic spindle checkp 44.3 1.6E+02 0.0034 23.2 12.2 90 80-178 75-165 (323)
214 PF15525 DUF4652: Domain of un 44.1 1.2E+02 0.0027 22.0 9.9 76 22-98 79-158 (200)
215 COG3823 Glutamine cyclotransfe 44.0 1.3E+02 0.0029 22.4 8.3 57 9-69 50-107 (262)
216 KOG0293 WD40 repeat-containing 42.4 2E+02 0.0043 23.8 9.7 142 14-178 323-472 (519)
217 PF14339 DUF4394: Domain of un 41.1 1.5E+02 0.0034 22.3 7.3 65 12-91 36-106 (236)
218 KOG0274 Cdc4 and related F-box 41.0 2.3E+02 0.0051 24.3 16.4 141 15-178 261-402 (537)
219 PF13088 BNR_2: BNR repeat-lik 40.6 1.6E+02 0.0034 22.1 12.1 144 11-159 115-275 (275)
220 COG3386 Gluconolactonase [Carb 40.5 1.8E+02 0.0039 22.9 18.9 139 32-177 86-244 (307)
221 KOG4378 Nuclear protein COP1 [ 40.2 2.3E+02 0.0051 24.1 11.4 64 106-177 217-281 (673)
222 KOG0295 WD40 repeat-containing 40.1 2E+02 0.0043 23.3 14.2 84 80-167 314-399 (406)
223 PF02897 Peptidase_S9_N: Proly 39.8 2E+02 0.0044 23.2 18.2 141 30-176 201-357 (414)
224 smart00564 PQQ beta-propeller 39.7 45 0.00097 15.6 4.5 24 107-132 4-27 (33)
225 PF07443 HARP: HepA-related pr 39.6 12 0.00027 21.0 0.4 12 34-45 21-32 (55)
226 KOG3545 Olfactomedin and relat 38.8 1.7E+02 0.0038 22.2 9.0 92 81-186 11-106 (249)
227 PF14830 Haemocyan_bet_s: Haem 38.5 31 0.00067 22.2 2.1 28 12-39 34-61 (103)
228 KOG0306 WD40-repeat-containing 38.1 3E+02 0.0065 24.7 9.2 66 58-131 379-444 (888)
229 KOG0274 Cdc4 and related F-box 37.0 2.7E+02 0.0059 23.9 13.5 145 12-178 338-484 (537)
230 KOG1446 Histone H3 (Lys4) meth 35.9 2.2E+02 0.0047 22.4 15.2 16 31-46 122-137 (311)
231 PF14298 DUF4374: Domain of un 35.9 1.6E+02 0.0036 24.4 6.3 60 30-92 366-428 (435)
232 KOG0640 mRNA cleavage stimulat 35.5 2.3E+02 0.0049 22.6 8.6 136 31-177 238-384 (430)
233 cd01178 IPT_NFAT IPT domain of 35.1 1.2E+02 0.0027 19.5 4.4 42 149-190 12-53 (101)
234 smart00155 PLDc Phospholipase 35.0 53 0.0011 15.1 3.0 20 5-24 4-23 (28)
235 cd01206 Homer Homer type EVH1 34.8 1.3E+02 0.0029 19.6 6.0 63 120-185 10-79 (111)
236 PF02239 Cytochrom_D1: Cytochr 34.2 2.5E+02 0.0054 22.7 13.2 147 14-178 48-204 (369)
237 COG0823 TolB Periplasmic compo 34.1 2.7E+02 0.0059 23.1 12.9 102 30-137 261-367 (425)
238 TIGR02604 Piru_Ver_Nterm putat 33.9 2.5E+02 0.0054 22.5 13.9 100 81-186 48-179 (367)
239 PF03022 MRJP: Major royal jel 33.2 2.3E+02 0.005 21.9 13.0 94 62-158 11-124 (287)
240 PF07734 FBA_1: F-box associat 33.1 1.7E+02 0.0036 20.3 11.5 81 11-96 2-91 (164)
241 PF13540 RCC1_2: Regulator of 32.9 62 0.0013 15.3 2.9 17 6-22 8-25 (30)
242 PF11768 DUF3312: Protein of u 32.6 3.2E+02 0.007 23.5 11.8 86 81-176 237-329 (545)
243 KOG0639 Transducin-like enhanc 31.6 3.3E+02 0.0072 23.3 8.1 31 105-136 472-502 (705)
244 KOG1898 Splicing factor 3b, su 31.4 4.5E+02 0.0098 24.8 14.7 160 30-198 852-1025(1205)
245 KOG0318 WD40 repeat stress pro 31.3 3.4E+02 0.0073 23.3 14.8 132 14-163 454-592 (603)
246 KOG0296 Angio-associated migra 31.2 2.9E+02 0.0062 22.4 12.3 105 11-132 114-223 (399)
247 KOG1538 Uncharacterized conser 29.9 2.4E+02 0.0051 25.1 6.4 49 14-72 24-74 (1081)
248 PF06058 DCP1: Dcp1-like decap 29.7 49 0.0011 22.0 2.1 17 31-47 29-45 (122)
249 COG4447 Uncharacterized protei 28.7 2.9E+02 0.0063 21.7 7.9 128 41-186 32-163 (339)
250 PF14298 DUF4374: Domain of un 28.7 3.3E+02 0.0071 22.7 6.9 59 120-178 366-426 (435)
251 smart00120 HX Hemopexin-like r 28.6 91 0.002 15.8 3.6 19 14-40 9-27 (45)
252 PF08662 eIF2A: Eukaryotic tra 28.2 2.3E+02 0.0049 20.3 11.7 65 14-90 71-135 (194)
253 KOG0650 WD40 repeat nucleolar 27.9 4.2E+02 0.009 23.2 10.2 122 30-164 545-681 (733)
254 PF00614 PLDc: Phospholipase D 27.6 47 0.001 15.7 1.3 18 7-24 6-23 (28)
255 TIGR03118 PEPCTERM_chp_1 conse 27.3 3.2E+02 0.0069 21.7 9.8 94 79-178 161-281 (336)
256 KOG1446 Histone H3 (Lys4) meth 27.3 3.1E+02 0.0068 21.6 13.1 12 80-91 122-133 (311)
257 KOG0306 WD40-repeat-containing 27.1 4.7E+02 0.01 23.6 8.9 67 9-91 378-445 (888)
258 KOG2315 Predicted translation 26.7 4.1E+02 0.009 22.8 10.2 23 109-131 323-346 (566)
259 PF01011 PQQ: PQQ enzyme repea 26.0 98 0.0021 15.4 4.4 25 111-137 2-28 (38)
260 KOG1897 Damage-specific DNA bi 25.6 5.6E+02 0.012 24.0 13.3 136 15-161 787-930 (1096)
261 PF09816 EAF: RNA polymerase I 25.1 1.4E+02 0.0029 19.3 3.6 28 17-44 65-92 (109)
262 PF07433 DUF1513: Protein of u 24.7 3.5E+02 0.0077 21.3 18.5 87 2-96 2-92 (305)
263 TIGR02594 conserved hypothetic 24.4 1.1E+02 0.0023 20.6 3.0 19 155-173 101-119 (129)
264 KOG0278 Serine/threonine kinas 23.9 3.4E+02 0.0075 20.9 13.5 122 31-164 165-288 (334)
265 KOG1428 Inhibitor of type V ad 23.7 3.7E+02 0.0081 26.9 6.9 46 61-116 496-542 (3738)
266 KOG4499 Ca2+-binding protein R 23.5 3.4E+02 0.0074 20.8 7.2 45 147-198 216-260 (310)
267 PF06079 Apyrase: Apyrase; In 22.9 3.8E+02 0.0082 21.0 6.2 54 54-116 55-117 (291)
268 PRK11408 hypothetical protein; 22.7 1.5E+02 0.0031 20.5 3.3 33 61-96 31-63 (145)
269 PRK09965 3-phenylpropionate di 22.1 2.1E+02 0.0046 18.1 4.0 36 32-68 65-100 (106)
270 PRK09511 nirD nitrite reductas 21.8 1.6E+02 0.0035 18.9 3.4 34 33-68 74-107 (108)
271 KOG3881 Uncharacterized conser 21.6 4.6E+02 0.0099 21.5 10.9 144 16-178 162-322 (412)
272 cd01207 Ena-Vasp Enabled-VASP- 21.5 1.4E+02 0.003 19.6 3.0 18 169-189 10-27 (111)
273 PF13810 DUF4185: Domain of un 21.1 3.9E+02 0.0084 21.1 6.0 63 9-71 99-183 (316)
274 PTZ00334 trans-sialidase; Prov 20.8 6.4E+02 0.014 23.0 7.6 61 122-186 288-349 (780)
275 KOG0308 Conserved WD40 repeat- 20.3 6.1E+02 0.013 22.5 11.8 92 32-132 96-204 (735)
276 KOG0265 U5 snRNP-specific prot 20.3 4.4E+02 0.0096 20.9 9.5 14 31-44 112-125 (338)
277 COG4334 Uncharacterized protei 20.2 1.1E+02 0.0024 19.9 2.2 15 10-24 41-55 (131)
278 PF07433 DUF1513: Protein of u 20.1 4.5E+02 0.0097 20.8 9.5 76 109-188 16-93 (305)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=259.71 Aligned_cols=193 Identities=15% Similarity=0.275 Sum_probs=163.3
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcc
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSK 80 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~ 80 (202)
||.+|.++++++++++|||+||.+.....++++++|||.+++|..+++|+.+|..+++++++|+||++||..+.. ..+
T Consensus 290 mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~--~~~ 367 (557)
T PHA02713 290 IPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTN--VER 367 (557)
T ss_pred CCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCC--CCc
Confidence 788999999999999999999975334457889999999999999999999999999999999999999985432 356
Q ss_pred eEEEEeCCCCeEEeccCcc--ceeeeeEEECCEEEEEeCCC----------------------CCeEEEEeCCCCcEEEe
Q 028925 81 FVDVYNPERHTWCQMKNGC--VMVTAHAVVGKKLFCMEWKN----------------------QRKLTIFDPEDNSWKMV 136 (202)
Q Consensus 81 ~~~~yd~~~~~W~~~~~~~--~~~~~~~~~~~~iyv~Gg~~----------------------~~~~~~yd~~~~~W~~~ 136 (202)
++++|||.+++|+.+++++ +..+++++++++||++||.. .+.+++|||++++|+.+
T Consensus 368 sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v 447 (557)
T PHA02713 368 TIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL 447 (557)
T ss_pred eEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence 8999999999999998544 45566788999999999843 35799999999999999
Q ss_pred ccCCCCCCCCCeeEEEECCeEEEEcccCCCC---ceeEEEeCCC-CCCCcceeecccCCceeeeEEEe
Q 028925 137 PVPLTGSSSIGFRFGILDGKLLLFSLEEEPS---YSTLLYDPNA-ASGSEWQTSKIKPSGLCLCSVTI 200 (202)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~---~~~~~yd~~~-~~~~~W~~~~~~p~~~~~~~~~~ 200 (202)
+.+.. .+..+++++++|+||++||..... ..+++|||++ + +|+.++.||.+|..+++++
T Consensus 448 ~~m~~--~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~---~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 448 PNFWT--GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN---GWELITTTESRLSALHTIL 510 (557)
T ss_pred CCCCc--ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC---CeeEccccCcccccceeEE
Confidence 74433 477888999999999999975322 3579999999 8 9999999999999666543
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.9e-38 Score=259.52 Aligned_cols=193 Identities=29% Similarity=0.497 Sum_probs=170.3
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcc
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSK 80 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~ 80 (202)
||.+|..+++++++++||++||.+.....++++|+||+.+++|..+++|+.+|..+++++++|+||++||.++.. .++
T Consensus 319 m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~--~l~ 396 (571)
T KOG4441|consen 319 MPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK--SLN 396 (571)
T ss_pred CCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccc--ccc
Confidence 789999999999999999999997534567899999999999999999999999999999999999999998554 577
Q ss_pred eEEEEeCCCCeEEeccCc--cceeeeeEEECCEEEEEeCC-----CCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEE
Q 028925 81 FVDVYNPERHTWCQMKNG--CVMVTAHAVVGKKLFCMEWK-----NQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGIL 153 (202)
Q Consensus 81 ~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~iyv~Gg~-----~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~ 153 (202)
++|+|||.+++|+.++++ ++..+++++++++||++||. ...++++|||.+++|+.++.+..+ |.++++++.
T Consensus 397 svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~--R~~~g~a~~ 474 (571)
T KOG4441|consen 397 SVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR--RSGFGVAVL 474 (571)
T ss_pred cEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc--cccceEEEE
Confidence 899999999999999965 45667889999999999983 347899999999999999755444 889999999
Q ss_pred CCeEEEEcccCCCC--ceeEEEeCCCCCCCcceeecccCCceeeeEEEe
Q 028925 154 DGKLLLFSLEEEPS--YSTLLYDPNAASGSEWQTSKIKPSGLCLCSVTI 200 (202)
Q Consensus 154 ~~~i~v~gG~~~~~--~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~~~ 200 (202)
+++||++||+.... ..+++|||+++ +|+.+..|+.+++++.+++
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~ 520 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETN---QWTMVAPMTSPRSAVGVVV 520 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCC---ceeEcccCccccccccEEE
Confidence 99999999987632 37999999999 9999999999999665543
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.1e-37 Score=252.77 Aligned_cols=193 Identities=30% Similarity=0.491 Sum_probs=168.3
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcc
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSK 80 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~ 80 (202)
|+.+|..+++++++|+||++||.+ ....++++++|||.+++|+.+++|+.+|..+++++++|+||++||.+.... .++
T Consensus 367 M~~~R~~~~v~~l~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~-~l~ 444 (571)
T KOG4441|consen 367 MNTKRSDFGVAVLDGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN-CLN 444 (571)
T ss_pred ccCccccceeEEECCEEEEEeccc-cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc-ccc
Confidence 789999999999999999999997 456688999999999999999999999999999999999999999876543 578
Q ss_pred eEEEEeCCCCeEEeccCcc--ceeeeeEEECCEEEEEeCCC----CCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEEC
Q 028925 81 FVDVYNPERHTWCQMKNGC--VMVTAHAVVGKKLFCMEWKN----QRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILD 154 (202)
Q Consensus 81 ~~~~yd~~~~~W~~~~~~~--~~~~~~~~~~~~iyv~Gg~~----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 154 (202)
++++|||.+++|+.+++++ +...++++.+++||++||.. ...+++|||.+++|..++.+..+ +...++++.+
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~--rs~~g~~~~~ 522 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP--RSAVGVVVLG 522 (571)
T ss_pred eEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc--cccccEEEEC
Confidence 9999999999999999654 55677899999999999943 45799999999999999755555 8888999999
Q ss_pred CeEEEEcccCCCC--ceeEEEeCCCCCCCcceeecccCCceeeeEEEe
Q 028925 155 GKLLLFSLEEEPS--YSTLLYDPNAASGSEWQTSKIKPSGLCLCSVTI 200 (202)
Q Consensus 155 ~~i~v~gG~~~~~--~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~~~ 200 (202)
+++|++||+.... ..+..|||+++ +|+.+..+...++.+++++
T Consensus 523 ~~ly~vGG~~~~~~l~~ve~ydp~~d---~W~~~~~~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 523 GKLYAVGGFDGNNNLNTVECYDPETD---TWTEVTEPESGRGGAGVAV 567 (571)
T ss_pred CEEEEEecccCccccceeEEcCCCCC---ceeeCCCccccccCcceEE
Confidence 9999999976544 48999999999 9999977777777555543
No 4
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=244.93 Aligned_cols=181 Identities=18% Similarity=0.308 Sum_probs=153.4
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCC-----
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFT----- 75 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~----- 75 (202)
||.+|..+++++++++||++||.+. ...++++++|||.+++|+.+++||.+|..+++++++|+||++||.....
T Consensus 338 m~~~R~~~~~~~~~g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 338 MIKNRCRFSLAVIDDTIYAIGGQNG-TNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred CcchhhceeEEEECCEEEEECCcCC-CCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccc
Confidence 7889999999999999999999863 3346789999999999999999999999999999999999999976321
Q ss_pred -----------CCCcceEEEEeCCCCeEEeccCc--cceeeeeEEECCEEEEEeCCC-----CCeEEEEeCCC-CcEEEe
Q 028925 76 -----------IGNSKFVDVYNPERHTWCQMKNG--CVMVTAHAVVGKKLFCMEWKN-----QRKLTIFDPED-NSWKMV 136 (202)
Q Consensus 76 -----------~~~~~~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~iyv~Gg~~-----~~~~~~yd~~~-~~W~~~ 136 (202)
....+.+++|||.+++|+.++++ ++..+++++++++||++||.. ...+++|||++ ++|+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc
Confidence 01246799999999999999965 455677889999999999843 24579999999 899999
Q ss_pred ccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceeecc
Q 028925 137 PVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSKI 188 (202)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~ 188 (202)
+.++ ..+..+++++++|+||++||.... ..+..||+.++ +|+.+..
T Consensus 497 ~~m~--~~r~~~~~~~~~~~iyv~Gg~~~~-~~~e~yd~~~~---~W~~~~~ 542 (557)
T PHA02713 497 TTTE--SRLSALHTILHDNTIMMLHCYESY-MLQDTFNVYTY---EWNHICH 542 (557)
T ss_pred cccC--cccccceeEEECCEEEEEeeecce-eehhhcCcccc---cccchhh
Confidence 7433 358889999999999999998653 37999999999 9998743
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.7e-34 Score=226.11 Aligned_cols=195 Identities=20% Similarity=0.343 Sum_probs=155.0
Q ss_pred CCccccceEEEEECCEEEEEcCcCCC-CCceeeeEEEeCCCCCeEEcCCCC-CCc---eeeeeEEECCEEEEEcCccCCC
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMD-GESLSSAEVYDPDTDKWNLIESLR-RPR---WGCFACSFDGKLYVMGGRSSFT 75 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~t~~W~~~~~~~-~~r---~~~~~~~~~~~iy~~gG~~~~~ 75 (202)
+|.||.+|++++++++|||+||.... ....+++++||+.+++|+.++++. .+| ..+++++++++||++||.....
T Consensus 19 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~ 98 (341)
T PLN02153 19 GPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR 98 (341)
T ss_pred CCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC
Confidence 58899999999999999999998532 233578999999999999988763 343 3678889999999999986433
Q ss_pred CCCcceEEEEeCCCCeEEeccC-------ccceeeeeEEECCEEEEEeCCC----------CCeEEEEeCCCCcEEEecc
Q 028925 76 IGNSKFVDVYNPERHTWCQMKN-------GCVMVTAHAVVGKKLFCMEWKN----------QRKLTIFDPEDNSWKMVPV 138 (202)
Q Consensus 76 ~~~~~~~~~yd~~~~~W~~~~~-------~~~~~~~~~~~~~~iyv~Gg~~----------~~~~~~yd~~~~~W~~~~~ 138 (202)
..+++++||+.+++|+.+++ .++..+++++.+++|||+||.. .+++++||+++++|+.++.
T Consensus 99 --~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~ 176 (341)
T PLN02153 99 --EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPD 176 (341)
T ss_pred --ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCC
Confidence 35689999999999998863 3566777888999999999843 2478999999999999874
Q ss_pred CC-CCCCCCCeeEEEECCeEEEEcccCC----------CCceeEEEeCCCCCCCcceeec---ccCCcee-eeEEEe
Q 028925 139 PL-TGSSSIGFRFGILDGKLLLFSLEEE----------PSYSTLLYDPNAASGSEWQTSK---IKPSGLC-LCSVTI 200 (202)
Q Consensus 139 ~~-~~~~~~~~~~~~~~~~i~v~gG~~~----------~~~~~~~yd~~~~~~~~W~~~~---~~p~~~~-~~~~~~ 200 (202)
+. ++..+.++++++.+++|||+||... ....+++||++++ +|++++ .+|.+|. ++++++
T Consensus 177 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~---~W~~~~~~g~~P~~r~~~~~~~~ 250 (341)
T PLN02153 177 PGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG---KWTEVETTGAKPSARSVFAHAVV 250 (341)
T ss_pred CCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCC---cEEeccccCCCCCCcceeeeEEE
Confidence 32 3356888888999999999998642 1247999999999 999985 4677776 444443
No 6
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=3.6e-34 Score=222.86 Aligned_cols=192 Identities=21% Similarity=0.256 Sum_probs=152.2
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCe----EEcCCCCCCceeeeeEEECCEEEEEcCccCCCC
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKW----NLIESLRRPRWGCFACSFDGKLYVMGGRSSFTI 76 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W----~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~ 76 (202)
||.+|.++++++++++||++||.+. ...++++++||+.+++| +.+++||.+|..+++++++++||++||..+..
T Consensus 59 lp~~r~~~~~~~~~~~lyviGG~~~-~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~- 136 (323)
T TIGR03548 59 LPYEAAYGASVSVENGIYYIGGSNS-SERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK- 136 (323)
T ss_pred CCccccceEEEEECCEEEEEcCCCC-CCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-
Confidence 7889999999999999999999863 34578899999999998 78899999999999999999999999975332
Q ss_pred CCcceEEEEeCCCCeEEeccCc---cceeeeeEEECCEEEEEeCCC---CCeEEEEeCCCCcEEEeccCC---CCCCC-C
Q 028925 77 GNSKFVDVYNPERHTWCQMKNG---CVMVTAHAVVGKKLFCMEWKN---QRKLTIFDPEDNSWKMVPVPL---TGSSS-I 146 (202)
Q Consensus 77 ~~~~~~~~yd~~~~~W~~~~~~---~~~~~~~~~~~~~iyv~Gg~~---~~~~~~yd~~~~~W~~~~~~~---~~~~~-~ 146 (202)
..+++++||+.+++|+.++++ ++..+.+++++++||++||.. ..++++||+++++|+.++.+. .+..+ .
T Consensus 137 -~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~ 215 (323)
T TIGR03548 137 -PSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLG 215 (323)
T ss_pred -cCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccc
Confidence 357899999999999999843 345566678899999999843 246789999999999997431 22222 2
Q ss_pred CeeEEEECCeEEEEcccCCC----------------------------------CceeEEEeCCCCCCCcceeecccC-C
Q 028925 147 GFRFGILDGKLLLFSLEEEP----------------------------------SYSTLLYDPNAASGSEWQTSKIKP-S 191 (202)
Q Consensus 147 ~~~~~~~~~~i~v~gG~~~~----------------------------------~~~~~~yd~~~~~~~~W~~~~~~p-~ 191 (202)
.++++..+++|||+||.... ...+++||++++ +|+.++.+| .
T Consensus 216 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~ 292 (323)
T TIGR03548 216 AASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG---KWKSIGNSPFF 292 (323)
T ss_pred eeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC---eeeEccccccc
Confidence 33344568999999997531 246999999999 999998776 4
Q ss_pred ceeeeEE
Q 028925 192 GLCLCSV 198 (202)
Q Consensus 192 ~~~~~~~ 198 (202)
+++.+++
T Consensus 293 ~r~~~~~ 299 (323)
T TIGR03548 293 ARCGAAL 299 (323)
T ss_pred ccCchhe
Confidence 6664433
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=2.1e-33 Score=220.03 Aligned_cols=185 Identities=22% Similarity=0.332 Sum_probs=148.6
Q ss_pred cceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCC-----CCCceeeeeEEECCEEEEEcCccCCC----C
Q 028925 6 YDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESL-----RRPRWGCFACSFDGKLYVMGGRSSFT----I 76 (202)
Q Consensus 6 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iy~~gG~~~~~----~ 76 (202)
.+|++++++++|||+||.+. ...++++++||+.+++|+.+++| |.+|..|++++++++||++||..... .
T Consensus 77 ~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~ 155 (341)
T PLN02153 77 LGVRMVAVGTKLYIFGGRDE-KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTP 155 (341)
T ss_pred CceEEEEECCEEEEECCCCC-CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCC
Confidence 37889999999999999863 33467899999999999999877 78999999999999999999986422 1
Q ss_pred CCcceEEEEeCCCCeEEeccC-----ccceeeeeEEECCEEEEEeCCC------------CCeEEEEeCCCCcEEEeccC
Q 028925 77 GNSKFVDVYNPERHTWCQMKN-----GCVMVTAHAVVGKKLFCMEWKN------------QRKLTIFDPEDNSWKMVPVP 139 (202)
Q Consensus 77 ~~~~~~~~yd~~~~~W~~~~~-----~~~~~~~~~~~~~~iyv~Gg~~------------~~~~~~yd~~~~~W~~~~~~ 139 (202)
...+++++||+++++|+.+++ .++..+++++++++||++||.. .+.+++||+++++|++++..
T Consensus 156 ~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~ 235 (341)
T PLN02153 156 ERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETT 235 (341)
T ss_pred cccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecccc
Confidence 124679999999999999873 3455567788999999998732 36799999999999999731
Q ss_pred -CCCCCCCCeeEEEECCeEEEEcccCCC-----------CceeEEEeCCCCCCCcceeec-----ccCCcee
Q 028925 140 -LTGSSSIGFRFGILDGKLLLFSLEEEP-----------SYSTLLYDPNAASGSEWQTSK-----IKPSGLC 194 (202)
Q Consensus 140 -~~~~~~~~~~~~~~~~~i~v~gG~~~~-----------~~~~~~yd~~~~~~~~W~~~~-----~~p~~~~ 194 (202)
..+..|..+++++++++|||+||+... ...++.||++++ +|+.+. .+|.+++
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~~~~~~~~~~~pr~~~ 304 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWEKLGECGEPAMPRGWT 304 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc---EEEeccCCCCCCCCCccc
Confidence 234467888899999999999997321 237999999999 999984 4555554
No 8
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=7.1e-34 Score=231.06 Aligned_cols=169 Identities=24% Similarity=0.362 Sum_probs=145.4
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcc
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSK 80 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~ 80 (202)
||.+|..+++++++++||++||.+. ..++++||+.+++|..+++|+.+|..+++++++|+||++||.... ..
T Consensus 305 m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~----~~ 376 (480)
T PHA02790 305 MNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET----DT 376 (480)
T ss_pred CCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC----Cc
Confidence 7889999999999999999999752 256899999999999999999999999999999999999997532 35
Q ss_pred eEEEEeCCCCeEEeccCc--cceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEE
Q 028925 81 FVDVYNPERHTWCQMKNG--CVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLL 158 (202)
Q Consensus 81 ~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (202)
.+++|||.+++|+.++++ ++..+++++++++||++||. +++||+++++|+.++.+. ..+..+++++++|+||
T Consensus 377 ~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~----~e~ydp~~~~W~~~~~m~--~~r~~~~~~v~~~~IY 450 (480)
T PHA02790 377 TTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN----AEFYCESSNTWTLIDDPI--YPRDNPELIIVDNKLL 450 (480)
T ss_pred cEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc----eEEecCCCCcEeEcCCCC--CCccccEEEEECCEEE
Confidence 799999999999999854 45566778899999999973 689999999999997443 3588889999999999
Q ss_pred EEcccCCCC--ceeEEEeCCCCCCCcceee
Q 028925 159 LFSLEEEPS--YSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 159 v~gG~~~~~--~~~~~yd~~~~~~~~W~~~ 186 (202)
++||..... ..++.||++++ +|+..
T Consensus 451 viGG~~~~~~~~~ve~Yd~~~~---~W~~~ 477 (480)
T PHA02790 451 LIGGFYRGSYIDTIEVYNNRTY---SWNIW 477 (480)
T ss_pred EECCcCCCcccceEEEEECCCC---eEEec
Confidence 999975332 47999999999 99764
No 9
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=233.03 Aligned_cols=188 Identities=18% Similarity=0.287 Sum_probs=157.9
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcc
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSK 80 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~ 80 (202)
||.+|.+|++++++++||++||.+ ....++++++||+.+++|+.+++||.+|..++++.++++||++||...... ..+
T Consensus 329 ~~~~R~~~~~~~~~~~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~-~~~ 406 (534)
T PHA03098 329 LIYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDE-LLK 406 (534)
T ss_pred CCcccccceEEEECCEEEEEeCCC-CCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCc-ccc
Confidence 678999999999999999999986 344567899999999999999999999999999999999999999754322 357
Q ss_pred eEEEEeCCCCeEEeccCc--cceeeeeEEECCEEEEEeCCC-------CCeEEEEeCCCCcEEEeccCCCCCCCCCeeEE
Q 028925 81 FVDVYNPERHTWCQMKNG--CVMVTAHAVVGKKLFCMEWKN-------QRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFG 151 (202)
Q Consensus 81 ~~~~yd~~~~~W~~~~~~--~~~~~~~~~~~~~iyv~Gg~~-------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 151 (202)
.+++||+.+++|+.++++ ++..++++..+++||++||.. ...+++||+.+++|+.++.+.. .+..++++
T Consensus 407 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~ 484 (534)
T PHA03098 407 TVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF--PRINASLC 484 (534)
T ss_pred eEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc--ccccceEE
Confidence 899999999999999844 455567788899999999843 2459999999999999974333 47777888
Q ss_pred EECCeEEEEcccCCCC--ceeEEEeCCCCCCCcceeecccCCceee
Q 028925 152 ILDGKLLLFSLEEEPS--YSTLLYDPNAASGSEWQTSKIKPSGLCL 195 (202)
Q Consensus 152 ~~~~~i~v~gG~~~~~--~~~~~yd~~~~~~~~W~~~~~~p~~~~~ 195 (202)
..+++||++||..... ..++.||++++ +|+.++.+|....+
T Consensus 485 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~~~ 527 (534)
T PHA03098 485 IFNNKIYVVGGDKYEYYINEIEVYDDKTN---TWTLFCKFPKVIGS 527 (534)
T ss_pred EECCEEEEEcCCcCCcccceeEEEeCCCC---EEEecCCCcccccc
Confidence 8999999999986433 58999999999 99999888776553
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.7e-33 Score=217.33 Aligned_cols=196 Identities=21% Similarity=0.351 Sum_probs=148.6
Q ss_pred CC-ccccceEEEEECCEEEEEcCcCCCC-----CceeeeEEEeCCCCCeEEcC-CCCCCceeeeeE-EECCEEEEEcCcc
Q 028925 1 MN-VARYDFACAEVNGKIYAVGGYGMDG-----ESLSSAEVYDPDTDKWNLIE-SLRRPRWGCFAC-SFDGKLYVMGGRS 72 (202)
Q Consensus 1 m~-~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~-~~~~~r~~~~~~-~~~~~iy~~gG~~ 72 (202)
|| .+|..+++++++++|||+||..... ..++++|+||+.+++|+.++ +++.+|..++++ +++++||++||..
T Consensus 49 ~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 49 FPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 66 5899999999999999999985322 24678999999999999997 456777777766 6899999999975
Q ss_pred CCCC--------------------------------CCcceEEEEeCCCCeEEeccCcc---ceeeeeEEECCEEEEEeC
Q 028925 73 SFTI--------------------------------GNSKFVDVYNPERHTWCQMKNGC---VMVTAHAVVGKKLFCMEW 117 (202)
Q Consensus 73 ~~~~--------------------------------~~~~~~~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~iyv~Gg 117 (202)
.... ...+.+++|||.+++|+.+++++ +..+++++++++||++||
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG 208 (346)
T TIGR03547 129 KNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLING 208 (346)
T ss_pred hHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEee
Confidence 3200 01367999999999999998543 445667888999999998
Q ss_pred CC-----CCeEEEEe--CCCCcEEEeccCCCCC-----CCCCeeEEEECCeEEEEcccCCC-------------------
Q 028925 118 KN-----QRKLTIFD--PEDNSWKMVPVPLTGS-----SSIGFRFGILDGKLLLFSLEEEP------------------- 166 (202)
Q Consensus 118 ~~-----~~~~~~yd--~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~i~v~gG~~~~------------------- 166 (202)
.. ...++.|| +++++|+.++.+..+. .+.++.+++++++|||+||....
T Consensus 209 ~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 288 (346)
T TIGR03547 209 EIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIK 288 (346)
T ss_pred eeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCc
Confidence 42 13455554 5778999997433221 12345567899999999997521
Q ss_pred CceeEEEeCCCCCCCcceeecccCCceeeeEEE
Q 028925 167 SYSTLLYDPNAASGSEWQTSKIKPSGLCLCSVT 199 (202)
Q Consensus 167 ~~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~~ 199 (202)
...+.+||++++ +|+.++.||.++.+++++
T Consensus 289 ~~~~e~yd~~~~---~W~~~~~lp~~~~~~~~~ 318 (346)
T TIGR03547 289 AWSSEVYALDNG---KWSKVGKLPQGLAYGVSV 318 (346)
T ss_pred eeEeeEEEecCC---cccccCCCCCCceeeEEE
Confidence 126889999999 999999999998865553
No 11
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.4e-32 Score=221.58 Aligned_cols=195 Identities=19% Similarity=0.281 Sum_probs=155.6
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCC-ceeeeEEEeCCCCCeEEcCCC---CC-CceeeeeEEECCEEEEEcCccCCC
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGE-SLSSAEVYDPDTDKWNLIESL---RR-PRWGCFACSFDGKLYVMGGRSSFT 75 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~---~~-~r~~~~~~~~~~~iy~~gG~~~~~ 75 (202)
+|.||.+|++++++++|||+||...... ..+++|+||+.+++|+.++++ |. .|..+++++++++||++||.....
T Consensus 162 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~ 241 (470)
T PLN02193 162 GPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR 241 (470)
T ss_pred CCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC
Confidence 4789999999999999999999753333 346799999999999987643 33 356788889999999999986432
Q ss_pred CCCcceEEEEeCCCCeEEeccC-----ccceeeeeEEECCEEEEEeCCC----CCeEEEEeCCCCcEEEeccC-CCCCCC
Q 028925 76 IGNSKFVDVYNPERHTWCQMKN-----GCVMVTAHAVVGKKLFCMEWKN----QRKLTIFDPEDNSWKMVPVP-LTGSSS 145 (202)
Q Consensus 76 ~~~~~~~~~yd~~~~~W~~~~~-----~~~~~~~~~~~~~~iyv~Gg~~----~~~~~~yd~~~~~W~~~~~~-~~~~~~ 145 (202)
..+++++||+.+++|+++++ .++..+++++.+++||++||.. ...++.||+.+++|+.++.+ ..+..|
T Consensus 242 --~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R 319 (470)
T PLN02193 242 --QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIR 319 (470)
T ss_pred --CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCC
Confidence 46789999999999999874 3566677788999999999843 46789999999999998732 234567
Q ss_pred CCeeEEEECCeEEEEcccCCC-CceeEEEeCCCCCCCcceeecc---cCCcee-eeEEEe
Q 028925 146 IGFRFGILDGKLLLFSLEEEP-SYSTLLYDPNAASGSEWQTSKI---KPSGLC-LCSVTI 200 (202)
Q Consensus 146 ~~~~~~~~~~~i~v~gG~~~~-~~~~~~yd~~~~~~~~W~~~~~---~p~~~~-~~~~~~ 200 (202)
.++++++++++||++||.... ...+++||++++ +|+.++. +|.+|. ++++++
T Consensus 320 ~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~---~W~~~~~~g~~P~~R~~~~~~~~ 376 (470)
T PLN02193 320 GGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD---KWTQVETFGVRPSERSVFASAAV 376 (470)
T ss_pred CCcEEEEECCcEEEEECCCCCccCceEEEECCCC---EEEEeccCCCCCCCcceeEEEEE
Confidence 888888999999999996532 358999999999 9999954 477776 444444
No 12
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.4e-32 Score=214.52 Aligned_cols=184 Identities=22% Similarity=0.293 Sum_probs=145.9
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeC--CCCCeEEcCCCC-CCceeeeeEEECCEEEEEcCccCCC--
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDP--DTDKWNLIESLR-RPRWGCFACSFDGKLYVMGGRSSFT-- 75 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iy~~gG~~~~~-- 75 (202)
||.+|..+++++++++|||+||... +++++||+ .+++|..+++|| .+|..+.+++++++||++||.....
T Consensus 4 lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE 78 (346)
T ss_pred CCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC
Confidence 7899999999999999999999731 56899996 678999999998 5899999999999999999975321
Q ss_pred --CCCcceEEEEeCCCCeEEecc-Ccccee--eeeE-EECCEEEEEeCCC------------------------------
Q 028925 76 --IGNSKFVDVYNPERHTWCQMK-NGCVMV--TAHA-VVGKKLFCMEWKN------------------------------ 119 (202)
Q Consensus 76 --~~~~~~~~~yd~~~~~W~~~~-~~~~~~--~~~~-~~~~~iyv~Gg~~------------------------------ 119 (202)
.....++++|||.+++|+.++ +.++.. ++++ +.+++||++||..
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFS 158 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhC
Confidence 113568999999999999997 444433 3334 6799999999843
Q ss_pred --------CCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCC---ceeEEEe--CCCCCCCcceee
Q 028925 120 --------QRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPS---YSTLLYD--PNAASGSEWQTS 186 (202)
Q Consensus 120 --------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~---~~~~~yd--~~~~~~~~W~~~ 186 (202)
.+.+++||+.+++|+.++. .+...+.+++++.++++|||+||..... ..++.|| ++++ +|+.+
T Consensus 159 ~~~~~~~~~~~v~~YDp~t~~W~~~~~-~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~---~W~~~ 234 (346)
T TIGR03547 159 QPPEDYFWNKNVLSYDPSTNQWRNLGE-NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKL---EWNKL 234 (346)
T ss_pred CChhHcCccceEEEEECCCCceeECcc-CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCc---eeeec
Confidence 2679999999999999973 3333577888889999999999975432 2455554 5777 99999
Q ss_pred cccCCce
Q 028925 187 KIKPSGL 193 (202)
Q Consensus 187 ~~~p~~~ 193 (202)
+.||.++
T Consensus 235 ~~m~~~r 241 (346)
T TIGR03547 235 PPLPPPK 241 (346)
T ss_pred CCCCCCC
Confidence 9888764
No 13
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=226.42 Aligned_cols=187 Identities=20% Similarity=0.270 Sum_probs=156.5
Q ss_pred ccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEE
Q 028925 5 RYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDV 84 (202)
Q Consensus 5 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~ 84 (202)
+..|++++++++||++||........+++++||+.+++|..+++|+.+|..+++++++++||++||..... ..+++++
T Consensus 285 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~--~~~~v~~ 362 (534)
T PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSI--SLNTVES 362 (534)
T ss_pred cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCE--ecceEEE
Confidence 34568889999999999987555566789999999999999999999999999999999999999986322 4578999
Q ss_pred EeCCCCeEEeccC--ccceeeeeEEECCEEEEEeCCC-----CCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeE
Q 028925 85 YNPERHTWCQMKN--GCVMVTAHAVVGKKLFCMEWKN-----QRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKL 157 (202)
Q Consensus 85 yd~~~~~W~~~~~--~~~~~~~~~~~~~~iyv~Gg~~-----~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 157 (202)
||+.+++|+.+++ .++..++++..+++||++||.. .+.++.||+.+++|+.++.+ +..+.+++++..+++|
T Consensus 363 yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r~~~~~~~~~~~i 440 (534)
T PHA03098 363 WKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISHYGGCAIYHDGKI 440 (534)
T ss_pred EcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--CccccCceEEEECCEE
Confidence 9999999999984 4566677788999999999832 36899999999999999733 3347788888999999
Q ss_pred EEEcccCCCC-----ceeEEEeCCCCCCCcceeecccCCceeeeEE
Q 028925 158 LLFSLEEEPS-----YSTLLYDPNAASGSEWQTSKIKPSGLCLCSV 198 (202)
Q Consensus 158 ~v~gG~~~~~-----~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~ 198 (202)
|++||..... ..+++||++++ +|+.++.+|.++..+++
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~ 483 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTN---KWTELSSLNFPRINASL 483 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCC---ceeeCCCCCcccccceE
Confidence 9999975432 35999999999 99999999888874444
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.1e-32 Score=221.47 Aligned_cols=173 Identities=16% Similarity=0.250 Sum_probs=146.4
Q ss_pred EEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCC
Q 028925 10 CAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 10 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
.+.+++.||++||.+. ....+.+++|||.+++|..+++|+.+|..+++++++++||++||..+ ..++++|||.+
T Consensus 267 ~~~~~~~lyviGG~~~-~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~-----~~sve~ydp~~ 340 (480)
T PHA02790 267 STHVGEVVYLIGGWMN-NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN-----PTSVERWFHGD 340 (480)
T ss_pred eEEECCEEEEEcCCCC-CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC-----CCceEEEECCC
Confidence 3458999999999853 34567899999999999999999999999999999999999999753 24689999999
Q ss_pred CeEEeccCcc--ceeeeeEEECCEEEEEeCCC--CCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCC
Q 028925 90 HTWCQMKNGC--VMVTAHAVVGKKLFCMEWKN--QRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEE 165 (202)
Q Consensus 90 ~~W~~~~~~~--~~~~~~~~~~~~iyv~Gg~~--~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~ 165 (202)
++|+.+++++ +..+++++++++||++||.. ...+++|||++++|+.++.+.. .+..+++++++|+||++||.
T Consensus 341 n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~--~r~~~~~~~~~~~IYv~GG~-- 416 (480)
T PHA02790 341 AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY--PHYKSCALVFGRRLFLVGRN-- 416 (480)
T ss_pred CeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC--ccccceEEEECCEEEEECCc--
Confidence 9999999654 55577788999999999843 3578999999999999964433 47778888999999999973
Q ss_pred CCceeEEEeCCCCCCCcceeecccCCceeeeEEE
Q 028925 166 PSYSTLLYDPNAASGSEWQTSKIKPSGLCLCSVT 199 (202)
Q Consensus 166 ~~~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~~ 199 (202)
+.+||++++ +|+.++.||.++..++++
T Consensus 417 ----~e~ydp~~~---~W~~~~~m~~~r~~~~~~ 443 (480)
T PHA02790 417 ----AEFYCESSN---TWTLIDDPIYPRDNPELI 443 (480)
T ss_pred ----eEEecCCCC---cEeEcCCCCCCccccEEE
Confidence 688999999 999999999988865554
No 15
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=7.3e-32 Score=218.78 Aligned_cols=184 Identities=20% Similarity=0.322 Sum_probs=151.8
Q ss_pred ccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCC---CCCceeeeeEEECCEEEEEcCccCCCCCCcce
Q 028925 5 RYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESL---RRPRWGCFACSFDGKLYVMGGRSSFTIGNSKF 81 (202)
Q Consensus 5 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~ 81 (202)
|.+|++++++++|||+||.+. ...++++|+||+.+++|+.++++ |.+|..|++++++++||++||..... ...+
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~--~~~~ 295 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA--RLKT 295 (470)
T ss_pred ccceEEEEECCEEEEECCCCC-CCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC--Ccce
Confidence 568899999999999999863 34578999999999999999887 78999999999999999999986432 4578
Q ss_pred EEEEeCCCCeEEeccC-----ccceeeeeEEECCEEEEEeCCC---CCeEEEEeCCCCcEEEeccC-CCCCCCCCeeEEE
Q 028925 82 VDVYNPERHTWCQMKN-----GCVMVTAHAVVGKKLFCMEWKN---QRKLTIFDPEDNSWKMVPVP-LTGSSSIGFRFGI 152 (202)
Q Consensus 82 ~~~yd~~~~~W~~~~~-----~~~~~~~~~~~~~~iyv~Gg~~---~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~ 152 (202)
+++||+.+++|+.+++ .++..+++++++++||++||.. .+++++||+++++|+.++.. ..+..|..+++++
T Consensus 296 ~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~ 375 (470)
T PLN02193 296 LDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA 375 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE
Confidence 9999999999999872 3455567788899999999843 47899999999999999732 2345688888999
Q ss_pred ECCeEEEEcccCCC-----------CceeEEEeCCCCCCCcceeecc------cCCcee
Q 028925 153 LDGKLLLFSLEEEP-----------SYSTLLYDPNAASGSEWQTSKI------KPSGLC 194 (202)
Q Consensus 153 ~~~~i~v~gG~~~~-----------~~~~~~yd~~~~~~~~W~~~~~------~p~~~~ 194 (202)
++++|||+||.... ..+++.||++++ +|+.+.. .|.+|.
T Consensus 376 ~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~---~W~~~~~~~~~~~~P~~R~ 431 (470)
T PLN02193 376 VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL---QWERLDKFGEEEETPSSRG 431 (470)
T ss_pred ECCEEEEECCccCCccccccCccceeccEEEEEcCcC---EEEEcccCCCCCCCCCCCc
Confidence 99999999997531 136999999999 9999853 467776
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=4.5e-31 Score=209.15 Aligned_cols=195 Identities=24% Similarity=0.375 Sum_probs=145.4
Q ss_pred CC-ccccceEEEEECCEEEEEcCcCC-C----CCceeeeEEEeCCCCCeEEcCC-CCCCceeeeeEE-ECCEEEEEcCcc
Q 028925 1 MN-VARYDFACAEVNGKIYAVGGYGM-D----GESLSSAEVYDPDTDKWNLIES-LRRPRWGCFACS-FDGKLYVMGGRS 72 (202)
Q Consensus 1 m~-~~r~~~~~~~~~~~iyv~GG~~~-~----~~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~-~~~~iy~~gG~~ 72 (202)
|| .+|.++++++++++|||+||... . ...++++|+||+.+++|+.+++ +|.++..|++++ .+++||++||..
T Consensus 70 ~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 70 FPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45 47999999999999999999863 1 1246789999999999999986 467777777776 899999999975
Q ss_pred CCC--------------------------------CCCcceEEEEeCCCCeEEeccCcc---ceeeeeEEECCEEEEEeC
Q 028925 73 SFT--------------------------------IGNSKFVDVYNPERHTWCQMKNGC---VMVTAHAVVGKKLFCMEW 117 (202)
Q Consensus 73 ~~~--------------------------------~~~~~~~~~yd~~~~~W~~~~~~~---~~~~~~~~~~~~iyv~Gg 117 (202)
... ....+++++|||.+++|+.+++++ +..++++.++++||++||
T Consensus 150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG 229 (376)
T PRK14131 150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLING 229 (376)
T ss_pred HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEee
Confidence 310 001367999999999999988443 445667788999999998
Q ss_pred CC-----CCeEE--EEeCCCCcEEEeccCCCCC------CCCCeeEEEECCeEEEEcccCCCC-----------------
Q 028925 118 KN-----QRKLT--IFDPEDNSWKMVPVPLTGS------SSIGFRFGILDGKLLLFSLEEEPS----------------- 167 (202)
Q Consensus 118 ~~-----~~~~~--~yd~~~~~W~~~~~~~~~~------~~~~~~~~~~~~~i~v~gG~~~~~----------------- 167 (202)
.. ...++ .||+++++|+.++.++.+. ...++.+++.+++|||+||.....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T PRK14131 230 EIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLK 309 (376)
T ss_pred eECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCc
Confidence 42 22333 4578999999997432221 112233567899999999975321
Q ss_pred --ceeEEEeCCCCCCCcceeecccCCceeeeEE
Q 028925 168 --YSTLLYDPNAASGSEWQTSKIKPSGLCLCSV 198 (202)
Q Consensus 168 --~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~ 198 (202)
..+.+||++++ +|+.++.+|.+|..+++
T Consensus 310 ~~~~~e~yd~~~~---~W~~~~~lp~~r~~~~a 339 (376)
T PRK14131 310 KSWSDEIYALVNG---KWQKVGELPQGLAYGVS 339 (376)
T ss_pred ceeehheEEecCC---cccccCcCCCCccceEE
Confidence 14678999999 99999999999985543
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=2.7e-30 Score=204.66 Aligned_cols=184 Identities=23% Similarity=0.280 Sum_probs=144.5
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCC--CCCeEEcCCCC-CCceeeeeEEECCEEEEEcCccCCC--
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPD--TDKWNLIESLR-RPRWGCFACSFDGKLYVMGGRSSFT-- 75 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iy~~gG~~~~~-- 75 (202)
||.+|..+++++++++|||+||... +.+++||+. +++|..++++| .+|..+++++++++||++||.....
T Consensus 25 lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~ 99 (376)
T PRK14131 25 LPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSE 99 (376)
T ss_pred CCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCC
Confidence 7899998999999999999999632 348899986 47899999987 5899999999999999999976411
Q ss_pred --CCCcceEEEEeCCCCeEEeccC-ccc--eeeeeEE-ECCEEEEEeCCC------------------------------
Q 028925 76 --IGNSKFVDVYNPERHTWCQMKN-GCV--MVTAHAV-VGKKLFCMEWKN------------------------------ 119 (202)
Q Consensus 76 --~~~~~~~~~yd~~~~~W~~~~~-~~~--~~~~~~~-~~~~iyv~Gg~~------------------------------ 119 (202)
.....++++||+.+++|+.+++ .++ ..+++++ .+++||++||..
T Consensus 100 ~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 100 GSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred CceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 1135689999999999999973 233 3344444 799999999943
Q ss_pred --------CCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCC---cee--EEEeCCCCCCCcceee
Q 028925 120 --------QRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPS---YST--LLYDPNAASGSEWQTS 186 (202)
Q Consensus 120 --------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~---~~~--~~yd~~~~~~~~W~~~ 186 (202)
.+.+++||+.+++|+.++ +.+...+.+++++.++++|||+||..... ..+ ..||++++ +|+.+
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~---~W~~~ 255 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL---KWQKL 255 (376)
T ss_pred CChhhcCcCceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc---ceeec
Confidence 257999999999999987 33333577888889999999999975332 233 35677888 99999
Q ss_pred cccCCce
Q 028925 187 KIKPSGL 193 (202)
Q Consensus 187 ~~~p~~~ 193 (202)
+.+|.++
T Consensus 256 ~~~p~~~ 262 (376)
T PRK14131 256 PDLPPAP 262 (376)
T ss_pred CCCCCCC
Confidence 8887765
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.98 E-value=4.5e-30 Score=199.86 Aligned_cols=181 Identities=15% Similarity=0.162 Sum_probs=144.4
Q ss_pred ccccceEEEEECCEEEEEcCcCCCCC---------ceeeeEEEe-CCC-CCeEEcCCCCCCceeeeeEEECCEEEEEcCc
Q 028925 3 VARYDFACAEVNGKIYAVGGYGMDGE---------SLSSAEVYD-PDT-DKWNLIESLRRPRWGCFACSFDGKLYVMGGR 71 (202)
Q Consensus 3 ~~r~~~~~~~~~~~iyv~GG~~~~~~---------~~~~~~~yd-~~t-~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~ 71 (202)
..+.++.++++++.|||+||.+.... ..+++++|+ +.. .+|..+++||.+|.++++++++++||++||.
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~ 81 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGS 81 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCC
Confidence 45778899999999999999875432 235788885 332 2799999999999888888899999999998
Q ss_pred cCCCCCCcceEEEEeCCCCeE----EeccC--ccceeeeeEEECCEEEEEeCC----CCCeEEEEeCCCCcEEEeccCCC
Q 028925 72 SSFTIGNSKFVDVYNPERHTW----CQMKN--GCVMVTAHAVVGKKLFCMEWK----NQRKLTIFDPEDNSWKMVPVPLT 141 (202)
Q Consensus 72 ~~~~~~~~~~~~~yd~~~~~W----~~~~~--~~~~~~~~~~~~~~iyv~Gg~----~~~~~~~yd~~~~~W~~~~~~~~ 141 (202)
.+.. ..+++++||+.+++| +.+++ .++..+++++++++||++||. ..+.+++||+++++|+.++. .+
T Consensus 82 ~~~~--~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p 158 (323)
T TIGR03548 82 NSSE--RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FP 158 (323)
T ss_pred CCCC--CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CC
Confidence 6433 467899999999988 66664 344557778899999999984 35789999999999999973 33
Q ss_pred CCCCCCeeEEEECCeEEEEcccCCCC-ceeEEEeCCCCCCCcceeeccc
Q 028925 142 GSSSIGFRFGILDGKLLLFSLEEEPS-YSTLLYDPNAASGSEWQTSKIK 189 (202)
Q Consensus 142 ~~~~~~~~~~~~~~~i~v~gG~~~~~-~~~~~yd~~~~~~~~W~~~~~~ 189 (202)
...|..++++.++++|||+||..... .++++||++++ +|+.++.+
T Consensus 159 ~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~---~W~~~~~~ 204 (323)
T TIGR03548 159 GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN---QWQKVADP 204 (323)
T ss_pred CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC---eeEECCCC
Confidence 33477888889999999999975432 36899999999 99999765
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.97 E-value=9.3e-31 Score=189.39 Aligned_cols=196 Identities=20% Similarity=0.333 Sum_probs=162.0
Q ss_pred CccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEc---CCCCCCceeeeeEEECCEEEEEcCccCCCCCC
Q 028925 2 NVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLI---ESLRRPRWGCFACSFDGKLYVMGGRSSFTIGN 78 (202)
Q Consensus 2 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~ 78 (202)
|-.|++|+++..++++|+.||++......+-++.|||+++.|.+. .-+|.+|.+|++|++++.+|+|||+.+....=
T Consensus 76 PyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~F 155 (392)
T KOG4693|consen 76 PYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRF 155 (392)
T ss_pred chhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhh
Confidence 456999999999999999999987777788999999999999765 34689999999999999999999997654444
Q ss_pred cceEEEEeCCCCeEEecc---Ccc--ceeeeeEEECCEEEEEeCCC-------------CCeEEEEeCCCCcEEEec-cC
Q 028925 79 SKFVDVYNPERHTWCQMK---NGC--VMVTAHAVVGKKLFCMEWKN-------------QRKLTIFDPEDNSWKMVP-VP 139 (202)
Q Consensus 79 ~~~~~~yd~~~~~W~~~~---~~~--~~~~~~~~~~~~iyv~Gg~~-------------~~~~~~yd~~~~~W~~~~-~~ 139 (202)
..+++++|..|-+|+.+. ..+ +.+++++++++.+|++||.. -..+..+|..+..|.+.+ .+
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 568999999999999987 233 44578889999999999832 246788999999999986 45
Q ss_pred CCCCCCCCeeEEEECCeEEEEcccCCCC----ceeEEEeCCCCCCCcceee---cccCCcee-eeEEEe
Q 028925 140 LTGSSSIGFRFGILDGKLLLFSLEEEPS----YSTLLYDPNAASGSEWQTS---KIKPSGLC-LCSVTI 200 (202)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~v~gG~~~~~----~~~~~yd~~~~~~~~W~~~---~~~p~~~~-~~~~~~ 200 (202)
..+..|-.++..+++++||++||++... ++++.|||.+. .|+.+ +..|.+|. .|++..
T Consensus 236 ~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~---~W~~I~~~Gk~P~aRRRqC~~v~ 301 (392)
T KOG4693|consen 236 MKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTS---MWSVISVRGKYPSARRRQCSVVS 301 (392)
T ss_pred cCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccc---hheeeeccCCCCCcccceeEEEE
Confidence 5566677788889999999999987543 38999999999 99998 55666655 666644
No 20
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=7e-27 Score=189.60 Aligned_cols=194 Identities=23% Similarity=0.349 Sum_probs=162.1
Q ss_pred CccccceEEEEECCEEEEEcCcCCCCCcee-eeEEEeCCCCCeEEcC---CCCCCceeeeeEEECCEEEEEcCccCCCCC
Q 028925 2 NVARYDFACAEVNGKIYAVGGYGMDGESLS-SAEVYDPDTDKWNLIE---SLRRPRWGCFACSFDGKLYVMGGRSSFTIG 77 (202)
Q Consensus 2 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~ 77 (202)
|.+|..|+++.+++++||+||......... ++|++|..+..|.... ..|.+|..|.++.++.+||++||... ...
T Consensus 58 p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~-~~~ 136 (482)
T KOG0379|consen 58 PIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK-KYR 136 (482)
T ss_pred cchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC-CCC
Confidence 778999999999999999999863332222 6999999999997653 45789999999999999999999886 223
Q ss_pred CcceEEEEeCCCCeEEecc-----CccceeeeeEEECCEEEEEeCC-----CCCeEEEEeCCCCcEEEec-cCCCCCCCC
Q 028925 78 NSKFVDVYNPERHTWCQMK-----NGCVMVTAHAVVGKKLFCMEWK-----NQRKLTIFDPEDNSWKMVP-VPLTGSSSI 146 (202)
Q Consensus 78 ~~~~~~~yd~~~~~W~~~~-----~~~~~~~~~~~~~~~iyv~Gg~-----~~~~~~~yd~~~~~W~~~~-~~~~~~~~~ 146 (202)
...+++.||+.+.+|..+. |.++..+++++++++|||+||. ..+++++||+++.+|.++. ....+.+|+
T Consensus 137 ~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~ 216 (482)
T KOG0379|consen 137 NLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY 216 (482)
T ss_pred ChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC
Confidence 5779999999999999987 5667788999999999999982 3578999999999999997 334455799
Q ss_pred CeeEEEECCeEEEEcccCCC---CceeEEEeCCCCCCCcceee---cccCCceeeeEEE
Q 028925 147 GFRFGILDGKLLLFSLEEEP---SYSTLLYDPNAASGSEWQTS---KIKPSGLCLCSVT 199 (202)
Q Consensus 147 ~~~~~~~~~~i~v~gG~~~~---~~~~~~yd~~~~~~~~W~~~---~~~p~~~~~~~~~ 199 (202)
++++++++++++|+||.... ..+++.+|..+. +|..+ +..|.+|..++++
T Consensus 217 gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~---~W~~~~~~g~~p~~R~~h~~~ 272 (482)
T KOG0379|consen 217 GHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTW---EWKLLPTGGDLPSPRSGHSLT 272 (482)
T ss_pred CceEEEECCeEEEEeccccCCceecceEeeecccc---eeeeccccCCCCCCcceeeeE
Confidence 99999999999999988732 238999999998 99976 6788998855554
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=4.7e-27 Score=178.87 Aligned_cols=200 Identities=15% Similarity=0.244 Sum_probs=161.0
Q ss_pred CccccceEEEEE--CCEEEEEcCcCCCCC---ceeeeEEEeCCCCCeEEc--CCCCCCceeeeeEEEC-CEEEEEcCccC
Q 028925 2 NVARYDFACAEV--NGKIYAVGGYGMDGE---SLSSAEVYDPDTDKWNLI--ESLRRPRWGCFACSFD-GKLYVMGGRSS 73 (202)
Q Consensus 2 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~---~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~-~~iy~~gG~~~ 73 (202)
|+||.++++++. .+.|++|||.-.+++ ..+++|.||.++++|+.+ +..|.||+.|+++++. +.+|++||.-.
T Consensus 64 PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfa 143 (521)
T KOG1230|consen 64 PSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFA 143 (521)
T ss_pred CCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccC
Confidence 789999999987 579999999643333 358999999999999987 4468899999999885 89999999743
Q ss_pred CCCC----CcceEEEEeCCCCeEEecc----CccceeeeeEEECCEEEEEeCC--------CCCeEEEEeCCCCcEEEec
Q 028925 74 FTIG----NSKFVDVYNPERHTWCQMK----NGCVMVTAHAVVGKKLFCMEWK--------NQRKLTIFDPEDNSWKMVP 137 (202)
Q Consensus 74 ~~~~----~~~~~~~yd~~~~~W~~~~----~~~~~~~~~~~~~~~iyv~Gg~--------~~~~~~~yd~~~~~W~~~~ 137 (202)
.... -.+++|+||..+++|+++. |.++..+.+++...+|++|||. ..+++++||+++-+|+++.
T Consensus 144 SPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kle 223 (521)
T KOG1230|consen 144 SPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLE 223 (521)
T ss_pred CcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeecc
Confidence 2110 1367999999999999997 7888899999999999999982 2478999999999999997
Q ss_pred cC-CCCCCCCCeeEEEE-CCeEEEEcccCCC-----------CceeEEEeCCCCC--CCcceee---cccCCceeeeEEE
Q 028925 138 VP-LTGSSSIGFRFGIL-DGKLLLFSLEEEP-----------SYSTLLYDPNAAS--GSEWQTS---KIKPSGLCLCSVT 199 (202)
Q Consensus 138 ~~-~~~~~~~~~~~~~~-~~~i~v~gG~~~~-----------~~~~~~yd~~~~~--~~~W~~~---~~~p~~~~~~~~~ 199 (202)
.+ .-|++|.++++++. +|.|||.||+... ..+++.++++.+. .|.|.++ +..|.+|+..+++
T Consensus 224 psga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~ 303 (521)
T KOG1230|consen 224 PSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVA 303 (521)
T ss_pred CCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEE
Confidence 32 13678999999888 9999999997532 1278999998732 4689998 6779999866666
Q ss_pred ee
Q 028925 200 IK 201 (202)
Q Consensus 200 ~~ 201 (202)
+-
T Consensus 304 va 305 (521)
T KOG1230|consen 304 VA 305 (521)
T ss_pred Ee
Confidence 53
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.95 E-value=7.7e-27 Score=169.14 Aligned_cols=191 Identities=19% Similarity=0.359 Sum_probs=156.8
Q ss_pred cccceEEEEECCEEEEEcCcCCCC----CceeeeEEEeCCCCCeEEcCC-------------CCCCceeeeeEEECCEEE
Q 028925 4 ARYDFACAEVNGKIYAVGGYGMDG----ESLSSAEVYDPDTDKWNLIES-------------LRRPRWGCFACSFDGKLY 66 (202)
Q Consensus 4 ~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~yd~~t~~W~~~~~-------------~~~~r~~~~~~~~~~~iy 66 (202)
.|.+|++++++++||-|||+=... ..--++.++|..+-.|+++++ .|..|.+|+++.+++++|
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y 92 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY 92 (392)
T ss_pred ccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence 589999999999999999963211 122478999999999998876 256799999999999999
Q ss_pred EEcCccCCCCCCcceEEEEeCCCCeEEecc-----CccceeeeeEEECCEEEEEeCC------CCCeEEEEeCCCCcEEE
Q 028925 67 VMGGRSSFTIGNSKFVDVYNPERHTWCQMK-----NGCVMVTAHAVVGKKLFCMEWK------NQRKLTIFDPEDNSWKM 135 (202)
Q Consensus 67 ~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-----~~~~~~~~~~~~~~~iyv~Gg~------~~~~~~~yd~~~~~W~~ 135 (202)
+.||+.+... ..+.+++|||++++|.+.. |..+..+++++.++.+|++||. .+++++.+|..+.+|+.
T Consensus 93 vWGGRND~eg-aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~ 171 (392)
T KOG4693|consen 93 VWGGRNDDEG-ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWRE 171 (392)
T ss_pred EEcCccCccc-ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeee
Confidence 9999976433 4567999999999999876 6777788999999999999982 36799999999999999
Q ss_pred ec-cCCCCCCCCCeeEEEECCeEEEEcccCCCC-----------ceeEEEeCCCCCCCcceee---cccCCceeeeEE
Q 028925 136 VP-VPLTGSSSIGFRFGILDGKLLLFSLEEEPS-----------YSTLLYDPNAASGSEWQTS---KIKPSGLCLCSV 198 (202)
Q Consensus 136 ~~-~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~-----------~~~~~yd~~~~~~~~W~~~---~~~p~~~~~~~~ 198 (202)
+. .-.+++.|..++.+++++.+||+||..... +.+..+|..|+ .|.+. +..|.+|.+.+.
T Consensus 172 ~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~---aW~r~p~~~~~P~GRRSHS~ 246 (392)
T KOG4693|consen 172 MHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATG---AWTRTPENTMKPGGRRSHST 246 (392)
T ss_pred hhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEecccc---ccccCCCCCcCCCcccccce
Confidence 87 456777899999999999999999965322 26888999999 99997 455766664444
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=182.74 Aligned_cols=181 Identities=25% Similarity=0.364 Sum_probs=157.8
Q ss_pred CccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcC---CCCCCceeeeeEEECCEEEEEcCccCCCCCC
Q 028925 2 NVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIE---SLRRPRWGCFACSFDGKLYVMGGRSSFTIGN 78 (202)
Q Consensus 2 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~ 78 (202)
|.+|.+|++++++++||++||.+.....+++++.||+.|++|..+. .+|.+|.+|++++++.++||+||...... .
T Consensus 110 p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~-~ 188 (482)
T KOG0379|consen 110 PSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD-S 188 (482)
T ss_pred CCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc-c
Confidence 6789999999999999999998754556789999999999998764 46899999999999999999999876553 5
Q ss_pred cceEEEEeCCCCeEEecc-----CccceeeeeEEECCEEEEEeCCC-----CCeEEEEeCCCCcEEEec-cCCCCCCCCC
Q 028925 79 SKFVDVYNPERHTWCQMK-----NGCVMVTAHAVVGKKLFCMEWKN-----QRKLTIFDPEDNSWKMVP-VPLTGSSSIG 147 (202)
Q Consensus 79 ~~~~~~yd~~~~~W~~~~-----~~~~~~~~~~~~~~~iyv~Gg~~-----~~~~~~yd~~~~~W~~~~-~~~~~~~~~~ 147 (202)
.+++++||+.+.+|.++. |.++..+++++++++++++||.. .++++++|..+..|..+. ....+..|..
T Consensus 189 ~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~ 268 (482)
T KOG0379|consen 189 LNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG 268 (482)
T ss_pred eeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcce
Confidence 789999999999999987 67788899999999999998744 478999999999999765 3455667999
Q ss_pred eeEEEECCeEEEEcccCCC----CceeEEEeCCCCCCCcceee
Q 028925 148 FRFGILDGKLLLFSLEEEP----SYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 148 ~~~~~~~~~i~v~gG~~~~----~~~~~~yd~~~~~~~~W~~~ 186 (202)
+..+..+.+++++||...+ ...++.||.++. .|..+
T Consensus 269 h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~---~w~~~ 308 (482)
T KOG0379|consen 269 HSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETL---VWSKV 308 (482)
T ss_pred eeeEEECCEEEEEcCCccccccccccccccccccc---ceeee
Confidence 9999999999999998763 458999999998 99988
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=154.44 Aligned_cols=182 Identities=17% Similarity=0.259 Sum_probs=145.2
Q ss_pred CccccceEEEEEC-CEEEEEcCcCCCCC-----ceeeeEEEeCCCCCeEEcCC--CCCCceeeeeEEECCEEEEEcCccC
Q 028925 2 NVARYDFACAEVN-GKIYAVGGYGMDGE-----SLSSAEVYDPDTDKWNLIES--LRRPRWGCFACSFDGKLYVMGGRSS 73 (202)
Q Consensus 2 ~~~r~~~~~~~~~-~~iyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~--~~~~r~~~~~~~~~~~iy~~gG~~~ 73 (202)
|.||+.|.++++- +.+|++||.-.... -.+++|+||+.+++|+++.. -|.+|.+|..++...+|+||||..+
T Consensus 119 P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd 198 (521)
T KOG1230|consen 119 PPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHD 198 (521)
T ss_pred cCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceec
Confidence 7899999999995 89999999632221 14799999999999998854 4889999999999999999999876
Q ss_pred CCCC--CcceEEEEeCCCCeEEecc-----CccceeeeeEEE-CCEEEEEeCCC-------------CCeEEEEeCCC--
Q 028925 74 FTIG--NSKFVDVYNPERHTWCQMK-----NGCVMVTAHAVV-GKKLFCMEWKN-------------QRKLTIFDPED-- 130 (202)
Q Consensus 74 ~~~~--~~~~~~~yd~~~~~W~~~~-----~~~~~~~~~~~~-~~~iyv~Gg~~-------------~~~~~~yd~~~-- 130 (202)
.... ..+++++||..+-+|+++. |.+|..+.+++. ++.|||.||.+ ..+++..++.+
T Consensus 199 ~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~ 278 (521)
T KOG1230|consen 199 SNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGR 278 (521)
T ss_pred CCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCC
Confidence 5322 3578999999999999997 445666666665 99999999832 35788999887
Q ss_pred ---CcEEEec-cCCCCCCCCCeeEEEE-CCeEEEEcccCC-----------CCceeEEEeCCCCCCCcceee
Q 028925 131 ---NSWKMVP-VPLTGSSSIGFRFGIL-DGKLLLFSLEEE-----------PSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 131 ---~~W~~~~-~~~~~~~~~~~~~~~~-~~~i~v~gG~~~-----------~~~~~~~yd~~~~~~~~W~~~ 186 (202)
=.|.++. .-..|++|.++++++. +++-|.|||... ..+.++.||...+ +|+..
T Consensus 279 ~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~n---rW~~~ 347 (521)
T KOG1230|consen 279 EDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRN---RWSEG 347 (521)
T ss_pred CcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccc---hhhHh
Confidence 3588886 3356667999999887 569999999643 1238999999999 99876
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.86 E-value=7.8e-21 Score=148.90 Aligned_cols=197 Identities=14% Similarity=0.128 Sum_probs=147.5
Q ss_pred CccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcC-------CCCCCceeeeeEEECCEEEEEcCccCC
Q 028925 2 NVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIE-------SLRRPRWGCFACSFDGKLYVMGGRSSF 74 (202)
Q Consensus 2 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~~~~iy~~gG~~~~ 74 (202)
|.+-..|..+..+.+||+|||+.+.+...+++|......-+|+++. ++|.||.+|+.+.+++|.|+|||..+.
T Consensus 79 PpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd 158 (830)
T KOG4152|consen 79 PPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND 158 (830)
T ss_pred CCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc
Confidence 4555677788889999999999877788888887777777777763 357899999999999999999998653
Q ss_pred CCC-------CcceEEEEeCCCC----eEEecc-----CccceeeeeEEE------CCEEEEEeC---CCCCeEEEEeCC
Q 028925 75 TIG-------NSKFVDVYNPERH----TWCQMK-----NGCVMVTAHAVV------GKKLFCMEW---KNQRKLTIFDPE 129 (202)
Q Consensus 75 ~~~-------~~~~~~~yd~~~~----~W~~~~-----~~~~~~~~~~~~------~~~iyv~Gg---~~~~~~~~yd~~ 129 (202)
..+ .++++++.+..-+ .|+..- |.++..+.++++ ..++||+|| ....++|..|++
T Consensus 159 seDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~ 238 (830)
T KOG4152|consen 159 SEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLD 238 (830)
T ss_pred ccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecc
Confidence 321 2567777766533 487643 556666666665 347999996 457899999999
Q ss_pred CCcEEEec-cCCCCCCCCCeeEEEECCeEEEEcccCCC----------------CceeEEEeCCCCCCCcceee------
Q 028925 130 DNSWKMVP-VPLTGSSSIGFRFGILDGKLLLFSLEEEP----------------SYSTLLYDPNAASGSEWQTS------ 186 (202)
Q Consensus 130 ~~~W~~~~-~~~~~~~~~~~~~~~~~~~i~v~gG~~~~----------------~~~~~~yd~~~~~~~~W~~~------ 186 (202)
+-+|.+.. .-..+..|.-+..+.+++++|||||.... ..++-.+++++. .|..+
T Consensus 239 Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~---~W~tl~~d~~e 315 (830)
T KOG4152|consen 239 TLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM---AWETLLMDTLE 315 (830)
T ss_pred eeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecch---heeeeeecccc
Confidence 99999986 22334458888899999999999996311 115666788898 99998
Q ss_pred -cccCCcee-eeEEEee
Q 028925 187 -KIKPSGLC-LCSVTIK 201 (202)
Q Consensus 187 -~~~p~~~~-~~~~~~~ 201 (202)
...|.+|. ||+++|.
T Consensus 316 d~tiPR~RAGHCAvAig 332 (830)
T KOG4152|consen 316 DNTIPRARAGHCAVAIG 332 (830)
T ss_pred ccccccccccceeEEec
Confidence 23565555 9999885
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=5e-19 Score=138.87 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=142.8
Q ss_pred CccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEE---cCCCCCCceeeeeEEECCEEEEEcCccCCCCCC
Q 028925 2 NVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNL---IESLRRPRWGCFACSFDGKLYVMGGRSSFTIGN 78 (202)
Q Consensus 2 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~---~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~ 78 (202)
|.||.+|.++++.+-|.||||-+ +...+.+.+||..+|+|.. ..+.|.+...+..+..+.+||+|||..+... .
T Consensus 30 PrpRHGHRAVaikELiviFGGGN--EGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGk-Y 106 (830)
T KOG4152|consen 30 PRPRHGHRAVAIKELIVIFGGGN--EGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGK-Y 106 (830)
T ss_pred CCccccchheeeeeeEEEecCCc--ccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeecc-c
Confidence 78999999999999999999975 4456789999999999964 3577888888888888999999999765432 3
Q ss_pred cceEEEEeCCCCeEEecc---------CccceeeeeEEECCEEEEEeCC-------------CCCeEEEEeCCCC----c
Q 028925 79 SKFVDVYNPERHTWCQMK---------NGCVMVTAHAVVGKKLFCMEWK-------------NQRKLTIFDPEDN----S 132 (202)
Q Consensus 79 ~~~~~~yd~~~~~W~~~~---------~~~~~~~~~~~~~~~iyv~Gg~-------------~~~~~~~yd~~~~----~ 132 (202)
.++++........|.++. |-++..++.++++++-|+|||- ..+++++.++... .
T Consensus 107 sNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~ 186 (830)
T KOG4152|consen 107 SNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVA 186 (830)
T ss_pred cchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEE
Confidence 344544444455677765 3355667788899999999982 1356777766533 4
Q ss_pred EEEec-cCCCCCCCCCeeEEEE------CCeEEEEcccCCCC-ceeEEEeCCCCCCCcceee---cccCCcee-eeEEEe
Q 028925 133 WKMVP-VPLTGSSSIGFRFGIL------DGKLLLFSLEEEPS-YSTLLYDPNAASGSEWQTS---KIKPSGLC-LCSVTI 200 (202)
Q Consensus 133 W~~~~-~~~~~~~~~~~~~~~~------~~~i~v~gG~~~~~-~~~~~yd~~~~~~~~W~~~---~~~p~~~~-~~~~~~ 200 (202)
|.+.- --..+..|..+.++++ ..+++|+||.+.-. .++|.+|+++- +|.+. +..|-+|+ |.+.+|
T Consensus 187 W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl---~W~kp~~~G~~PlPRSLHsa~~I 263 (830)
T KOG4152|consen 187 WDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTL---TWNKPSLSGVAPLPRSLHSATTI 263 (830)
T ss_pred EecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEeccee---ecccccccCCCCCCcccccceee
Confidence 88864 1223335677776666 35899999987543 58999999999 99997 66777777 555555
Q ss_pred e
Q 028925 201 K 201 (202)
Q Consensus 201 ~ 201 (202)
.
T Consensus 264 G 264 (830)
T KOG4152|consen 264 G 264 (830)
T ss_pred c
Confidence 3
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=2.5e-17 Score=124.26 Aligned_cols=186 Identities=22% Similarity=0.324 Sum_probs=140.5
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCC--CCCeEEcCCCC-CCceeeeeEEECCEEEEEcCccCCCC-
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPD--TDKWNLIESLR-RPRWGCFACSFDGKLYVMGGRSSFTI- 76 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iy~~gG~~~~~~- 76 (202)
+|.+-.+-+.+..++.+||-=|.. + ...++.|++ .+.|++++..| .+|.++..+.++++||++||......
T Consensus 33 lPvg~KnG~Ga~ig~~~YVGLGs~--G---~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~ 107 (381)
T COG3055 33 LPVGFKNGAGALIGDTVYVGLGSA--G---TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSS 107 (381)
T ss_pred CCccccccccceecceEEEEeccC--C---ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCC
Confidence 456666667778889999975532 1 346777776 45799999876 58899999999999999999865443
Q ss_pred --CCcceEEEEeCCCCeEEecc---CccceeeeeEEECC-EEEEEeCCC-------------------------------
Q 028925 77 --GNSKFVDVYNPERHTWCQMK---NGCVMVTAHAVVGK-KLFCMEWKN------------------------------- 119 (202)
Q Consensus 77 --~~~~~~~~yd~~~~~W~~~~---~~~~~~~~~~~~~~-~iyv~Gg~~------------------------------- 119 (202)
...+++++|||.+++|+++. |.....+..+..++ +||++||-+
T Consensus 108 ~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~ 187 (381)
T COG3055 108 SPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK 187 (381)
T ss_pred CceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence 23467999999999999997 43333344556665 999999821
Q ss_pred -------CCeEEEEeCCCCcEEEec-cCCCCCCCCCeeEEEECCeEEEEcccCCCC---ceeEEEeCCCCCCCcceeecc
Q 028925 120 -------QRKLTIFDPEDNSWKMVP-VPLTGSSSIGFRFGILDGKLLLFSLEEEPS---YSTLLYDPNAASGSEWQTSKI 188 (202)
Q Consensus 120 -------~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~---~~~~~yd~~~~~~~~W~~~~~ 188 (202)
...+..|||.+++|+.+. .|..+ +++++++.-++++.++.|+..++ ..+++++...+. -+|..+++
T Consensus 188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~--~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~-~~w~~l~~ 264 (381)
T COG3055 188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYG--NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDN-LKWLKLSD 264 (381)
T ss_pred CHHHhcccccccccccccchhhhcCcCcccC--ccCcceeecCCeEEEEcceecCCccccceeEEEeccCc-eeeeeccC
Confidence 246789999999999998 55555 88888778899999999998776 367777776431 28999988
Q ss_pred cCCcee
Q 028925 189 KPSGLC 194 (202)
Q Consensus 189 ~p~~~~ 194 (202)
+|.+.+
T Consensus 265 lp~~~~ 270 (381)
T COG3055 265 LPAPIG 270 (381)
T ss_pred CCCCCC
Confidence 887765
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=3.5e-16 Score=118.10 Aligned_cols=191 Identities=23% Similarity=0.367 Sum_probs=131.0
Q ss_pred ccccceEEEEECCEEEEEcCcCCCC----CceeeeEEEeCCCCCeEEcCC-CCCCceeeeeEEECC-EEEEEcCccCCC-
Q 028925 3 VARYDFACAEVNGKIYAVGGYGMDG----ESLSSAEVYDPDTDKWNLIES-LRRPRWGCFACSFDG-KLYVMGGRSSFT- 75 (202)
Q Consensus 3 ~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~~yd~~t~~W~~~~~-~~~~r~~~~~~~~~~-~iy~~gG~~~~~- 75 (202)
.+|.+...++++++|||+||..-.. +..+++|+|||++|+|.++.. .|.....+.++.+++ +||++||.....
T Consensus 81 ~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if 160 (381)
T COG3055 81 GARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIF 160 (381)
T ss_pred cccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhh
Confidence 4789999999999999999975322 346899999999999999865 355667788888887 999999975210
Q ss_pred -------------------------------CCCcceEEEEeCCCCeEEeccCccc---eeeeeEEECCEEEEEeC----
Q 028925 76 -------------------------------IGNSKFVDVYNPERHTWCQMKNGCV---MVTAHAVVGKKLFCMEW---- 117 (202)
Q Consensus 76 -------------------------------~~~~~~~~~yd~~~~~W~~~~~~~~---~~~~~~~~~~~iyv~Gg---- 117 (202)
..-.+.+..|||.+++|+.+...|. ..++.+.-++++.++.|
T Consensus 161 ~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKp 240 (381)
T COG3055 161 NGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKP 240 (381)
T ss_pred hhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecC
Confidence 0012568899999999999873222 22223334666887865
Q ss_pred -CCCCeEEEEeC--CCCcEEEeccCCCCCCC--CCeeEE---EECCeEEEEcccCCC---------------------Cc
Q 028925 118 -KNQRKLTIFDP--EDNSWKMVPVPLTGSSS--IGFRFG---ILDGKLLLFSLEEEP---------------------SY 168 (202)
Q Consensus 118 -~~~~~~~~yd~--~~~~W~~~~~~~~~~~~--~~~~~~---~~~~~i~v~gG~~~~---------------------~~ 168 (202)
-++..+..++. ..-+|..+...+.+... .+.+.+ ..++.+.|.||.+.+ ..
T Consensus 241 GLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~ 320 (381)
T COG3055 241 GLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNS 320 (381)
T ss_pred CccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhc
Confidence 23445556655 45579999622221111 223222 347888898885422 12
Q ss_pred eeEEEeCCCCCCCcceeecccCCceeeeEE
Q 028925 169 STLLYDPNAASGSEWQTSKIKPSGLCLCSV 198 (202)
Q Consensus 169 ~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~ 198 (202)
.|+.+| .+ .|+.++.||.+++.++.
T Consensus 321 ~Vy~~d--~g---~Wk~~GeLp~~l~YG~s 345 (381)
T COG3055 321 EVYIFD--NG---SWKIVGELPQGLAYGVS 345 (381)
T ss_pred eEEEEc--CC---ceeeecccCCCccceEE
Confidence 677777 66 89999999999985544
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.63 E-value=1e-15 Score=86.13 Aligned_cols=50 Identities=38% Similarity=0.815 Sum_probs=46.1
Q ss_pred cccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCc
Q 028925 4 ARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR 53 (202)
Q Consensus 4 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r 53 (202)
||.+|++++++++|||+||.......++++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 69999999999999999999755667899999999999999999999887
No 30
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.50 E-value=4.3e-14 Score=78.48 Aligned_cols=47 Identities=36% Similarity=0.726 Sum_probs=42.9
Q ss_pred cccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC
Q 028925 4 ARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR 50 (202)
Q Consensus 4 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 50 (202)
||.+|++++++++|||+||.+.....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 69999999999999999999866778999999999999999999875
No 31
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.39 E-value=2.1e-13 Score=107.31 Aligned_cols=162 Identities=17% Similarity=0.205 Sum_probs=118.8
Q ss_pred CccccceEEEEECC--EEEEEcCcCCCCCceeeeEEEeCCCCCeEEcC---CCCCCceeeeeEEE--CCEEEEEcCccCC
Q 028925 2 NVARYDFACAEVNG--KIYAVGGYGMDGESLSSAEVYDPDTDKWNLIE---SLRRPRWGCFACSF--DGKLYVMGGRSSF 74 (202)
Q Consensus 2 ~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~r~~~~~~~~--~~~iy~~gG~~~~ 74 (202)
|..|.+|.++...+ .||+.||.+. .+.+.++|.|+...+.|..+. ..|..|.+|..+.. ..|+|++|-+-+.
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG-~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDG-TQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDS 336 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCccc-chhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccc
Confidence 45699999998855 9999999973 456789999999999998773 46889999998875 5599999976443
Q ss_pred CC----CCcceEEEEeCCCCeEEecc--------CccceeeeeEEECCE--EEEEeCCC-------CCeEEEEeCCCCcE
Q 028925 75 TI----GNSKFVDVYNPERHTWCQMK--------NGCVMVTAHAVVGKK--LFCMEWKN-------QRKLTIFDPEDNSW 133 (202)
Q Consensus 75 ~~----~~~~~~~~yd~~~~~W~~~~--------~~~~~~~~~~~~~~~--iyv~Gg~~-------~~~~~~yd~~~~~W 133 (202)
+. ....++|+||..++.|..+. |....-+.+++.+.+ |||+||.. ...++.||.....|
T Consensus 337 S~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w 416 (723)
T KOG2437|consen 337 SVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTW 416 (723)
T ss_pred ccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccH
Confidence 22 13467999999999999987 233344777888766 99999843 35789999999999
Q ss_pred EEeccC------CC--CCCCCCee--EEEECCeEEEEcccC
Q 028925 134 KMVPVP------LT--GSSSIGFR--FGILDGKLLLFSLEE 164 (202)
Q Consensus 134 ~~~~~~------~~--~~~~~~~~--~~~~~~~i~v~gG~~ 164 (202)
..+... .. ...|-+++ .+..+..+|++||..
T Consensus 417 ~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~ 457 (723)
T KOG2437|consen 417 KLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQR 457 (723)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcc
Confidence 987511 00 11122222 334577899988754
No 32
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.39 E-value=5e-13 Score=74.81 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=32.2
Q ss_pred cccceEEEEE-CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC
Q 028925 4 ARYDFACAEV-NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR 50 (202)
Q Consensus 4 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~ 50 (202)
||.+|+++.+ +++|||+||.+.....++++|+||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 7999999999 5899999999866678899999999999999998876
No 33
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.36 E-value=2.7e-12 Score=71.72 Aligned_cols=47 Identities=32% Similarity=0.715 Sum_probs=41.0
Q ss_pred cccceEEEEECCEEEEEcCc--CCCCCceeeeEEEeCCCCCeEEcCCCC
Q 028925 4 ARYDFACAEVNGKIYAVGGY--GMDGESLSSAEVYDPDTDKWNLIESLR 50 (202)
Q Consensus 4 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~~ 50 (202)
||.+|++++++++|||+||. +......+++++||+.+++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 333455789999999999999998764
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.36 E-value=2.8e-12 Score=71.65 Aligned_cols=48 Identities=38% Similarity=0.648 Sum_probs=42.8
Q ss_pred CCEEEEEcCcC-CCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEE
Q 028925 14 NGKIYAVGGYG-MDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSF 61 (202)
Q Consensus 14 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 61 (202)
+++|||+||.+ .....++++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 58999999997 3456789999999999999999999999999998863
No 35
>PF13964 Kelch_6: Kelch motif
Probab=99.29 E-value=1.2e-11 Score=69.42 Aligned_cols=48 Identities=38% Similarity=0.589 Sum_probs=41.2
Q ss_pred CceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccc
Q 028925 52 PRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV 100 (202)
Q Consensus 52 ~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 100 (202)
+|..+++++++++||++||..+. ....+++++||+++++|+.+++++.
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCC
Confidence 58889999999999999999764 2257889999999999999996653
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.21 E-value=3.1e-11 Score=66.85 Aligned_cols=47 Identities=34% Similarity=0.590 Sum_probs=40.0
Q ss_pred CceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCcc
Q 028925 52 PRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGC 99 (202)
Q Consensus 52 ~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 99 (202)
+|..+++++++++||++||... .....+++++||+.+++|+.+++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~-~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDG-NNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBES-TSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecc-cCceeeeEEEEeCCCCEEEEcCCCC
Confidence 5889999999999999999987 2336789999999999999998653
No 37
>smart00612 Kelch Kelch domain.
Probab=99.20 E-value=3.8e-11 Score=66.35 Aligned_cols=47 Identities=47% Similarity=0.870 Sum_probs=41.2
Q ss_pred EEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECC
Q 028925 16 KIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDG 63 (202)
Q Consensus 16 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 63 (202)
+||++||... ...++++++||+.+++|+.+++|+.+|..++++++++
T Consensus 1 ~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 5899999863 3557899999999999999999999999999888765
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.14 E-value=2.5e-10 Score=63.65 Aligned_cols=47 Identities=34% Similarity=0.599 Sum_probs=39.1
Q ss_pred CceeeeeEEECCEEEEEcCc-cCCCCCCcceEEEEeCCCCeEEeccCc
Q 028925 52 PRWGCFACSFDGKLYVMGGR-SSFTIGNSKFVDVYNPERHTWCQMKNG 98 (202)
Q Consensus 52 ~r~~~~~~~~~~~iy~~gG~-~~~~~~~~~~~~~yd~~~~~W~~~~~~ 98 (202)
+|..|++++++++||++||. .........++++||+++++|++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 58889999999999999999 222333567899999999999998754
No 39
>PF13854 Kelch_5: Kelch motif
Probab=99.10 E-value=3.3e-10 Score=60.90 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=35.9
Q ss_pred CCccccceEEEEECCEEEEEcCcCC-CCCceeeeEEEeCCC
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGM-DGESLSSAEVYDPDT 40 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t 40 (202)
+|.+|.+|++++++++|||+||... ....++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 6999999999999999999999983 566789999999876
No 40
>PLN02772 guanylate kinase
Probab=99.06 E-value=1.9e-09 Score=84.58 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=66.9
Q ss_pred ccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEc---CCCCCCceeeeeEEE-CCEEEEEcCccCCCCCC
Q 028925 3 VARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLI---ESLRRPRWGCFACSF-DGKLYVMGGRSSFTIGN 78 (202)
Q Consensus 3 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~ 78 (202)
.|+..++++++++++||+||.+......+.+++||..|++|... ...|.+|.+|+++.+ +++|+++++-...
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---- 98 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---- 98 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC----
Confidence 58899999999999999999876544678999999999999765 456899999999998 6889999765432
Q ss_pred cceEEEEeCCC
Q 028925 79 SKFVDVYNPER 89 (202)
Q Consensus 79 ~~~~~~yd~~~ 89 (202)
..++|.....|
T Consensus 99 ~~~~w~l~~~t 109 (398)
T PLN02772 99 DDSIWFLEVDT 109 (398)
T ss_pred ccceEEEEcCC
Confidence 35677665444
No 41
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=99.05 E-value=2.8e-08 Score=73.66 Aligned_cols=172 Identities=15% Similarity=0.270 Sum_probs=111.0
Q ss_pred eEEEEECCEEEEEcCcCCC---------------------CCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEE-ECCEE
Q 028925 8 FACAEVNGKIYAVGGYGMD---------------------GESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS-FDGKL 65 (202)
Q Consensus 8 ~~~~~~~~~iyv~GG~~~~---------------------~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~i 65 (202)
|..+..++++.++-.-+.. .+.......||+.+++++.+.. ..--++++.+. -+|++
T Consensus 2 h~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~l 80 (243)
T PF07250_consen 2 HMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRL 80 (243)
T ss_pred eEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccC-CCCCcccCcCCCCCCCE
Confidence 4556678888887542110 0112345679999999998863 34444444343 48999
Q ss_pred EEEcCccCCCCCCcceEEEEeCCC----CeEEecc---Cccceeee-eEEECCEEEEEeCCCCCeEEEEeCCCC-----c
Q 028925 66 YVMGGRSSFTIGNSKFVDVYNPER----HTWCQMK---NGCVMVTA-HAVVGKKLFCMEWKNQRKLTIFDPEDN-----S 132 (202)
Q Consensus 66 y~~gG~~~~~~~~~~~~~~yd~~~----~~W~~~~---~~~~~~~~-~~~~~~~iyv~Gg~~~~~~~~yd~~~~-----~ 132 (202)
.+.||..+ ..+.+..|+|.+ ..|.+.+ ..+|+..+ ....+|+++|+||......+.+.+... .
T Consensus 81 l~tGG~~~----G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~ 156 (243)
T PF07250_consen 81 LQTGGDND----GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVT 156 (243)
T ss_pred EEeCCCCc----cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCcee
Confidence 99999865 245677888765 6798876 23444444 455699999999976556665554322 2
Q ss_pred EEEecc--CCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcc-eeecccCCc
Q 028925 133 WKMVPV--PLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEW-QTSKIKPSG 192 (202)
Q Consensus 133 W~~~~~--~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W-~~~~~~p~~ 192 (202)
|..+.. ...+...+-+....-+|+||+++.. ...+||+.++ ++ ++++.+|..
T Consensus 157 ~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-----~s~i~d~~~n---~v~~~lP~lPg~ 211 (243)
T PF07250_consen 157 LPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-----GSIIYDYKTN---TVVRTLPDLPGG 211 (243)
T ss_pred eecchhhhccCccccCceEEEcCCCCEEEEEcC-----CcEEEeCCCC---eEEeeCCCCCCC
Confidence 222321 1223345566677779999999853 4688999998 77 778888753
No 42
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.01 E-value=5.6e-10 Score=88.40 Aligned_cols=133 Identities=13% Similarity=0.191 Sum_probs=99.6
Q ss_pred CCCceeeeeEEECC--EEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-----CccceeeeeEEE--CCEEEEEeC---
Q 028925 50 RRPRWGCFACSFDG--KLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-----NGCVMVTAHAVV--GKKLFCMEW--- 117 (202)
Q Consensus 50 ~~~r~~~~~~~~~~--~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-----~~~~~~~~~~~~--~~~iyv~Gg--- 117 (202)
|..|.+|..+...+ .||++||.++.. ...+.|.|+-..++|..+- |..+.-+.++.. ..++|++|-
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~ 335 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQ--DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLD 335 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccch--hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccc
Confidence 57789999998755 899999998755 4678999999999999986 444444444443 458999983
Q ss_pred -------CCCCeEEEEeCCCCcEEEecc----CCCCCCCCCeeEEEECCe--EEEEcccCCCC-----ceeEEEeCCCCC
Q 028925 118 -------KNQRKLTIFDPEDNSWKMVPV----PLTGSSSIGFRFGILDGK--LLLFSLEEEPS-----YSTLLYDPNAAS 179 (202)
Q Consensus 118 -------~~~~~~~~yd~~~~~W~~~~~----~~~~~~~~~~~~~~~~~~--i~v~gG~~~~~-----~~~~~yd~~~~~ 179 (202)
+...++|.||.++++|.-+.. ..-|..-.-+.+++.+++ |||+||..... ..++.|+....
T Consensus 336 sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~- 414 (723)
T KOG2437|consen 336 SSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQ- 414 (723)
T ss_pred cccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCc-
Confidence 124689999999999999861 122334556678888877 99999965322 26899999998
Q ss_pred CCcceeec
Q 028925 180 GSEWQTSK 187 (202)
Q Consensus 180 ~~~W~~~~ 187 (202)
.|..+.
T Consensus 415 --~w~~l~ 420 (723)
T KOG2437|consen 415 --TWKLLR 420 (723)
T ss_pred --cHHHHH
Confidence 898773
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.98 E-value=8.8e-10 Score=61.47 Aligned_cols=47 Identities=32% Similarity=0.560 Sum_probs=30.1
Q ss_pred CceeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCcc
Q 028925 52 PRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGC 99 (202)
Q Consensus 52 ~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 99 (202)
||.+|+++.+ +++|||+||..... ...+++++||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~-~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG-SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T-EE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC-cccCCEEEEECCCCEEEECCCCC
Confidence 6889999988 58999999997653 25678999999999999997543
No 44
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.80 E-value=1.7e-08 Score=56.14 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=35.9
Q ss_pred CCeEEEEcccCC-CC---ceeEEEeCCCCCCCcceeecccCCceeeeEEE
Q 028925 154 DGKLLLFSLEEE-PS---YSTLLYDPNAASGSEWQTSKIKPSGLCLCSVT 199 (202)
Q Consensus 154 ~~~i~v~gG~~~-~~---~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~~ 199 (202)
|++|||+||... .. .++++||++++ +|++++.+|.+|.+.+++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~---~W~~~~~~P~~R~~h~~~ 47 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTN---TWTRIGDLPPPRSGHTAT 47 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCC---EEEECCCCCCCccceEEE
Confidence 689999999873 22 38999999999 999999999999955554
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.64 E-value=1.1e-07 Score=50.95 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=33.9
Q ss_pred CCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCC
Q 028925 49 LRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 49 ~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
+|.+|..|+++.++++||++||.........+++++||..+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 47899999999999999999999842333567899999875
No 46
>PLN02772 guanylate kinase
Probab=98.60 E-value=5.5e-07 Score=70.95 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=61.8
Q ss_pred cceeeeeEEECCEEEEEeCCC-----CCeEEEEeCCCCcEEEec-cCCCCCCCCCeeEEEE-CCeEEEEcccCCCCceeE
Q 028925 99 CVMVTAHAVVGKKLFCMEWKN-----QRKLTIFDPEDNSWKMVP-VPLTGSSSIGFRFGIL-DGKLLLFSLEEEPSYSTL 171 (202)
Q Consensus 99 ~~~~~~~~~~~~~iyv~Gg~~-----~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~~~ 171 (202)
++..+.++.+++++||+||.+ .+.+++||+.+++|.... .-.+|.++.+++++++ +++|+|+++...+..++|
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceE
Confidence 445577889999999999832 358999999999999986 2233445778888876 789999998777777888
Q ss_pred EEeCCC
Q 028925 172 LYDPNA 177 (202)
Q Consensus 172 ~yd~~~ 177 (202)
.+...|
T Consensus 104 ~l~~~t 109 (398)
T PLN02772 104 FLEVDT 109 (398)
T ss_pred EEEcCC
Confidence 887765
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.60 E-value=1.5e-05 Score=59.21 Aligned_cols=151 Identities=17% Similarity=0.325 Sum_probs=93.4
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCce---e-eeeEEECC-----EEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccc-
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRW---G-CFACSFDG-----KLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV- 100 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~---~-~~~~~~~~-----~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~- 100 (202)
..+.++||.|++|..+|+++.++. . ..+.-++. |+..+....... ....+++|+..+++|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~--~~~~~~Vys~~~~~Wr~~~~~~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR--NQSEHQVYTLGSNSWRTIECSPPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC--CCccEEEEEeCCCCccccccCCCC
Confidence 468999999999999986543211 1 11112221 455443321111 23578999999999999872111
Q ss_pred --eeeeeEEECCEEEEEeCC---CC-CeEEEEeCCCCcEEE-eccCCCCC-CCCCeeEEEECCeEEEEcccCC-CCceeE
Q 028925 101 --MVTAHAVVGKKLFCMEWK---NQ-RKLTIFDPEDNSWKM-VPVPLTGS-SSIGFRFGILDGKLLLFSLEEE-PSYSTL 171 (202)
Q Consensus 101 --~~~~~~~~~~~iyv~Gg~---~~-~~~~~yd~~~~~W~~-~~~~~~~~-~~~~~~~~~~~~~i~v~gG~~~-~~~~~~ 171 (202)
.....+.++|.||-+... .. ..+..||..+.+|+. ++.|.... ......++..+|+|.++..... ....+|
T Consensus 92 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IW 171 (230)
T TIGR01640 92 HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLW 171 (230)
T ss_pred ccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEE
Confidence 112256789999988631 12 269999999999995 65332221 1224567788999998765432 234677
Q ss_pred EEe-CCCCCCCcceee
Q 028925 172 LYD-PNAASGSEWQTS 186 (202)
Q Consensus 172 ~yd-~~~~~~~~W~~~ 186 (202)
+.+ .+.+ +|+++
T Consensus 172 vl~d~~~~---~W~k~ 184 (230)
T TIGR01640 172 VLNDAGKQ---EWSKL 184 (230)
T ss_pred EECCCCCC---ceeEE
Confidence 775 3455 79886
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.55 E-value=2.3e-06 Score=63.56 Aligned_cols=112 Identities=21% Similarity=0.413 Sum_probs=76.3
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCC----CCeEEcC-CCCCCceeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEeC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDT----DKWNLIE-SLRRPRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd~ 87 (202)
+|++.+.||... -.+.+..|++.+ ..|.+.+ .|..+|.++++..+ +|+++|+||.... ..|.+.+
T Consensus 77 dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~ 147 (243)
T PF07250_consen 77 DGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPP 147 (243)
T ss_pred CCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCC------cccccCC
Confidence 889999999753 234566778765 5798775 58999999999986 8999999998632 2343333
Q ss_pred CC-----CeEEecc------CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcE-EEec
Q 028925 88 ER-----HTWCQMK------NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSW-KMVP 137 (202)
Q Consensus 88 ~~-----~~W~~~~------~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W-~~~~ 137 (202)
.. ..|..+. +...+.......+|+|++++ .....+||++++++ +.++
T Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a---n~~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 148 KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA---NRGSIIYDYKTNTVVRTLP 206 (243)
T ss_pred ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE---cCCcEEEeCCCCeEEeeCC
Confidence 11 1222222 11223344566699999996 35678899999987 5665
No 49
>smart00612 Kelch Kelch domain.
Probab=98.47 E-value=2.5e-07 Score=50.69 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=33.0
Q ss_pred eEEEEcccCC--CCceeEEEeCCCCCCCcceeecccCCceeeeEE
Q 028925 156 KLLLFSLEEE--PSYSTLLYDPNAASGSEWQTSKIKPSGLCLCSV 198 (202)
Q Consensus 156 ~i~v~gG~~~--~~~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~ 198 (202)
+||++||... ....+++||++++ +|+.++.||.++..+++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~r~~~~~ 42 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETN---KWTPLPSMPTPRSGHGV 42 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCC---eEccCCCCCCccccceE
Confidence 5899999764 2347999999999 99999999999984444
No 50
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.31 E-value=0.00017 Score=54.03 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=72.1
Q ss_pred CCccccceEEEEE---C--CEEEEE-cCcCCCCCceeeeEEEeCCCCCe-----------EEcCCCCCCceeeeeEEE--
Q 028925 1 MNVARYDFACAEV---N--GKIYAV-GGYGMDGESLSSAEVYDPDTDKW-----------NLIESLRRPRWGCFACSF-- 61 (202)
Q Consensus 1 m~~~r~~~~~~~~---~--~~iyv~-GG~~~~~~~~~~~~~yd~~t~~W-----------~~~~~~~~~r~~~~~~~~-- 61 (202)
||.-|.-+.+... + -..|++ ||.+.+.....++|+....+... +.+.+.|.+|.+|++.++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~S 98 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHS 98 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEE
Confidence 4555655444441 2 255665 88876666667788776655442 134678999999998875
Q ss_pred CCE--EEEEcCccCCCC------------CCcceEEEEeCCCCeEEecc-C---ccceeeeeEEECCEEEEEeCC
Q 028925 62 DGK--LYVMGGRSSFTI------------GNSKFVDVYNPERHTWCQMK-N---GCVMVTAHAVVGKKLFCMEWK 118 (202)
Q Consensus 62 ~~~--iy~~gG~~~~~~------------~~~~~~~~yd~~~~~W~~~~-~---~~~~~~~~~~~~~~iyv~Gg~ 118 (202)
.|| ..+|||++--.. +....++..|++-+-.+.-. | ....++.+..-++.+|++||.
T Consensus 99 rGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGH 173 (337)
T PF03089_consen 99 RGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGH 173 (337)
T ss_pred CCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccE
Confidence 444 777899853111 11234667777665444332 1 233455566669999999994
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.29 E-value=0.00017 Score=53.66 Aligned_cols=145 Identities=15% Similarity=0.199 Sum_probs=87.7
Q ss_pred eeeEEEeCCCCCeEEcCCCCCC-ceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEe-cc-Cccce----ee
Q 028925 31 SSAEVYDPDTDKWNLIESLRRP-RWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQ-MK-NGCVM----VT 103 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~-r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~-~~-~~~~~----~~ 103 (202)
..+++|+..+++|+.+...+.. ......+.++|.||-+....... ....+..||..+++|.. ++ |.... ..
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~--~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~ 147 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN--PDYFIVSFDVSSERFKEFIPLPCGNSDSVDYL 147 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCC--CcEEEEEEEcccceEeeeeecCccccccccce
Confidence 4689999999999988643221 11222667899999986432211 11268999999999995 66 32211 23
Q ss_pred eeEEECCEEEEEeCC---CCCeEEEEe-CCCCcEEEec-cCC--CCCCCC--CeeEEEECCeEEEEcccCCCCceeEEEe
Q 028925 104 AHAVVGKKLFCMEWK---NQRKLTIFD-PEDNSWKMVP-VPL--TGSSSI--GFRFGILDGKLLLFSLEEEPSYSTLLYD 174 (202)
Q Consensus 104 ~~~~~~~~iyv~Gg~---~~~~~~~yd-~~~~~W~~~~-~~~--~~~~~~--~~~~~~~~~~i~v~gG~~~~~~~~~~yd 174 (202)
.....+|+|.++... ..-.+|..+ .....|++.- .+. ...... ....+..+++|++.... .....+..||
T Consensus 148 ~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~-~~~~~~~~y~ 226 (230)
T TIGR01640 148 SLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED-ENPFYIFYYN 226 (230)
T ss_pred EEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC-CCceEEEEEe
Confidence 346668998887642 123566664 4456799853 121 111111 12345668888887643 2223599999
Q ss_pred CCCC
Q 028925 175 PNAA 178 (202)
Q Consensus 175 ~~~~ 178 (202)
++++
T Consensus 227 ~~~~ 230 (230)
T TIGR01640 227 VGEN 230 (230)
T ss_pred ccCC
Confidence 9874
No 52
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=98.25 E-value=0.0001 Score=58.04 Aligned_cols=118 Identities=26% Similarity=0.320 Sum_probs=81.3
Q ss_pred ECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCC-----cceEEEEeC
Q 028925 13 VNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGN-----SKFVDVYNP 87 (202)
Q Consensus 13 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~-----~~~~~~yd~ 87 (202)
.+++|+.++.. ....+||..+..-...|.|..+.....++.++++||++.......... ..++..|++
T Consensus 75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~ 147 (342)
T PF07893_consen 75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP 147 (342)
T ss_pred cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence 48899998643 347899999999998898888888888888999999998764332211 223444552
Q ss_pred --------CCCeEEeccCccce---------eeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEEec
Q 028925 88 --------ERHTWCQMKNGCVM---------VTAHAVV-GKKLFCMEWKNQRKLTIFDPEDNSWKMVP 137 (202)
Q Consensus 88 --------~~~~W~~~~~~~~~---------~~~~~~~-~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~ 137 (202)
..-.|+.+++.|.. ..+.+++ +..|+|---......+.||+++.+|+++.
T Consensus 148 ~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 148 PPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 23478888743211 3344555 66788742101136999999999999997
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.96 E-value=0.0041 Score=49.11 Aligned_cols=113 Identities=16% Similarity=0.288 Sum_probs=69.5
Q ss_pred ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccC--ccceeeeeEEECCEEEEEeCCCCC---------eEEEE--e
Q 028925 61 FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKN--GCVMVTAHAVVGKKLFCMEWKNQR---------KLTIF--D 127 (202)
Q Consensus 61 ~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~~~~~~~~~~~iyv~Gg~~~~---------~~~~y--d 127 (202)
.+.+|+.++.. ....+||+.+..-..+|. .+.....++.++++||++...... .++.+ +
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~ 146 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR 146 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence 48888888543 358899999998887773 223334556678899999742111 44444 4
Q ss_pred C--------CCCcEEEeccCCCCCCCC-----CeeEEEE-CCeEEE-EcccCCCCceeEEEeCCCCCCCcceeec
Q 028925 128 P--------EDNSWKMVPVPLTGSSSI-----GFRFGIL-DGKLLL-FSLEEEPSYSTLLYDPNAASGSEWQTSK 187 (202)
Q Consensus 128 ~--------~~~~W~~~~~~~~~~~~~-----~~~~~~~-~~~i~v-~gG~~~~~~~~~~yd~~~~~~~~W~~~~ 187 (202)
+ ..=.|+.++.|+...... -.+.+++ +..|+| +.+.. ...+.||.++. +|++++
T Consensus 147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~---~GTysfDt~~~---~W~~~G 215 (342)
T PF07893_consen 147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR---WGTYSFDTESH---EWRKHG 215 (342)
T ss_pred cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc---eEEEEEEcCCc---ceeecc
Confidence 2 122588886332221211 2344455 678888 33221 24899999998 999983
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.76 E-value=0.011 Score=47.69 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=89.8
Q ss_pred EEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCCC--------CCceeeeeEEECCEEEEEcCccCCCCCC
Q 028925 9 ACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESLR--------RPRWGCFACSFDGKLYVMGGRSSFTIGN 78 (202)
Q Consensus 9 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~--------~~r~~~~~~~~~~~iy~~gG~~~~~~~~ 78 (202)
+-++.+++||+.... ..++.+|..+.+ |+.-..-. ..+.....+..++++|+.+.
T Consensus 64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------- 128 (394)
T PRK11138 64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------- 128 (394)
T ss_pred ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC--------
Confidence 345679999998642 257888887665 76432110 11222334567888987532
Q ss_pred cceEEEEeCCCC--eEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEEEC
Q 028925 79 SKFVDVYNPERH--TWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGILD 154 (202)
Q Consensus 79 ~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~ 154 (202)
...++.+|.++. .|+.-.+.. ...+..+.++.+|+.. ....++.+|+++.+ |+.-........+...+-++.+
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~~-~~ssP~v~~~~v~v~~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAGE-ALSRPVVSDGLVLVHT--SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred CCEEEEEECCCCCCcccccCCCc-eecCCEEECCEEEEEC--CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 236899998765 587644321 2233456688888753 45689999998776 8875321111111122333557
Q ss_pred CeEEEEcccCCCCceeEEEeCCCCCCCccee
Q 028925 155 GKLLLFSLEEEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 155 ~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
+.+|+..+ ...+..+|++++. -.|+.
T Consensus 206 ~~v~~~~~----~g~v~a~d~~~G~-~~W~~ 231 (394)
T PRK11138 206 GGAIVGGD----NGRVSAVLMEQGQ-LIWQQ 231 (394)
T ss_pred CEEEEEcC----CCEEEEEEccCCh-hhhee
Confidence 77777442 2257778887652 25764
No 55
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.63 E-value=0.0079 Score=46.03 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=70.0
Q ss_pred EEEEcCcCCCCC-ceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEe
Q 028925 17 IYAVGGYGMDGE-SLSSAEVYDPDTDKWNLIESLRRPRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQ 94 (202)
Q Consensus 17 iyv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~ 94 (202)
|||-|-....+. .+..+-.||+.+.+|.....--.... ..+... ++++|+.|-..-.. .....+..||..+.+|+.
T Consensus 1 v~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G~V-~~l~~~~~~~Llv~G~ft~~~-~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 1 VYVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISGTV-TDLQWASNNQLLVGGNFTLNG-TNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CEEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceEEE-EEEEEecCCEEEEEEeeEECC-CCceeEEEEecCCCeeee
Confidence 455555543333 46678889999999998865311111 111223 66777766433222 134568899999999998
Q ss_pred ccCc-----cceeeeeEE---ECCEEEEEeCCCCCeEEEEeCCCCcEEEecc
Q 028925 95 MKNG-----CVMVTAHAV---VGKKLFCMEWKNQRKLTIFDPEDNSWKMVPV 138 (202)
Q Consensus 95 ~~~~-----~~~~~~~~~---~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~ 138 (202)
++.. +....+..+ -...+++.|.......+++..+..+|..+..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 8741 111222222 2346888775333444444446778999874
No 56
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.56 E-value=0.0042 Score=47.54 Aligned_cols=106 Identities=13% Similarity=0.198 Sum_probs=64.7
Q ss_pred CcceEEEEeCCCCeEEeccCccc-eeeeeEEE-CCEEEEEeC-----CCCCeEEEEeCCCCcEEEeccCC-CCCCCCCee
Q 028925 78 NSKFVDVYNPERHTWCQMKNGCV-MVTAHAVV-GKKLFCMEW-----KNQRKLTIFDPEDNSWKMVPVPL-TGSSSIGFR 149 (202)
Q Consensus 78 ~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~~-~~~iyv~Gg-----~~~~~~~~yd~~~~~W~~~~~~~-~~~~~~~~~ 149 (202)
....+-.||+.+.+|......-. ....+... +++||+.|- .....+..||.++.+|..+.... ......-.+
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 35678899999999999874321 22333334 677887762 24567889999999999987311 110111122
Q ss_pred EEE---ECCeEEEEcccCCCCceeEEEeCCCCCCCcceeecc
Q 028925 150 FGI---LDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSKI 188 (202)
Q Consensus 150 ~~~---~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~ 188 (202)
+.. ..+++++.|........+..| +.. +|+.+..
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~--dGs---~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKY--DGS---SWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEE--cCC---ceEeccc
Confidence 222 235677777653333356666 344 6999855
No 57
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.45 E-value=0.027 Score=42.19 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=85.8
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCC-----CCCceeeeeEEECCEEEEEcCccCCCC-CCcceEEEEeC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESL-----RRPRWGCFACSFDGKLYVMGGRSSFTI-GNSKFVDVYNP 87 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iy~~gG~~~~~~-~~~~~~~~yd~ 87 (202)
++++|+.... ...++|+.+++++.+... +..+.+-.++.-+|.||+-.-...... .....++++++
T Consensus 51 ~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 51 DGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP 122 (246)
T ss_dssp TSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET
T ss_pred CCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC
Confidence 6788887542 246669999999877554 223333344445888998532211111 01157999999
Q ss_pred CCCeEEeccCccceeeee-EEECC-EEEEEeCCCCCeEEEEeCCCCc--EEEec--cCCCCCCCCCeeEEEE-CCeEEEE
Q 028925 88 ERHTWCQMKNGCVMVTAH-AVVGK-KLFCMEWKNQRKLTIFDPEDNS--WKMVP--VPLTGSSSIGFRFGIL-DGKLLLF 160 (202)
Q Consensus 88 ~~~~W~~~~~~~~~~~~~-~~~~~-~iyv~Gg~~~~~~~~yd~~~~~--W~~~~--~~~~~~~~~~~~~~~~-~~~i~v~ 160 (202)
. .+.+.+...-...-+. ...++ .+|+... ..+.++.|+.+... +.... ..........-++++. +|+||+.
T Consensus 123 ~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 123 D-GKVTVVADGLGFPNGIAFSPDGKTLYVADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA 200 (246)
T ss_dssp T-SEEEEEEEEESSEEEEEEETTSSEEEEEET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred C-CeEEEEecCcccccceEECCcchheeeccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence 8 6666655222222233 33344 5787753 56789999886443 33322 1111111123344443 6899986
Q ss_pred cccCCCCceeEEEeCCCCCCCcceeec
Q 028925 161 SLEEEPSYSTLLYDPNAASGSEWQTSK 187 (202)
Q Consensus 161 gG~~~~~~~~~~yd~~~~~~~~W~~~~ 187 (202)
.- ....|.+||++.. .-..+.
T Consensus 201 ~~---~~~~I~~~~p~G~---~~~~i~ 221 (246)
T PF08450_consen 201 DW---GGGRIVVFDPDGK---LLREIE 221 (246)
T ss_dssp EE---TTTEEEEEETTSC---EEEEEE
T ss_pred Ec---CCCEEEEECCCcc---EEEEEc
Confidence 32 2347999999954 444443
No 58
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.33 E-value=0.04 Score=44.40 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=78.0
Q ss_pred EEEECCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeC
Q 028925 10 CAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 10 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~ 87 (202)
-++.++.||+.+.. ..++.+|+.+.+ |+.-- ... ...+..+++||+... ...++++|+
T Consensus 252 P~v~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~--~~~---~~~~~~~~~vy~~~~--------~g~l~ald~ 311 (394)
T PRK11138 252 PVVVGGVVYALAYN-------GNLVALDLRSGQIVWKREY--GSV---NDFAVDGGRIYLVDQ--------NDRVYALDT 311 (394)
T ss_pred cEEECCEEEEEEcC-------CeEEEEECCCCCEEEeecC--CCc---cCcEEECCEEEEEcC--------CCeEEEEEC
Confidence 34568899987531 358889998775 76531 111 123567899998753 246888998
Q ss_pred CCC--eEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEEECCeEEEEc
Q 028925 88 ERH--TWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGILDGKLLLFS 161 (202)
Q Consensus 88 ~~~--~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~g 161 (202)
.+. .|+.-........+.++.++.||+.. ....++.+|.++.+ |+.-- . .. .....-+..+++|||..
T Consensus 312 ~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~--~~G~l~~ld~~tG~~~~~~~~-~-~~--~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 312 RGGVELWSQSDLLHRLLTAPVLYNGYLVVGD--SEGYLHWINREDGRFVAQQKV-D-SS--GFLSEPVVADDKLLIQA 383 (394)
T ss_pred CCCcEEEcccccCCCcccCCEEECCEEEEEe--CCCEEEEEECCCCCEEEEEEc-C-CC--cceeCCEEECCEEEEEe
Confidence 765 47653222222344466799999864 46789999998876 54421 1 11 22233446788988864
No 59
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.26 E-value=0.068 Score=42.72 Aligned_cols=151 Identities=19% Similarity=0.225 Sum_probs=85.3
Q ss_pred EEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEe
Q 028925 9 ACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYN 86 (202)
Q Consensus 9 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd 86 (202)
+.++.+++||+.+.. ..++.||+.+.+ |+.--.- ......+..++++|+.+. ...++.+|
T Consensus 60 ~p~v~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~~~~---~~~~~p~v~~~~v~v~~~--------~g~l~ald 121 (377)
T TIGR03300 60 QPAVAGGKVYAADAD-------GTVVALDAETGKRLWRVDLDE---RLSGGVGADGGLVFVGTE--------KGEVIALD 121 (377)
T ss_pred ceEEECCEEEEECCC-------CeEEEEEccCCcEeeeecCCC---CcccceEEcCCEEEEEcC--------CCEEEEEE
Confidence 445668888887532 358999987665 7643221 111233445777776432 23689999
Q ss_pred CCCC--eEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEEECCeEEEEcc
Q 028925 87 PERH--TWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGILDGKLLLFSL 162 (202)
Q Consensus 87 ~~~~--~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG 162 (202)
+.+. .|+...+.. ......+.++.+|+.. ....++.+|+++.+ |+.-........+.....+..++.+|+ +.
T Consensus 122 ~~tG~~~W~~~~~~~-~~~~p~v~~~~v~v~~--~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~ 197 (377)
T TIGR03300 122 AEDGKELWRAKLSSE-VLSPPLVANGLVVVRT--NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GF 197 (377)
T ss_pred CCCCcEeeeeccCce-eecCCEEECCEEEEEC--CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-EC
Confidence 8665 487654321 1223345677887753 45779999987664 876532111111222333455666554 32
Q ss_pred cCCCCceeEEEeCCCCCCCccee
Q 028925 163 EEEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 163 ~~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
. ...+..+|++++. -.|+.
T Consensus 198 ~---~g~v~ald~~tG~-~~W~~ 216 (377)
T TIGR03300 198 A---GGKLVALDLQTGQ-PLWEQ 216 (377)
T ss_pred C---CCEEEEEEccCCC-Eeeee
Confidence 1 2368888987651 25764
No 60
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.23 E-value=0.019 Score=43.43 Aligned_cols=97 Identities=9% Similarity=-0.049 Sum_probs=59.9
Q ss_pred CccceeeeeEEE----CCEEEEEeCCC------------------CCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEEC
Q 028925 97 NGCVMVTAHAVV----GKKLFCMEWKN------------------QRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILD 154 (202)
Q Consensus 97 ~~~~~~~~~~~~----~~~iyv~Gg~~------------------~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 154 (202)
|..|+.+.+.++ +....+|||.+ ...|+..|++-...+....|.......++.....+
T Consensus 85 P~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~ 164 (337)
T PF03089_consen 85 PEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARN 164 (337)
T ss_pred CcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecC
Confidence 566777776554 23467778732 23578889988888877656555556666666779
Q ss_pred CeEEEEcccCCCCc----eeEEEe--CCCCCCCcceeecccCCceee
Q 028925 155 GKLLLFSLEEEPSY----STLLYD--PNAASGSEWQTSKIKPSGLCL 195 (202)
Q Consensus 155 ~~i~v~gG~~~~~~----~~~~yd--~~~~~~~~W~~~~~~p~~~~~ 195 (202)
+.||++||+.-..+ .++... +-.++ -.-....++.+++.
T Consensus 165 D~VYilGGHsl~sd~Rpp~l~rlkVdLllGS--P~vsC~vl~~glSi 209 (337)
T PF03089_consen 165 DCVYILGGHSLESDSRPPRLYRLKVDLLLGS--PAVSCTVLQGGLSI 209 (337)
T ss_pred ceEEEEccEEccCCCCCCcEEEEEEeecCCC--ceeEEEECCCCceE
Confidence 99999999753322 333332 22221 34455566666663
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.10 E-value=0.084 Score=42.17 Aligned_cols=125 Identities=22% Similarity=0.222 Sum_probs=74.5
Q ss_pred EEECCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCC
Q 028925 11 AEVNGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPE 88 (202)
Q Consensus 11 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~ 88 (202)
+..++.||+.... ..++.||+++.+ |+.-. . .....+..+++||+... ...++++|..
T Consensus 238 ~~~~~~vy~~~~~-------g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~~--------~G~l~~~d~~ 297 (377)
T TIGR03300 238 VVDGGQVYAVSYQ-------GRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTDA--------DGVVVALDRR 297 (377)
T ss_pred EEECCEEEEEEcC-------CEEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEECC--------CCeEEEEECC
Confidence 3457788886431 358889988765 75531 1 12233456889998742 2468889887
Q ss_pred CC--eEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEEECCeEEEEc
Q 028925 89 RH--TWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGILDGKLLLFS 161 (202)
Q Consensus 89 ~~--~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~g 161 (202)
+. .|+.-........+....++.||+.. ....++++|.++.+ |+.-. . . ......-+..+++||+.+
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~--~~G~l~~~d~~tG~~~~~~~~-~--~-~~~~~sp~~~~~~l~v~~ 368 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAVVGGYLVVGD--FEGYLHWLSREDGSFVARLKT-D--G-SGIASPPVVVGDGLLVQT 368 (377)
T ss_pred CCcEEEccccccCCccccCEEECCEEEEEe--CCCEEEEEECCCCCEEEEEEc-C--C-CccccCCEEECCEEEEEe
Confidence 65 47653211122233355688888764 56789999987665 43321 1 1 112334457788888765
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.07 E-value=0.07 Score=39.42 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=78.4
Q ss_pred eeEEEeCCCCC--eEEcCCCCCCceeee--eEEECCEEEEEcCccCCCCCCcceEEEEeCCCCe--EEeccCccceeeee
Q 028925 32 SAEVYDPDTDK--WNLIESLRRPRWGCF--ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHT--WCQMKNGCVMVTAH 105 (202)
Q Consensus 32 ~~~~yd~~t~~--W~~~~~~~~~r~~~~--~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~ 105 (202)
.+..+|+.+.+ |+.-- ........ .+..++.+|+..+ ...+.++|+.+.+ |+.-.+.+.. ...
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~~~~~~-~~~ 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDLPGPIS-GAP 72 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET--------TSEEEEEETTTSEEEEEEECSSCGG-SGE
T ss_pred EEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeecccccc-cee
Confidence 35566665554 55421 11122222 3447888888742 3469999987764 6665432221 113
Q ss_pred EEECCEEEEEeCCCCCeEEEEeCCCCc--EEE-eccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCc
Q 028925 106 AVVGKKLFCMEWKNQRKLTIFDPEDNS--WKM-VPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSE 182 (202)
Q Consensus 106 ~~~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~-~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~ 182 (202)
...++.||+... .+.+..+|.++.+ |+. ..................++.+|+... ...+..+|++++. -.
T Consensus 73 ~~~~~~v~v~~~--~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~-~~ 145 (238)
T PF13360_consen 73 VVDGGRVYVGTS--DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGK-LL 145 (238)
T ss_dssp EEETTEEEEEET--TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTE-EE
T ss_pred eecccccccccc--eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCc-EE
Confidence 677899998863 4489999977665 984 432212212334445555777777552 3368889988752 25
Q ss_pred ceee
Q 028925 183 WQTS 186 (202)
Q Consensus 183 W~~~ 186 (202)
|+.-
T Consensus 146 w~~~ 149 (238)
T PF13360_consen 146 WKYP 149 (238)
T ss_dssp EEEE
T ss_pred EEee
Confidence 7764
No 63
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.07 E-value=0.072 Score=40.26 Aligned_cols=148 Identities=20% Similarity=0.150 Sum_probs=89.2
Q ss_pred ECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeE
Q 028925 13 VNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW 92 (202)
Q Consensus 13 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W 92 (202)
.++.+|.--|... .+.+.++|+.|++-....+++..-+.=.++.++++||.+.=. .....+||+.+-+
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-------~~~~f~yd~~tl~- 121 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-------EGTGFVYDPNTLK- 121 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-------SSEEEEEETTTTE-
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-------CCeEEEEccccce-
Confidence 5789999888642 367899999999987777788888888899999999998532 3468999997653
Q ss_pred Eecc--CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEE-eccCCCCCCCCC-eeEEEECCeEEEEcccCCCCc
Q 028925 93 CQMK--NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKM-VPVPLTGSSSIG-FRFGILDGKLLLFSLEEEPSY 168 (202)
Q Consensus 93 ~~~~--~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~-~~~~~~~~~i~v~gG~~~~~~ 168 (202)
.+. +-+....+.+..+..+++-.| +..++..||++-+=.. +........... =-+-.++|.||.== =..+
T Consensus 122 -~~~~~~y~~EGWGLt~dg~~Li~SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANV---W~td 195 (264)
T PF05096_consen 122 -KIGTFPYPGEGWGLTSDGKRLIMSDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANV---WQTD 195 (264)
T ss_dssp -EEEEEE-SSS--EEEECSSCEEEE-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEE---TTSS
T ss_pred -EEEEEecCCcceEEEcCCCEEEEECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEe---CCCC
Confidence 333 223344556666777887765 7789999987543222 221111100000 11334577777511 1234
Q ss_pred eeEEEeCCCC
Q 028925 169 STLLYDPNAA 178 (202)
Q Consensus 169 ~~~~yd~~~~ 178 (202)
.+.+.||+++
T Consensus 196 ~I~~Idp~tG 205 (264)
T PF05096_consen 196 RIVRIDPETG 205 (264)
T ss_dssp EEEEEETTT-
T ss_pred eEEEEeCCCC
Confidence 7888899887
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.76 E-value=0.14 Score=37.87 Aligned_cols=150 Identities=22% Similarity=0.337 Sum_probs=87.7
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCC
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
..++++|+..+. ..++.+|+.+.+ |+.-. +.+.... ....++.+|+... ...++.+|..+
T Consensus 34 ~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~~~~v~v~~~--------~~~l~~~d~~t 95 (238)
T PF13360_consen 34 PDGGRVYVASGD-------GNLYALDAKTGKVLWRFDL--PGPISGA-PVVDGGRVYVGTS--------DGSLYALDAKT 95 (238)
T ss_dssp EETTEEEEEETT-------SEEEEEETTTSEEEEEEEC--SSCGGSG-EEEETTEEEEEET--------TSEEEEEETTT
T ss_pred EeCCEEEEEcCC-------CEEEEEECCCCCEEEEeec--cccccce-eeecccccccccc--------eeeeEecccCC
Confidence 468899998432 468999998776 55443 2222222 4677899988762 12689999666
Q ss_pred C--eEEe-ccC---cc-ceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCC------CCCeeEEEEC
Q 028925 90 H--TWCQ-MKN---GC-VMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSS------SIGFRFGILD 154 (202)
Q Consensus 90 ~--~W~~-~~~---~~-~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~------~~~~~~~~~~ 154 (202)
. .|+. ... .. .......+.++.+|+.. ....+..+|+++.+ |+.-........ ......+..+
T Consensus 96 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 96 GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT--SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE--TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred cceeeeeccccccccccccccCceEecCEEEEEe--ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence 5 5883 332 11 11223344477777764 47899999998776 777541111100 0113334456
Q ss_pred CeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 155 GKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 155 ~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
+.||+..+... +..+|.+++.. .|+..
T Consensus 174 ~~v~~~~~~g~----~~~~d~~tg~~-~w~~~ 200 (238)
T PF13360_consen 174 GRVYVSSGDGR----VVAVDLATGEK-LWSKP 200 (238)
T ss_dssp TEEEEECCTSS----EEEEETTTTEE-EEEEC
T ss_pred CEEEEEcCCCe----EEEEECCCCCE-EEEec
Confidence 78888775432 55568888711 28543
No 65
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.68 E-value=0.12 Score=40.48 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=83.9
Q ss_pred CEEEEEcCc-CCC--CCce-eeeEEEeCCCC-----CeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEE
Q 028925 15 GKIYAVGGY-GMD--GESL-SSAEVYDPDTD-----KWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVY 85 (202)
Q Consensus 15 ~~iyv~GG~-~~~--~~~~-~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~y 85 (202)
...+++|-. ... ..+. ..+.+|+.... +.+.+......-.-.+.+.++++|.+.-| ..+.+|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g---------~~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG---------NKLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET---------TEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec---------CEEEEE
Confidence 466666643 211 1123 67899998874 45544332222223445567999666544 357888
Q ss_pred eCCCCe-EEecc--CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEE-CCeEEEEc
Q 028925 86 NPERHT-WCQMK--NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGIL-DGKLLLFS 161 (202)
Q Consensus 86 d~~~~~-W~~~~--~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~g 161 (202)
+....+ +.... ..+....+..+.++.|++..-...-.+..|+.+.++-..++....+ +...++..+ ++. .+++
T Consensus 113 ~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~--~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 113 DLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP--RWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp EEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS---BEEEEEEEE-SSS-EEEE
T ss_pred EccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC--ccEEEEEEecCCc-EEEE
Confidence 877777 77766 3333455567778877765422223445668877777877733333 445555566 665 5555
Q ss_pred ccCCCCceeEEEeCC
Q 028925 162 LEEEPSYSTLLYDPN 176 (202)
Q Consensus 162 G~~~~~~~~~~yd~~ 176 (202)
+.....-.++.|++.
T Consensus 190 ~D~~gnl~~l~~~~~ 204 (321)
T PF03178_consen 190 GDKDGNLFVLRYNPE 204 (321)
T ss_dssp EETTSEEEEEEE-SS
T ss_pred EcCCCeEEEEEECCC
Confidence 554444466777764
No 66
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.11 Score=41.81 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=75.6
Q ss_pred eeeEEEeCCCCCeEEcCCCC---CCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc--Cccceeeee
Q 028925 31 SSAEVYDPDTDKWNLIESLR---RPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK--NGCVMVTAH 105 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~---~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~ 105 (202)
+-+|.||+.+.+-+++.++. ..-...-.++.+++++++-|.. .-+.+....|+.|-.-- +........
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-------G~I~lLhakT~eli~s~KieG~v~~~~f 352 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-------GHIHLLHAKTKELITSFKIEGVVSDFTF 352 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-------ceEEeehhhhhhhhheeeeccEEeeEEE
Confidence 45899999999988887652 1112222345677777777754 24677777777664322 111111111
Q ss_pred EEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEE-EECCeEEEEcccCCCCceeEEEeCCC
Q 028925 106 AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFG-ILDGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 106 ~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
......|++.|| .+.|+.+|...+.-...-.. ....++..++ ..++..+..|.. ..-|-+||.++
T Consensus 353 sSdsk~l~~~~~--~GeV~v~nl~~~~~~~rf~D--~G~v~gts~~~S~ng~ylA~GS~---~GiVNIYd~~s 418 (514)
T KOG2055|consen 353 SSDSKELLASGG--TGEVYVWNLRQNSCLHRFVD--DGSVHGTSLCISLNGSYLATGSD---SGIVNIYDGNS 418 (514)
T ss_pred ecCCcEEEEEcC--CceEEEEecCCcceEEEEee--cCccceeeeeecCCCceEEeccC---cceEEEeccch
Confidence 222446777764 56999999998854444211 1123444555 457776666632 33567777543
No 67
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.46 E-value=0.36 Score=39.04 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=78.0
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCcccee-eeeEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMV-TAHAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~ 108 (202)
..++++|+.+++-..+.......... ...-+++ |++..... ....++.+|..+.+.+.+....... ......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~-----~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~ 287 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKD-----GNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSP 287 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCC-----CCccEEEEECCCCCEEECCCCCCCCCCEEECC
Confidence 46889999887766655433222221 1223554 55443221 2346899999888777775322111 111223
Q ss_pred CC-EEEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 109 GK-KLFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 109 ~~-~iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
++ .|++... .....++.+|..+..++.+... ....... ....+++.+++.........++.+|+.++ .++.+
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~--~~~~~~~-~~spdg~~i~~~~~~~~~~~i~~~d~~~~---~~~~l 361 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFR--GGYNASP-SWSPDGDLIAFVHREGGGFNIAVMDLDGG---GERVL 361 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCccCe-EECCCCCEEEEEEccCCceEEEEEeCCCC---CeEEc
Confidence 44 4544432 1234788999988888877521 1111111 22335555555544344457999999886 56555
No 68
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.46 E-value=0.2 Score=37.89 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=69.2
Q ss_pred ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc--CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEecc
Q 028925 61 FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK--NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPV 138 (202)
Q Consensus 61 ~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~ 138 (202)
.+|.+|--.|.-+ .+.+..||+.+++-.... |.....-+.+..+++||.+-. ..+..++||+++ .+.+..
T Consensus 54 ~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW-k~~~~f~yd~~t--l~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW-KEGTGFVYDPNT--LKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-SSSEEEEEETTT--TEEEEE
T ss_pred CCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-cCCeEEEEcccc--ceEEEE
Confidence 5788998777543 357999999998755444 444556778889999999975 578889999974 555542
Q ss_pred CCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCC
Q 028925 139 PLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
-..+ ..+.+++..++.+++-.|. ..++.+||++
T Consensus 126 ~~y~--~EGWGLt~dg~~Li~SDGS----~~L~~~dP~~ 158 (264)
T PF05096_consen 126 FPYP--GEGWGLTSDGKRLIMSDGS----SRLYFLDPET 158 (264)
T ss_dssp EE-S--SS--EEEECSSCEEEE-SS----SEEEEE-TTT
T ss_pred EecC--CcceEEEcCCCEEEEECCc----cceEEECCcc
Confidence 2222 5777888777888887653 3677778765
No 69
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=0.1 Score=42.02 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=88.2
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeee--EEECCE-EEEEcCccCCCCCCcceEEEEeCCCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFA--CSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERH 90 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~--~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~ 90 (202)
...|.+.+|++. .-+++..|-++|. .+..+...++--.. ..-+|. ..+.+|+. +-++.||.++.
T Consensus 224 ~~plllvaG~d~----~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr-------ky~ysyDle~a 290 (514)
T KOG2055|consen 224 TAPLLLVAGLDG----TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR-------KYLYSYDLETA 290 (514)
T ss_pred CCceEEEecCCC----cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc-------eEEEEeecccc
Confidence 457888888752 2356777777776 33333222211111 122555 66666643 46899999999
Q ss_pred eEEeccCcc-----ceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCC
Q 028925 91 TWCQMKNGC-----VMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEE 165 (202)
Q Consensus 91 ~W~~~~~~~-----~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~ 165 (202)
+-+++.++. ....--+..++.++++-| ..+.+++...+++.|..-- ..........+...+.+|++.||..
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~--KieG~v~~~~fsSdsk~l~~~~~~G- 366 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSF--KIEGVVSDFTFSSDSKELLASGGTG- 366 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhhee--eeccEEeeEEEecCCcEEEEEcCCc-
Confidence 988887321 111122334555555544 6788888888888886642 1111222334444566777777653
Q ss_pred CCceeEEEeCCCCCC-Ccceee
Q 028925 166 PSYSTLLYDPNAASG-SEWQTS 186 (202)
Q Consensus 166 ~~~~~~~yd~~~~~~-~~W~~~ 186 (202)
.||+||..+++- .+|..-
T Consensus 367 ---eV~v~nl~~~~~~~rf~D~ 385 (514)
T KOG2055|consen 367 ---EVYVWNLRQNSCLHRFVDD 385 (514)
T ss_pred ---eEEEEecCCcceEEEEeec
Confidence 699999988621 245543
No 70
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.30 E-value=0.3 Score=36.50 Aligned_cols=138 Identities=18% Similarity=0.164 Sum_probs=80.5
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEE--ECCEEEEEcCccCCCCCCcceEEEEeCCCCe
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS--FDGKLYVMGGRSSFTIGNSKFVDVYNPERHT 91 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~ 91 (202)
++.||+..-. ...++++|+.+++-+.... +. ...++. -++++|+... ..+.++|+.+.+
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~---------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADS---------GGIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEET---------TCEEEEETTTTE
T ss_pred CCEEEEEEcC------CCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEc---------CceEEEecCCCc
Confidence 6788888422 2579999999887655432 22 223333 3688888743 235667999999
Q ss_pred EEeccCc-----cce--eeeeEEECCEEEEEeCC-----CC--CeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEE-CC-
Q 028925 92 WCQMKNG-----CVM--VTAHAVVGKKLFCMEWK-----NQ--RKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGIL-DG- 155 (202)
Q Consensus 92 W~~~~~~-----~~~--~~~~~~~~~~iyv~Gg~-----~~--~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~- 155 (202)
++.+... +.. ...++..+|.||+..-. .. ..++++++. .+.+.+.... ...-+++.. ++
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~----~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL----GFPNGIAFSPDGK 146 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE----SSEEEEEEETTSS
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc----ccccceEECCcch
Confidence 8887622 111 22334447889987421 11 568999998 6666664221 111233333 44
Q ss_pred eEEEEcccCCCCceeEEEeCCCC
Q 028925 156 KLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 156 ~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
.+|+.. .....++.|++...
T Consensus 147 ~lyv~d---s~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 147 TLYVAD---SFNGRIWRFDLDAD 166 (246)
T ss_dssp EEEEEE---TTTTEEEEEEEETT
T ss_pred heeecc---cccceeEEEecccc
Confidence 577754 33447999998653
No 71
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.24 E-value=0.54 Score=38.73 Aligned_cols=144 Identities=11% Similarity=0.042 Sum_probs=77.9
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeee-eEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTA-HAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~ 108 (202)
.++|++|+.+++-+.+...+...... ...-+|+ |++..... ....++++|..+++.+++......... ....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~-~wSPDG~~La~~~~~~-----g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSp 315 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAP-RFSPDGKKLALVLSKD-----GQPEIYVVDIATKALTRITRHRAIDTEPSWHP 315 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCe-eECCCCCEEEEEEeCC-----CCeEEEEEECCCCCeEECccCCCCccceEECC
Confidence 46899999888776665443221111 1223554 55443222 234799999999988887632211111 1223
Q ss_pred CC-EEEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 109 GK-KLFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 109 ~~-~iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
++ .|++... .....++.+|.++.+++.+... ............++.|++.. .......++.+|++++ ..+.+
T Consensus 316 DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~-~~~g~~~I~~~dl~~g---~~~~l 389 (448)
T PRK04792 316 DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRSMIMVN-RTNGKFNIARQDLETG---AMQVL 389 (448)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCEEEEEE-ecCCceEEEEEECCCC---CeEEc
Confidence 44 4544431 1235788899999998887421 11111222222334444443 3333457888998887 65554
No 72
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.18 E-value=0.61 Score=38.87 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=64.8
Q ss_pred eEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCCC----CCc-eeeeeEEEC-CEEEEEcCccCCCCCCc
Q 028925 8 FACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESLR----RPR-WGCFACSFD-GKLYVMGGRSSFTIGNS 79 (202)
Q Consensus 8 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~----~~r-~~~~~~~~~-~~iy~~gG~~~~~~~~~ 79 (202)
.+-++.+++||+.... ..++.+|+.+.+ |+.-...+ .+. .....+..+ +++|+... .
T Consensus 55 ~sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------~ 119 (488)
T cd00216 55 GTPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------D 119 (488)
T ss_pred cCCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--------C
Confidence 3445678999987532 357888887665 86543221 010 111223446 78887532 2
Q ss_pred ceEEEEeCCCC--eEEeccCccc-----eeeeeEEECCEEEEEeC-------CCCCeEEEEeCCCCc--EEEe
Q 028925 80 KFVDVYNPERH--TWCQMKNGCV-----MVTAHAVVGKKLFCMEW-------KNQRKLTIFDPEDNS--WKMV 136 (202)
Q Consensus 80 ~~~~~yd~~~~--~W~~~~~~~~-----~~~~~~~~~~~iyv~Gg-------~~~~~~~~yd~~~~~--W~~~ 136 (202)
..+..+|..+. .|+.-..... ...+..+.++.+|+... .....++.+|.++.+ |+.-
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 36888888755 4776542211 12334556767665321 124678999997765 8764
No 73
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=95.98 E-value=0.15 Score=34.16 Aligned_cols=78 Identities=18% Similarity=0.382 Sum_probs=55.9
Q ss_pred EEECCEEEEEeC---CCCCeEEEEeCCCCcEEEeccC-CCCCCCCCeeEEEECCeEEEEcccCCCC---ceeEEEe-CCC
Q 028925 106 AVVGKKLFCMEW---KNQRKLTIFDPEDNSWKMVPVP-LTGSSSIGFRFGILDGKLLLFSLEEEPS---YSTLLYD-PNA 177 (202)
Q Consensus 106 ~~~~~~iyv~Gg---~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~i~v~gG~~~~~---~~~~~yd-~~~ 177 (202)
..++|.+|-... .....+..||..+.+|+.+..| ..........++.++|+|-++.-..... ..+|+.+ .++
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 356788777653 2357899999999999999754 3344566777889999999987554332 4677774 455
Q ss_pred CCCCcceee
Q 028925 178 ASGSEWQTS 186 (202)
Q Consensus 178 ~~~~~W~~~ 186 (202)
+ +|.+.
T Consensus 82 ~---~Wsk~ 87 (129)
T PF08268_consen 82 Q---EWSKK 87 (129)
T ss_pred c---eEEEE
Confidence 6 89886
No 74
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.97 E-value=0.71 Score=37.78 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=76.8
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeee-eEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTA-HAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~ 108 (202)
.+++++|+.+++-+.+...+.... .....-+|+ |++..... ....++++|..+++-+.+......... ....
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp 301 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRD-----GNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP 301 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCC-----CCceEEEEECCCCCeEECccCCCCccceEECC
Confidence 468899998888777655432211 112223554 54432221 124799999998887776532211111 2233
Q ss_pred CCE-EEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 109 GKK-LFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 109 ~~~-iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
+++ |+.... .....++.+|..+...+.+.. ........+....++.|++..+. .....++++|+.++ ..+.+
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g---~~~~L 375 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTG---SVRTL 375 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCC---CeEEC
Confidence 454 444321 113468888988888877742 11111122222234555555432 22347899998877 66655
No 75
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.94 E-value=0.4 Score=34.65 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=74.5
Q ss_pred EEECCEEEEEcCcCCCCCceeeeEEEeCCCCCe--EEcC----CCCCCceeeeeEEE-CCEEEEEcCccCCCCCCcceEE
Q 028925 11 AEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKW--NLIE----SLRRPRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVD 83 (202)
Q Consensus 11 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W--~~~~----~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~ 83 (202)
...++++|++-|. .+|+++...... +.+. .+|. ...++.... ++++|++-|. ..+
T Consensus 13 ~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg~---------~yw 74 (194)
T cd00094 13 TTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKGD---------KYW 74 (194)
T ss_pred EEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECCC---------EEE
Confidence 3456999999763 478887652221 2221 1222 222232222 3899999663 467
Q ss_pred EEeCCCCeEE--------eccCccceeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEEE-----ecc--CCCCCCCC
Q 028925 84 VYNPERHTWC--------QMKNGCVMVTAHAVV--GKKLFCMEWKNQRKLTIFDPEDNSWKM-----VPV--PLTGSSSI 146 (202)
Q Consensus 84 ~yd~~~~~W~--------~~~~~~~~~~~~~~~--~~~iyv~Gg~~~~~~~~yd~~~~~W~~-----~~~--~~~~~~~~ 146 (202)
+|+..+.... ..++.+....++... ++++|++- .+..+.||...++... +.. +..+ ...
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFk---g~~y~ry~~~~~~v~~~yP~~i~~~w~g~p-~~i 150 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFK---GDKYWRYDEKTQKMDPGYPKLIETDFPGVP-DKV 150 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEe---CCEEEEEeCCCccccCCCCcchhhcCCCcC-CCc
Confidence 7765431111 001111112233333 68999994 4677888876665421 110 1111 122
Q ss_pred CeeEEEECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 147 GFRFGILDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 147 ~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
.+++...++++|++-|. ..++||..+.
T Consensus 151 daa~~~~~~~~yfF~g~-----~y~~~d~~~~ 177 (194)
T cd00094 151 DAAFRWLDGYYYFFKGD-----QYWRFDPRSK 177 (194)
T ss_pred ceeEEeCCCcEEEEECC-----EEEEEeCccc
Confidence 23333445899999754 6899998876
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.85 E-value=0.55 Score=35.54 Aligned_cols=102 Identities=22% Similarity=0.192 Sum_probs=53.7
Q ss_pred CEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC-CCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeE
Q 028925 15 GKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR-RPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTW 92 (202)
Q Consensus 15 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W 92 (202)
+++|+.++.+ ..+.+||+.+++-...-... .++ ..+..-+++ +|+.++. ...+.+||..+.+.
T Consensus 1 ~~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~~~--~l~~~~dg~~l~~~~~~-------~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 1 EKAYVSNEKD------NTISVIDTATLEVTRTFPVGQRPR--GITLSKDGKLLYVCASD-------SDTIQVIDLATGEV 65 (300)
T ss_pred CcEEEEecCC------CEEEEEECCCCceEEEEECCCCCC--ceEECCCCCEEEEEECC-------CCeEEEEECCCCcE
Confidence 3577776643 36888898877643322211 121 111223444 6666542 24688999888765
Q ss_pred Ee-ccCccceeeeeEEECC-EEEEEeCCCCCeEEEEeCCCCc
Q 028925 93 CQ-MKNGCVMVTAHAVVGK-KLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 93 ~~-~~~~~~~~~~~~~~~~-~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
.. ++............++ .+|+.++ ..+.+..||+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~g~~l~~~~~-~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 66 IGTLPSGPDPELFALHPNGKILYIANE-DDNLVTVIDIETRK 106 (300)
T ss_pred EEeccCCCCccEEEECCCCCEEEEEcC-CCCeEEEEECCCCe
Confidence 44 2211111111222234 4666543 45689999998754
No 77
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.72 E-value=0.63 Score=35.23 Aligned_cols=144 Identities=18% Similarity=0.083 Sum_probs=68.5
Q ss_pred CEEEEEcCcCCCCCceeeeEEEeCCCCCeEEc-CCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeE
Q 028925 15 GKIYAVGGYGMDGESLSSAEVYDPDTDKWNLI-ESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTW 92 (202)
Q Consensus 15 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W 92 (202)
..+|+.++.+ ..+.+||+.+.+.... +....++ ..+..-+++ +|+.++. ...+.+||..+.+-
T Consensus 43 ~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~~~~~-------~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 43 KLLYVCASDS------DTIQVIDLATGEVIGTLPSGPDPE--LFALHPNGKILYIANED-------DNLVTVIDIETRKV 107 (300)
T ss_pred CEEEEEECCC------CeEEEEECCCCcEEEeccCCCCcc--EEEECCCCCEEEEEcCC-------CCeEEEEECCCCeE
Confidence 3567776432 3588899988776442 2111111 111222444 5555432 24688999887642
Q ss_pred EeccCccceeee-eEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeE
Q 028925 93 CQMKNGCVMVTA-HAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTL 171 (202)
Q Consensus 93 ~~~~~~~~~~~~-~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~ 171 (202)
...-+....... ....++.+++++......+..||..+.+-.... +... .........+++.+++++.. ...+.
T Consensus 108 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~-~~~~--~~~~~~~s~dg~~l~~~~~~--~~~v~ 182 (300)
T TIGR03866 108 LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV-LVDQ--RPRFAEFTADGKELWVSSEI--GGTVS 182 (300)
T ss_pred EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE-EcCC--CccEEEECCCCCEEEEEcCC--CCEEE
Confidence 211111111122 233466666666433445677888765433211 1111 11122223355544444321 23578
Q ss_pred EEeCCCC
Q 028925 172 LYDPNAA 178 (202)
Q Consensus 172 ~yd~~~~ 178 (202)
+||.++.
T Consensus 183 i~d~~~~ 189 (300)
T TIGR03866 183 VIDVATR 189 (300)
T ss_pred EEEcCcc
Confidence 8888764
No 78
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.63 E-value=1.2 Score=37.65 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=67.3
Q ss_pred EEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCCCCC--------ceeeeeEEECCEEEEEcCccCCCCCC
Q 028925 9 ACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESLRRP--------RWGCFACSFDGKLYVMGGRSSFTIGN 78 (202)
Q Consensus 9 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iy~~gG~~~~~~~~ 78 (202)
+-++.++.||+.... ..++.+|.+|.+ |+.-...+.. ......+..+++||+...
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------- 128 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------
Confidence 345668999996542 247888887765 7654322211 112234556888887432
Q ss_pred cceEEEEeCCCCe--EEeccC-cc---ceeeeeEEECCEEEEEeC----CCCCeEEEEeCCCCc--EEEec
Q 028925 79 SKFVDVYNPERHT--WCQMKN-GC---VMVTAHAVVGKKLFCMEW----KNQRKLTIFDPEDNS--WKMVP 137 (202)
Q Consensus 79 ~~~~~~yd~~~~~--W~~~~~-~~---~~~~~~~~~~~~iyv~Gg----~~~~~~~~yd~~~~~--W~~~~ 137 (202)
...+..+|.++.+ |+.-.. .. ....+..+.+++||+... .....+..||.++.+ |+.-.
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 2368899987764 765431 11 112334667888877532 124688999998876 77644
No 79
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.62 E-value=0.99 Score=36.79 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=77.2
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeee-eEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTA-HAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~ 108 (202)
.+++++|+.+++-+.+...+..-.. ....-+|+ |++..... ....++++|..+.+.+++......... ....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~sp 296 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKD-----GNPEIYVMDLASRQLSRVTNHPAIDTEPFWGK 296 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccC-----CCceEEEEECCCCCeEEcccCCCCcCCeEECC
Confidence 4689999998887776543321111 11123554 44332211 124799999999988877633221111 1223
Q ss_pred CC-EEEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 109 GK-KLFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 109 ~~-~iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
++ .|+.... .....++.+|..+..++.+... ............++.|+.... ......++.+|++++ ..+.+
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~-~~~~~~l~~~dl~tg---~~~~l 370 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHR-QDGNFHVAAQDLQRG---SVRIL 370 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEc-cCCceEEEEEECCCC---CEEEc
Confidence 44 4554432 1235788889988888877521 111111122223445554432 222346889999887 66665
No 80
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=0.78 Score=35.23 Aligned_cols=129 Identities=16% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEE
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC 93 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~ 93 (202)
+..--+.||.+ ..+.+||+.+.+=..+.....+..+-.-. ......+.||.+ +.+.++|+....-.
T Consensus 64 d~~~~~~G~~d------g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~~~vIsgsWD-------~~ik~wD~R~~~~~ 129 (323)
T KOG1036|consen 64 DESTIVTGGLD------GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEVGCVISGSWD-------KTIKFWDPRNKVVV 129 (323)
T ss_pred CCceEEEeccC------ceEEEEEecCCcceeeccCCCceEEEEee-ccCCeEEEcccC-------ccEEEEeccccccc
Confidence 43334445553 35888999988766665444333221111 223345567664 46888888752211
Q ss_pred eccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc-----------EEEeccCCCCCCCCCeeEEEECCeEEE
Q 028925 94 QMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS-----------WKMVPVPLTGSSSIGFRFGILDGKLLL 159 (202)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~-----------W~~~~~~~~~~~~~~~~~~~~~~~i~v 159 (202)
..........++.+.+++|. +|+ ....+.+||+.+.. -+....-..+ ...++++..++|+++|
T Consensus 130 ~~~d~~kkVy~~~v~g~~Lv-Vg~-~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 130 GTFDQGKKVYCMDVSGNRLV-VGT-SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred cccccCceEEEEeccCCEEE-Eee-cCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 11122223344445555555 443 67889999986543 1111111112 4667888888999887
No 81
>smart00284 OLF Olfactomedin-like domains.
Probab=95.50 E-value=0.77 Score=34.71 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=86.2
Q ss_pred CCccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCc----ee--------eeeEEECCEEEEE
Q 028925 1 MNVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR----WG--------CFACSFDGKLYVM 68 (202)
Q Consensus 1 m~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r----~~--------~~~~~~~~~iy~~ 68 (202)
||.+-.+...++.+|.+|.--. ...++.+||+.+++-.....||.+. .. .-.++-.+-|+++
T Consensus 70 Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvI 143 (255)
T smart00284 70 LPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVI 143 (255)
T ss_pred CCCccccccEEEECceEEEEec------CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEE
Confidence 3445566677788999998532 2367999999999876444444321 11 1122223335554
Q ss_pred -cCccCCCCCCcceEEEEeCCCC----eEEeccCccceeeeeEEECCEEEEEeC-C--CCCeEEEEeCCCCcEEEeccCC
Q 028925 69 -GGRSSFTIGNSKFVDVYNPERH----TWCQMKNGCVMVTAHAVVGKKLFCMEW-K--NQRKLTIFDPEDNSWKMVPVPL 140 (202)
Q Consensus 69 -gG~~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~iyv~Gg-~--~~~~~~~yd~~~~~W~~~~~~~ 140 (202)
...... ..--+-..||.+- +|..--+ .+....++++-|.||++-. . ...-.+.||+.+++=..+..+.
T Consensus 144 Yat~~~~---g~ivvSkLnp~tL~ve~tW~T~~~-k~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f 219 (255)
T smart00284 144 YATEQNA---GKIVISKLNPATLTIENTWITTYN-KRSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPF 219 (255)
T ss_pred EeccCCC---CCEEEEeeCcccceEEEEEEcCCC-cccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeee
Confidence 211111 1112335566554 4665222 2333456788899999953 1 1234678999988744443333
Q ss_pred CCCCCCCeeEEEE---CCeEEEEcccCCCCceeEEEeCC
Q 028925 141 TGSSSIGFRFGIL---DGKLLLFSLEEEPSYSTLLYDPN 176 (202)
Q Consensus 141 ~~~~~~~~~~~~~---~~~i~v~gG~~~~~~~~~~yd~~ 176 (202)
+- .....++..+ +.+||+.. ......|++.
T Consensus 220 ~n-~y~~~s~l~YNP~d~~LY~wd-----ng~~l~Y~v~ 252 (255)
T smart00284 220 EN-MYEYISMLDYNPNDRKLYAWN-----NGHLVHYDIA 252 (255)
T ss_pred cc-ccccceeceeCCCCCeEEEEe-----CCeEEEEEEE
Confidence 33 1222333333 68899875 2245666653
No 82
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.50 E-value=0.92 Score=38.23 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=67.4
Q ss_pred eeEEECCEEEEEcCccCCCCCCcceEEEEeCCCC--eEEeccCcc--c--------eeeeeEEECCEEEEEeCCCCCeEE
Q 028925 57 FACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERH--TWCQMKNGC--V--------MVTAHAVVGKKLFCMEWKNQRKLT 124 (202)
Q Consensus 57 ~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~--~--------~~~~~~~~~~~iyv~Gg~~~~~~~ 124 (202)
+-++.++.||+.+.. ..++.+|..+. .|+.-...+ . ...+..+.+++||+.. ....+.
T Consensus 64 tPvv~~g~vyv~s~~--------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t--~dg~l~ 133 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY--------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT--LDARLV 133 (527)
T ss_pred CCEEECCEEEEECCC--------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc--CCCEEE
Confidence 445679999986432 24788887764 477543111 0 0122356678888753 457899
Q ss_pred EEeCCCCc--EEEeccCCCCCCCCCeeEEEECCeEEEEcc--cCCCCceeEEEeCCCCCCCccee
Q 028925 125 IFDPEDNS--WKMVPVPLTGSSSIGFRFGILDGKLLLFSL--EEEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 125 ~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG--~~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
.+|.++.+ |+.-.............-++.+++||+-.. +......+..||.+++.. .|+.
T Consensus 134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~-lW~~ 197 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL-VWRR 197 (527)
T ss_pred EEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce-eEec
Confidence 99998776 876431111111122234467888887432 222234788999988632 4654
No 83
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.09 E-value=1.5 Score=35.84 Aligned_cols=139 Identities=8% Similarity=0.091 Sum_probs=73.0
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCcccee-eeeEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMV-TAHAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~ 108 (202)
.+++++|+.+++.+.+...+...... ...-+|+ |++..... ....++++|..+.+-.++....... ......
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQG-----GNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP 299 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecC-----CCceEEEEECCCCceEEccCCCCccCceeEcC
Confidence 57899999998887776544322211 1223565 44332221 2346899999888877776332211 112233
Q ss_pred CCE-EEEEe-CCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 109 GKK-LFCME-WKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 109 ~~~-iyv~G-g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
+++ |+... ......++.+|..+...+.+... .. ..........++.|++.. .......++.+|++++
T Consensus 300 DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~-~~~~~~~SpdG~~ia~~~-~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 300 DGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GG-RYSTPVWSPRGDLIAFTK-QGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CC-cccCeEECCCCCEEEEEE-cCCCceEEEEEECCCC
Confidence 444 44332 11235788899888877777521 11 111122222234444433 2222346888888665
No 84
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.06 E-value=1.1 Score=35.87 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=61.3
Q ss_pred CCeEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEecc-----CCCCCCCCCeeEEEECCeEEEEccc
Q 028925 89 RHTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPV-----PLTGSSSIGFRFGILDGKLLLFSLE 163 (202)
Q Consensus 89 ~~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~-----~~~~~~~~~~~~~~~~~~i~v~gG~ 163 (202)
.+.|+.++.+.....-++.++|++|++. ....+++++.+-. -++++. +..+.......++...|+++++...
T Consensus 189 ~~~Wt~l~~~~~~~~DIi~~kGkfYAvD--~~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~ 265 (373)
T PLN03215 189 GNVLKALKQMGYHFSDIIVHKGQTYALD--SIGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERL 265 (373)
T ss_pred CCeeeEccCCCceeeEEEEECCEEEEEc--CCCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEE
Confidence 4899999865556677889999999994 4678888885321 122221 1111112234566778889988763
Q ss_pred CC--------------C--CceeEEEeCCCCCCCcceeecccCC
Q 028925 164 EE--------------P--SYSTLLYDPNAASGSEWQTSKIKPS 191 (202)
Q Consensus 164 ~~--------------~--~~~~~~yd~~~~~~~~W~~~~~~p~ 191 (202)
.. . ...|+..|.+.. +|.++..+..
T Consensus 266 ~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~---~WveV~sLgd 306 (373)
T PLN03215 266 PKESTWKRKADGFEYSRTVGFKVYKFDDELA---KWMEVKTLGD 306 (373)
T ss_pred ccCcccccccccccccceeEEEEEEEcCCCC---cEEEecccCC
Confidence 21 0 124566677777 9999977753
No 85
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.04 E-value=1.3 Score=34.65 Aligned_cols=105 Identities=13% Similarity=0.032 Sum_probs=65.4
Q ss_pred ceEEEEeCCCC-----eEEecc--CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc-EEEeccCCCCCCCCCeeEE
Q 028925 80 KFVDVYNPERH-----TWCQMK--NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS-WKMVPVPLTGSSSIGFRFG 151 (202)
Q Consensus 80 ~~~~~yd~~~~-----~W~~~~--~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~ 151 (202)
..+.+|+.... +.+.+. +......+...++++|.+.- .+.+..|+...+. +...+....+ .....+.
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~---g~~l~v~~l~~~~~l~~~~~~~~~--~~i~sl~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV---GNKLYVYDLDNSKTLLKKAFYDSP--FYITSLS 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE---TTEEEEEEEETTSSEEEEEEE-BS--SSEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee---cCEEEEEEccCcccchhhheecce--EEEEEEe
Confidence 67889988774 555554 23333455677788866553 4778888888877 8887633223 3555666
Q ss_pred EECCeEEEEcccCCCCceeEEEeCCCCCCCcceeecccCCcee
Q 028925 152 ILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSKIKPSGLC 194 (202)
Q Consensus 152 ~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~~p~~~~ 194 (202)
..++.|++ |....+..++.|+.+.. +-..+..-+.++.
T Consensus 137 ~~~~~I~v--gD~~~sv~~~~~~~~~~---~l~~va~d~~~~~ 174 (321)
T PF03178_consen 137 VFKNYILV--GDAMKSVSLLRYDEENN---KLILVARDYQPRW 174 (321)
T ss_dssp EETTEEEE--EESSSSEEEEEEETTTE----EEEEEEESS-BE
T ss_pred ccccEEEE--EEcccCEEEEEEEccCC---EEEEEEecCCCcc
Confidence 78887776 44445557778888665 5666644333433
No 86
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=94.92 E-value=1.5 Score=34.75 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=77.4
Q ss_pred eEEEEE--CCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCC-----CCCceeeeeEEEC-CEEEEEcCccCCCCC
Q 028925 8 FACAEV--NGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESL-----RRPRWGCFACSFD-GKLYVMGGRSSFTIG 77 (202)
Q Consensus 8 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~-----~~~r~~~~~~~~~-~~iy~~gG~~~~~~~ 77 (202)
|.+... ++.+|+.. .. .+.+++|+...++ ....... ..|| |.+..-+ ..+|++.-.+
T Consensus 147 H~v~~~pdg~~v~v~d-lG-----~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~s----- 213 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPD-LG-----ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNELS----- 213 (345)
T ss_dssp EEEEE-TTSSEEEEEE-TT-----TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETTT-----
T ss_pred eeEEECCCCCEEEEEe-cC-----CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCCC-----
Confidence 444444 34677763 11 2356777766555 5443221 2233 3333334 4688876432
Q ss_pred CcceEEEEeCCCCeEEecc-----Ccc---c-eeeeeEEE--CCEEEEEeCCCCCeEEEEeC--CCCcEEEeccCCCCCC
Q 028925 78 NSKFVDVYNPERHTWCQMK-----NGC---V-MVTAHAVV--GKKLFCMEWKNQRKLTIFDP--EDNSWKMVPVPLTGSS 144 (202)
Q Consensus 78 ~~~~~~~yd~~~~~W~~~~-----~~~---~-~~~~~~~~--~~~iyv~Gg~~~~~~~~yd~--~~~~W~~~~~~~~~~~ 144 (202)
+.=.++.++..+.+++.+. +.. . ......+. +..||+... ..+.+.+|+. .+.+-+.+...... .
T Consensus 214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~~~~-G 291 (345)
T PF10282_consen 214 NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTVPTG-G 291 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEEEES-S
T ss_pred CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEEeCC-C
Confidence 1223444554577776655 111 1 11222222 446888753 3667777776 55666666521111 1
Q ss_pred CCCeeEEE-ECCeEEEEcccCCCCceeEEEeCCCCCCCcceeec
Q 028925 145 SIGFRFGI-LDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSK 187 (202)
Q Consensus 145 ~~~~~~~~-~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~ 187 (202)
...-.++. -+|+.+++.........++..|.+++ .++.+.
T Consensus 292 ~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG---~l~~~~ 332 (345)
T PF10282_consen 292 KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG---KLTPVG 332 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT---EEEEEE
T ss_pred CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC---cEEEec
Confidence 11122333 34554444444343445556677887 888874
No 87
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.89 E-value=1.7 Score=35.40 Aligned_cols=107 Identities=12% Similarity=0.171 Sum_probs=59.6
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCe-EEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCC
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKW-NLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERH 90 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~ 90 (202)
-.+|+|+.+|+.. ..+-+||.+++.= +.+-....|...-..+..++.+++.|+-+ +.+..+|..+.
T Consensus 77 R~DG~LlaaGD~s------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-------~v~k~~d~s~a 143 (487)
T KOG0310|consen 77 RSDGRLLAAGDES------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-------KVVKYWDLSTA 143 (487)
T ss_pred ecCCeEEEccCCc------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-------ceEEEEEcCCc
Confidence 3479999998753 4588999655221 11111122222222334688888887632 34555566555
Q ss_pred eEE-eccCccce-eeee-EEECCEEEEEeCCCCCeEEEEeCCCCc
Q 028925 91 TWC-QMKNGCVM-VTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 91 ~W~-~~~~~~~~-~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
.-. .+.....+ +++. ...++.|++.|| ....+-.||+.+.+
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGs-YDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGS-YDGKVRLWDTRSLT 187 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecC-CCceEEEEEeccCC
Confidence 421 11122222 2222 334667888776 78899999998874
No 88
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=94.88 E-value=0.71 Score=30.88 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=55.6
Q ss_pred EEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCC---CCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEE-e
Q 028925 11 AEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESL---RRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVY-N 86 (202)
Q Consensus 11 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~y-d 86 (202)
+.+||-||-..-. .......+..||..+.+|+.++.+ .........+.++|+|.++.-..... ...-++|+. |
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLeD 78 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLED 78 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEeec
Confidence 4578889888654 122345789999999999877542 34446667778999999986443221 122456666 4
Q ss_pred CCCCeEEecc
Q 028925 87 PERHTWCQMK 96 (202)
Q Consensus 87 ~~~~~W~~~~ 96 (202)
..+.+|.+..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6678899764
No 89
>PTZ00421 coronin; Provisional
Probab=94.74 E-value=2.1 Score=35.76 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=66.3
Q ss_pred EEEEEcCcCCCCCceeeeEEEeCCCCCeEE-cCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEE-
Q 028925 16 KIYAVGGYGMDGESLSSAEVYDPDTDKWNL-IESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC- 93 (202)
Q Consensus 16 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~- 93 (202)
.+++.||.+ ..+.+||+.+.+-.. +...... ........++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 139 ~iLaSgs~D------gtVrIWDl~tg~~~~~l~~h~~~-V~sla~spdG~lLatgs~D-------g~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 139 NVLASAGAD------MVVNVWDVERGKAVEVIKCHSDQ-ITSLEWNLDGSLLCTTSKD-------KKLNIIDPRDGTIVS 204 (493)
T ss_pred CEEEEEeCC------CEEEEEECCCCeEEEEEcCCCCc-eEEEEEECCCCEEEEecCC-------CEEEEEECCCCcEEE
Confidence 455555543 347778887654221 1111111 1111112367777776643 46889999876521
Q ss_pred eccCccce-eeeeE-EE-CCEEEEEeC--CCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEE--ECCeEEEEcccC
Q 028925 94 QMKNGCVM-VTAHA-VV-GKKLFCMEW--KNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGI--LDGKLLLFSLEE 164 (202)
Q Consensus 94 ~~~~~~~~-~~~~~-~~-~~~iyv~Gg--~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~--~~~~i~v~gG~~ 164 (202)
.+...... ..... .. ++.|+..|. ...+.+.+||..+.. ..... .. ......+.. .++.+++++|..
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~---~d-~~~~~~~~~~d~d~~~L~lggkg 280 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD---LD-QSSALFIPFFDEDTNLLYIGSKG 280 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec---cC-CCCceEEEEEcCCCCEEEEEEeC
Confidence 11111110 11111 12 344554442 234679999986433 11111 01 011122222 256666666532
Q ss_pred CCCceeEEEeCCCC
Q 028925 165 EPSYSTLLYDPNAA 178 (202)
Q Consensus 165 ~~~~~~~~yd~~~~ 178 (202)
. ..+..||..++
T Consensus 281 D--g~Iriwdl~~~ 292 (493)
T PTZ00421 281 E--GNIRCFELMNE 292 (493)
T ss_pred C--CeEEEEEeeCC
Confidence 2 25788888776
No 90
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.66 E-value=0.74 Score=36.17 Aligned_cols=92 Identities=16% Similarity=0.185 Sum_probs=52.7
Q ss_pred EECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccC
Q 028925 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVP 139 (202)
Q Consensus 60 ~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~ 139 (202)
-+++| |++.... .+++.+++..|...-+.-..-+..-+..-+++++.|-| ++.+++..+|.+.+.--++-
T Consensus 327 dfd~k-yIVsASg------DRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSG-SSDntIRlwdi~~G~cLRvL-- 396 (499)
T KOG0281|consen 327 DFDDK-YIVSASG------DRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSG-SSDNTIRLWDIECGACLRVL-- 396 (499)
T ss_pred ccccc-eEEEecC------CceEEEEeccceeeehhhhcccccceehhccCeEEEec-CCCceEEEEeccccHHHHHH--
Confidence 35777 4443222 35678888877766554322222333456788888876 47788999888877654441
Q ss_pred CCCCCCCCeeEEEECCeEEEEccc
Q 028925 140 LTGSSSIGFRFGILDGKLLLFSLE 163 (202)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~v~gG~ 163 (202)
.- ...-...+..|++=.|-|++
T Consensus 397 eG--HEeLvRciRFd~krIVSGaY 418 (499)
T KOG0281|consen 397 EG--HEELVRCIRFDNKRIVSGAY 418 (499)
T ss_pred hc--hHHhhhheeecCceeeeccc
Confidence 00 12222344556666666654
No 91
>PRK13684 Ycf48-like protein; Provisional
Probab=94.58 E-value=1.8 Score=34.20 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=65.6
Q ss_pred eCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEE--eCCCCeEEecc-Ccc---ceeeeeE-EEC
Q 028925 37 DPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVY--NPERHTWCQMK-NGC---VMVTAHA-VVG 109 (202)
Q Consensus 37 d~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~y--d~~~~~W~~~~-~~~---~~~~~~~-~~~ 109 (202)
|....+|+.+...........+..-++.++++|... ..++ +-.-.+|+... |.. ....++. ..+
T Consensus 200 ~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G---------~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 200 EPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG---------QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred CCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCC---------EEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 444567988854322222222223477888886421 2233 22335888755 211 1112222 236
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEE-ECCeEEEEcccCCCCceeEEEeCCC
Q 028925 110 KKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGI-LDGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 110 ~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
+.++++|. ...+..-.....+|+.+..+... ......++. .++++|++|... .++.|+...
T Consensus 271 ~~~~~~G~--~G~v~~S~d~G~tW~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~~G----~il~~~~~~ 332 (334)
T PRK13684 271 GEIWAGGG--NGTLLVSKDGGKTWEKDPVGEEV-PSNFYKIVFLDPEKGFVLGQRG----VLLRYVGSA 332 (334)
T ss_pred CCEEEEcC--CCeEEEeCCCCCCCeECCcCCCC-CcceEEEEEeCCCceEEECCCc----eEEEecCCC
Confidence 67888873 45555545556799998532111 123334443 478888887432 577776654
No 92
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.51 E-value=1.5 Score=32.95 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=56.4
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEE--ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACS--FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~ 108 (202)
..+..||+.++.=.++......+.+.+++- .+|+-..-||.+ ..+.++|...-.-.+.-.........+..
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-------gt~kIWdlR~~~~qR~~~~~spVn~vvlh 133 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-------GTVKIWDLRSLSCQRNYQHNSPVNTVVLH 133 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-------ceEEEEeccCcccchhccCCCCcceEEec
Confidence 458889998876333333333444445444 477765566643 35677776553322222112111222333
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCC
Q 028925 109 GKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTG 142 (202)
Q Consensus 109 ~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~ 142 (202)
.+.--++-|..+..++++|..++.......|...
T Consensus 134 pnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred CCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 3333334445788999999999977665434333
No 93
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.49 E-value=1.6 Score=33.34 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=67.5
Q ss_pred EECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-Ccccee---eeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 028925 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NGCVMV---TAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKM 135 (202)
Q Consensus 60 ~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~---~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~ 135 (202)
.-+|.+|...=.. +-+-..||.+..=+.++ |..... ...+-..+++.+... ....++.||+.+..|++
T Consensus 197 tpdGsvwyaslag-------naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~sW~e 268 (353)
T COG4257 197 TPDGSVWYASLAG-------NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTSWIE 268 (353)
T ss_pred CCCCcEEEEeccc-------cceEEcccccCCcceecCCCcccccccccccCccCcEEEecc-CCceeeEeCccccccee
Confidence 4588888763221 23566777776544554 222111 112233566776632 46789999999999999
Q ss_pred eccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceeeccc
Q 028925 136 VPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSKIK 189 (202)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~~ 189 (202)
-+.|... .+.....+-.-+++.+-- .....+.+||+++. +.+.++.+
T Consensus 269 ypLPgs~-arpys~rVD~~grVW~se---a~agai~rfdpeta---~ftv~p~p 315 (353)
T COG4257 269 YPLPGSK-ARPYSMRVDRHGRVWLSE---ADAGAIGRFDPETA---RFTVLPIP 315 (353)
T ss_pred eeCCCCC-CCcceeeeccCCcEEeec---cccCceeecCcccc---eEEEecCC
Confidence 8643222 233333333456777632 12347899999998 88776433
No 94
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.44 E-value=2.3 Score=34.82 Aligned_cols=145 Identities=14% Similarity=0.032 Sum_probs=75.8
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeee-eEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTA-HAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~ 108 (202)
..++++|+.+++-+.+...+..-.. ....-+|+ |++..... ....++++|..+.+.+++......... ....
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~-----g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKT-----GSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCC-----CCcEEEEEECCCCCEEEccCCCCCcCceEECC
Confidence 4678888887776666544332111 11223554 54442221 123689999998887777633221111 2233
Q ss_pred CCEEEEEeCC--CCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 109 GKKLFCMEWK--NQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 109 ~~~iyv~Gg~--~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
+++.+++... ....++.+|.++..-+.+... ........ ..-+|+.+++.........++.+|++++ .++.+
T Consensus 297 DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~--~~~~~~~~-~SpDG~~Ia~~~~~~g~~~I~~~dl~~g---~~~~L 370 (429)
T PRK03629 297 DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWE--GSQNQDAD-VSSDGKFMVMVSSNGGQQHIAKQDLATG---GVQVL 370 (429)
T ss_pred CCCEEEEEeCCCCCceEEEEECCCCCeEEeecC--CCCccCEE-ECCCCCEEEEEEccCCCceEEEEECCCC---CeEEe
Confidence 5543333221 234778889888777666421 11111222 2334544444333333347888999887 77766
Q ss_pred c
Q 028925 187 K 187 (202)
Q Consensus 187 ~ 187 (202)
.
T Consensus 371 t 371 (429)
T PRK03629 371 T 371 (429)
T ss_pred C
Confidence 3
No 95
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.33 E-value=0.57 Score=39.10 Aligned_cols=116 Identities=10% Similarity=0.129 Sum_probs=63.3
Q ss_pred ccccceEEEEE--CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcc
Q 028925 3 VARYDFACAEV--NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSK 80 (202)
Q Consensus 3 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~ 80 (202)
.|+.+..++.. .-.||+.|-. .++|++|+..+.|..-=....+-.++....--+.|+.+|+.. .
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg-------~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~-------g 197 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSG-------SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTED-------G 197 (703)
T ss_pred cCcCCccccccCCCccEEEeecC-------cceEEEEccccccccccccccccceeeeecCccceEEecccC-------c
Confidence 45555555543 5578877632 469999999888743211222222222222234477788754 3
Q ss_pred eEEEEeCCCCeEEe-cc--------Ccccee--eeeEEE-CCEEEEEeCCCCCeEEEEeCCCCc
Q 028925 81 FVDVYNPERHTWCQ-MK--------NGCVMV--TAHAVV-GKKLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 81 ~~~~yd~~~~~W~~-~~--------~~~~~~--~~~~~~-~~~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
.++.+||.+.+-.. +. |..... ..+..+ ++.|-+.-|.+.+.+++||+.+.+
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 68889987664111 11 111111 122333 446666656678889999876554
No 96
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.03 E-value=2 Score=32.51 Aligned_cols=159 Identities=16% Similarity=0.115 Sum_probs=86.1
Q ss_pred CccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCcee------------eeeEEECCEEEEEc
Q 028925 2 NVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWG------------CFACSFDGKLYVMG 69 (202)
Q Consensus 2 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~------------~~~~~~~~~iy~~g 69 (202)
|.+=.+...++.+|.+|.--. ...++.+||+.+++-.....||.+... .-.++=..-|+++=
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 334455566677888887532 346799999999986632233322211 11222233466663
Q ss_pred CccCCCCCCcceEEEEeCCCC----eEEeccCccceeeeeEEECCEEEEEeCCC---CCeEEEEeCCCCcEEEeccCCCC
Q 028925 70 GRSSFTIGNSKFVDVYNPERH----TWCQMKNGCVMVTAHAVVGKKLFCMEWKN---QRKLTIFDPEDNSWKMVPVPLTG 142 (202)
Q Consensus 70 G~~~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~---~~~~~~yd~~~~~W~~~~~~~~~ 142 (202)
...+.. ..--+-..||.+- +|..--+ .+....+.++-|.||++.... ..-.+.||+.+++=..+..+...
T Consensus 140 at~~~~--g~ivvskld~~tL~v~~tw~T~~~-k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~ 216 (250)
T PF02191_consen 140 ATEDNN--GNIVVSKLDPETLSVEQTWNTSYP-KRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPN 216 (250)
T ss_pred ecCCCC--CcEEEEeeCcccCceEEEEEeccC-chhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeecc
Confidence 322211 0112334555543 5654322 223344678889999997533 33457899998887776544333
Q ss_pred CCCCCeeEEEE---CCeEEEEcccCCCCceeEEEeC
Q 028925 143 SSSIGFRFGIL---DGKLLLFSLEEEPSYSTLLYDP 175 (202)
Q Consensus 143 ~~~~~~~~~~~---~~~i~v~gG~~~~~~~~~~yd~ 175 (202)
. ....+.+.+ +.+||+.. ......|+.
T Consensus 217 ~-~~~~~~l~YNP~dk~LY~wd-----~G~~v~Y~v 246 (250)
T PF02191_consen 217 P-YGNISMLSYNPRDKKLYAWD-----NGYQVTYDV 246 (250)
T ss_pred c-cCceEeeeECCCCCeEEEEE-----CCeEEEEEE
Confidence 2 223333333 68899875 123555554
No 97
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.67 E-value=5.8 Score=36.61 Aligned_cols=148 Identities=11% Similarity=0.050 Sum_probs=81.4
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCC----------C--CCceeeeeEE--EC-CEEEEEcCccCCCCCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESL----------R--RPRWGCFACS--FD-GKLYVMGGRSSFTIGN 78 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~----------~--~~r~~~~~~~--~~-~~iy~~gG~~~~~~~~ 78 (202)
++.|||....+ ..+++||+.++.......- . .....+.... -+ +.||+....
T Consensus 694 ~g~LyVad~~~------~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------- 760 (1057)
T PLN02919 694 NEKVYIAMAGQ------HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------- 760 (1057)
T ss_pred CCeEEEEECCC------CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-------
Confidence 56788874321 4588889877655432110 0 0001122222 23 358887542
Q ss_pred cceEEEEeCCCCeEEecc---C---c----------------cceeeee-EEECCEEEEEeCCCCCeEEEEeCCCCcEEE
Q 028925 79 SKFVDVYNPERHTWCQMK---N---G----------------CVMVTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNSWKM 135 (202)
Q Consensus 79 ~~~~~~yd~~~~~W~~~~---~---~----------------~~~~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~ 135 (202)
...+.+||+.++.-..+. + . -....++ ...++.|||... ..+.+.+||++++....
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVTT 839 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEEE
Confidence 246888998766532211 0 0 0011222 234678999874 57889999999988877
Q ss_pred eccCC----------CCCCCCCeeEEE-ECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 136 VPVPL----------TGSSSIGFRFGI-LDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 136 ~~~~~----------~~~~~~~~~~~~-~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
+.... ......-.++++ -+|+|||... ..+.|.++|.+++
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt---~Nn~Irvid~~~~ 890 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT---NNSLIRYLDLNKG 890 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC---CCCEEEEEECCCC
Confidence 65211 011112233333 3688999763 3447889998876
No 98
>PRK05137 tolB translocation protein TolB; Provisional
Probab=93.65 E-value=3.4 Score=33.87 Aligned_cols=163 Identities=10% Similarity=-0.002 Sum_probs=78.1
Q ss_pred ECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeE
Q 028925 13 VNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW 92 (202)
Q Consensus 13 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W 92 (202)
++.+|..+--.........++++.|.....=+.+.........+. -.-+|+..++..... ....++++|+.+++.
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~-wSpDG~~lay~s~~~----g~~~i~~~dl~~g~~ 238 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPR-FSPNRQEITYMSYAN----GRPRVYLLDLETGQR 238 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeE-ECCCCCEEEEEEecC----CCCEEEEEECCCCcE
Confidence 345555553211111225678999986543333332211111111 123555333332211 125799999998887
Q ss_pred EeccCcccee-eeeEEECC-EEEEEe-CCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCce
Q 028925 93 CQMKNGCVMV-TAHAVVGK-KLFCME-WKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYS 169 (202)
Q Consensus 93 ~~~~~~~~~~-~~~~~~~~-~iyv~G-g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~ 169 (202)
..+...+... ......++ .|++.. ......++.+|.++..-+.+... .. ...... ...+++-+++.........
T Consensus 239 ~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~-~~~~~~-~spDG~~i~f~s~~~g~~~ 315 (435)
T PRK05137 239 ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS-PA-IDTSPS-YSPDGSQIVFESDRSGSPQ 315 (435)
T ss_pred EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCC-CC-ccCcee-EcCCCCEEEEEECCCCCCe
Confidence 7766322221 11223355 444332 22346788999998887776521 11 111111 1234443333332222346
Q ss_pred eEEEeCCCCCCCcceee
Q 028925 170 TLLYDPNAASGSEWQTS 186 (202)
Q Consensus 170 ~~~yd~~~~~~~~W~~~ 186 (202)
++++|.+++ ..+.+
T Consensus 316 Iy~~d~~g~---~~~~l 329 (435)
T PRK05137 316 LYVMNADGS---NPRRI 329 (435)
T ss_pred EEEEECCCC---CeEEe
Confidence 888887765 55554
No 99
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=93.56 E-value=2.9 Score=32.86 Aligned_cols=145 Identities=17% Similarity=0.238 Sum_probs=76.9
Q ss_pred eeeEEEeCCCCCeEEcCCC-----CCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccC---ccc-
Q 028925 31 SSAEVYDPDTDKWNLIESL-----RRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKN---GCV- 100 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~~~- 100 (202)
..+..|+...+.-+...+. ..|| |.+.--+++ +|++.-.+ +.-.++.||+...+.++++. .|.
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPR--Hi~FHpn~k~aY~v~EL~-----stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPR--HIVFHPNGKYAYLVNELN-----STVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcc--eEEEcCCCcEEEEEeccC-----CEEEEEEEcCCCceEEEeeeeccCccc
Confidence 4577788776665544321 1233 333333555 77775332 23457778888888888771 111
Q ss_pred ---e-eeee--EEE-CCEEEEEe-CCCCCeEEEEeCCCCcEEEec-cCCCCC-CCCCeeEEEECCeEEEEcccCCCCcee
Q 028925 101 ---M-VTAH--AVV-GKKLFCME-WKNQRKLTIFDPEDNSWKMVP-VPLTGS-SSIGFRFGILDGKLLLFSLEEEPSYST 170 (202)
Q Consensus 101 ---~-~~~~--~~~-~~~iyv~G-g~~~~~~~~yd~~~~~W~~~~-~~~~~~-~~~~~~~~~~~~~i~v~gG~~~~~~~~ 170 (202)
. ..++ ... +.-||+.. |.++-.++..|+.+++-+.+. .+..+. +|. +.+ ..++++++.-+...+...+
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~-F~i-~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD-FNI-NPSGRFLIAANQKSDNITV 317 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc-cee-CCCCCEEEEEccCCCcEEE
Confidence 1 1222 222 44577764 223334445577777655554 122221 232 222 3455555555555555577
Q ss_pred EEEeCCCCCCCcceeec
Q 028925 171 LLYDPNAASGSEWQTSK 187 (202)
Q Consensus 171 ~~yd~~~~~~~~W~~~~ 187 (202)
+.-|++++ +-..+.
T Consensus 318 f~~d~~TG---~L~~~~ 331 (346)
T COG2706 318 FERDKETG---RLTLLG 331 (346)
T ss_pred EEEcCCCc---eEEecc
Confidence 77788888 777763
No 100
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.55 E-value=3.1 Score=33.21 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=87.9
Q ss_pred EEECCEEEEEcCcCCCCCceeeeEEEeCCCCC--eEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCC
Q 028925 11 AEVNGKIYAVGGYGMDGESLSSAEVYDPDTDK--WNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPE 88 (202)
Q Consensus 11 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~ 88 (202)
+..+++||+... . ..++.+|+.+.+ |+............-...-+|+||+-... ..+++||..
T Consensus 65 ~~~dg~v~~~~~---~----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~--------g~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVGTR---D----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD--------GKLYALDAS 129 (370)
T ss_pred EeeCCeEEEecC---C----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEeccc--------ceEEEEECC
Confidence 556889998721 1 158889998877 85443210011111112238888865432 268999984
Q ss_pred --CCeEEeccCc-cceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEEECCeEEEEccc
Q 028925 89 --RHTWCQMKNG-CVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGILDGKLLLFSLE 163 (202)
Q Consensus 89 --~~~W~~~~~~-~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~ 163 (202)
+..|..-.+. .......++.++.+|+.. ..+.++.+|.++.+ |+.-.... ...+.....+..++.+|+-...
T Consensus 130 ~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s--~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~ 206 (370)
T COG1520 130 TGTLVWSRNVGGSPYYASPPVVGDGTVYVGT--DDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDG 206 (370)
T ss_pred CCcEEEEEecCCCeEEecCcEEcCcEEEEec--CCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCC
Confidence 4568876655 333344556677777652 46788888887554 88543221 1123233333667788875422
Q ss_pred CCCCceeEEEeCCCCCCCccee
Q 028925 164 EEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 164 ~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
. ...++.+|++++ .-.|+.
T Consensus 207 -~-~~~~~a~~~~~G-~~~w~~ 225 (370)
T COG1520 207 -Y-DGILYALNAEDG-TLKWSQ 225 (370)
T ss_pred -C-cceEEEEEccCC-cEeeee
Confidence 1 226888888764 226774
No 101
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.52 E-value=2.1 Score=30.96 Aligned_cols=106 Identities=19% Similarity=0.106 Sum_probs=57.0
Q ss_pred ceEEEEEC-CEEEEEcCcCCCCCceeeeEEEeCCCCCe---EEcCC--CCC--CceeeeeEEE-CCEEEEEcCccCCCCC
Q 028925 7 DFACAEVN-GKIYAVGGYGMDGESLSSAEVYDPDTDKW---NLIES--LRR--PRWGCFACSF-DGKLYVMGGRSSFTIG 77 (202)
Q Consensus 7 ~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W---~~~~~--~~~--~r~~~~~~~~-~~~iy~~gG~~~~~~~ 77 (202)
.++....+ +++|++-|. ..|+||..+... +.+.. ++. ....++...- ++++|++.|.
T Consensus 54 DAa~~~~~~~~~yfFkg~--------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~------ 119 (194)
T cd00094 54 DAAFERPDTGKIYFFKGD--------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD------ 119 (194)
T ss_pred cEEEEECCCCEEEEECCC--------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC------
Confidence 33333333 899999663 578888664222 11111 111 1122222222 6899999773
Q ss_pred CcceEEEEeCCCCeEEec-c--------CccceeeeeEEEC-CEEEEEeCCCCCeEEEEeCCCCc
Q 028925 78 NSKFVDVYNPERHTWCQM-K--------NGCVMVTAHAVVG-KKLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 78 ~~~~~~~yd~~~~~W~~~-~--------~~~~~~~~~~~~~-~~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
..++||..+++...- + ..+....++.... +.+|++ .....+.||..+.+
T Consensus 120 ---~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF---~g~~y~~~d~~~~~ 178 (194)
T cd00094 120 ---KYWRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFF---KGDQYWRFDPRSKE 178 (194)
T ss_pred ---EEEEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEE---ECCEEEEEeCccce
Confidence 467777655543211 0 0111123333344 889999 45678999988776
No 102
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=93.21 E-value=3.4 Score=32.66 Aligned_cols=144 Identities=18% Similarity=0.182 Sum_probs=79.6
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeE--EECCEEEEEcCccCCCCCCcceEEEEeCC--C
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFAC--SFDGKLYVMGGRSSFTIGNSKFVDVYNPE--R 89 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~iy~~gG~~~~~~~~~~~~~~yd~~--~ 89 (202)
+..+-+-||.+ +..+.|+..+..|.-. ++.-....+.+ .++|.+..-|+.++ .+.+++.. .
T Consensus 75 ~~~l~aTGGgD------D~AflW~~~~ge~~~e--ltgHKDSVt~~~FshdgtlLATGdmsG-------~v~v~~~stg~ 139 (399)
T KOG0296|consen 75 NNNLVATGGGD------DLAFLWDISTGEFAGE--LTGHKDSVTCCSFSHDGTLLATGDMSG-------KVLVFKVSTGG 139 (399)
T ss_pred CCceEEecCCC------ceEEEEEccCCcceeE--ecCCCCceEEEEEccCceEEEecCCCc-------cEEEEEcccCc
Confidence 66777777754 3467789888885322 33333333333 46788887777653 35555544 4
Q ss_pred CeEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCce
Q 028925 90 HTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYS 169 (202)
Q Consensus 90 ~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~ 169 (202)
.+|....+......-.-.....|+++| .....+|.|...+..-.++ +.-+.....++-..-+||-.+.|-. ...
T Consensus 140 ~~~~~~~e~~dieWl~WHp~a~illAG-~~DGsvWmw~ip~~~~~kv--~~Gh~~~ct~G~f~pdGKr~~tgy~---dgt 213 (399)
T KOG0296|consen 140 EQWKLDQEVEDIEWLKWHPRAHILLAG-STDGSVWMWQIPSQALCKV--MSGHNSPCTCGEFIPDGKRILTGYD---DGT 213 (399)
T ss_pred eEEEeecccCceEEEEecccccEEEee-cCCCcEEEEECCCcceeeE--ecCCCCCcccccccCCCceEEEEec---Cce
Confidence 467665322111111111144566666 4788999999887633333 2122233334434456666666532 236
Q ss_pred eEEEeCCCC
Q 028925 170 TLLYDPNAA 178 (202)
Q Consensus 170 ~~~yd~~~~ 178 (202)
+..||+.+.
T Consensus 214 i~~Wn~ktg 222 (399)
T KOG0296|consen 214 IIVWNPKTG 222 (399)
T ss_pred EEEEecCCC
Confidence 788888775
No 103
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.11 E-value=3.4 Score=32.29 Aligned_cols=143 Identities=14% Similarity=0.040 Sum_probs=66.3
Q ss_pred EEEEEcCcCCCCCceeeeEEEeCCC-CCeEEcCCCCCCceeeeeE-EECCE-EEEEcCccCCCCCCcceEEEEeCC-CCe
Q 028925 16 KIYAVGGYGMDGESLSSAEVYDPDT-DKWNLIESLRRPRWGCFAC-SFDGK-LYVMGGRSSFTIGNSKFVDVYNPE-RHT 91 (202)
Q Consensus 16 ~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~-~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~-~~~ 91 (202)
++|+....+ +.+.+||..+ .+++.+..++.....+.++ .-+++ ||+.+. . ...+.+|+.. +.+
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~-~------~~~i~~~~~~~~g~ 69 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR-P------EFRVLSYRIADDGA 69 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC-C------CCcEEEEEECCCCc
Confidence 578875432 4567777753 4666554443222111222 22454 565432 1 2456667664 455
Q ss_pred EEecc--CccceeeeeEE-ECC-EEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEEE-C-CeEEEEccc
Q 028925 92 WCQMK--NGCVMVTAHAV-VGK-KLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGIL-D-GKLLLFSLE 163 (202)
Q Consensus 92 W~~~~--~~~~~~~~~~~-~~~-~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~-~-~~i~v~gG~ 163 (202)
++.+. +.......... .++ .+|+... ..+.+..||.+++. .+.+... .. ....+.++.. + +.+|+..
T Consensus 70 l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~-~~-~~~~~~~~~~p~g~~l~v~~-- 144 (330)
T PRK11028 70 LTFAAESPLPGSPTHISTDHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQII-EG-LEGCHSANIDPDNRTLWVPC-- 144 (330)
T ss_pred eEEeeeecCCCCceEEEECCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeec-cC-CCcccEeEeCCCCCEEEEee--
Confidence 65443 11111122222 234 5776653 36778888876432 1222111 11 1112233222 3 4566544
Q ss_pred CCCCceeEEEeCCC
Q 028925 164 EEPSYSTLLYDPNA 177 (202)
Q Consensus 164 ~~~~~~~~~yd~~~ 177 (202)
.....+.+||..+
T Consensus 145 -~~~~~v~v~d~~~ 157 (330)
T PRK11028 145 -LKEDRIRLFTLSD 157 (330)
T ss_pred -CCCCEEEEEEECC
Confidence 1233688888765
No 104
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.96 E-value=4.6 Score=33.42 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=76.0
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEE
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC 93 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~ 93 (202)
.+++++.|+.+ ..+.++|..+.+-.+.-..........+..-++.+++.+.. ...+.+||..+.+-.
T Consensus 257 ~g~~i~Sgs~D------~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-------d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 257 DGNLLVSGSDD------GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY-------DGTIRVWDLETGSKL 323 (456)
T ss_pred CCCEEEEecCC------CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC-------CccEEEEECCCCcee
Confidence 55788887765 35788899885544332212222222223346777777644 246899999888732
Q ss_pred ---eccC--ccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEE-EECCeEEEEcccCCCC
Q 028925 94 ---QMKN--GCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFG-ILDGKLLLFSLEEEPS 167 (202)
Q Consensus 94 ---~~~~--~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~~~~ 167 (202)
.+.. .+..........+..|++-+...+.+-.||.....--..-.......+.....+ .-+++..+.|.+ .
T Consensus 324 ~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~---d 400 (456)
T KOG0266|consen 324 CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE---D 400 (456)
T ss_pred eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC---C
Confidence 3331 111122223324444555444556777777765543332211111112222333 235666666643 2
Q ss_pred ceeEEEeCCCC
Q 028925 168 YSTLLYDPNAA 178 (202)
Q Consensus 168 ~~~~~yd~~~~ 178 (202)
..+..||+.+.
T Consensus 401 ~~v~~~~~~s~ 411 (456)
T KOG0266|consen 401 GSVYVWDSSSG 411 (456)
T ss_pred ceEEEEeCCcc
Confidence 35778887753
No 105
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.96 E-value=4.2 Score=32.95 Aligned_cols=145 Identities=13% Similarity=0.143 Sum_probs=83.4
Q ss_pred eeeeEEEeCCCC-----CeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCe---EE-eccCccc
Q 028925 30 LSSAEVYDPDTD-----KWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHT---WC-QMKNGCV 100 (202)
Q Consensus 30 ~~~~~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~---W~-~~~~~~~ 100 (202)
.+.++..|.... +|..+.+..... ...+...++.+|+...... ....+..++..+.. |. .+.+...
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~~~yi~Tn~~a----~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPREDGV-EYYVDHHGDRLYILTNDDA----PNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT-----TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCCCce-EEEEEccCCEEEEeeCCCC----CCcEEEEecccccccccceeEEcCCCC
Confidence 467999999875 788876522222 2233445899999865322 34567888777654 55 5543322
Q ss_pred --eeeeeEEECCEEEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEE---ECCeEEE-EcccCCCCceeEEE
Q 028925 101 --MVTAHAVVGKKLFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGI---LDGKLLL-FSLEEEPSYSTLLY 173 (202)
Q Consensus 101 --~~~~~~~~~~~iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~i~v-~gG~~~~~~~~~~y 173 (202)
....+...++.|++.-- +....+.+||+. ..|.....+.+. ........ ..+.+++ +.+...+. .++.|
T Consensus 326 ~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~-~~y~~ 401 (414)
T PF02897_consen 326 DVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPP-TVYRY 401 (414)
T ss_dssp SEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEE-EEEEE
T ss_pred ceeEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCC-EEEEE
Confidence 44556677888887742 235678899988 344444323333 22112221 1355554 55665554 89999
Q ss_pred eCCCCCCCcceee
Q 028925 174 DPNAASGSEWQTS 186 (202)
Q Consensus 174 d~~~~~~~~W~~~ 186 (202)
|..++ +-+.+
T Consensus 402 d~~t~---~~~~~ 411 (414)
T PF02897_consen 402 DLATG---ELTLL 411 (414)
T ss_dssp ETTTT---CEEEE
T ss_pred ECCCC---CEEEE
Confidence 99998 65544
No 106
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.88 E-value=6.6 Score=34.97 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCEEEEEcCccCCCCCCcceEEEEeCCCCe--EEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCC
Q 028925 62 DGKLYVMGGRSSFTIGNSKFVDVYNPERHT--WCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPED 130 (202)
Q Consensus 62 ~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~ 130 (202)
++++++.|+.+ ..+.+||..+.+ ...+.............++..++.++ ....+.+||...
T Consensus 629 ~g~~latgs~d-------g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s-~D~~ikiWd~~~ 691 (793)
T PLN00181 629 SGRSLAFGSAD-------HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSS-TDNTLKLWDLSM 691 (793)
T ss_pred CCCEEEEEeCC-------CeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEE-CCCEEEEEeCCC
Confidence 46677776543 468899986543 22222111112223333555555554 566788888764
No 107
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.79 E-value=4.8 Score=33.21 Aligned_cols=143 Identities=9% Similarity=0.026 Sum_probs=74.2
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCcccee-eeeEEEC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMV-TAHAVVG 109 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~~ 109 (202)
.+++++|+.+++.+++......... ..-.-+++.+++..... ....++++|..+++++++....... ......+
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~~~~~-p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRAIDTE-PSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred eEEEEEECCCCCeEECccCCCCccc-eEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence 4689999999888777543211111 11223555333332211 2347899999988888875211111 1123334
Q ss_pred C-EEEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 110 K-KLFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 110 ~-~iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
+ .|+.... .....++.+|+.+...+.+..... ...... ..+++.+++.........++.++.+. .+...
T Consensus 361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~---d~~ps~-spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~ 431 (448)
T PRK04792 361 GRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL---DESPSV-APNGTMVIYSTTYQGKQVLAAVSIDG----RFKAR 431 (448)
T ss_pred CCEEEEEEecCCceEEEEEECCCCCeEEccCCCC---CCCceE-CCCCCEEEEEEecCCceEEEEEECCC----CceEE
Confidence 4 4555432 123468889999988877652211 111222 33454444433322233577777744 45553
No 108
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.78 E-value=3.1 Score=32.83 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=68.6
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC-------CCceeeeeEEECCEEEEEcCccCCCCCCcceEEE
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR-------RPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDV 84 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-------~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~ 84 (202)
..+..+||. +-.+..++-+.|+..++-...-+.| .+-..+++.--+|.+..+.=-.+... ..+.-.+
T Consensus 104 ~dgk~~~V~-----N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~-~~~~t~~ 177 (342)
T PF06433_consen 104 ADGKFLYVQ-----NFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE-AQKSTKV 177 (342)
T ss_dssp TTSSEEEEE-----EESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE-EEEEEEE
T ss_pred cCCcEEEEE-----ccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE-eEeeccc
Confidence 345677776 3456678999999998874332222 11011121112444443321111111 1233457
Q ss_pred EeCCCCeEEeccC--ccceeeeeEEECCEEEEEe--CCCCCeEEEEeCCC-----CcEEEeccCCCCCCCCCeeEEEECC
Q 028925 85 YNPERHTWCQMKN--GCVMVTAHAVVGKKLFCME--WKNQRKLTIFDPED-----NSWKMVPVPLTGSSSIGFRFGILDG 155 (202)
Q Consensus 85 yd~~~~~W~~~~~--~~~~~~~~~~~~~~iyv~G--g~~~~~~~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~ 155 (202)
|++..+-.-.-+. ..........++|+||.+. |....-...+...+ ..|+.-+ ....++....+
T Consensus 178 F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG-------~Q~~A~~~~~~ 250 (342)
T PF06433_consen 178 FDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG-------WQLIAYHAASG 250 (342)
T ss_dssp SSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S-------SS-EEEETTTT
T ss_pred cCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc-------eeeeeeccccC
Confidence 7776653222221 1111122245677777753 21111111222211 2333321 22233333478
Q ss_pred eEEEEcc---c---CCCCceeEEEeCCCC
Q 028925 156 KLLLFSL---E---EEPSYSTLLYDPNAA 178 (202)
Q Consensus 156 ~i~v~gG---~---~~~~~~~~~yd~~~~ 178 (202)
+|||+-- + ..++..||+||++++
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~ 279 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTH 279 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTT
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCC
Confidence 9998642 1 223348999999997
No 109
>PRK04043 tolB translocation protein TolB; Provisional
Probab=92.69 E-value=4.8 Score=32.95 Aligned_cols=143 Identities=16% Similarity=0.096 Sum_probs=81.3
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECC-EEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccce-eeeeEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDG-KLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVM-VTAHAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-~~~~~~~ 108 (202)
.++|++|+.+++=+.+...+..- ......-+| +|.+.-... ....++++|..+.+++++...+.. .......
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SP 286 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-VVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVE 286 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-EeeEECCCCCEEEEEEccC-----CCcEEEEEECCCCcEEEcccCCCccCccEECC
Confidence 37999999888777765432211 112223355 454443222 235799999999999988743321 1122333
Q ss_pred CC-EEEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCC-----CCceeEEEeCCCCCCC
Q 028925 109 GK-KLFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEE-----PSYSTLLYDPNAASGS 181 (202)
Q Consensus 109 ~~-~iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~-----~~~~~~~yd~~~~~~~ 181 (202)
++ +|+..-. .....++.+|.++.+.+++... . .........++.|........ ....++.+|++++
T Consensus 287 DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g--~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--- 359 (419)
T PRK04043 287 DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--G--KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--- 359 (419)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEeCccC--C--CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC---
Confidence 44 5666532 1245789999999888777421 1 112222223444544433221 1247899999888
Q ss_pred cceee
Q 028925 182 EWQTS 186 (202)
Q Consensus 182 ~W~~~ 186 (202)
.++.+
T Consensus 360 ~~~~L 364 (419)
T PRK04043 360 YIRRL 364 (419)
T ss_pred CeEEC
Confidence 78877
No 110
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.69 E-value=3 Score=30.56 Aligned_cols=131 Identities=15% Similarity=0.183 Sum_probs=59.0
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEE--CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEe-ccCccceeeeeEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSF--DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQ-MKNGCVMVTAHAV 107 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~~~ 107 (202)
..+.+||..+++-... +...........+ ++++++.++. ...+.+||..+.+-.. +............
T Consensus 73 ~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 73 KTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSR-------DKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred CeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecC-------CCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 3577788776432211 1111111122222 3466666552 2468889887544222 2212212222233
Q ss_pred EC-CEEEEEeCCCCCeEEEEeCCCCcEE-EeccCCCCCCCCCeeEEEE-CCeEEEEcccCCCCceeEEEeCCCC
Q 028925 108 VG-KKLFCMEWKNQRKLTIFDPEDNSWK-MVPVPLTGSSSIGFRFGIL-DGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 108 ~~-~~iyv~Gg~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
.. +.+++.+ ...+.+.+||..+.+-. ... . . ...-..+... +++.+++++. ...+.+||..+.
T Consensus 144 ~~~~~~l~~~-~~~~~i~i~d~~~~~~~~~~~-~--~-~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~ 209 (289)
T cd00200 144 SPDGTFVASS-SQDGTIKLWDLRTGKCVATLT-G--H-TGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTG 209 (289)
T ss_pred cCcCCEEEEE-cCCCcEEEEEccccccceeEe-c--C-ccccceEEECCCcCEEEEecC---CCcEEEEECCCC
Confidence 33 4444444 34778999998754322 221 1 1 1111222222 3434555443 235778887653
No 111
>PTZ00421 coronin; Provisional
Probab=92.18 E-value=6.3 Score=33.07 Aligned_cols=62 Identities=24% Similarity=0.381 Sum_probs=35.5
Q ss_pred CEEEEEcCccCCCCCCcceEEEEeCCCCeEEe-ccCccceeeee-EEECCEEEEEeCCCCCeEEEEeCCCCc
Q 028925 63 GKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQ-MKNGCVMVTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 63 ~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
+.+++.|+.+ ..+.+||..+.+-.. +........+. ...++.+++.++ ..+.+.+||+.+.+
T Consensus 138 ~~iLaSgs~D-------gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs-~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD-------MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS-KDKKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC-------CEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec-CCCEEEEEECCCCc
Confidence 3566666543 468899988764222 21111111222 233666666664 57789999998765
No 112
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.57 E-value=6.5 Score=31.99 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=62.2
Q ss_pred EeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCC-----eEEecc-Cccc-eeeee-EE
Q 028925 36 YDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERH-----TWCQMK-NGCV-MVTAH-AV 107 (202)
Q Consensus 36 yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~-----~W~~~~-~~~~-~~~~~-~~ 107 (202)
.|.....|+.+......+........++.++++|... .+..-+.... +|.+++ +... ....+ ..
T Consensus 265 ~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G--------~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~ 336 (398)
T PLN00033 265 WEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG--------GLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYR 336 (398)
T ss_pred cCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc--------eEEEecCCCCcccccceeecccCCCCcceEEEEEc
Confidence 4444444898865443443333344688899886432 2333333333 455554 2111 12222 23
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCcEEEecc-CCCCCCCCCeeEE-EECCeEEEEc
Q 028925 108 VGKKLFCMEWKNQRKLTIFDPEDNSWKMVPV-PLTGSSSIGFRFG-ILDGKLLLFS 161 (202)
Q Consensus 108 ~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~-~~~~~i~v~g 161 (202)
-++.++++| ....+..-...-.+|++... ...+ ..-+.+. ..+++.|++|
T Consensus 337 ~d~~~~a~G--~~G~v~~s~D~G~tW~~~~~~~~~~--~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 337 SKKEAWAAG--GSGILLRSTDGGKSWKRDKGADNIA--ANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred CCCcEEEEE--CCCcEEEeCCCCcceeEccccCCCC--cceeEEEEcCCCceEEEe
Confidence 367899888 35666777778889999852 1122 1223444 3458999988
No 113
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.57 E-value=6.7 Score=32.12 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=71.7
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCcccee-eeeEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMV-TAHAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~ 108 (202)
..++++|+.+++=+.+...+.... .....-+|+ |++..... ...+++.+|..+...+++....... ......
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp 293 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRD-----GNSQIYTVNADGSGLRRLTQSSGIDTEPFFSP 293 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccC-----CCceEEEEECCCCCcEECCCCCCCCcCeEEcC
Confidence 458999998877655544332111 112223554 54433222 2357888888877766665322111 112233
Q ss_pred CCE-EEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 109 GKK-LFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 109 ~~~-iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
+++ |+.... .....++.+|..+...+.+... ............+..|+.... ......++++|..++ ..+.+
T Consensus 294 DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~-~~g~~~I~v~d~~~g---~~~~l 367 (427)
T PRK02889 294 DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISR-VGGAFKLYVQDLATG---QVTAL 367 (427)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEc-cCCcEEEEEEECCCC---CeEEc
Confidence 454 444331 1234677778777777776421 111112222222344443332 222347888898776 55554
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=91.13 E-value=8.6 Score=32.96 Aligned_cols=156 Identities=13% Similarity=0.213 Sum_probs=82.2
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCC-CCCeEEcCCCCCCceeeeeEE---ECCEEEEEcCccCCCCCCcceEEEEeC
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPD-TDKWNLIESLRRPRWGCFACS---FDGKLYVMGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~r~~~~~~~---~~~~iy~~gG~~~~~~~~~~~~~~yd~ 87 (202)
.-++.+.++|-.- ...+++..+. .-+-+.+.+++..+..+.... -++++++.. . +...++.++.
T Consensus 391 SPdg~~Ia~st~~-----~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s-~------~~~~le~~el 458 (691)
T KOG2048|consen 391 SPDGNLIAISTVS-----RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS-K------NIFSLEEFEL 458 (691)
T ss_pred CCCCCEEEEeecc-----ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-c------ccceeEEEEe
Confidence 3366666665321 1234444432 223456667777665544443 267777775 1 3456777777
Q ss_pred CCCeEEeccCcc-------ceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEE-EECCeEEE
Q 028925 88 ERHTWCQMKNGC-------VMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFG-ILDGKLLL 159 (202)
Q Consensus 88 ~~~~W~~~~~~~-------~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v 159 (202)
++.+-.++.+.. .........++.|-+++ ....+++||.++.+-..+...... .-..++.. ...++|.+
T Consensus 459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~--t~g~I~v~nl~~~~~~~l~~rln~-~vTa~~~~~~~~~~lvv 535 (691)
T KOG2048|consen 459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS--TRGQIFVYNLETLESHLLKVRLNI-DVTAAAFSPFVRNRLVV 535 (691)
T ss_pred cCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe--ccceEEEEEcccceeecchhccCc-ceeeeeccccccCcEEE
Confidence 776666654211 11122233466777775 578999999999987777521111 11111211 22455555
Q ss_pred EcccCCCCceeEEEeCCCCCCCcceee
Q 028925 160 FSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 160 ~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
.- ..++++.||.+...-.+|.+.
T Consensus 536 at----s~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 536 AT----SNNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred Ee----cCCeEEEEecchhhhhhhhhc
Confidence 43 234678888743222245443
No 115
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.96 E-value=7.3 Score=31.45 Aligned_cols=101 Identities=11% Similarity=0.050 Sum_probs=56.3
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeee-eEEE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTA-HAVV 108 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~ 108 (202)
.+++.+|+.+++.+.+........... ..-+++ |++.+... ....++++|..+.++.++......... ....
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~-~s~dg~~l~~~s~~~-----g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp 331 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPS-WSPDGKSIAFTSDRG-----GSPQIYMMDADGGEVRRLTFRGGYNASPSWSP 331 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEE-ECCCCCEEEEEECCC-----CCceEEEEECCCCCEEEeecCCCCccCeEECC
Confidence 468899998887776654322111111 123554 44443222 123689999988888777632222222 2233
Q ss_pred CCEEEEEeCC--CCCeEEEEeCCCCcEEEec
Q 028925 109 GKKLFCMEWK--NQRKLTIFDPEDNSWKMVP 137 (202)
Q Consensus 109 ~~~iyv~Gg~--~~~~~~~yd~~~~~W~~~~ 137 (202)
+++.+++... ....++.+|+.+..++.+.
T Consensus 332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 332 DGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred CCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 5554444321 2347899999987777665
No 116
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.86 E-value=1.1 Score=35.29 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=40.3
Q ss_pred CCEEEEEc---CcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE--EEEEcCccCCCCCCcceEEEEeCC
Q 028925 14 NGKIYAVG---GYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK--LYVMGGRSSFTIGNSKFVDVYNPE 88 (202)
Q Consensus 14 ~~~iyv~G---G~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~--iy~~gG~~~~~~~~~~~~~~yd~~ 88 (202)
.++|||+- +......+-..+|+||+++++--.--++..+-. ...+.-+.+ ||.+.+. ...+.+||..
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~-Si~Vsqd~~P~L~~~~~~-------~~~l~v~D~~ 320 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPID-SIAVSQDDKPLLYALSAG-------DGTLDVYDAA 320 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEES-EEEEESSSS-EEEEEETT-------TTEEEEEETT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccc-eEEEccCCCcEEEEEcCC-------CCeEEEEeCc
Confidence 67999983 333334567899999999987543333332222 222333444 5555331 2469999999
Q ss_pred CCeEE
Q 028925 89 RHTWC 93 (202)
Q Consensus 89 ~~~W~ 93 (202)
+.+-.
T Consensus 321 tGk~~ 325 (342)
T PF06433_consen 321 TGKLV 325 (342)
T ss_dssp T--EE
T ss_pred CCcEE
Confidence 88643
No 117
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.72 E-value=8.2 Score=30.12 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=55.4
Q ss_pred EEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEe--CCCCeEEecc-Cccc-ee--eee-E
Q 028925 34 EVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYN--PERHTWCQMK-NGCV-MV--TAH-A 106 (202)
Q Consensus 34 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd--~~~~~W~~~~-~~~~-~~--~~~-~ 106 (202)
...|+....|++.......|.......-++.|+++. +. ..+..-+ -...+|.+.. |... .. ..+ .
T Consensus 169 ~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G-------g~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 169 SSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG-------GQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp EEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT-------TEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred EEecCCCccceEEccCccceehhceecCCCCEEEEe-CC-------cEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 346888888988865555666555556678888874 11 1233333 2345677732 2211 11 111 2
Q ss_pred EECCEEEEEeCCCCCeEEEEeCCCCcEEEecc-CCCCCCCCCeeEEEECCeEEEEcc
Q 028925 107 VVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPV-PLTGSSSIGFRFGILDGKLLLFSL 162 (202)
Q Consensus 107 ~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~i~v~gG 162 (202)
.-++.+++.|| ...+++=.-.-++|++... ...+. ....-....+++-|++|.
T Consensus 241 ~~~~~~wa~gg--~G~l~~S~DgGktW~~~~~~~~~~~-n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 241 RPPNEIWAVGG--SGTLLVSTDGGKTWQKDRVGENVPS-NLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp SSSS-EEEEES--TT-EEEESSTTSS-EE-GGGTTSSS----EEEEEETTEEEEE-S
T ss_pred cCCCCEEEEeC--CccEEEeCCCCccceECccccCCCC-ceEEEEEcCCCceEEECC
Confidence 23678999986 4466666667888999862 22221 222222235689999984
No 118
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=89.63 E-value=11 Score=31.50 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=62.2
Q ss_pred eeEEEeCCCCC--eEEcCCCCCCceeeeeEEECCEEEEEcCccCC----------CCCCcceEEEEeCCCC--eEEeccC
Q 028925 32 SAEVYDPDTDK--WNLIESLRRPRWGCFACSFDGKLYVMGGRSSF----------TIGNSKFVDVYNPERH--TWCQMKN 97 (202)
Q Consensus 32 ~~~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~----------~~~~~~~~~~yd~~~~--~W~~~~~ 97 (202)
.++.+|+.+.+ |+.-.. ....+.-.+.+|+-...... .......+..+|..+. .|+.-..
T Consensus 312 ~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~ 385 (488)
T cd00216 312 FFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG 385 (488)
T ss_pred eEEEEECCCCcEeeEeEee------ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC
Confidence 58889998877 754321 00111122666663321100 0012346778887755 4776433
Q ss_pred ---------ccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEEECCeEEEE
Q 028925 98 ---------GCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGILDGKLLLF 160 (202)
Q Consensus 98 ---------~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~ 160 (202)
.+......+..++.||+.. ....++.+|.++.+ |+.-- .............++++||.
T Consensus 386 ~~~~~~~~g~~~~~~~~~~~g~~v~~g~--~dG~l~ald~~tG~~lW~~~~---~~~~~a~P~~~~~~g~~yv~ 454 (488)
T cd00216 386 TIRDSWNIGFPHWGGSLATAGNLVFAGA--ADGYFRAFDATTGKELWKFRT---PSGIQATPMTYEVNGKQYVG 454 (488)
T ss_pred ccccccccCCcccCcceEecCCeEEEEC--CCCeEEEEECCCCceeeEEEC---CCCceEcCEEEEeCCEEEEE
Confidence 1111122345566666542 57889999998876 77531 22223333334569999985
No 119
>PRK01742 tolB translocation protein TolB; Provisional
Probab=89.35 E-value=11 Score=30.92 Aligned_cols=138 Identities=12% Similarity=0.037 Sum_probs=66.2
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceee-eeEEEC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVT-AHAVVG 109 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~ 109 (202)
.+++++|+.+.+-+.+...+.... .....-+|+.++++...+ ....++.+|..+.+..++........ .....+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~----g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKD----GVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecC----CcEEEEEEECCCCCeEeeccCCCCcCCEEECCC
Confidence 358888988776665554332111 111223665444433211 12358888988887777653222111 122335
Q ss_pred CE-EEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 110 KK-LFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 110 ~~-iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
++ |+.... .....++.+|.....-+.+. . . .........+..|++.++ ..++.+|..++ .++.+
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l~-~--~--~~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g---~~~~l 368 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLVG-G--R--GYSAQISADGKTLVMING-----DNVVKQDLTSG---STEVL 368 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEec-C--C--CCCccCCCCCCEEEEEcC-----CCEEEEECCCC---CeEEe
Confidence 54 444432 12345666666555433332 1 1 111211122344544443 24677888776 66654
No 120
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.18 E-value=16 Score=32.59 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEECCEEEEEeC--C------CCCeEEEEeCCCCc--EEEe
Q 028925 105 HAVVGKKLFCMEW--K------NQRKLTIFDPEDNS--WKMV 136 (202)
Q Consensus 105 ~~~~~~~iyv~Gg--~------~~~~~~~yd~~~~~--W~~~ 136 (202)
..+.++.||+-+. . ....+..||.++.+ |+.-
T Consensus 312 P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 312 PLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred CEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 4667888776331 1 14678999998886 7764
No 121
>PRK13684 Ycf48-like protein; Provisional
Probab=88.90 E-value=10 Score=30.03 Aligned_cols=136 Identities=11% Similarity=0.150 Sum_probs=66.2
Q ss_pred eEEEeCCCCCeEEcCCCCCCceeeeeEEE-CCEEEEEcCccCCCCCCcceEEE-EeCCCCeEEeccCc-cceeeee-EEE
Q 028925 33 AEVYDPDTDKWNLIESLRRPRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDV-YNPERHTWCQMKNG-CVMVTAH-AVV 108 (202)
Q Consensus 33 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~-yd~~~~~W~~~~~~-~~~~~~~-~~~ 108 (202)
+++=+-.-++|+.+......- -..+... ++.++++|... .++. .|....+|+.+... .....++ ...
T Consensus 154 i~~S~DgG~tW~~~~~~~~g~-~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~ 224 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDAAGV-VRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP 224 (334)
T ss_pred EEEECCCCCCceeCcCCCcce-EEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCeEEEeeCCCcccceeeeEcC
Confidence 454444567899886533222 2222333 44444444321 2332 24455689988622 2222232 334
Q ss_pred CCEEEEEeCCCCCeEEEE--eCCCCcEEEeccCCCCCCCCCeeEEEE-CCeEEEEcccCCCCceeEEEeCCCCCCCccee
Q 028925 109 GKKLFCMEWKNQRKLTIF--DPEDNSWKMVPVPLTGSSSIGFRFGIL-DGKLLLFSLEEEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 109 ~~~iyv~Gg~~~~~~~~y--d~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
++.++++|. ...+ .+ +-.-.+|+.+..|.......-++++.. +++++++|.. + .++.-..... +|+.
T Consensus 225 ~g~~~~vg~--~G~~-~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~---G-~v~~S~d~G~---tW~~ 294 (334)
T PRK13684 225 DGNLWMLAR--GGQI-RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN---G-TLLVSKDGGK---TWEK 294 (334)
T ss_pred CCCEEEEec--CCEE-EEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC---C-eEEEeCCCCC---CCeE
Confidence 678888863 3333 34 234458998753322211222333333 6688888743 2 2333222233 7998
Q ss_pred ec
Q 028925 186 SK 187 (202)
Q Consensus 186 ~~ 187 (202)
+.
T Consensus 295 ~~ 296 (334)
T PRK13684 295 DP 296 (334)
T ss_pred CC
Confidence 74
No 122
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.52 E-value=8.7 Score=28.83 Aligned_cols=144 Identities=15% Similarity=0.094 Sum_probs=78.7
Q ss_pred EEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEec
Q 028925 16 KIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQM 95 (202)
Q Consensus 16 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~ 95 (202)
.+.+.|+++ .++..||..+++-+++.-+...+.....+.+.+..++.|..+ .++..||...++-..-
T Consensus 114 SVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~D-------GtvRtydiR~G~l~sD 180 (307)
T KOG0316|consen 114 SVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVD-------GTVRTYDIRKGTLSSD 180 (307)
T ss_pred eEEEecccc------ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccC-------CcEEEEEeecceeehh
Confidence 444555543 457788999998888887888888888888888888777543 3578888766542211
Q ss_pred cCccceeeee-EEECCEEEEEeCCCCCeEEEEeCCCCcEEEec-cCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEE
Q 028925 96 KNGCVMVTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVP-VPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLY 173 (202)
Q Consensus 96 ~~~~~~~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~y 173 (202)
-+.....+. ..-++.-.++| .-...+...|.++.+--..- ..... .+-.-.+..+..-.|++|.. ...++.|
T Consensus 181 -y~g~pit~vs~s~d~nc~La~-~l~stlrLlDk~tGklL~sYkGhkn~--eykldc~l~qsdthV~sgSE--DG~Vy~w 254 (307)
T KOG0316|consen 181 -YFGHPITSVSFSKDGNCSLAS-SLDSTLRLLDKETGKLLKSYKGHKNM--EYKLDCCLNQSDTHVFSGSE--DGKVYFW 254 (307)
T ss_pred -hcCCcceeEEecCCCCEEEEe-eccceeeecccchhHHHHHhcccccc--eeeeeeeecccceeEEeccC--CceEEEE
Confidence 111111222 22244444444 23456667777666532221 11111 22222334444445555432 1256777
Q ss_pred eCCCC
Q 028925 174 DPNAA 178 (202)
Q Consensus 174 d~~~~ 178 (202)
|+...
T Consensus 255 dLvd~ 259 (307)
T KOG0316|consen 255 DLVDE 259 (307)
T ss_pred Eeccc
Confidence 77553
No 123
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.33 E-value=18 Score=32.23 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=38.0
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCc--EEE-----------eccCCCCCCCCCeeEEEECCeEEEEcccC-------CCC
Q 028925 108 VGKKLFCMEWKNQRKLTIFDPEDNS--WKM-----------VPVPLTGSSSIGFRFGILDGKLLLFSLEE-------EPS 167 (202)
Q Consensus 108 ~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~-----------~~~~~~~~~~~~~~~~~~~~~i~v~gG~~-------~~~ 167 (202)
.+++||+.. ....+..+|.++.+ |.. +....+........-++.+++|++ |+.. ...
T Consensus 259 ~~~rV~~~T--~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~ 335 (764)
T TIGR03074 259 CARRIILPT--SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPS 335 (764)
T ss_pred cCCEEEEec--CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCC
Confidence 455676542 45567777776665 532 111111111123334566887777 4321 123
Q ss_pred ceeEEEeCCCCCCCccee
Q 028925 168 YSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 168 ~~~~~yd~~~~~~~~W~~ 185 (202)
..+..||.+++.. .|+.
T Consensus 336 G~I~A~Da~TGkl-~W~~ 352 (764)
T TIGR03074 336 GVIRAFDVNTGAL-VWAW 352 (764)
T ss_pred cEEEEEECCCCcE-eeEE
Confidence 4788899888632 4554
No 124
>PRK00178 tolB translocation protein TolB; Provisional
Probab=88.18 E-value=13 Score=30.35 Aligned_cols=101 Identities=13% Similarity=-0.036 Sum_probs=55.4
Q ss_pred ceEEEEeCCCCeEEeccCccceeee-eEEECC-EEEEEe-CCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCe
Q 028925 80 KFVDVYNPERHTWCQMKNGCVMVTA-HAVVGK-KLFCME-WKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGK 156 (202)
Q Consensus 80 ~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~~-~iyv~G-g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 156 (202)
..++++|..+++-+.+...+..... ....++ +|++.. ......++.+|.++...+.+.... . ..........+.+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~-~-~~~~~~~spDg~~ 300 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHP-A-IDTEPFWGKDGRT 300 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCC-C-CcCCeEECCCCCE
Confidence 4689999988877776632221111 222344 454332 122457999999999888775211 1 1111222222345
Q ss_pred EEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 157 LLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 157 i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
|+... .......++.+|..++ +++++
T Consensus 301 i~f~s-~~~g~~~iy~~d~~~g---~~~~l 326 (430)
T PRK00178 301 LYFTS-DRGGKPQIYKVNVNGG---RAERV 326 (430)
T ss_pred EEEEE-CCCCCceEEEEECCCC---CEEEe
Confidence 55443 3223347888898877 66665
No 125
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=87.80 E-value=18 Score=31.71 Aligned_cols=145 Identities=13% Similarity=0.184 Sum_probs=76.8
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEE--ECCEEEEEcCccCCCCCCcceEEEEeCCC
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS--FDGKLYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
.-++++.+.|+.+ ..+-+||..+.-.... ....-..++++. ..|+..+....+ .++..+|...
T Consensus 359 SpDgq~iaTG~eD------gKVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~g~~llssSLD-------GtVRAwDlkR 423 (893)
T KOG0291|consen 359 SPDGQLIATGAED------GKVKVWNTQSGFCFVT--FTEHTSGVTAVQFTARGNVLLSSSLD-------GTVRAWDLKR 423 (893)
T ss_pred CCCCcEEEeccCC------CcEEEEeccCceEEEE--eccCCCceEEEEEEecCCEEEEeecC-------CeEEeeeecc
Confidence 3477888887754 3477788776544322 112223333333 356655554332 3566677654
Q ss_pred CeE-Eecc-CccceeeeeEEEC--CEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCC
Q 028925 90 HTW-CQMK-NGCVMVTAHAVVG--KKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEE 165 (202)
Q Consensus 90 ~~W-~~~~-~~~~~~~~~~~~~--~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~ 165 (202)
.+- +... |.|....+ +.++ |.|.++|....-.+++++.++.+--.+= .....+-.+.++ ...+.+++-|...
T Consensus 424 YrNfRTft~P~p~Qfsc-vavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f-~~~~~~LaS~SWD- 499 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSC-VAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSF-SPDGSLLASGSWD- 499 (893)
T ss_pred cceeeeecCCCceeeeE-EEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEE-ccccCeEEecccc-
Confidence 432 2222 55444433 3344 8899999777778888898888765542 111111222222 2344555555332
Q ss_pred CCceeEEEeCCC
Q 028925 166 PSYSTLLYDPNA 177 (202)
Q Consensus 166 ~~~~~~~yd~~~ 177 (202)
..|.+||.=.
T Consensus 500 --kTVRiW~if~ 509 (893)
T KOG0291|consen 500 --KTVRIWDIFS 509 (893)
T ss_pred --ceEEEEEeec
Confidence 2567777655
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.75 E-value=8.6 Score=29.00 Aligned_cols=99 Identities=21% Similarity=0.351 Sum_probs=53.2
Q ss_pred EEEEEcCcCCCCCceeeeEEEeCCCCCeEEc----------------CCCCCCceeeeeEEECCEEEEEcCccCCCCCCc
Q 028925 16 KIYAVGGYGMDGESLSSAEVYDPDTDKWNLI----------------ESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNS 79 (202)
Q Consensus 16 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~----------------~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~ 79 (202)
+-++.||++. +-.+|.||- ++|... |....++.+.+.+..+++++++.-
T Consensus 176 krlvSgGcDn----~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~--------- 240 (299)
T KOG1332|consen 176 KRLVSGGCDN----LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK--------- 240 (299)
T ss_pred ceeeccCCcc----ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe---------
Confidence 5578888752 345666654 477432 223356666666667777776632
Q ss_pred ceEEEEeCCCCeEEecc--Ccc--ceeeeeEEECCEEEEEeCCCCCeEEEEeCCCC-cEEEec
Q 028925 80 KFVDVYNPERHTWCQMK--NGC--VMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDN-SWKMVP 137 (202)
Q Consensus 80 ~~~~~yd~~~~~W~~~~--~~~--~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~-~W~~~~ 137 (202)
+-+.++|+... +.+ ..+. +-..-+.++.++| ..+.+.++-.+.+ +|+.+.
T Consensus 241 ------~~e~e~wk~tll~~f~~~~w~v-SWS~sGn~LaVs~-GdNkvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 241 ------DEEYEPWKKTLLEEFPDVVWRV-SWSLSGNILAVSG-GDNKVTLWKENVDGKWEEVG 295 (299)
T ss_pred ------cCccCcccccccccCCcceEEE-EEeccccEEEEec-CCcEEEEEEeCCCCcEEEcc
Confidence 22334555433 222 2222 2334445555544 3556666655544 899885
No 127
>PRK04922 tolB translocation protein TolB; Provisional
Probab=86.83 E-value=16 Score=29.97 Aligned_cols=101 Identities=9% Similarity=-0.016 Sum_probs=53.1
Q ss_pred ceEEEEeCCCCeEEeccCccceeee-eEEECC-EEEEEe-CCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCe
Q 028925 80 KFVDVYNPERHTWCQMKNGCVMVTA-HAVVGK-KLFCME-WKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGK 156 (202)
Q Consensus 80 ~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~~-~iyv~G-g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 156 (202)
..++++|..+++-..+...+..... ....++ +|++.. ......++.+|.++..-+.+... .. ....... .-+++
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~-~~-~~~~~~~-spDG~ 304 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH-FG-IDTEPTW-APDGK 304 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC-CC-CccceEE-CCCCC
Confidence 4688999988876666532221111 223344 454432 22345799999998887666421 11 1112222 23444
Q ss_pred EEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 157 LLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 157 i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
-+++.........++.+|..++ +.+++
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g---~~~~l 331 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGG---SAERL 331 (433)
T ss_pred EEEEEECCCCCceEEEEECCCC---CeEEe
Confidence 3333332222346888888776 66655
No 128
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=86.80 E-value=13 Score=29.09 Aligned_cols=178 Identities=16% Similarity=0.160 Sum_probs=80.0
Q ss_pred EEEEECCEEEEEcCcC----CCCCceeeeEEEe-CCCCCeEEcCC-C----C---CCceeeeeEEECCEEEEEcCccCCC
Q 028925 9 ACAEVNGKIYAVGGYG----MDGESLSSAEVYD-PDTDKWNLIES-L----R---RPRWGCFACSFDGKLYVMGGRSSFT 75 (202)
Q Consensus 9 ~~~~~~~~iyv~GG~~----~~~~~~~~~~~yd-~~t~~W~~~~~-~----~---~~r~~~~~~~~~~~iy~~gG~~~~~ 75 (202)
+++.+++.|+++.... ........+..+. ....+|..... + . .....++.++-+++||++-|.....
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 5778899999997432 1122233344443 34557965421 1 1 1124567777899999986553321
Q ss_pred -CCCcceEEEEe--CCCCeEEeccCccce--e---------eeeEEE-CCEEEEE--e--C-CC-CCeEEEEeCC-CCcE
Q 028925 76 -IGNSKFVDVYN--PERHTWCQMKNGCVM--V---------TAHAVV-GKKLFCM--E--W-KN-QRKLTIFDPE-DNSW 133 (202)
Q Consensus 76 -~~~~~~~~~yd--~~~~~W~~~~~~~~~--~---------~~~~~~-~~~iyv~--G--g-~~-~~~~~~yd~~-~~~W 133 (202)
....-.+..+. -...+|......+.. . .+.+.. ++.|.+- + . .. .-.+.+|..+ ..+|
T Consensus 83 ~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W 162 (310)
T PF13859_consen 83 AGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTW 162 (310)
T ss_dssp -SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-
T ss_pred ccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccce
Confidence 11222333332 233468876521110 0 001122 3332221 1 0 11 1356678776 7789
Q ss_pred EEeccCCCCCCCCCeeEEEE-CCeEEEEcccCCCCceeEEEeCCCCCCCccee-ecccC
Q 028925 134 KMVPVPLTGSSSIGFRFGIL-DGKLLLFSLEEEPSYSTLLYDPNAASGSEWQT-SKIKP 190 (202)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~-~~~~p 190 (202)
.......+ ..+....++-. +++|+++.-.......|++-.-.-. +|++ ++.++
T Consensus 163 ~lskg~s~-~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~---tWtea~gtls 217 (310)
T PF13859_consen 163 KLSKGMSP-AGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGT---TWTEALGTLS 217 (310)
T ss_dssp EE-S-----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTS---S-EE-TTTTT
T ss_pred EeccccCC-CCcceEEEEeccCCeeEEEEecccceEEEEEEcccce---ehhhccCccc
Confidence 98763322 23446667777 8899998755433234554433333 7998 44443
No 129
>PRK03629 tolB translocation protein TolB; Provisional
Probab=86.37 E-value=17 Score=29.83 Aligned_cols=139 Identities=9% Similarity=-0.036 Sum_probs=72.8
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCcccee-eeeEEEC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMV-TAHAVVG 109 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~-~~~~~~~ 109 (202)
.+++++|+.+++.+.+......... ..-.-+|+.+++..... ....++.+|+.+.+-+++....... ......+
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~-~~wSPDG~~I~f~s~~~----g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTE-PTWFPDSQNLAYTSDQA----GRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCc-eEECCCCCEEEEEeCCC----CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 3589999998887776543221111 11123565444432211 1246888888877666664221111 1222334
Q ss_pred CE-EEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 110 KK-LFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 110 ~~-iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
++ |+.... .....++.+|++++.++.+.... . ..... ..-||+.+++.........++..+.+..
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~--~~~p~-~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-L--DETPS-IAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-C--CCCce-ECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 54 444432 12356888999999988876221 1 11222 2356766666554433345666676543
No 130
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.16 E-value=11 Score=27.47 Aligned_cols=145 Identities=15% Similarity=0.169 Sum_probs=65.5
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEE
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC 93 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~ 93 (202)
+++++++|+.+ ..+.+||..+++-...-.............-+++.++.++. ...+.+||..+.+-.
T Consensus 20 ~~~~l~~~~~~------g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~i~i~~~~~~~~~ 86 (289)
T cd00200 20 DGKLLATGSGD------GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-------DKTIRLWDLETGECV 86 (289)
T ss_pred CCCEEEEeecC------cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-------CCeEEEEEcCcccce
Confidence 44666666542 35777787765421111111111111111224445555553 246888888764322
Q ss_pred e-ccCccceeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEEC-CeEEEEcccCCCCcee
Q 028925 94 Q-MKNGCVMVTAHAVV-GKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILD-GKLLLFSLEEEPSYST 170 (202)
Q Consensus 94 ~-~~~~~~~~~~~~~~-~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~i~v~gG~~~~~~~~ 170 (202)
. +............. ++.+++.++ ..+.+..||..+.+-...-. .. ...-..+.... +++++.+. ....+
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~--~~-~~~i~~~~~~~~~~~l~~~~---~~~~i 159 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS-RDKTIKVWDVETGKCLTTLR--GH-TDWVNSVAFSPDGTFVASSS---QDGTI 159 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEec-CCCeEEEEECCCcEEEEEec--cC-CCcEEEEEEcCcCCEEEEEc---CCCcE
Confidence 1 11111112222222 345555553 57889999988554333211 11 11122233333 45555443 12257
Q ss_pred EEEeCCCC
Q 028925 171 LLYDPNAA 178 (202)
Q Consensus 171 ~~yd~~~~ 178 (202)
.+||..+.
T Consensus 160 ~i~d~~~~ 167 (289)
T cd00200 160 KLWDLRTG 167 (289)
T ss_pred EEEEcccc
Confidence 77877643
No 131
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=86.11 E-value=13 Score=28.34 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=51.6
Q ss_pred ceEEEEECCEEEEEcCcCCC--CCceeeeEEEeC----CCCCeE-EcC-CCCCCceeeeeEEECCEEEEEcCccCCCCCC
Q 028925 7 DFACAEVNGKIYAVGGYGMD--GESLSSAEVYDP----DTDKWN-LIE-SLRRPRWGCFACSFDGKLYVMGGRSSFTIGN 78 (202)
Q Consensus 7 ~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~yd~----~t~~W~-~~~-~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~ 78 (202)
-|+.+.+++.-|.+|=.+.+ ...+. +..|.. ....-+ .++ .+...-..+.+-.++|.||+..-....+ ..
T Consensus 138 ~HSFa~i~~~~fA~GyHnGD~sPRe~G-~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~-~~ 215 (367)
T PF12217_consen 138 LHSFATIDDNQFAVGYHNGDVSPRELG-FLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPT-NP 215 (367)
T ss_dssp EEEEEE-SSS-EEEEEEE-SSSS-EEE-EEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TT-S-
T ss_pred eeeeeEecCCceeEEeccCCCCcceee-EEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCC-CC
Confidence 47778888888888733211 22232 222321 111112 222 1222223334445899999985322111 12
Q ss_pred cceEEEEeCCCCeEEecc-Cccceeee--eEEECCEEEEEeC
Q 028925 79 SKFVDVYNPERHTWCQMK-NGCVMVTA--HAVVGKKLFCMEW 117 (202)
Q Consensus 79 ~~~~~~yd~~~~~W~~~~-~~~~~~~~--~~~~~~~iyv~Gg 117 (202)
-..+.+.+.....|+.+. |....+.. ....++.||++|.
T Consensus 216 GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 216 GSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp --EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred cceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 345777777788899887 43333222 3567999999983
No 132
>PRK04043 tolB translocation protein TolB; Provisional
Probab=84.79 E-value=20 Score=29.35 Aligned_cols=136 Identities=12% Similarity=0.036 Sum_probs=76.7
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECC-EEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEEC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDG-KLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVG 109 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 109 (202)
.++|.+|+.+++++++...+..-.... -.-+| +|+...... ....++++|..+.+.+++........ ....+
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~~p~-~SPDG~~I~F~Sdr~-----g~~~Iy~~dl~~g~~~rlt~~g~~~~-~~SPD 329 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDVNGN-FVEDDKRIVFVSDRL-----GYPNIFMKKLNSGSVEQVVFHGKNNS-SVSTY 329 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccCccE-ECCCCCEEEEEECCC-----CCceEEEEECCCCCeEeCccCCCcCc-eECCC
Confidence 579999999999988865433111111 22344 577665432 23579999999888877763222222 23334
Q ss_pred CE-EEEEeCC-------CCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCe-EEEEcccCCCCceeEEEeCCCC
Q 028925 110 KK-LFCMEWK-------NQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGK-LLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 110 ~~-iyv~Gg~-------~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
++ |...... ....++.+|+++..++.+... . ....... .-||+ |+... .......+..++...+
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~--~-~~~~p~~-SPDG~~I~f~~-~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN--G-VNQFPRF-SSDGGSIMFIK-YLGNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--C-CcCCeEE-CCCCCEEEEEE-ccCCcEEEEEEecCCC
Confidence 44 4333321 125788999999999888632 1 1222332 33554 44443 2233346778888765
No 133
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=84.66 E-value=20 Score=29.28 Aligned_cols=113 Identities=12% Similarity=0.183 Sum_probs=61.6
Q ss_pred eEEEEE-CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEE--CCEEEEEcCccCCCCCCcceEEE
Q 028925 8 FACAEV-NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSF--DGKLYVMGGRSSFTIGNSKFVDV 84 (202)
Q Consensus 8 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iy~~gG~~~~~~~~~~~~~~ 84 (202)
.+++.+ ++-|+..|-.+ ..+-+||+++.. .++..|..-.--.+..+ ||+-.+.+- + ...+.+
T Consensus 351 ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~a-d------d~~V~l 415 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAA-D------DGSVKL 415 (506)
T ss_pred EEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEe-c------CCeEEE
Confidence 344444 56666665432 357788998776 55555542222233334 555444432 2 234888
Q ss_pred EeCCCCe-EEecc-CccceeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEEEec
Q 028925 85 YNPERHT-WCQMK-NGCVMVTAHAVV--GKKLFCMEWKNQRKLTIFDPEDNSWKMVP 137 (202)
Q Consensus 85 yd~~~~~-W~~~~-~~~~~~~~~~~~--~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~ 137 (202)
||....+ ...++ +... ......+ -|...+++| +.-.++.|+.++..|+.+.
T Consensus 416 wDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred EEehhhcccceeeccccc-cceeEEEcCCCCeEEeec-ceeEEEEEecccccceeee
Confidence 9886554 11111 1111 1222333 344555554 5667888999999999997
No 134
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.48 E-value=18 Score=28.59 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=72.3
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC-CCce-eeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR-RPRW-GCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERH 90 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~-~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~ 90 (202)
++.||+..... .....-..+..+..+.+.+.+...+ .... +|.+..-+++ ||+.. +. ...+.+|+...+
T Consensus 48 ~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~------~g~v~v~~l~~~ 119 (345)
T PF10282_consen 48 GRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG------GGSVSVFPLDDD 119 (345)
T ss_dssp SSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT------TTEEEEEEECTT
T ss_pred CCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc------CCeEEEEEccCC
Confidence 56888885432 1122233555666556777665443 2332 2222222444 55542 21 234666665543
Q ss_pred -eEEecc---------C------ccceeeeeEEEC-CEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEE
Q 028925 91 -TWCQMK---------N------GCVMVTAHAVVG-KKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFG 151 (202)
Q Consensus 91 -~W~~~~---------~------~~~~~~~~~~~~-~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~ 151 (202)
+-.... + .+..+......+ ..+|+..- ....++.|+.+..+ .........+....--.++
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 222211 1 111122222223 45777752 35788888877665 6553311111112222344
Q ss_pred EE--CCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 152 IL--DGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 152 ~~--~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
.. +..+||+.- ....-.++.|+.+++ .++.+
T Consensus 199 f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g---~~~~~ 231 (345)
T PF10282_consen 199 FSPDGKYAYVVNE-LSNTVSVFDYDPSDG---SLTEI 231 (345)
T ss_dssp E-TTSSEEEEEET-TTTEEEEEEEETTTT---EEEEE
T ss_pred EcCCcCEEEEecC-CCCcEEEEeecccCC---ceeEE
Confidence 43 357888762 222224445554465 56555
No 135
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=83.49 E-value=20 Score=30.48 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=54.7
Q ss_pred CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcE-EEecc
Q 028925 62 DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVV--GKKLFCMEWKNQRKLTIFDPEDNSW-KMVPV 138 (202)
Q Consensus 62 ~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~iyv~Gg~~~~~~~~yd~~~~~W-~~~~~ 138 (202)
.-.||+.|. ..+++++|.+.++|-.--.......-++.+ ...|+.+|+ ..+.|+.+|+.+..- ..+..
T Consensus 145 scDly~~gs--------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt-~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 145 SCDLYLVGS--------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT-EDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred CccEEEeec--------CcceEEEEccccccccccccccccceeeeecCccceEEecc-cCceEEEecchhhhhheeeec
Confidence 445776652 346999999999886532111111112222 235667775 678999999866542 22221
Q ss_pred ----CCCCCC---CCCeeEEEECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 139 ----PLTGSS---SIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 139 ----~~~~~~---~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
+..+.. ..-.++..-|+-|.+-=| .....+++||+.+.
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVG--ts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVG--TSTGSVLIYDLRAS 260 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEee--ccCCcEEEEEcccC
Confidence 111111 111222233545555222 33447888988764
No 136
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=83.48 E-value=20 Score=28.15 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=38.1
Q ss_pred CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeee---E--EECCEEEEEeCCCCCeEEEEeCCCCcE
Q 028925 62 DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAH---A--VVGKKLFCMEWKNQRKLTIFDPEDNSW 133 (202)
Q Consensus 62 ~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~---~--~~~~~iyv~Gg~~~~~~~~yd~~~~~W 133 (202)
.|.+.++|- ....+..||..|-+.-.-..+...+..+ + ...++||+.|. ..+.+-++|=..++-
T Consensus 227 sGefllvgT-------dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-kDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 227 SGEFLLVGT-------DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS-KDGAIKLWDGVSNRC 295 (430)
T ss_pred CCceEEEec-------CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec-cCCcEEeeccccHHH
Confidence 567777764 2346888998887755433222222111 1 22678999874 567778877655553
No 137
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=83.48 E-value=19 Score=28.09 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=72.6
Q ss_pred eEEEEE-CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCC-CCCC-ceeee-eEEECCEEEEEcCccCCCCCCcceEE
Q 028925 8 FACAEV-NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIES-LRRP-RWGCF-ACSFDGKLYVMGGRSSFTIGNSKFVD 83 (202)
Q Consensus 8 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~-r~~~~-~~~~~~~iy~~gG~~~~~~~~~~~~~ 83 (202)
..+... .++-|++|-.. .+++=+=.-++|+.... ...+ ..... +...+++.|++|.. ..++
T Consensus 20 ~dV~F~d~~~G~~VG~~g-------~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~--------g~ll 84 (302)
T PF14870_consen 20 LDVAFVDPNHGWAVGAYG-------TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP--------GLLL 84 (302)
T ss_dssp EEEEESSSS-EEEEETTT-------EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET--------TEEE
T ss_pred EEEEEecCCEEEEEecCC-------EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC--------ceEE
Confidence 344444 46888887431 23333334578988753 2222 22222 23357788888631 1344
Q ss_pred EEeCCCCeEEecc-C--ccceeee-eEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEE-EECCeEE
Q 028925 84 VYNPERHTWCQMK-N--GCVMVTA-HAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFG-ILDGKLL 158 (202)
Q Consensus 84 ~yd~~~~~W~~~~-~--~~~~~~~-~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~ 158 (202)
.-.-.-.+|++++ + .+..... ...-++.+++++ ....++.-.-.-.+|+.+...... .-..+. ..+++++
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~--~~G~iy~T~DgG~tW~~~~~~~~g---s~~~~~r~~dG~~v 159 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG--DRGAIYRTTDGGKTWQAVVSETSG---SINDITRSSDGRYV 159 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE--TT--EEEESSTTSSEEEEE-S-------EEEEEE-TTS-EE
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc--CCCcEEEeCCCCCCeeEcccCCcc---eeEeEEECCCCcEE
Confidence 4444577999986 2 2222222 344567777776 457777777778899998633222 112222 3467777
Q ss_pred EEcccCCCCceeEEEeCCCCCCCcceeeccc
Q 028925 159 LFSLEEEPSYSTLLYDPNAASGSEWQTSKIK 189 (202)
Q Consensus 159 v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~~ 189 (202)
+++ ..+.-....|+... .|+.....
T Consensus 160 avs---~~G~~~~s~~~G~~---~w~~~~r~ 184 (302)
T PF14870_consen 160 AVS---SRGNFYSSWDPGQT---TWQPHNRN 184 (302)
T ss_dssp EEE---TTSSEEEEE-TT-S---S-EEEE--
T ss_pred EEE---CcccEEEEecCCCc---cceEEccC
Confidence 676 23334456788776 78877444
No 138
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.25 E-value=19 Score=27.82 Aligned_cols=139 Identities=15% Similarity=0.127 Sum_probs=77.3
Q ss_pred eeEEEeCCCCCeEEcCCCCCCc--eeeeeEEE--CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-Cccceeee-e
Q 028925 32 SAEVYDPDTDKWNLIESLRRPR--WGCFACSF--DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NGCVMVTA-H 105 (202)
Q Consensus 32 ~~~~yd~~t~~W~~~~~~~~~r--~~~~~~~~--~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~-~ 105 (202)
.+-++|+++.+-++.+ +|..+ .+.-..++ .|.++..|-..- .-+.||.++.-+..+ |......+ +
T Consensus 125 aI~R~dpkt~evt~f~-lp~~~a~~nlet~vfD~~G~lWFt~q~G~--------yGrLdPa~~~i~vfpaPqG~gpyGi~ 195 (353)
T COG4257 125 AIGRLDPKTLEVTRFP-LPLEHADANLETAVFDPWGNLWFTGQIGA--------YGRLDPARNVISVFPAPQGGGPYGIC 195 (353)
T ss_pred eeEEecCcccceEEee-cccccCCCcccceeeCCCccEEEeecccc--------ceecCcccCceeeeccCCCCCCcceE
Confidence 5778888888877664 33333 33334455 456777654321 114566665544443 22122222 3
Q ss_pred EEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCccee
Q 028925 106 AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 106 ~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
+..++.+|...- .-+.+-..|+.+..=+.++.|........-.-+.--+++.+.- .....+++|||.+. +|.+
T Consensus 196 atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt---wg~g~l~rfdPs~~---sW~e 268 (353)
T COG4257 196 ATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT---WGTGSLHRFDPSVT---SWIE 268 (353)
T ss_pred ECCCCcEEEEec-cccceEEcccccCCcceecCCCcccccccccccCccCcEEEec---cCCceeeEeCcccc---ccee
Confidence 445888887631 3467788899888777775332211111111223347777762 22347999999998 6666
Q ss_pred e
Q 028925 186 S 186 (202)
Q Consensus 186 ~ 186 (202)
-
T Consensus 269 y 269 (353)
T COG4257 269 Y 269 (353)
T ss_pred e
Confidence 4
No 139
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=83.20 E-value=16 Score=28.23 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=64.4
Q ss_pred EEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEE-ECCEEEEEcCccCCCCCCcceEEEEeC
Q 028925 9 ACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS-FDGKLYVMGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 9 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iy~~gG~~~~~~~~~~~~~~yd~ 87 (202)
+....+.+.+++|+.. .+..=|-.-++|++.-. +..|..+..+. ++.+=++.|- ...++.-+-
T Consensus 49 a~~~~g~~gwlVg~rg-------tiletdd~g~tw~qal~-~~gr~~f~sv~f~~~egw~vGe--------~sqll~T~D 112 (339)
T COG4447 49 AFTESGSHGWLVGGRG-------TILETDDGGITWAQALD-FLGRHAFHSVSFLGMEGWIVGE--------PSQLLHTTD 112 (339)
T ss_pred eEeecCcceEEEcCcc-------eEEEecCCcccchhhhc-hhhhhheeeeeeecccccccCC--------cceEEEecC
Confidence 3445577999999863 24444566788987754 23354444443 4555666652 234566666
Q ss_pred CCCeEEecc-C--ccceeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEEec
Q 028925 88 ERHTWCQMK-N--GCVMVTAHAVV-GKKLFCMEWKNQRKLTIFDPEDNSWKMVP 137 (202)
Q Consensus 88 ~~~~W~~~~-~--~~~~~~~~~~~-~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~ 137 (202)
.-.+|.+++ . .+-...+.... +..-|++| ....++.-+-...+|+.+.
T Consensus 113 gGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~g--d~Gail~T~DgGk~Wk~l~ 164 (339)
T COG4447 113 GGQSWARIPLSEKLEGFPDSITFLDDQRGEMLG--DQGAILKTTDGGKNWKALV 164 (339)
T ss_pred CCcchhhchhhcCCCCCcceeEEecchhhhhhc--ccceEEEecCCcccHhHhc
Confidence 678899998 1 11122223333 44455555 3556666666677899985
No 140
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.82 E-value=33 Score=30.26 Aligned_cols=135 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred eeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-Cccceeeee-EE
Q 028925 30 LSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NGCVMVTAH-AV 107 (202)
Q Consensus 30 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~-~~ 107 (202)
+.++.+|+-++.+.-....-...|....+..-+|.+.+.|+.+ ..+.+||..+.-...-- .......+. ..
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eD-------gKVKvWn~~SgfC~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAED-------GKVKVWNTQSGFCFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCC-------CcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence 4456666655444332222223444444444588888888754 45888887665432221 222222222 22
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCc-EEEeccCCCCCCCCCeeEEEEC--CeEEEEcccCCCCceeEEEeCCCC
Q 028925 108 VGKKLFCMEWKNQRKLTIFDPEDNS-WKMVPVPLTGSSSIGFRFGILD--GKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 108 ~~~~iyv~Gg~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~--~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
..++..+.- +-.+.|..+|.+.-+ .+....|. +..++.+..| |.|.+.|... ...+++|+.+|+
T Consensus 402 ~~g~~llss-SLDGtVRAwDlkRYrNfRTft~P~----p~QfscvavD~sGelV~AG~~d--~F~IfvWS~qTG 468 (893)
T KOG0291|consen 402 ARGNVLLSS-SLDGTVRAWDLKRYRNFRTFTSPE----PIQFSCVAVDPSGELVCAGAQD--SFEIFVWSVQTG 468 (893)
T ss_pred ecCCEEEEe-ecCCeEEeeeecccceeeeecCCC----ceeeeEEEEcCCCCEEEeeccc--eEEEEEEEeecC
Confidence 244444432 235678888876554 34443221 2233444444 8888887643 224555555554
No 141
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.50 E-value=24 Score=30.73 Aligned_cols=106 Identities=18% Similarity=0.079 Sum_probs=55.4
Q ss_pred ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccC
Q 028925 61 FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVP 139 (202)
Q Consensus 61 ~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~ 139 (202)
+.+.-|+++|.. ..++..+|..++.=.++- .......+..+.-...|+.-|...+.+-+||..+..-... .
T Consensus 544 HPNs~Y~aTGSs------D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~--l 615 (707)
T KOG0263|consen 544 HPNSNYVATGSS------DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ--L 615 (707)
T ss_pred CCcccccccCCC------CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh--h
Confidence 355566665532 345666776665544433 2222223333333444555555788899999876542221 1
Q ss_pred CCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCC
Q 028925 140 LTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
.........--...+|.|++.||.. .++..||...
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~D---nsV~lWD~~~ 650 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGAD---NSVRLWDLTK 650 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCC---CeEEEEEchh
Confidence 1111122222224689999998643 3677777654
No 142
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=81.28 E-value=30 Score=28.81 Aligned_cols=134 Identities=16% Similarity=0.129 Sum_probs=68.1
Q ss_pred eeeEEEeCCCCCeEEcC-CCCCCcee--ee----------eEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccC
Q 028925 31 SSAEVYDPDTDKWNLIE-SLRRPRWG--CF----------ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKN 97 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~-~~~~~r~~--~~----------~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 97 (202)
.++|.|||.+.+-+++. .||..|.. .. -+..+|..+.+=. .....+.++..+-=-+++.
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS--------RGkaFi~~~~~~~~iqv~~ 358 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS--------RGKAFIMRPWDGYSIQVGK 358 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe--------cCcEEEECCCCCeeEEcCC
Confidence 57899999999987763 23333211 00 1223444333211 1224444443332222332
Q ss_pred ccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCC
Q 028925 98 GCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 98 ~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
..+-.-.....++.-.++|-..-..+.+||..+..-.+.. +... +-....+.-+|+-.+++ .+...+|.+|+++
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-~~lg--~I~av~vs~dGK~~vva---Ndr~el~vididn 432 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-KDLG--NIEAVKVSPDGKKVVVA---NDRFELWVIDIDN 432 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-CCcc--ceEEEEEcCCCcEEEEE---cCceEEEEEEecC
Confidence 2222222233344456666545568899999988877765 2222 33333334466655554 2234678888887
Q ss_pred C
Q 028925 178 A 178 (202)
Q Consensus 178 ~ 178 (202)
+
T Consensus 433 g 433 (668)
T COG4946 433 G 433 (668)
T ss_pred C
Confidence 6
No 143
>PRK10115 protease 2; Provisional
Probab=80.32 E-value=41 Score=29.66 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=77.3
Q ss_pred eeeEEEeC--CCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCC-CCeEEeccCc-c-ceeeee
Q 028925 31 SSAEVYDP--DTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPE-RHTWCQMKNG-C-VMVTAH 105 (202)
Q Consensus 31 ~~~~~yd~--~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~-~~~W~~~~~~-~-~~~~~~ 105 (202)
+.++.|+. .+.+|..+-+.+....+ .....++.+|+..-... ....+...+.. +.+|+.+-+. . ......
T Consensus 247 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ly~~tn~~~----~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~ 321 (686)
T PRK10115 247 SEVLLLDAELADAEPFVFLPRRKDHEY-SLDHYQHRFYLRSNRHG----KNFGLYRTRVRDEQQWEELIPPRENIMLEGF 321 (686)
T ss_pred ccEEEEECcCCCCCceEEEECCCCCEE-EEEeCCCEEEEEEcCCC----CCceEEEecCCCcccCeEEECCCCCCEEEEE
Confidence 45677773 33454433333322222 22345678888753321 23346666665 5789888744 2 233445
Q ss_pred EEECCEEEEEeC-CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEE---E-CCeEEE-EcccCCCCceeEEEeCCCCC
Q 028925 106 AVVGKKLFCMEW-KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGI---L-DGKLLL-FSLEEEPSYSTLLYDPNAAS 179 (202)
Q Consensus 106 ~~~~~~iyv~Gg-~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~---~-~~~i~v-~gG~~~~~~~~~~yd~~~~~ 179 (202)
...++.|++..- .....++.+|..+.....+..+. + ........ . ++.+++ +.+...+ ..++.||++++
T Consensus 322 ~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~ss~~~P-~~~y~~d~~~~- 396 (686)
T PRK10115 322 TLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDD-P--AYVTWIAYNPEPETSRLRYGYSSMTTP-DTLFELDMDTG- 396 (686)
T ss_pred EEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCC-C--ceEeeecccCCCCCceEEEEEecCCCC-CEEEEEECCCC-
Confidence 556777777642 23456888887766666553111 1 11111111 1 244544 3333333 48999999998
Q ss_pred CCcceeec
Q 028925 180 GSEWQTSK 187 (202)
Q Consensus 180 ~~~W~~~~ 187 (202)
+|+.+.
T Consensus 397 --~~~~l~ 402 (686)
T PRK10115 397 --ERRVLK 402 (686)
T ss_pred --cEEEEE
Confidence 888774
No 144
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=80.08 E-value=33 Score=28.41 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=62.0
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEE-C-CEEEEEcCccCCCCCCcceEEEEeCCC
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSF-D-GKLYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
-.+++|.+-||++ ..+-.||..+.+ ..+-.+....---.++.+ + ..|...||. .+-++|..+
T Consensus 163 ~~~~hivvtGsYD------g~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn---------~vkVWDl~~ 226 (487)
T KOG0310|consen 163 PANDHIVVTGSYD------GKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGN---------SVKVWDLTT 226 (487)
T ss_pred cCCCeEEEecCCC------ceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCC---------eEEEEEecC
Confidence 3467899999986 346778888774 223222221111122233 3 445555663 477888764
Q ss_pred CeEEecc---CccceeeeeEEEC--CEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEccc
Q 028925 90 HTWCQMK---NGCVMVTAHAVVG--KKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLE 163 (202)
Q Consensus 90 ~~W~~~~---~~~~~~~~~~~~~--~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~ 163 (202)
+. +.+. .......+..... .+++ .|| -...+-+|| +..|+.+-....+.+--. ..+..|++..++|..
T Consensus 227 G~-qll~~~~~H~KtVTcL~l~s~~~rLl-S~s-LD~~VKVfd--~t~~Kvv~s~~~~~pvLs-iavs~dd~t~viGms 299 (487)
T KOG0310|consen 227 GG-QLLTSMFNHNKTVTCLRLASDSTRLL-SGS-LDRHVKVFD--TTNYKVVHSWKYPGPVLS-IAVSPDDQTVVIGMS 299 (487)
T ss_pred Cc-eehhhhhcccceEEEEEeecCCceEe-ecc-cccceEEEE--ccceEEEEeeecccceee-EEecCCCceEEEecc
Confidence 43 1121 1222223333332 3444 333 567788898 344555432111111111 122346677777653
No 145
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=79.93 E-value=6.3 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=17.5
Q ss_pred eeeEEECCEEEEEeCCCCCeEEEEeCCC
Q 028925 103 TAHAVVGKKLFCMEWKNQRKLTIFDPED 130 (202)
Q Consensus 103 ~~~~~~~~~iyv~Gg~~~~~~~~yd~~~ 130 (202)
.+.++.++.+|+.+ ....++++|+++
T Consensus 15 ~~~~v~~g~vyv~~--~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGT--GDGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE---TTSEEEEEETT-
T ss_pred cCCEEECCEEEEEc--CCCEEEEEeCCC
Confidence 33466788888875 478899999864
No 146
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=79.32 E-value=15 Score=29.23 Aligned_cols=88 Identities=14% Similarity=0.228 Sum_probs=52.9
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEECC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGK 110 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 110 (202)
..+-++|..|.+ .+..+...+.+-++..++|++.+.|.. ..++..||.+.+..-++-..-...-...-+++
T Consensus 340 RTikvW~~st~e--fvRtl~gHkRGIAClQYr~rlvVSGSS-------DntIRlwdi~~G~cLRvLeGHEeLvRciRFd~ 410 (499)
T KOG0281|consen 340 RTIKVWSTSTCE--FVRTLNGHKRGIACLQYRDRLVVSGSS-------DNTIRLWDIECGACLRVLEGHEELVRCIRFDN 410 (499)
T ss_pred ceEEEEecccee--eehhhhcccccceehhccCeEEEecCC-------CceEEEEeccccHHHHHHhchHHhhhheeecC
Confidence 346677776544 344455556666667799999887653 34688888877765444321111122456677
Q ss_pred EEEEEeCCCCCeEEEEeC
Q 028925 111 KLFCMEWKNQRKLTIFDP 128 (202)
Q Consensus 111 ~iyv~Gg~~~~~~~~yd~ 128 (202)
+-.|-|+ ..+++-++|.
T Consensus 411 krIVSGa-YDGkikvWdl 427 (499)
T KOG0281|consen 411 KRIVSGA-YDGKIKVWDL 427 (499)
T ss_pred ceeeecc-ccceEEEEec
Confidence 7666665 5666666554
No 147
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=79.02 E-value=26 Score=26.59 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=83.1
Q ss_pred ECCEEEEEcCcCCCCCceeeeEEEeC-----CCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeC
Q 028925 13 VNGKIYAVGGYGMDGESLSSAEVYDP-----DTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 13 ~~~~iyv~GG~~~~~~~~~~~~~yd~-----~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~ 87 (202)
.+++||++.+.... .++.|.- ..+...+.-.||.+-.+..-++++|.+|.--. ....+..||.
T Consensus 29 ~~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-------~s~~IvkydL 96 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-------NSRNIVKYDL 96 (250)
T ss_pred CCCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-------CCceEEEEEC
Confidence 35688888775422 3444422 23333333345666666677788999887532 3567999999
Q ss_pred CCCeEE---eccCccc-----ee------eeeEEECCEEEEEeC---CC-CCeEEEEeCCCC----cEEEeccCCCCCCC
Q 028925 88 ERHTWC---QMKNGCV-----MV------TAHAVVGKKLFCMEW---KN-QRKLTIFDPEDN----SWKMVPVPLTGSSS 145 (202)
Q Consensus 88 ~~~~W~---~~~~~~~-----~~------~~~~~~~~~iyv~Gg---~~-~~~~~~yd~~~~----~W~~~~~~~~~~~~ 145 (202)
.+++-. .++.... .. .-.++.+..|+++=. .. .-.+-..|+++- +|..-- + .+
T Consensus 97 ~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~-~----k~ 171 (250)
T PF02191_consen 97 TTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSY-P----KR 171 (250)
T ss_pred cCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEecc-C----ch
Confidence 988644 4441111 11 112334555666622 11 234556677544 465431 1 12
Q ss_pred CCeeEEEECCeEEEEcccCCC-CceeEEEeCCCC
Q 028925 146 IGFRFGILDGKLLLFSLEEEP-SYSTLLYDPNAA 178 (202)
Q Consensus 146 ~~~~~~~~~~~i~v~gG~~~~-~~~~~~yd~~~~ 178 (202)
....+.++=|.||++...... ..-.+.||..++
T Consensus 172 ~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~ 205 (250)
T PF02191_consen 172 SAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTG 205 (250)
T ss_pred hhcceeeEeeEEEEEEECCCCCcEEEEEEECCCC
Confidence 223344667899998866544 346788999886
No 148
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=78.80 E-value=57 Score=30.45 Aligned_cols=148 Identities=13% Similarity=0.030 Sum_probs=78.9
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCC----------CCCc-eeeeeEEE---CCEEEEEcCccCCCCCCc
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESL----------RRPR-WGCFACSF---DGKLYVMGGRSSFTIGNS 79 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~----------~~~r-~~~~~~~~---~~~iy~~gG~~~~~~~~~ 79 (202)
++.|||.--. .+.+.++|+..+.=..+... ...+ ..+....+ ++.||+.... .
T Consensus 579 ~g~lyVaDs~------n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~-------n 645 (1057)
T PLN02919 579 NNRLFISDSN------HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE-------N 645 (1057)
T ss_pred CCeEEEEECC------CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC-------C
Confidence 6789998421 24688899865432222210 0111 11222333 4568886432 2
Q ss_pred ceEEEEeCCCCeEEeccCc-----------------cceeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEEEeccCC
Q 028925 80 KFVDVYNPERHTWCQMKNG-----------------CVMVTAHAVV--GKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPL 140 (202)
Q Consensus 80 ~~~~~yd~~~~~W~~~~~~-----------------~~~~~~~~~~--~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~ 140 (202)
..+.++|+.++.-+.+... -......++. ++.||+... ..+.++.||+.+..........
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-~~~~I~v~d~~~g~v~~~~G~G 724 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-GQHQIWEYNISDGVTRVFSGDG 724 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-CCCeEEEEECCCCeEEEEecCC
Confidence 3578888877765544210 0011222222 678998864 5678999999887665443110
Q ss_pred -----------CCCCCCCeeEEEE--CCeEEEEcccCCCCceeEEEeCCCC
Q 028925 141 -----------TGSSSIGFRFGIL--DGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 141 -----------~~~~~~~~~~~~~--~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
........+++.. ++.|||.... ...+.+||++++
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~---n~~Irv~D~~tg 772 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE---SSSIRALDLKTG 772 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECC---CCeEEEEECCCC
Confidence 0001112233332 4569987643 347999998875
No 149
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.74 E-value=34 Score=27.90 Aligned_cols=129 Identities=10% Similarity=0.189 Sum_probs=67.0
Q ss_pred CCCCeEEcCCCCCCceeeeeEEE----CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-Cc----cc--eeeeeEE
Q 028925 39 DTDKWNLIESLRRPRWGCFACSF----DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NG----CV--MVTAHAV 107 (202)
Q Consensus 39 ~t~~W~~~~~~~~~r~~~~~~~~----~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~----~~--~~~~~~~ 107 (202)
.-++|+.+.....+-.....+.+ +...+++|-.. .+..-+-.-++|++.. +. .. ....+..
T Consensus 73 ~G~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G--------~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f 144 (398)
T PLN00033 73 QSSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQ--------TLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISF 144 (398)
T ss_pred CCCccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCC--------EEEEEcCCCCCceECccCcccccccccceeeeEE
Confidence 34579988533333112223333 24688887421 2333333456888854 11 11 1233445
Q ss_pred ECCEEEEEeCCCCCeEEEEeCCCCcEEEeccC-CCCCCCCCeeEEEE-CCeEEEEcccCCCCceeEEEeCCCCCCCccee
Q 028925 108 VGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVP-LTGSSSIGFRFGIL-DGKLLLFSLEEEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 108 ~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~-~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
.++..+++| ....+..=+-.-.+|+.+..+ ..+ .....+... ++.+++++. .+ .+++-+-... +|+.
T Consensus 145 ~~~~g~~vG--~~G~il~T~DgG~tW~~~~~~~~~p--~~~~~i~~~~~~~~~ivg~---~G-~v~~S~D~G~---tW~~ 213 (398)
T PLN00033 145 KGKEGWIIG--KPAILLHTSDGGETWERIPLSPKLP--GEPVLIKATGPKSAEMVTD---EG-AIYVTSNAGR---NWKA 213 (398)
T ss_pred ECCEEEEEc--CceEEEEEcCCCCCceECccccCCC--CCceEEEEECCCceEEEec---cc-eEEEECCCCC---CceE
Confidence 577888886 344555555567889998632 112 122333344 456777772 22 3444444444 7998
Q ss_pred e
Q 028925 186 S 186 (202)
Q Consensus 186 ~ 186 (202)
+
T Consensus 214 ~ 214 (398)
T PLN00033 214 A 214 (398)
T ss_pred c
Confidence 6
No 150
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=78.53 E-value=29 Score=27.00 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=38.5
Q ss_pred CEEEEEeCCCCCeEEEEeC--CCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceeec
Q 028925 110 KKLFCMEWKNQRKLTIFDP--EDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSK 187 (202)
Q Consensus 110 ~~iyv~Gg~~~~~~~~yd~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~ 187 (202)
..+|+.. ...+.+.+|+. +...++.+..-.....-....+...+..||+.+. ......++..|.+++ .+..+.
T Consensus 240 ~~lyv~~-~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~~~~g---~l~~~~ 314 (330)
T PRK11028 240 RHLYACD-RTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-KSHHISVYEIDGETG---LLTELG 314 (330)
T ss_pred CEEEEec-CCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc-cCCcEEEEEEcCCCC---cEEEcc
Confidence 3577763 23566766665 4445555442111111112222233556776542 222334555566676 777765
Q ss_pred ccCCcee
Q 028925 188 IKPSGLC 194 (202)
Q Consensus 188 ~~p~~~~ 194 (202)
..+.+..
T Consensus 315 ~~~~g~~ 321 (330)
T PRK11028 315 RYAVGQG 321 (330)
T ss_pred ccccCCC
Confidence 5544444
No 151
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.76 E-value=34 Score=26.75 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=76.3
Q ss_pred ceEEEEECCEEEEEcCcCC---------CCC-------ceeeeEEEeCCCCCeEEc--CCCCCCceeeeeE---E---EC
Q 028925 7 DFACAEVNGKIYAVGGYGM---------DGE-------SLSSAEVYDPDTDKWNLI--ESLRRPRWGCFAC---S---FD 62 (202)
Q Consensus 7 ~~~~~~~~~~iyv~GG~~~---------~~~-------~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~---~---~~ 62 (202)
+.++..+++.||. ||.-- +.. -.+.+..||..+++-+.+ .....+...+.=+ . ++
T Consensus 39 YNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~ 117 (339)
T PF09910_consen 39 YNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYE 117 (339)
T ss_pred ceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCc
Confidence 4566677888886 44310 100 126789999998884332 1122223222211 1 47
Q ss_pred CEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEECCEEEEEe--CCCCCeEEEEeCCCCcE--EEecc
Q 028925 63 GKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLFCME--WKNQRKLTIFDPEDNSW--KMVPV 138 (202)
Q Consensus 63 ~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~iyv~G--g~~~~~~~~yd~~~~~W--~~~~~ 138 (202)
++|++.-+-.- ..-.++..|..+..-+.+...|.. -++.+.+...+-+- -.....+++||..+++| +....
T Consensus 118 D~LLlAR~DGh----~nLGvy~ldr~~g~~~~L~~~ps~-KG~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~ 192 (339)
T PF09910_consen 118 DRLLLARADGH----ANLGVYSLDRRTGKAEKLSSNPSL-KGTLVHDYACFGINNFHKGVSGIHCLDLISGKWVIESFDV 192 (339)
T ss_pred CEEEEEecCCc----ceeeeEEEcccCCceeeccCCCCc-CceEeeeeEEEeccccccCCceEEEEEccCCeEEEEeccc
Confidence 78887632111 122577777778777776632221 22233333333331 01357899999999999 33321
Q ss_pred C-----CCCCCCCCeeEEEECCeEEEE
Q 028925 139 P-----LTGSSSIGFRFGILDGKLLLF 160 (202)
Q Consensus 139 ~-----~~~~~~~~~~~~~~~~~i~v~ 160 (202)
. .+...+..-+++...+++|.+
T Consensus 193 ~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 193 SLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred ccCCCCCceEeeccccEEEEeeeEEEE
Confidence 1 011112233456667777765
No 152
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=76.20 E-value=32 Score=26.13 Aligned_cols=126 Identities=12% Similarity=0.096 Sum_probs=66.7
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEE--ECCEEEEEcCccCCCCCCcceEEEEeCCCCe
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS--FDGKLYVMGGRSSFTIGNSKFVDVYNPERHT 91 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~ 91 (202)
.+.|+..||. ..++..|+++.+-++.-. -..-+-|+++. .+++|+ .|+.+ .++.++|.+|.+
T Consensus 126 enSi~~AgGD-------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qil-sG~ED-------GtvRvWd~kt~k 189 (325)
T KOG0649|consen 126 ENSILFAGGD-------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQIL-SGAED-------GTVRVWDTKTQK 189 (325)
T ss_pred CCcEEEecCC-------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCccee-ecCCC-------ccEEEEeccccc
Confidence 6788888874 358889999888765521 11223344443 244554 44433 357888888877
Q ss_pred EEecc-----C---ccce--eeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEc
Q 028925 92 WCQMK-----N---GCVM--VTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFS 161 (202)
Q Consensus 92 W~~~~-----~---~~~~--~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g 161 (202)
-..+- + .|.. .-.+...+....++||.. .+..++....+-..+- |. +.....+...++..+++
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp--~lslwhLrsse~t~vf-pi----pa~v~~v~F~~d~vl~~ 262 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP--KLSLWHLRSSESTCVF-PI----PARVHLVDFVDDCVLIG 262 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEeccCceEEecCCC--ceeEEeccCCCceEEE-ec----ccceeEeeeecceEEEe
Confidence 55543 1 1111 123455567777888633 3444454444433332 22 22334455555545555
Q ss_pred c
Q 028925 162 L 162 (202)
Q Consensus 162 G 162 (202)
|
T Consensus 263 G 263 (325)
T KOG0649|consen 263 G 263 (325)
T ss_pred c
Confidence 4
No 153
>PTZ00420 coronin; Provisional
Probab=75.54 E-value=52 Score=28.31 Aligned_cols=61 Identities=16% Similarity=0.370 Sum_probs=32.2
Q ss_pred EEEEEcCcCCCCCceeeeEEEeCCCCCeE-EcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCe
Q 028925 16 KIYAVGGYGMDGESLSSAEVYDPDTDKWN-LIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHT 91 (202)
Q Consensus 16 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~ 91 (202)
.+++.||.+ ..+.+||+.+.+=. .+. .+. .........+|.+++.++.+ +.+.+||+.+.+
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~~~i~-~~~-~V~SlswspdG~lLat~s~D-------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRAFQIN-MPK-KLSSLKWNIKGNLLSGTCVG-------KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEEEEEe-cCC-cEEEEEECCCCCEEEEEecC-------CEEEEEECCCCc
Confidence 344555543 35778888766421 111 111 11111112377777766532 468999998764
No 154
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=74.85 E-value=42 Score=26.91 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=41.7
Q ss_pred CCEEEEE--cCccCCCCCCcceEEEEeCCCCeEEeccCccceeeee-EEECC--EEEEEeCCCCCeEEEEeCCCCcEE
Q 028925 62 DGKLYVM--GGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAH-AVVGK--KLFCMEWKNQRKLTIFDPEDNSWK 134 (202)
Q Consensus 62 ~~~iy~~--gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~~--~iyv~Gg~~~~~~~~yd~~~~~W~ 134 (202)
++++|+. ++.........+.++++|..+.+-...-+......+. +.-++ .+|+..+ ..+.+.++|..+.+=.
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST-GDKTLYIFDAETGKEL 335 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC-CCCcEEEEECcCCeEE
Confidence 6789984 2222233335578999998877644432322222222 33343 5666644 4678999998887533
No 155
>PTZ00420 coronin; Provisional
Probab=74.46 E-value=56 Score=28.14 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=46.0
Q ss_pred ceEEEEeCCCCeEE-eccCccceeeee-EEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEE----E
Q 028925 80 KFVDVYNPERHTWC-QMKNGCVMVTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGI----L 153 (202)
Q Consensus 80 ~~~~~yd~~~~~W~-~~~~~~~~~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~----~ 153 (202)
..+.+||..+.+=. .+. ......++ ...++.+++.++ ..+.+.+||+.+.+=...- ...........+.. -
T Consensus 148 gtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i~tl-~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIASSF-HIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred CeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEEEEE-ecccCCceeEEEEeeeEcC
Confidence 46888998766411 111 11111222 223677777664 5678999999876422111 11110111111111 2
Q ss_pred CCeEEEEcccCCCC-ceeEEEeCCC
Q 028925 154 DGKLLLFSLEEEPS-YSTLLYDPNA 177 (202)
Q Consensus 154 ~~~i~v~gG~~~~~-~~~~~yd~~~ 177 (202)
++..++.+|+.... ..+.+||..+
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCC
Confidence 44555555554322 3688888774
No 156
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=73.73 E-value=52 Score=27.52 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.2
Q ss_pred eeEEEeCCCCCCCcceee
Q 028925 169 STLLYDPNAASGSEWQTS 186 (202)
Q Consensus 169 ~~~~yd~~~~~~~~W~~~ 186 (202)
+++.|||+++ .-+++
T Consensus 288 dIylydP~td---~lekl 302 (668)
T COG4946 288 DIYLYDPETD---SLEKL 302 (668)
T ss_pred cEEEeCCCcC---cceee
Confidence 7999999998 77777
No 157
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=73.61 E-value=28 Score=24.25 Aligned_cols=78 Identities=12% Similarity=0.278 Sum_probs=46.2
Q ss_pred EEECCEEEEEeCCCCC----eEEEEeCCCCcE-EEeccCCCCC-CCCCeeEE-EECCeEEEEcccCC-CCceeEEEeC--
Q 028925 106 AVVGKKLFCMEWKNQR----KLTIFDPEDNSW-KMVPVPLTGS-SSIGFRFG-ILDGKLLLFSLEEE-PSYSTLLYDP-- 175 (202)
Q Consensus 106 ~~~~~~iyv~Gg~~~~----~~~~yd~~~~~W-~~~~~~~~~~-~~~~~~~~-~~~~~i~v~gG~~~-~~~~~~~yd~-- 175 (202)
+.++|.+|=+...... .+..||..+.+. +.++.|.... ......+. +.+++|-++-.... ....+|+-+.
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~~ 81 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKYG 81 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeeec
Confidence 4567777766532221 689999999999 6665443332 12334443 33778888753222 2346777652
Q ss_pred -CCCCCCcceee
Q 028925 176 -NAASGSEWQTS 186 (202)
Q Consensus 176 -~~~~~~~W~~~ 186 (202)
... +|+++
T Consensus 82 ~~~~---SWtK~ 90 (164)
T PF07734_consen 82 YGKE---SWTKL 90 (164)
T ss_pred cCcc---eEEEE
Confidence 355 89997
No 158
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=73.60 E-value=39 Score=25.93 Aligned_cols=155 Identities=12% Similarity=0.192 Sum_probs=73.3
Q ss_pred ceEEEEECCEEEEEcC-cCCCCCceeeeEEEe---CCCCCeEEc--CCCCC-------CceeeeeEEECCEEEEEcCccC
Q 028925 7 DFACAEVNGKIYAVGG-YGMDGESLSSAEVYD---PDTDKWNLI--ESLRR-------PRWGCFACSFDGKLYVMGGRSS 73 (202)
Q Consensus 7 ~~~~~~~~~~iyv~GG-~~~~~~~~~~~~~yd---~~t~~W~~~--~~~~~-------~r~~~~~~~~~~~iy~~gG~~~ 73 (202)
.+++-+++++||++=- ++-....+...+.|| ...+.|+.. +..+. .-.-|+.+.+++.=|.+|=..+
T Consensus 77 CmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnG 156 (367)
T PF12217_consen 77 CMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNG 156 (367)
T ss_dssp -B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-
T ss_pred eeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccC
Confidence 3456688999998742 111222334445554 245678643 33332 3345677778777777764332
Q ss_pred CCCCCcceEE-EE-----eCCCC-eEEecc---CccceeeeeEEECCEEEEEeC-C---C-CCeEEEEeCCCCcEEEecc
Q 028925 74 FTIGNSKFVD-VY-----NPERH-TWCQMK---NGCVMVTAHAVVGKKLFCMEW-K---N-QRKLTIFDPEDNSWKMVPV 138 (202)
Q Consensus 74 ~~~~~~~~~~-~y-----d~~~~-~W~~~~---~~~~~~~~~~~~~~~iyv~Gg-~---~-~~~~~~yd~~~~~W~~~~~ 138 (202)
.- ..+++- +| +.... .=+.++ .......+.-.+++.+|+.-- . + -..+.+-+.....|..+..
T Consensus 157 D~--sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrf 234 (367)
T PF12217_consen 157 DV--SPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRF 234 (367)
T ss_dssp SS--SS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-
T ss_pred CC--CcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccc
Confidence 11 122222 22 11111 111222 112233445667999999852 1 1 2456777888888999974
Q ss_pred CCCCCCCCCeeEEEECCeEEEEcccC
Q 028925 139 PLTGSSSIGFRFGILDGKLLLFSLEE 164 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~v~gG~~ 164 (202)
| .--.....-++..++.||++|.+.
T Consensus 235 p-~nvHhtnlPFakvgD~l~mFgsER 259 (367)
T PF12217_consen 235 P-NNVHHTNLPFAKVGDVLYMFGSER 259 (367)
T ss_dssp T-T---SS---EEEETTEEEEEEE-S
T ss_pred c-ccccccCCCceeeCCEEEEEeccc
Confidence 4 222345556778999999999653
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=73.50 E-value=61 Score=28.15 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=59.5
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC-CCc---eeeeeE-EECCEEEEEcCccCCCCCCcceEEEEeCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR-RPR---WGCFAC-SFDGKLYVMGGRSSFTIGNSKFVDVYNPE 88 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r---~~~~~~-~~~~~iy~~gG~~~~~~~~~~~~~~yd~~ 88 (202)
++++++.. ....+++.++..+-+-.++.+.. .+. -.+.++ ..++.|.++++. ..+.+||.+
T Consensus 440 ~~k~~~~s------~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~--------g~I~v~nl~ 505 (691)
T KOG2048|consen 440 KNKLFLVS------KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR--------GQIFVYNLE 505 (691)
T ss_pred CceEEEEe------cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc--------ceEEEEEcc
Confidence 56777765 12346777777777766554432 211 122222 357778888743 359999999
Q ss_pred CCeEEeccCcc-ceeeeeE---EECCEEEEEeCCCCCeEEEEeCC
Q 028925 89 RHTWCQMKNGC-VMVTAHA---VVGKKLFCMEWKNQRKLTIFDPE 129 (202)
Q Consensus 89 ~~~W~~~~~~~-~~~~~~~---~~~~~iyv~Gg~~~~~~~~yd~~ 129 (202)
+.+-+.+.+.. ....++. ...++|.+.- +.+.++.||.+
T Consensus 506 ~~~~~~l~~rln~~vTa~~~~~~~~~~lvvat--s~nQv~efdi~ 548 (691)
T KOG2048|consen 506 TLESHLLKVRLNIDVTAAAFSPFVRNRLVVAT--SNNQVFEFDIE 548 (691)
T ss_pred cceeecchhccCcceeeeeccccccCcEEEEe--cCCeEEEEecc
Confidence 99877776222 2222222 2355677663 57788888884
No 160
>PLN00181 protein SPA1-RELATED; Provisional
Probab=72.30 E-value=73 Score=28.53 Aligned_cols=128 Identities=13% Similarity=0.144 Sum_probs=59.8
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEE---ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEE-eccCccceeeeeE
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACS---FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWC-QMKNGCVMVTAHA 106 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~---~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~~~~ 106 (202)
..+.+||..+++-. ..+.........+. .++.+++.|+.+ ..+.+||..+.+-. .+.. ........
T Consensus 555 g~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-------g~v~iWd~~~~~~~~~~~~-~~~v~~v~ 624 (793)
T PLN00181 555 GVVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDD-------GSVKLWSINQGVSIGTIKT-KANICCVQ 624 (793)
T ss_pred CeEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCC-------CEEEEEECCCCcEEEEEec-CCCeEEEE
Confidence 35777888765432 21211111112222 246677777643 46888887654321 1111 11111111
Q ss_pred E--ECCEEEEEeCCCCCeEEEEeCCCCc--EEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCC
Q 028925 107 V--VGKKLFCMEWKNQRKLTIFDPEDNS--WKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPN 176 (202)
Q Consensus 107 ~--~~~~iyv~Gg~~~~~~~~yd~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~ 176 (202)
. .++.+++.|+ ..+.+.+||..+.. ...+. .....-..+...++..++.++.. ..+.+||..
T Consensus 625 ~~~~~g~~latgs-~dg~I~iwD~~~~~~~~~~~~----~h~~~V~~v~f~~~~~lvs~s~D---~~ikiWd~~ 690 (793)
T PLN00181 625 FPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTMI----GHSKTVSYVRFVDSSTLVSSSTD---NTLKLWDLS 690 (793)
T ss_pred EeCCCCCEEEEEe-CCCeEEEEECCCCCccceEec----CCCCCEEEEEEeCCCEEEEEECC---CEEEEEeCC
Confidence 1 2456666664 67789999987543 22221 10111122223455656655432 246666664
No 161
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=72.22 E-value=43 Score=25.87 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=35.8
Q ss_pred EECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 028925 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 60 ~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
..+|.++..||.+. .+..+|....+--.--+......+.++..++..++-+ .-..+-++|.++..
T Consensus 201 SpDGslcasGgkdg-------~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 201 SPDGSLCASGGKDG-------EAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKA 265 (315)
T ss_pred CCCCCEEecCCCCc-------eEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCCceEEEeccchh
Confidence 35999999999763 4566666544421111222233344444555444432 34457777776654
No 162
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=72.07 E-value=27 Score=26.61 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=32.7
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEE---ECCEEEEEcCcc
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS---FDGKLYVMGGRS 72 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~---~~~~iy~~gG~~ 72 (202)
+..+||.||.+ ..+++||-.|++= +........++.-++ -+|.+|..|..+
T Consensus 235 ~k~~fVaGged------~~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 235 KKEFFVAGGED------FKVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CCceEEecCcc------eEEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCCC
Confidence 66899999975 3588899887752 222223333333332 389999888654
No 163
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=70.88 E-value=49 Score=25.96 Aligned_cols=148 Identities=15% Similarity=0.137 Sum_probs=71.1
Q ss_pred ceEEEEECCEEEEEcCc-----CCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECC-EEEEEcCccCCCCCCcc
Q 028925 7 DFACAEVNGKIYAVGGY-----GMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDG-KLYVMGGRSSFTIGNSK 80 (202)
Q Consensus 7 ~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iy~~gG~~~~~~~~~~ 80 (202)
+=..+.-++.+|+---. .........+|++||. .+..++-.-.....+-.+-+-++ .+|+.-- ...
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT-------~~~ 185 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADT-------PAN 185 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeC-------CCC
Confidence 33444456777765322 1122345689999984 45544432122233333334466 4555421 235
Q ss_pred eEEEEeCCCC--------eEEeccCccceeeee-EEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEE
Q 028925 81 FVDVYNPERH--------TWCQMKNGCVMVTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFG 151 (202)
Q Consensus 81 ~~~~yd~~~~--------~W~~~~~~~~~~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~ 151 (202)
.++.|+.... .+......+-..-++ +--++.||+........+.+|+++...-..+..|... -...++.
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~--~t~~~Fg 263 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKR--PTNPAFG 263 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCC--CccceEe
Confidence 6777755420 111111111111222 2337788865433345999999995555555544222 2222211
Q ss_pred -EECCeEEEEcccC
Q 028925 152 -ILDGKLLLFSLEE 164 (202)
Q Consensus 152 -~~~~~i~v~gG~~ 164 (202)
...+.|||..-..
T Consensus 264 G~~~~~L~iTs~~~ 277 (307)
T COG3386 264 GPDLNTLYITSARS 277 (307)
T ss_pred CCCcCEEEEEecCC
Confidence 1247888877443
No 164
>PRK02889 tolB translocation protein TolB; Provisional
Probab=70.69 E-value=58 Score=26.69 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=68.9
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceee-eeEEEC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVT-AHAVVG 109 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~ 109 (202)
.+++..|.....-+.+.......... ...-+|+.+++....+ ....++++|..+.+=..+...+.... .....+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p-~wSPDG~~la~~s~~~----~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISP-AWSPDGTKLAYVSFES----KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccc-eEcCCCCEEEEEEccC----CCcEEEEEECCCCCEEEeecCCCCccceEECCC
Confidence 56888887654444443222221111 1223555444433221 12468999988776555542222111 122334
Q ss_pred C-EEEEEe-CCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 110 K-KLFCME-WKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 110 ~-~iyv~G-g~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
+ +|++.. ......++.+|..+...+.+... .. ...... -.-||+-+++.........++.++.+++ ..+.+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~-~~~~~~-wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---~~~~l 323 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQS-SG-IDTEPF-FSPDGRSIYFTSDRGGAPQIYRMPASGG---AAQRV 323 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCC-CC-CCcCeE-EcCCCCEEEEEecCCCCcEEEEEECCCC---ceEEE
Confidence 4 454432 22346788888887776666421 11 111122 2334543333333222346777777665 55554
No 165
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.33 E-value=50 Score=25.85 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=58.9
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeE-
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW- 92 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W- 92 (202)
+++||+.-+- ....+ -+|..|..+.+-+.+..-|..+ .....+..+|-+ .... .....+.+||..+++|
T Consensus 117 ~D~LLlAR~D--Gh~nL-Gvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i---~~~~-~g~~~i~~~Dli~~~~~ 186 (339)
T PF09910_consen 117 EDRLLLARAD--GHANL-GVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI---NNFH-KGVSGIHCLDLISGKWV 186 (339)
T ss_pred cCEEEEEecC--Cccee-eeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec---cccc-cCCceEEEEEccCCeEE
Confidence 5677776432 12222 4788888888877776544442 223344444433 2211 2456899999999999
Q ss_pred -EeccCc---------cceeeeeEEECCEEEEEeCCCCCeEEEEeCC
Q 028925 93 -CQMKNG---------CVMVTAHAVVGKKLFCMEWKNQRKLTIFDPE 129 (202)
Q Consensus 93 -~~~~~~---------~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~ 129 (202)
+..+.. .+....++...+++|.+ ....+...||.
T Consensus 187 ~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF---~rGGi~vgnP~ 230 (339)
T PF09910_consen 187 IESFDVSLSVDGGPVIRPELGAMASAYNRLFAF---VRGGIFVGNPY 230 (339)
T ss_pred EEecccccCCCCCceEeeccccEEEEeeeEEEE---EeccEEEeCCC
Confidence 444311 11113345566777777 34556777776
No 166
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=69.77 E-value=59 Score=26.40 Aligned_cols=139 Identities=15% Similarity=0.184 Sum_probs=71.9
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC--CCceeeeeEE---ECCEEEEEcCccCCCCCCcceEEEEeCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR--RPRWGCFACS---FDGKLYVMGGRSSFTIGNSKFVDVYNPE 88 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~--~~r~~~~~~~---~~~~iy~~gG~~~~~~~~~~~~~~yd~~ 88 (202)
+++..+-|+-+ ..+..+|+.|.+ |+. ....+...++ -+|+.+.-|-.+ .++.+|||+
T Consensus 126 ~g~~l~tGsGD------~TvR~WD~~TeT-----p~~t~KgH~~WVlcvawsPDgk~iASG~~d-------g~I~lwdpk 187 (480)
T KOG0271|consen 126 TGSRLVTGSGD------TTVRLWDLDTET-----PLFTCKGHKNWVLCVAWSPDGKKIASGSKD-------GSIRLWDPK 187 (480)
T ss_pred CCceEEecCCC------ceEEeeccCCCC-----cceeecCCccEEEEEEECCCcchhhccccC-------CeEEEecCC
Confidence 44555555432 245666887754 221 2223333332 377777665433 468899999
Q ss_pred CCeEEecc--Cccceeee------eEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEE
Q 028925 89 RHTWCQMK--NGCVMVTA------HAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLF 160 (202)
Q Consensus 89 ~~~W~~~~--~~~~~~~~------~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~ 160 (202)
+++=.-.+ .......+ ....+.+ +++.++..+++.++|....+-...- .. ......++..||.-+++
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~l--sg--HT~~VTCvrwGG~gliy 262 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRTL--SG--HTASVTCVRWGGEGLIY 262 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEEe--cc--CccceEEEEEcCCceEE
Confidence 88622211 11111111 1111223 3343345678889888877766652 11 13345566778887777
Q ss_pred cccCCCCceeEEEeCCC
Q 028925 161 SLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 161 gG~~~~~~~~~~yd~~~ 177 (202)
.|..... +.+|+...
T Consensus 263 SgS~Drt--Ikvw~a~d 277 (480)
T KOG0271|consen 263 SGSQDRT--IKVWRALD 277 (480)
T ss_pred ecCCCce--EEEEEccc
Confidence 7655443 55555443
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=69.07 E-value=59 Score=27.38 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=33.6
Q ss_pred ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEec-c-CccceeeeeEEE-CCEEEEEeCCCCCeEEEEeCC
Q 028925 61 FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQM-K-NGCVMVTAHAVV-GKKLFCMEWKNQRKLTIFDPE 129 (202)
Q Consensus 61 ~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~-~-~~~~~~~~~~~~-~~~iyv~Gg~~~~~~~~yd~~ 129 (202)
.+.+|++-=|.+ +.+..||....+=... . ..| ..+..+. +|.++++| ...+.+..||..
T Consensus 219 sne~l~vsVG~D-------kki~~yD~~s~~s~~~l~y~~P--lstvaf~~~G~~L~aG-~s~G~~i~YD~R 280 (673)
T KOG4378|consen 219 SNEALLVSVGYD-------KKINIYDIRSQASTDRLTYSHP--LSTVAFSECGTYLCAG-NSKGELIAYDMR 280 (673)
T ss_pred CccceEEEeccc-------ceEEEeecccccccceeeecCC--cceeeecCCceEEEee-cCCceEEEEecc
Confidence 467777765543 5788999875432221 1 111 1223333 45555554 577889999874
No 168
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=68.82 E-value=58 Score=26.00 Aligned_cols=129 Identities=14% Similarity=0.114 Sum_probs=70.7
Q ss_pred CCCCeEEcCCCCCCceeee--eEEECCEEEEEcCccCCCCCCcceEEEEeCCCCe--EEeccCc--cceeeeeEEECCEE
Q 028925 39 DTDKWNLIESLRRPRWGCF--ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHT--WCQMKNG--CVMVTAHAVVGKKL 112 (202)
Q Consensus 39 ~t~~W~~~~~~~~~r~~~~--~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~--~~~~~~~~~~~~~i 112 (202)
.+..|...-.......... .+..++++|+.. ....+..+|+.+.+ |+..... ..........+++|
T Consensus 43 g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~--------~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i 114 (370)
T COG1520 43 GTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGT--------RDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKI 114 (370)
T ss_pred cceeeeeecccCccceEeccccEeeCCeEEEec--------CCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeE
Confidence 4556754322222223333 366799999862 12268889998876 8765532 11222233447888
Q ss_pred EEEeCCCCCeEEEEeCCCC--cEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCccee
Q 028925 113 FCMEWKNQRKLTIFDPEDN--SWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 113 yv~Gg~~~~~~~~yd~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
|+-. ....+++||..+. .|..-... . .......+..++.+|+.. ....++.+|.+++ .-.|+.
T Consensus 115 ~~g~--~~g~~y~ld~~~G~~~W~~~~~~--~-~~~~~~~v~~~~~v~~~s----~~g~~~al~~~tG-~~~W~~ 179 (370)
T COG1520 115 YVGS--WDGKLYALDASTGTLVWSRNVGG--S-PYYASPPVVGDGTVYVGT----DDGHLYALNADTG-TLKWTY 179 (370)
T ss_pred EEec--ccceEEEEECCCCcEEEEEecCC--C-eEEecCcEEcCcEEEEec----CCCeEEEEEccCC-cEEEEE
Confidence 8764 3347889998544 48876522 1 233334445577777753 1224666666653 114663
No 169
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=66.75 E-value=55 Score=24.97 Aligned_cols=134 Identities=14% Similarity=0.133 Sum_probs=65.1
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCc-eeeeeEE-ECCEEEEEcCccCCCCCCcceEEEEeCCCCeE-EeccCc------cce
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPR-WGCFACS-FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW-CQMKNG------CVM 101 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~-~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W-~~~~~~------~~~ 101 (202)
..++++|+.++...... +|..- .-.++++ -+|...+. .. +....++++..+.+- +.+.|. ...
T Consensus 146 g~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a-~n------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAA-AN------NKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred CcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEE-ec------CCccEEEEEccCCCccccceEhhheecccce
Confidence 46888899888765442 22222 1122333 35554433 32 233567777655321 111111 111
Q ss_pred eeee-EEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEE-CCeEEEEcccCCCCceeEEEeCCCC
Q 028925 102 VTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGIL-DGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 102 ~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
.... ...+++.++.- ++...+.+++.++. .+++.-.....+....++.- +++-++.|+ .. ..+..||++.+
T Consensus 218 il~C~lSPd~k~lat~-ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTas-sd--~~~rlW~~~~~ 290 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATC-SSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTAS-SD--HTARLWDLSAG 290 (311)
T ss_pred EEEEEECCCCcEEEee-cCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecC-CC--CceeecccccC
Confidence 1112 22355544443 36778889888777 33332223333455555544 444444443 22 46778888876
No 170
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=65.94 E-value=94 Score=27.36 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=52.6
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCe
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHT 91 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~ 91 (202)
.+-+.-|++.|... ..+..+|..+..-.++=.-...... +++......|+..|.. ...+.+||..+.+
T Consensus 543 FHPNs~Y~aTGSsD-----~tVRlWDv~~G~~VRiF~GH~~~V~-al~~Sp~Gr~LaSg~e------d~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 543 FHPNSNYVATGSSD-----RTVRLWDVSTGNSVRIFTGHKGPVT-ALAFSPCGRYLASGDE------DGLIKIWDLANGS 610 (707)
T ss_pred ECCcccccccCCCC-----ceEEEEEcCCCcEEEEecCCCCceE-EEEEcCCCceEeeccc------CCcEEEEEcCCCc
Confidence 33466677766321 3466667776655443211111111 1222233445554432 2458889987754
Q ss_pred EE-eccCcccee-eeeEEECCEEEEEeCCCCCeEEEEeCC
Q 028925 92 WC-QMKNGCVMV-TAHAVVGKKLFCMEWKNQRKLTIFDPE 129 (202)
Q Consensus 92 W~-~~~~~~~~~-~~~~~~~~~iyv~Gg~~~~~~~~yd~~ 129 (202)
-. .+....... .-....++.|++.|| ..+.+..+|..
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg-~DnsV~lWD~~ 649 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGG-ADNSVRLWDLT 649 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecC-CCCeEEEEEch
Confidence 11 111221111 223456889999987 56777777754
No 171
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=65.37 E-value=40 Score=22.91 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=33.9
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCc---EEEeccCCCCCCCCCeeEEE------ECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 110 KKLFCMEWKNQRKLTIFDPEDNS---WKMVPVPLTGSSSIGFRFGI------LDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 110 ~~iyv~Gg~~~~~~~~yd~~~~~---W~~~~~~~~~~~~~~~~~~~------~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
..++++| +...+..||...|. +++++. +...++ ..+.+.++||.. ++.=||.+.+
T Consensus 64 ~D~LliG--t~t~llaYDV~~N~d~Fyke~~D--------Gvn~i~~g~~~~~~~~l~ivGGnc----si~Gfd~~G~ 127 (136)
T PF14781_consen 64 RDCLLIG--TQTSLLAYDVENNSDLFYKEVPD--------GVNAIVIGKLGDIPSPLVIVGGNC----SIQGFDYEGN 127 (136)
T ss_pred cCEEEEe--ccceEEEEEcccCchhhhhhCcc--------ceeEEEEEecCCCCCcEEEECceE----EEEEeCCCCc
Confidence 4566777 78899999998886 444431 112222 246788888764 4555666543
No 172
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=64.73 E-value=59 Score=24.61 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=75.0
Q ss_pred eeeEEEeCCCCCeEEc-CCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEEC
Q 028925 31 SSAEVYDPDTDKWNLI-ESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVG 109 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 109 (202)
+.+..|||....-.+. +..-........+.-+-++...|| .+.+.+||-.|++-.+.-..-...--++-++
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg--------Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG--------DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeeccccccccccccCCC--------CceEEEEEcccCeeeeecccccceeeEEEec
Confidence 3466667776554332 111222233333333445555554 3568999999887443221111111123343
Q ss_pred -CEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 110 -KKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 110 -~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
..-.++.|+....+..+|...+..+.+... ...+.+...+.+.++..|.|... ..+..||+..+
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQil--dea~D~V~Si~v~~heIvaGS~D---GtvRtydiR~G 175 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQIL--DEAKDGVSSIDVAEHEIVAGSVD---GTVRTYDIRKG 175 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchh--hhhcCceeEEEecccEEEeeccC---CcEEEEEeecc
Confidence 333444555778999999988888777632 22466677777777777766322 25778887654
No 173
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=64.08 E-value=99 Score=26.95 Aligned_cols=67 Identities=24% Similarity=0.450 Sum_probs=40.6
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEE--------cCCCC-CCceeeeeEEEC--CEEEEEcCccCCCCCCcc
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNL--------IESLR-RPRWGCFACSFD--GKLYVMGGRSSFTIGNSK 80 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~--------~~~~~-~~r~~~~~~~~~--~~iy~~gG~~~~~~~~~~ 80 (202)
+-++.+.+.||.+ +.+.+||..+..=+. ..+++ .++..-.+...+ +-+++.||.. +
T Consensus 127 ak~~~lvaSgGLD------~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-------k 193 (735)
T KOG0308|consen 127 AKNNELVASGGLD------RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-------K 193 (735)
T ss_pred ccCceeEEecCCC------ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-------c
Confidence 3378888999986 346677776553211 12333 445444444443 4477777743 5
Q ss_pred eEEEEeCCCCe
Q 028925 81 FVDVYNPERHT 91 (202)
Q Consensus 81 ~~~~yd~~~~~ 91 (202)
.+.+|||.+.+
T Consensus 194 ~lr~wDprt~~ 204 (735)
T KOG0308|consen 194 DLRLWDPRTCK 204 (735)
T ss_pred ceEEecccccc
Confidence 78999998875
No 174
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=63.90 E-value=75 Score=25.51 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=19.2
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEE
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNL 45 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 45 (202)
.-+..|||. +..+...+-+.|..+++-..
T Consensus 114 ~dgk~l~V~-----n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 114 PDNKTLLFY-----QFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCCCEEEEe-----cCCCCCEEEEEECCCCcEEE
Confidence 334567776 23334678999999887654
No 175
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=61.98 E-value=55 Score=27.64 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=61.3
Q ss_pred cccceEEEEE--CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCC-------CCCceeeeeEEECCEEEEEcCccCC
Q 028925 4 ARYDFACAEV--NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESL-------RRPRWGCFACSFDGKLYVMGGRSSF 74 (202)
Q Consensus 4 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-------~~~r~~~~~~~~~~~iy~~gG~~~~ 74 (202)
.|...+.|+. ++++ +.+|+.. .++..||. ..|..-+.+ +..-..+...+.+|++++.-|.+
T Consensus 316 ~Rv~~tsC~~nrdg~~-iAagc~D-----GSIQ~W~~--~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D-- 385 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKL-IAAGCLD-----GSIQIWDK--GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD-- 385 (641)
T ss_pred cccCceeeecCCCcch-hhhcccC-----Cceeeeec--CCcccccceEeeeccCCCCceeEEEeccccchhhhccCC--
Confidence 4566666766 4566 5556542 23445554 345433332 11122233344688877765544
Q ss_pred CCCCcceEEEEeCCC-----CeEEeccCccceeeeeEEECCEEEEEeCC-----CCCeEEEEeCCCCcEEEec
Q 028925 75 TIGNSKFVDVYNPER-----HTWCQMKNGCVMVTAHAVVGKKLFCMEWK-----NQRKLTIFDPEDNSWKMVP 137 (202)
Q Consensus 75 ~~~~~~~~~~yd~~~-----~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~-----~~~~~~~yd~~~~~W~~~~ 137 (202)
..+-++|... +.|+-++.....--+++..+++|++.|-+ ....++.||.. +.+.+.
T Consensus 386 -----~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~--t~d~v~ 451 (641)
T KOG0772|consen 386 -----DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM--TLDTVY 451 (641)
T ss_pred -----CceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc--ceeeEE
Confidence 2455555543 34555553322334456668899988842 23467888854 444443
No 176
>smart00284 OLF Olfactomedin-like domains.
Probab=61.95 E-value=69 Score=24.43 Aligned_cols=149 Identities=18% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCEEEEEcCcCCCCCceeeeEEE----eCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVY----DPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~y----d~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
++++|++-+.. ...+.++.| |.....+.+.-.||.+-.+...++++|.+|.--. ....+..||..+
T Consensus 34 ~~~~wv~~~~~---~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-------~s~~iiKydL~t 103 (255)
T smart00284 34 KSLYWYMPLNT---RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-------NSHDICRFDLTT 103 (255)
T ss_pred CceEEEEcccc---CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-------CCccEEEEECCC
Confidence 46788775542 112234444 2223333333345666677778889999998532 235699999998
Q ss_pred CeEEecc--Ccc----cee--------eeeEEECCEEEEE---eCCCCC--eEEEEeCCCC----cEEEeccCCCCCCCC
Q 028925 90 HTWCQMK--NGC----VMV--------TAHAVVGKKLFCM---EWKNQR--KLTIFDPEDN----SWKMVPVPLTGSSSI 146 (202)
Q Consensus 90 ~~W~~~~--~~~----~~~--------~~~~~~~~~iyv~---Gg~~~~--~~~~yd~~~~----~W~~~~~~~~~~~~~ 146 (202)
++-.... |.. +.. --.++.+..|+++ .. +.+ .+-..|+.+- +|..-- + .+.
T Consensus 104 ~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~-~~g~ivvSkLnp~tL~ve~tW~T~~-~----k~s 177 (255)
T smart00284 104 ETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQ-NAGKIVISKLNPATLTIENTWITTY-N----KRS 177 (255)
T ss_pred CcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccC-CCCCEEEEeeCcccceEEEEEEcCC-C----ccc
Confidence 8754322 111 000 0113334455555 22 222 3446777554 455521 1 122
Q ss_pred CeeEEEECCeEEEEcccC-CCCceeEEEeCCCC
Q 028925 147 GFRFGILDGKLLLFSLEE-EPSYSTLLYDPNAA 178 (202)
Q Consensus 147 ~~~~~~~~~~i~v~gG~~-~~~~~~~~yd~~~~ 178 (202)
...+.++=|.||++-... ....-.+.||..++
T Consensus 178 a~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~ 210 (255)
T smart00284 178 ASNAFMICGILYVTRSLGSKGEKVFYAYDTNTG 210 (255)
T ss_pred ccccEEEeeEEEEEccCCCCCcEEEEEEECCCC
Confidence 223445668999986422 33346888999886
No 177
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=61.53 E-value=86 Score=25.41 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=42.5
Q ss_pred EEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCC-----CCCC--ceeeeeEEECCEEEEEcCccCCCC-----
Q 028925 9 ACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIES-----LRRP--RWGCFACSFDGKLYVMGGRSSFTI----- 76 (202)
Q Consensus 9 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-----~~~~--r~~~~~~~~~~~iy~~gG~~~~~~----- 76 (202)
-++..+|++|++.- ...++.+|..- +-.++++ +... ......+...|+++++........
T Consensus 204 DIi~~kGkfYAvD~-------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~ 275 (373)
T PLN03215 204 DIIVHKGQTYALDS-------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKA 275 (373)
T ss_pred EEEEECCEEEEEcC-------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCccccccc
Confidence 45677899999832 12455565321 1122221 1111 123446667889999876422110
Q ss_pred -----CCcce--EEEEeCCCCeEEecc
Q 028925 77 -----GNSKF--VDVYNPERHTWCQMK 96 (202)
Q Consensus 77 -----~~~~~--~~~yd~~~~~W~~~~ 96 (202)
..... ++..|.+..+|.++.
T Consensus 276 ~~~~~~~t~~f~VfklD~~~~~WveV~ 302 (373)
T PLN03215 276 DGFEYSRTVGFKVYKFDDELAKWMEVK 302 (373)
T ss_pred ccccccceeEEEEEEEcCCCCcEEEec
Confidence 01123 444588888999987
No 178
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=61.22 E-value=40 Score=25.97 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=38.4
Q ss_pred EECCEEEEEcCcCCCCC-ceeeeEEEeCC-CCCeEEcCC-CCCCceeeeeEEECCEEEEEcCc
Q 028925 12 EVNGKIYAVGGYGMDGE-SLSSAEVYDPD-TDKWNLIES-LRRPRWGCFACSFDGKLYVMGGR 71 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~-~~~~~~~yd~~-t~~W~~~~~-~~~~r~~~~~~~~~~~iy~~gG~ 71 (202)
..+++.+++|....... ..+.+.-|.-. .++|+.++. +......+-.+.++|++. +||.
T Consensus 34 ~~~Gk~~IaGRVE~Rdswe~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~geli-fGGv 95 (298)
T PF08950_consen 34 EYNGKTVIAGRVEKRDSWEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGELI-FGGV 95 (298)
T ss_dssp EETTEEEEEEEEE-TT-SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEEE-EEEE
T ss_pred eECCEEEEEeeeecCCchhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEEE-EeeE
Confidence 45889999986543333 45667777655 789999987 455677888889999987 5664
No 179
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=60.68 E-value=1e+02 Score=25.98 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=36.1
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 109 GKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 109 ~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
.+.-++..|.+.+.+.+||.....+..--.. .-..-...+.+.+...|+..||...+. .+..||..++
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-H~aAVKA~awcP~q~~lLAsGGGs~D~-~i~fwn~~~g 378 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-HTAAVKALAWCPWQSGLLATGGGSADR-CIKFWNTNTG 378 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEec-cceeeeEeeeCCCccCceEEcCCCccc-EEEEEEcCCC
Confidence 4445555555888999998832222211100 000122233334577888888765444 5666666554
No 180
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=60.57 E-value=77 Score=24.55 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=51.1
Q ss_pred ceEEEEeCCCCeEEecc-Cc-cceeeeeEEECC--EEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCC-CCCeeEEEEC
Q 028925 80 KFVDVYNPERHTWCQMK-NG-CVMVTAHAVVGK--KLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSS-SIGFRFGILD 154 (202)
Q Consensus 80 ~~~~~yd~~~~~W~~~~-~~-~~~~~~~~~~~~--~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~-~~~~~~~~~~ 154 (202)
+++..||...+.=-.+. .+ ........+..+ ..+++-++..+.+-++|..+-+-... .++.. ......+..|
T Consensus 127 kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~---~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 127 KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT---FIGHSGYVNTVTVSPD 203 (315)
T ss_pred ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc---cccccccEEEEEECCC
Confidence 56888887766533443 22 333333333322 45555444678888888876543332 22212 2223334568
Q ss_pred CeEEEEcccCCCCceeEEEeCCCC
Q 028925 155 GKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 155 ~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
|.+...||... .++.+|....
T Consensus 204 GslcasGgkdg---~~~LwdL~~~ 224 (315)
T KOG0279|consen 204 GSLCASGGKDG---EAMLWDLNEG 224 (315)
T ss_pred CCEEecCCCCc---eEEEEEccCC
Confidence 99999987643 4566666553
No 181
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=60.37 E-value=1.1e+02 Score=26.13 Aligned_cols=145 Identities=13% Similarity=0.092 Sum_probs=82.6
Q ss_pred eeeeEEEeCCCCCeEEcCC--CC-CCceeeeeEEECCEEEEEcCccC----CCCCCcceEEEEeCCCCeEEeccC--ccc
Q 028925 30 LSSAEVYDPDTDKWNLIES--LR-RPRWGCFACSFDGKLYVMGGRSS----FTIGNSKFVDVYNPERHTWCQMKN--GCV 100 (202)
Q Consensus 30 ~~~~~~yd~~t~~W~~~~~--~~-~~r~~~~~~~~~~~iy~~gG~~~----~~~~~~~~~~~yd~~~~~W~~~~~--~~~ 100 (202)
...+++|++...+.+-.+. .+ .-..+++.-.++|.|-++..... ......+.++++|..-+.--++.. ...
T Consensus 247 ~T~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~la~gE 326 (521)
T PF09826_consen 247 STTIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEGLAPGE 326 (521)
T ss_pred ceEEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccccCCCc
Confidence 4678888888777654332 22 22355566667888888764431 222245679999865555555541 122
Q ss_pred eeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc-EEEeccCCCCCCCCCeeEEEE-CCeEEEEcccCCCC--------cee
Q 028925 101 MVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS-WKMVPVPLTGSSSIGFRFGIL-DGKLLLFSLEEEPS--------YST 170 (202)
Q Consensus 101 ~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~-~~~i~v~gG~~~~~--------~~~ 170 (202)
.-.++-+++++.|++.-....-++..|++.-+ =+.++....+.... -+..+ +++|+-+|-+.... -++
T Consensus 327 ~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~--YLHP~~e~~LlGiG~~~~~~~~~~~~~GlKi 404 (521)
T PF09826_consen 327 RIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSD--YLHPYDENHLLGIGKDTDEDEGTGWTQGLKI 404 (521)
T ss_pred eEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchh--ceeECCCCeEEEEcccCcccccccccceeEE
Confidence 33556678999999976556778888876533 33333222221111 12233 56777787554442 366
Q ss_pred EEEeCC
Q 028925 171 LLYDPN 176 (202)
Q Consensus 171 ~~yd~~ 176 (202)
-.||..
T Consensus 405 sLFDVS 410 (521)
T PF09826_consen 405 SLFDVS 410 (521)
T ss_pred EEEecC
Confidence 667654
No 182
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=59.30 E-value=1e+02 Score=25.57 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=53.9
Q ss_pred eeeEEEeCCCC-Ce-EEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-Cccceeee-eE
Q 028925 31 SSAEVYDPDTD-KW-NLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NGCVMVTA-HA 106 (202)
Q Consensus 31 ~~~~~yd~~t~-~W-~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~-~~ 106 (202)
..+.+||...+ .- +.+..++... ...+..-.+++++.|+.+ .++.++|..+.+-.+.- .......+ ..
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D-------~tvriWd~~~~~~~~~l~~hs~~is~~~f 296 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDD-------GTVRIWDVRTGECVRKLKGHSDGISGLAF 296 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCC-------CcEEEEeccCCeEEEeeeccCCceEEEEE
Confidence 46788888443 22 3333344444 222223356777777643 46899999885544332 21111122 23
Q ss_pred EECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 028925 107 VVGKKLFCMEWKNQRKLTIFDPEDNSWK 134 (202)
Q Consensus 107 ~~~~~iyv~Gg~~~~~~~~yd~~~~~W~ 134 (202)
..++.+++.+ ...+.+.+||..+..-.
T Consensus 297 ~~d~~~l~s~-s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 297 SPDGNLLVSA-SYDGTIRVWDLETGSKL 323 (456)
T ss_pred CCCCCEEEEc-CCCccEEEEECCCCcee
Confidence 3366677766 45788999999887754
No 183
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=59.22 E-value=87 Score=24.71 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=59.2
Q ss_pred CEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC------CCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCC
Q 028925 15 GKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR------RPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPE 88 (202)
Q Consensus 15 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~------~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~ 88 (202)
+.+-++||......+.+.+.+||-...+-....... .-|..+.++++.++|||+.=.+ +.+.+.++|..
T Consensus 59 N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~-----n~k~l~~~et~ 133 (346)
T KOG2111|consen 59 NYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPD-----NPKLLHVIETR 133 (346)
T ss_pred ceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCC-----Chhheeeeecc
Confidence 456667776545556778889984333221111111 2345567778888888874221 34556666543
Q ss_pred CCeEEeccCccceeeee-EEECCEEEEEeCCCCCeEEEEeCCCCcE
Q 028925 89 RHTWCQMKNGCVMVTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNSW 133 (202)
Q Consensus 89 ~~~W~~~~~~~~~~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~W 133 (202)
.| | ....+. ...+..+.++-|...+.+++-|....+-
T Consensus 134 ~N------P--kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~ 171 (346)
T KOG2111|consen 134 SN------P--KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP 171 (346)
T ss_pred cC------C--CceEeecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence 22 1 112222 1224567777776778889888765554
No 184
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=59.10 E-value=86 Score=24.61 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=28.2
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeE-EECCEEEEEcCccCCCCCCcceEEEEeCCC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFAC-SFDGKLYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~-~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
+++-.||+.+++-..++....+.....-+ -.+-.+++-|..+ +++..+|+..
T Consensus 94 k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD-------KTlKfWD~R~ 146 (347)
T KOG0647|consen 94 KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWD-------KTLKFWDTRS 146 (347)
T ss_pred CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccc-------cceeecccCC
Confidence 56788999999887776544443221111 1222244444332 4566677653
No 185
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=59.09 E-value=1e+02 Score=25.48 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=66.2
Q ss_pred ceeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccc---eeeeeEEECCEEEEEeCCCCCeEEEEeC
Q 028925 53 RWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV---MVTAHAVVGKKLFCMEWKNQRKLTIFDP 128 (202)
Q Consensus 53 r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~~~~~~~~~~~iyv~Gg~~~~~~~~yd~ 128 (202)
..+.+++.+ ||.|+..|-. ...+.+||.+... .+...+. ...+..+.++.-|++-......|.++|.
T Consensus 348 v~~ts~~fHpDgLifgtgt~-------d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTP-------DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred ceeEEeeEcCCceEEeccCC-------CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 344555555 5556655432 2458889987766 3332221 1122334455555554445666999998
Q ss_pred CCCc-EEEeccCCCCCCCCCeeEEEE--CCeEEEEcccCCCCceeEEEeCCCCCCCcceeecccCCce
Q 028925 129 EDNS-WKMVPVPLTGSSSIGFRFGIL--DGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSKIKPSGL 193 (202)
Q Consensus 129 ~~~~-W~~~~~~~~~~~~~~~~~~~~--~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~~p~~~ 193 (202)
.... ...... .. ........+ -|+.++++|. .-.|+.|+..+. +|+++...+...
T Consensus 419 RKl~n~kt~~l--~~--~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~~k---~W~~~~~~~~~s 476 (506)
T KOG0289|consen 419 RKLKNFKTIQL--DE--KKEVNSLSFDQSGTYLGIAGS---DLQVYICKKKTK---SWTEIKELADHS 476 (506)
T ss_pred hhhcccceeec--cc--cccceeEEEcCCCCeEEeecc---eeEEEEEecccc---cceeeehhhhcc
Confidence 6554 222321 11 112222233 3566666643 336788888888 999996665443
No 186
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=58.55 E-value=93 Score=24.82 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=77.1
Q ss_pred CEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCC--CceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCC--
Q 028925 15 GKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRR--PRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERH-- 90 (202)
Q Consensus 15 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~-- 90 (202)
+.||++...+... --..+.+|+.+++-+.+..-+. .--++.++.-++++.+..-+. ...+-+|-..++
T Consensus 52 ~~LY~v~~~~~~g--gvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~------~g~v~v~p~~~dG~ 123 (346)
T COG2706 52 RHLYVVNEPGEEG--GVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH------SGSVSVYPLQADGS 123 (346)
T ss_pred CEEEEEEecCCcC--cEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc------CceEEEEEcccCCc
Confidence 4688886543222 2346777887777766643221 111344444455544443332 234555543332
Q ss_pred eEEecc--------Cccc-----eeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEecc-CCCCCCCCCeeEEEE-CC
Q 028925 91 TWCQMK--------NGCV-----MVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPV-PLTGSSSIGFRFGIL-DG 155 (202)
Q Consensus 91 ~W~~~~--------~~~~-----~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~-~~~~~~~~~~~~~~~-~~ 155 (202)
-|.... |..+ .+.+-...++++.+.---....+..|+.+.+.-+.... ...+..-.. .++.+ ++
T Consensus 124 l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR-Hi~FHpn~ 202 (346)
T COG2706 124 LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR-HIVFHPNG 202 (346)
T ss_pred cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc-eEEEcCCC
Confidence 111111 1111 22222333554433321236788999998777766541 122211222 34444 33
Q ss_pred -eEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 156 -KLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 156 -~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
-.|++. +=.....++.||+..+ +.+++
T Consensus 203 k~aY~v~-EL~stV~v~~y~~~~g---~~~~l 230 (346)
T COG2706 203 KYAYLVN-ELNSTVDVLEYNPAVG---KFEEL 230 (346)
T ss_pred cEEEEEe-ccCCEEEEEEEcCCCc---eEEEe
Confidence 456665 3333447888888876 77776
No 187
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.85 E-value=86 Score=23.91 Aligned_cols=72 Identities=14% Similarity=0.205 Sum_probs=37.6
Q ss_pred EEEEEeCCCCCeEEEE--eCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceeecc
Q 028925 111 KLFCMEWKNQRKLTIF--DPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSKI 188 (202)
Q Consensus 111 ~iyv~Gg~~~~~~~~y--d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~ 188 (202)
+-+++.++..+.+.+| +.+...|+.--....+...+...-..-++-|-|-||.+ .+..|-+..+ ++|.+++.
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN----kvtlwke~~~--Gkw~~v~~ 296 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN----KVTLWKENVD--GKWEEVGE 296 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc----EEEEEEeCCC--CcEEEccc
Confidence 3444443344444444 45566788754222332344444444455555656543 4666665543 28998854
No 188
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=56.68 E-value=82 Score=26.24 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=29.4
Q ss_pred CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeee-EEEC-CEEEEEeCCCCCeEEEEeC
Q 028925 62 DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAH-AVVG-KKLFCMEWKNQRKLTIFDP 128 (202)
Q Consensus 62 ~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~-~~~~-~~iyv~Gg~~~~~~~~yd~ 128 (202)
.|.-++..|.+ ..+..+|.+|++-...-......... .-.+ ..++++|| ....+..||.
T Consensus 269 ~g~~fLS~sfD-------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~-sd~ki~~wDi 329 (503)
T KOG0282|consen 269 CGTSFLSASFD-------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG-SDKKIRQWDI 329 (503)
T ss_pred cCCeeeeeecc-------eeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec-CCCcEEEEec
Confidence 45556655553 35777888888755432111111111 1123 47888887 3333444433
No 189
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=56.15 E-value=73 Score=22.90 Aligned_cols=64 Identities=14% Similarity=0.079 Sum_probs=37.6
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCC
Q 028925 109 GKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 109 ~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
+.++.++-|.....+.+||.+...-..+. .. ......-.-+|+.++++|.......+..||..+
T Consensus 71 g~~favi~g~~~~~v~lyd~~~~~i~~~~---~~--~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~ 134 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKGKKIFSFG---TQ--PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK 134 (194)
T ss_pred CCEEEEEEccCCcccEEEcCcccEeEeec---CC--CceEEEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 44565665555668999999633333332 11 111111134788888888765445788899875
No 190
>PRK10115 protease 2; Provisional
Probab=55.95 E-value=1.5e+02 Score=26.31 Aligned_cols=147 Identities=8% Similarity=-0.039 Sum_probs=74.6
Q ss_pred eeeEEEeCCCCCe--EEcCCCCCCceeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEeC--CCCe-EEeccCccceeee
Q 028925 31 SSAEVYDPDTDKW--NLIESLRRPRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYNP--ERHT-WCQMKNGCVMVTA 104 (202)
Q Consensus 31 ~~~~~yd~~t~~W--~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd~--~~~~-W~~~~~~~~~~~~ 104 (202)
.++|++++.|+.- ..+-.-............ +++..++...+. ....++.|+. .+.. |..++........
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA----TTSEVLLLDAELADAEPFVFLPRRKDHEYS 274 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC----ccccEEEEECcCCCCCceEEEECCCCCEEE
Confidence 6799999998732 222111112222222333 555444544332 2346777773 2334 4444322222233
Q ss_pred eEEECCEEEEEe--CCCCCeEEEEeCC-CCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCC
Q 028925 105 HAVVGKKLFCME--WKNQRKLTIFDPE-DNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGS 181 (202)
Q Consensus 105 ~~~~~~~iyv~G--g~~~~~~~~yd~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~ 181 (202)
....++.+|+.- +.....+...+.. ...|+.+-.+... ..--.+...++.|++..-... ...++++|..++
T Consensus 275 ~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~--~~i~~~~~~~~~l~~~~~~~g-~~~l~~~~~~~~--- 348 (686)
T PRK10115 275 LDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPREN--IMLEGFTLFTDWLVVEERQRG-LTSLRQINRKTR--- 348 (686)
T ss_pred EEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCC--CEEEEEEEECCEEEEEEEeCC-EEEEEEEcCCCC---
Confidence 344567888875 2234456666766 5789988633222 112234445777777653322 235777777654
Q ss_pred cceeec
Q 028925 182 EWQTSK 187 (202)
Q Consensus 182 ~W~~~~ 187 (202)
....+.
T Consensus 349 ~~~~l~ 354 (686)
T PRK10115 349 EVIGIA 354 (686)
T ss_pred ceEEec
Confidence 555543
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=55.83 E-value=90 Score=23.82 Aligned_cols=86 Identities=8% Similarity=0.093 Sum_probs=50.5
Q ss_pred eEEcCCCC-----CCceeeeeEE-ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-CccceeeeeEEECCEEEEE
Q 028925 43 WNLIESLR-----RPRWGCFACS-FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NGCVMVTAHAVVGKKLFCM 115 (202)
Q Consensus 43 W~~~~~~~-----~~r~~~~~~~-~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~iyv~ 115 (202)
|+...|+. .|-.++-... -.+.|+..||. ..++..|.++++.++.- ....+.++.+.=+..--++
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD--------~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD--------GVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCC--------eEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence 66655543 2333333222 35678888863 35889999999877653 2333334433322222233
Q ss_pred eCCCCCeEEEEeCCCCcEEEe
Q 028925 116 EWKNQRKLTIFDPEDNSWKMV 136 (202)
Q Consensus 116 Gg~~~~~~~~yd~~~~~W~~~ 136 (202)
.|.....+.++|.++.+=..+
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred ecCCCccEEEEeccccceeEE
Confidence 445788999999998886665
No 192
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=55.42 E-value=1.3e+02 Score=25.56 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=37.7
Q ss_pred eEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEE--CCeEEEEcccCCCCceeEEEeCCC
Q 028925 105 HAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGIL--DGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 105 ~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
++..++.-.++|| ...++++|.++.+.-.+....... +.....+.+ ++..++.| . ....+..||.++
T Consensus 450 Av~~~~~~vaVGG-~Dgkvhvysl~g~~l~ee~~~~~h--~a~iT~vaySpd~~yla~~-D--a~rkvv~yd~~s 518 (603)
T KOG0318|consen 450 AVSPDGSEVAVGG-QDGKVHVYSLSGDELKEEAKLLEH--RAAITDVAYSPDGAYLAAG-D--ASRKVVLYDVAS 518 (603)
T ss_pred EEcCCCCEEEEec-ccceEEEEEecCCcccceeeeecc--cCCceEEEECCCCcEEEEe-c--cCCcEEEEEccc
Confidence 3445777778888 556699999887765443322222 333333333 55555554 2 233566677654
No 193
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.94 E-value=80 Score=25.59 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=34.5
Q ss_pred EEEEEcCccCCCCCCcceEEEEeCCCC--eEEecc-C-------ccceeeeeEEECC---EEEEEeCCCCCeEEEEeCCC
Q 028925 64 KLYVMGGRSSFTIGNSKFVDVYNPERH--TWCQMK-N-------GCVMVTAHAVVGK---KLFCMEWKNQRKLTIFDPED 130 (202)
Q Consensus 64 ~iy~~gG~~~~~~~~~~~~~~yd~~~~--~W~~~~-~-------~~~~~~~~~~~~~---~iyv~Gg~~~~~~~~yd~~~ 130 (202)
.|..+||... .+.+.+||.++. .|+..- | .|.+...+.+..+ .-++.+ .....+..||+..
T Consensus 162 ~Iva~GGke~-----~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~-T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 162 YIVATGGKEN-----INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI-TRYHQVRLYDTRH 235 (412)
T ss_pred ceEecCchhc-----ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE-ecceeEEEecCcc
Confidence 4777788652 456777777654 466543 1 1223333444433 222222 2467788899875
Q ss_pred Cc
Q 028925 131 NS 132 (202)
Q Consensus 131 ~~ 132 (202)
.+
T Consensus 236 qR 237 (412)
T KOG3881|consen 236 QR 237 (412)
T ss_pred cC
Confidence 43
No 194
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=53.17 E-value=1.4e+02 Score=25.21 Aligned_cols=95 Identities=16% Similarity=0.185 Sum_probs=46.2
Q ss_pred ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCcEEEecc
Q 028925 61 FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVV--GKKLFCMEWKNQRKLTIFDPEDNSWKMVPV 138 (202)
Q Consensus 61 ~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~--~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~ 138 (202)
+...|...||-. ..+.+..+|+.+.+=.....-........-. ...|...-|...+.+.+|+-.+ -..+..
T Consensus 354 ~q~~lLAsGGGs-----~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~ 426 (484)
T KOG0305|consen 354 WQSGLLATGGGS-----ADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAE 426 (484)
T ss_pred CccCceEEcCCC-----cccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeee
Confidence 456677777654 3467888888766522221111111111111 2345555565667677766554 222222
Q ss_pred CCCCCCCCCeeEEEECCeEEEEcc
Q 028925 139 PLTGSSSIGFRFGILDGKLLLFSL 162 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~v~gG 162 (202)
......|..+-+...|+.-.+.|+
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGA 450 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEec
Confidence 333434433333344655555554
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=52.10 E-value=1.3e+02 Score=24.62 Aligned_cols=118 Identities=14% Similarity=0.022 Sum_probs=57.4
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEEC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVG 109 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~ 109 (202)
.++|.+|+.+++.+++....... ....-.-+|+ |+..+... ....++.+|..+..-+.+.... . ......+
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~-~~~~wSpDG~~i~f~s~~~-----g~~~I~~~~~~~~~~~~l~~~~-~-~~~~SpD 343 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNN-TEPSWSPDGQSILFTSDRS-----GSPQVYRMSASGGGASLVGGRG-Y-SAQISAD 343 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCc-CCEEECCCCCEEEEEECCC-----CCceEEEEECCCCCeEEecCCC-C-CccCCCC
Confidence 35888898877766654322111 1111223555 44443222 1235777776555433332111 1 1122334
Q ss_pred CE-EEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEccc
Q 028925 110 KK-LFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLE 163 (202)
Q Consensus 110 ~~-iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~ 163 (202)
++ |++.++ ..+..+|..+..++.+.... . .... ...-+++.++++..
T Consensus 344 G~~ia~~~~---~~i~~~Dl~~g~~~~lt~~~-~--~~~~-~~sPdG~~i~~~s~ 391 (429)
T PRK01742 344 GKTLVMING---DNVVKQDLTSGSTEVLSSTF-L--DESP-SISPNGIMIIYSST 391 (429)
T ss_pred CCEEEEEcC---CCEEEEECCCCCeEEecCCC-C--CCCc-eECCCCCEEEEEEc
Confidence 44 444432 56777999999888764221 1 1112 22346766666654
No 196
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=51.60 E-value=1.4e+02 Score=24.72 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=59.8
Q ss_pred CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccc-eeeeeEEECCEEEEEeC--CCCCeEEEEeCCCCcEEEecc
Q 028925 62 DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV-MVTAHAVVGKKLFCMEW--KNQRKLTIFDPEDNSWKMVPV 138 (202)
Q Consensus 62 ~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~~~~~iyv~Gg--~~~~~~~~yd~~~~~W~~~~~ 138 (202)
+|+-+++....+ ...+++++|..+.+=.++..... ...-....+|+-+++.- .....+++||++..+=+++.
T Consensus 248 DG~~l~f~~~rd----g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT- 322 (425)
T COG0823 248 DGSKLAFSSSRD----GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT- 322 (425)
T ss_pred CCCEEEEEECCC----CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee-
Confidence 455444443322 23579999988877444431111 11112333454344431 22458999999998887775
Q ss_pred CCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCc-ceee
Q 028925 139 PLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSE-WQTS 186 (202)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~-W~~~ 186 (202)
.... ... .-....+|+.+++-+.......+..+|+.++ . |+.+
T Consensus 323 ~~~~-~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~---~~~~~l 366 (425)
T COG0823 323 FSGG-GNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASG---GKIRIL 366 (425)
T ss_pred ccCC-CCc-CccCCCCCCEEEEEeccCCceeeEEeccCCC---CcEEEc
Confidence 2111 111 2223345544444332211246888888877 4 7776
No 197
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=50.73 E-value=94 Score=26.29 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=41.2
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCC--CceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCe
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRR--PRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHT 91 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~ 91 (202)
+++-+++||.. .++-+||+.+-+=+..+.++. +-+++-+...+.+++...= ....+.+||..+.+
T Consensus 476 dgrtLivGGea------stlsiWDLAapTprikaeltssapaCyALa~spDakvcFscc-------sdGnI~vwDLhnq~ 542 (705)
T KOG0639|consen 476 DGRTLIVGGEA------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCC-------SDGNIAVWDLHNQT 542 (705)
T ss_pred CCceEEecccc------ceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeec-------cCCcEEEEEcccce
Confidence 78888999862 457778988766555555554 3334444455777665421 12358889987765
Q ss_pred E
Q 028925 92 W 92 (202)
Q Consensus 92 W 92 (202)
-
T Consensus 543 ~ 543 (705)
T KOG0639|consen 543 L 543 (705)
T ss_pred e
Confidence 3
No 198
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=50.47 E-value=1.1e+02 Score=23.16 Aligned_cols=153 Identities=19% Similarity=0.184 Sum_probs=78.1
Q ss_pred cceEEEEECCEEEEEcCcCCCCCceeeeEEEeC-CCCCeEEcCCC----CCC------c-eeeeeEEECCEEEEEcCccC
Q 028925 6 YDFACAEVNGKIYAVGGYGMDGESLSSAEVYDP-DTDKWNLIESL----RRP------R-WGCFACSFDGKLYVMGGRSS 73 (202)
Q Consensus 6 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~~W~~~~~~----~~~------r-~~~~~~~~~~~iy~~gG~~~ 73 (202)
....++..++..|+++..+... ..+.++.. .-..|+..... +.. . ..+.+...+|+.|++=....
T Consensus 11 ~DP~i~~~~~~yY~~~t~~~~~---~~i~v~~S~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~y~~~~~ 87 (286)
T PF04616_consen 11 ADPSIVRFGDGYYLYGTTDPEG---PGIPVWSSKDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYMYYSDSG 87 (286)
T ss_dssp CSEEEEEETTEEEEEEEEBTCE---SBEEEEEESSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEEEEEEES
T ss_pred CCCEEEEECCEEEEEEEcCCCC---CeEEEEECCCCcccccceeeecccccccccccccccCCeEEEcCCeEEEEEEccC
Confidence 4567778899999997654221 22333321 22358765421 111 1 34556667999888644111
Q ss_pred CCCCCcceEEEEeCCCCeEEeccCcc----ce-eeeeEEEC-CEEEEEeCCCC-----Ce--EEEEeCCCCcEEEec-c-
Q 028925 74 FTIGNSKFVDVYNPERHTWCQMKNGC----VM-VTAHAVVG-KKLFCMEWKNQ-----RK--LTIFDPEDNSWKMVP-V- 138 (202)
Q Consensus 74 ~~~~~~~~~~~yd~~~~~W~~~~~~~----~~-~~~~~~~~-~~iyv~Gg~~~-----~~--~~~yd~~~~~W~~~~-~- 138 (202)
........+..-+.....|+...... .. -......+ ++.|++-+... .. +...+.+..++.... .
T Consensus 88 ~~~~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~~~~~i~~~~l~~d~~~~~~~~~~~ 167 (286)
T PF04616_consen 88 GDAGSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGDPGGGIYIAELDPDGTSLTGEPVVV 167 (286)
T ss_dssp TSTTEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTSSEEEEEEEEEETTTSSEEEEECEE
T ss_pred CCCCcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCccceeEEeecccCccccccCccccc
Confidence 11111122333444457888775221 11 13334445 89888854222 22 344565555544432 1
Q ss_pred --C----CCCCCCCCeeEEEECCeEEEEc
Q 028925 139 --P----LTGSSSIGFRFGILDGKLLLFS 161 (202)
Q Consensus 139 --~----~~~~~~~~~~~~~~~~~i~v~g 161 (202)
+ .......+..+...+|+.|++-
T Consensus 168 ~~~~~~~~~~~~~Egp~~~k~~g~yYl~~ 196 (286)
T PF04616_consen 168 IFPGDEGWDGGVVEGPFVFKHGGKYYLFY 196 (286)
T ss_dssp EEEESGSSTTTBEEEEEEEEETTEEEEEE
T ss_pred ccccccccCCccccceEEEEcCCCEEEEE
Confidence 1 1223456677888899999864
No 199
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=49.41 E-value=58 Score=24.49 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=34.7
Q ss_pred CccccceEEEEE-CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC----CCceeeeeEEE-CCEEEE
Q 028925 2 NVARYDFACAEV-NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR----RPRWGCFACSF-DGKLYV 67 (202)
Q Consensus 2 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~----~~r~~~~~~~~-~~~iy~ 67 (202)
|.+.....++.+ +++++++.... .....-.++.-.-..++|.....+. ..-.++.++.. +|+|||
T Consensus 205 ~~~~~~~~~~~~~~g~~~~~~~~~-~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 205 PNPNSSISLVRLSDGRLLLVYNNP-DGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp SSCCEEEEEEECTTSEEEEEEECS-STSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred CcccCCceEEEcCCCCEEEEEECC-CCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 334444444444 56888887632 2222223333333477897654432 22466666665 678886
No 200
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=49.24 E-value=2.4e+02 Score=26.84 Aligned_cols=112 Identities=13% Similarity=0.187 Sum_probs=58.8
Q ss_pred eEEECCEEEEEcCccCCCCCCcceEEEEeCCC-CeEEecc--CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEE
Q 028925 58 ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPER-HTWCQMK--NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWK 134 (202)
Q Consensus 58 ~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~-~~W~~~~--~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~ 134 (202)
++.++|+|.+.-| ..+.+++.+. +.-.-++ +.+.+-+.+.++++-|++..=...-.+..|+.+..+-.
T Consensus 1103 vceV~G~l~~~~G---------qKI~v~~l~r~~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rls 1173 (1366)
T KOG1896|consen 1103 VCEVRGHLLSSQG---------QKIIVRKLDRDSELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLS 1173 (1366)
T ss_pred EEEeccEEEEccC---------cEEEEEEeccCCcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEE
Confidence 3446777665432 3566775522 2212121 22333344444444443321011224455666666666
Q ss_pred EeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 135 MVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
.+.....+...+..-+-+-|+.++.+--..+.+..++.|+|+.-
T Consensus 1174 L~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~ 1217 (1366)
T KOG1896|consen 1174 LLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENI 1217 (1366)
T ss_pred EeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCc
Confidence 66644444233344445667888887766666678999999763
No 201
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=49.04 E-value=1.6e+02 Score=24.56 Aligned_cols=132 Identities=14% Similarity=0.212 Sum_probs=64.4
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEE-E--CCEEEEEcCccCCCCCCcceEEEEeCC
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACS-F--DGKLYVMGGRSSFTIGNSKFVDVYNPE 88 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~-~--~~~iy~~gG~~~~~~~~~~~~~~yd~~ 88 (202)
..+++.++.||.+ ..+.+||+.|.+ .+..+..-|....... . -.++|..+ ....+-+|+..
T Consensus 211 S~Dgkylatgg~d------~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt~~lys~s--------~Drsvkvw~~~ 274 (479)
T KOG0299|consen 211 SSDGKYLATGGRD------RHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGTSELYSAS--------ADRSVKVWSID 274 (479)
T ss_pred cCCCcEEEecCCC------ceEEEecCcccc--hhhcccccccceeeeeeecCccceeeee--------cCCceEEEehh
Confidence 3488999999875 346777877644 2222222332222222 2 23466553 12346666554
Q ss_pred CCeEEecc-Cccceeeee-EEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccC
Q 028925 89 RHTWCQMK-NGCVMVTAH-AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEE 164 (202)
Q Consensus 89 ~~~W~~~~-~~~~~~~~~-~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~ 164 (202)
.....+.- ..+....+. +.-.++...+|| ...++..|+....+ +.+- .+....--+++++++.=||.|..+
T Consensus 275 ~~s~vetlyGHqd~v~~IdaL~reR~vtVGg-rDrT~rlwKi~ees-qlif---rg~~~sidcv~~In~~HfvsGSdn 347 (479)
T KOG0299|consen 275 QLSYVETLYGHQDGVLGIDALSRERCVTVGG-RDRTVRLWKIPEES-QLIF---RGGEGSIDCVAFINDEHFVSGSDN 347 (479)
T ss_pred HhHHHHHHhCCccceeeechhcccceEEecc-ccceeEEEeccccc-eeee---eCCCCCeeeEEEecccceeeccCC
Confidence 33211110 111111111 233567777777 56677776663222 1111 111122335668888888888654
No 202
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=47.21 E-value=46 Score=18.66 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=16.0
Q ss_pred EECCEEEEEcCccCCCCCCcceEEEEeC
Q 028925 60 SFDGKLYVMGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 60 ~~~~~iy~~gG~~~~~~~~~~~~~~yd~ 87 (202)
.-+|||++.|-...........+.+|++
T Consensus 9 q~DGkIlv~G~~~~~~~~~~~~l~Rln~ 36 (55)
T TIGR02608 9 QSDGKILVAGYVDNSSGNNDFVLARLNA 36 (55)
T ss_pred CCCCcEEEEEEeecCCCcccEEEEEECC
Confidence 3489999988543221212334666765
No 203
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=46.84 E-value=1.7e+02 Score=24.47 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=17.1
Q ss_pred CEEEEEcCcCCCCCceeeeEEEeCCCCC
Q 028925 15 GKIYAVGGYGMDGESLSSAEVYDPDTDK 42 (202)
Q Consensus 15 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~ 42 (202)
.+++++||.+ +.+..||..+++
T Consensus 312 ~n~fl~G~sd------~ki~~wDiRs~k 333 (503)
T KOG0282|consen 312 QNIFLVGGSD------KKIRQWDIRSGK 333 (503)
T ss_pred CcEEEEecCC------CcEEEEeccchH
Confidence 4899999875 457888888766
No 204
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.61 E-value=1.7e+02 Score=24.22 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=48.6
Q ss_pred eEEEeCCCCCeEEcCCCCCCceeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEeCCCC---eEEeccCccceeeeeEEE
Q 028925 33 AEVYDPDTDKWNLIESLRRPRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYNPERH---TWCQMKNGCVMVTAHAVV 108 (202)
Q Consensus 33 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~~~~~~ 108 (202)
++.+|..|..-...-+-..+-...+++.+ ++.-++.|+.+ ..+..+|...+ .|+-....+..-.++...
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-------r~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD-------RTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-------CcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 56667766554333221122222333333 67777777643 45666666543 577665433322332333
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEE
Q 028925 109 GKKLFCMEWKNQRKLTIFDPEDNSWK 134 (202)
Q Consensus 109 ~~~iyv~Gg~~~~~~~~yd~~~~~W~ 134 (202)
+..+++++ ....+..|+.++..=.
T Consensus 366 gk~vl~v~--~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 366 GKYVLLVT--VDKKIRLYNREARVDR 389 (519)
T ss_pred CcEEEEEe--cccceeeechhhhhhh
Confidence 44566665 5667778877665544
No 205
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=46.59 E-value=1.6e+02 Score=23.85 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=81.9
Q ss_pred ECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeE--EECCEEEEEcCccCCCCCCcceEEEEeCCCC
Q 028925 13 VNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFAC--SFDGKLYVMGGRSSFTIGNSKFVDVYNPERH 90 (202)
Q Consensus 13 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~--~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~ 90 (202)
.+.++|+..+. .+.+.++|..+++-..-.... +.-+.++ ..++++|+..... ....+.+.|+.++
T Consensus 84 ~~~~vyv~~~~------~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~-----~~~~vsvid~~t~ 150 (381)
T COG3391 84 AGNKVYVTTGD------SNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGN-----GNNTVSVIDAATN 150 (381)
T ss_pred CCCeEEEecCC------CCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEeccc-----CCceEEEEeCCCC
Confidence 35679998654 356888887766643332222 1222222 2356899975421 1357889999888
Q ss_pred eEEeccCccceeeee--EEECCEEEEEeCCCCCeEEEEeCCCCcEEEecc----CCCCCCCCCeeEEEECCeEEEEcccC
Q 028925 91 TWCQMKNGCVMVTAH--AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPV----PLTGSSSIGFRFGILDGKLLLFSLEE 164 (202)
Q Consensus 91 ~W~~~~~~~~~~~~~--~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~----~~~~~~~~~~~~~~~~~~i~v~gG~~ 164 (202)
+-....+........ ...+.++|+.- ...+.+..+|+.++.-.+ .. -..........+...+.++|+.-...
T Consensus 151 ~~~~~~~vG~~P~~~a~~p~g~~vyv~~-~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 151 KVTATIPVGNTPTGVAVDPDGNKVYVTN-SDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred eEEEEEecCCCcceEEECCCCCeEEEEe-cCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC
Confidence 755443221111222 22355699986 257888999988776443 21 11121122222223466799876443
Q ss_pred CCCceeEEEeCCCC
Q 028925 165 EPSYSTLLYDPNAA 178 (202)
Q Consensus 165 ~~~~~~~~yd~~~~ 178 (202)
. ...+...|..++
T Consensus 229 ~-~~~v~~id~~~~ 241 (381)
T COG3391 229 G-SNNVLKIDTATG 241 (381)
T ss_pred C-CceEEEEeCCCc
Confidence 2 235666676664
No 206
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=46.49 E-value=71 Score=19.92 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=28.4
Q ss_pred CcceEEEEeCCCCeEEeccCccceeeeeEEE-CCE-EEEEeCCCCCeEEEEeC
Q 028925 78 NSKFVDVYNPERHTWCQMKNGCVMVTAHAVV-GKK-LFCMEWKNQRKLTIFDP 128 (202)
Q Consensus 78 ~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~-iyv~Gg~~~~~~~~yd~ 128 (202)
+...+..|||.+++.+.+...-...-++++. ++. +++.- .....+.+|-.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E-t~~~Ri~rywl 86 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE-TGRYRILRYWL 86 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE-GGGTEEEEEES
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe-ccCceEEEEEE
Confidence 3467999999999998876433333444333 443 44443 23455666543
No 207
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=46.40 E-value=1.3e+02 Score=22.86 Aligned_cols=150 Identities=12% Similarity=0.097 Sum_probs=75.7
Q ss_pred CccccceEEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCC---eEEcCCCCC---------CceeeeeEEECCEEEEEc
Q 028925 2 NVARYDFACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDK---WNLIESLRR---------PRWGCFACSFDGKLYVMG 69 (202)
Q Consensus 2 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~~~---------~r~~~~~~~~~~~iy~~g 69 (202)
|.+-.+-.-++.++.+|.-.. ....+.+||+.+.. ++.++.+.. +....-.++-..-|+++=
T Consensus 65 p~~~~gTg~VVynGs~yynk~------~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviY 138 (249)
T KOG3545|consen 65 PYSWDGTGHVVYNGSLYYNKA------GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIY 138 (249)
T ss_pred CCCccccceEEEcceEEeecc------CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEe
Confidence 444445555666777777542 24568899998844 333332210 111111222233355552
Q ss_pred CccCCCCCCcceEEEEeCCC----CeEEeccCccceeeeeEEECCEEEEEeCCCCC--eE-EEEeCCCCcEEEeccCCCC
Q 028925 70 GRSSFTIGNSKFVDVYNPER----HTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQR--KL-TIFDPEDNSWKMVPVPLTG 142 (202)
Q Consensus 70 G~~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~--~~-~~yd~~~~~W~~~~~~~~~ 142 (202)
-..+.. ..--+-..||.+ .+|..--+ ++....+.++-|.+|++-..+.. .+ +.||..+++=+.+..|.+-
T Consensus 139 at~~~~--g~iv~skLdp~tl~~e~tW~T~~~-k~~~~~aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N 215 (249)
T KOG3545|consen 139 ATPENA--GTIVLSKLDPETLEVERTWNTTLP-KRSAGNAFMICGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPN 215 (249)
T ss_pred cccccC--CcEEeeccCHHHhheeeeeccccC-CCCcCceEEEeeeeEEEeccccCCceEEEEEEcCCCceecccccccc
Confidence 222111 111124556533 35643222 23344567778899999643222 23 6899998888777644333
Q ss_pred CCCCCeeEE---EECCeEEEEc
Q 028925 143 SSSIGFRFG---ILDGKLLLFS 161 (202)
Q Consensus 143 ~~~~~~~~~---~~~~~i~v~g 161 (202)
.-...+++ ..+.++|+..
T Consensus 216 -~y~~~~~idYNP~D~~LY~wd 236 (249)
T KOG3545|consen 216 -PYSYATMIDYNPRDRRLYAWD 236 (249)
T ss_pred -hhhhhhccCCCcccceeeEec
Confidence 12222333 2367899875
No 208
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=46.22 E-value=2e+02 Score=24.94 Aligned_cols=51 Identities=25% Similarity=0.466 Sum_probs=29.7
Q ss_pred EEeCCCCCeEEcCCCC-------CCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc
Q 028925 35 VYDPDTDKWNLIESLR-------RPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK 96 (202)
Q Consensus 35 ~yd~~t~~W~~~~~~~-------~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~ 96 (202)
.-.|.-+.|+.+++.+ .|-...=++..+|+++.--| +-+.+|..++|..++
T Consensus 212 ~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~G-----------VsRqNp~GdsWkdI~ 269 (705)
T KOG3669|consen 212 VDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREG-----------VSRQNPEGDSWKDIV 269 (705)
T ss_pred CCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEec-----------ccccCCCCchhhhcc
Confidence 3456667777765433 11111113345888776544 344678889999887
No 209
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.67 E-value=2.5e+02 Score=25.93 Aligned_cols=126 Identities=14% Similarity=0.124 Sum_probs=65.0
Q ss_pred EEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCc-eeeeeEEEC--CEEEEEcCccCCCCCCcceEEEEeCCCCeE
Q 028925 16 KIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR-WGCFACSFD--GKLYVMGGRSSFTIGNSKFVDVYNPERHTW 92 (202)
Q Consensus 16 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r-~~~~~~~~~--~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W 92 (202)
-|+|.||-+ ..-.+|+++ +|+.|+.-. .... .+.+++.+. ..+.+..|.+ +.+.+||....+=
T Consensus 219 pliVSG~DD----RqVKlWrmn-etKaWEvDt--crgH~nnVssvlfhp~q~lIlSnsED-------ksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 219 PLIVSGADD----RQVKLWRMN-ETKAWEVDT--CRGHYNNVSSVLFHPHQDLILSNSED-------KSIRVWDMTKRTS 284 (1202)
T ss_pred ceEEecCCc----ceeeEEEec-cccceeehh--hhcccCCcceEEecCccceeEecCCC-------ccEEEEecccccc
Confidence 567777643 234689997 578897543 1222 223344443 3566665543 4677888765441
Q ss_pred Eecc--CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCcee
Q 028925 93 CQMK--NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYST 170 (202)
Q Consensus 93 ~~~~--~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~ 170 (202)
-..- ...|...-++.....+|..|- .+.+.+|-.+ |...+.++.+|.+|.+-. ..+
T Consensus 285 v~tfrrendRFW~laahP~lNLfAAgH--DsGm~VFkle---------------RErpa~~v~~n~LfYvkd-----~~i 342 (1202)
T KOG0292|consen 285 VQTFRRENDRFWILAAHPELNLFAAGH--DSGMIVFKLE---------------RERPAYAVNGNGLFYVKD-----RFI 342 (1202)
T ss_pred eeeeeccCCeEEEEEecCCcceeeeec--CCceEEEEEc---------------ccCceEEEcCCEEEEEcc-----ceE
Confidence 1111 223333334444567777763 2233333211 223356677777776652 145
Q ss_pred EEEeCCC
Q 028925 171 LLYDPNA 177 (202)
Q Consensus 171 ~~yd~~~ 177 (202)
..||..+
T Consensus 343 ~~~d~~t 349 (1202)
T KOG0292|consen 343 RSYDLRT 349 (1202)
T ss_pred Eeeeccc
Confidence 5666655
No 210
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=45.49 E-value=2.2e+02 Score=25.61 Aligned_cols=94 Identities=12% Similarity=0.084 Sum_probs=46.1
Q ss_pred eeeeEEEeCCCCCeEEcCCC--CCCceeeeeEEE---CCEEEEEcCccCCCCCCcceEEEE------eCCCCeEEeccCc
Q 028925 30 LSSAEVYDPDTDKWNLIESL--RRPRWGCFACSF---DGKLYVMGGRSSFTIGNSKFVDVY------NPERHTWCQMKNG 98 (202)
Q Consensus 30 ~~~~~~yd~~t~~W~~~~~~--~~~r~~~~~~~~---~~~iy~~gG~~~~~~~~~~~~~~y------d~~~~~W~~~~~~ 98 (202)
.-.+|.|++.+++|...... |..-...+.+.. .-..++..|.+ ..-.+|++ .+....|....-.
T Consensus 431 ~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d-----g~~KiW~~~~~~n~~k~~s~W~c~~i~ 505 (792)
T KOG1963|consen 431 SLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD-----GDFKIWVFTDDSNIYKKSSNWTCKAIG 505 (792)
T ss_pred EEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC-----CeEEEEEEecccccCcCccceEEeeee
Confidence 34799999999999654332 222222222221 11123332222 12345555 4555567765511
Q ss_pred --cceeeee--EEECCEEEEEeCCCCCeEEEEeCCC
Q 028925 99 --CVMVTAH--AVVGKKLFCMEWKNQRKLTIFDPED 130 (202)
Q Consensus 99 --~~~~~~~--~~~~~~iyv~Gg~~~~~~~~yd~~~ 130 (202)
......+ ..-+|.+..++ ..+.+.+||+.+
T Consensus 506 sy~k~~i~a~~fs~dGslla~s--~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 506 SYHKTPITALCFSQDGSLLAVS--FDDTITIWDYDT 539 (792)
T ss_pred ccccCcccchhhcCCCcEEEEe--cCCEEEEecCCC
Confidence 1111112 22255777775 566777777766
No 211
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=45.41 E-value=2.2e+02 Score=25.15 Aligned_cols=101 Identities=16% Similarity=0.227 Sum_probs=53.5
Q ss_pred eeeEEEeCCCCCeEEc-CCCC-CCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-------Cccce
Q 028925 31 SSAEVYDPDTDKWNLI-ESLR-RPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-------NGCVM 101 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~-~~~~-~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-------~~~~~ 101 (202)
..+.+|+|.+.+=..- .+-| ..|.....-+++|++.++.|.+..+ .+.+.+||.++-.-..+. |.+..
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S---eRQv~~Y~Aq~l~~~pl~t~~lDvaps~Lv 818 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS---ERQVQMYDAQTLDLRPLYTQVLDVAPSPLV 818 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc---hhhhhhhhhhhccCCcceeeeecccCcccc
Confidence 3688899987652111 1112 2344444446899999999887543 456888887654322221 11100
Q ss_pred eeeeEEEC-CEEEEEeCCCCCeEEEEeCCCCcEEEec
Q 028925 102 VTAHAVVG-KKLFCMEWKNQRKLTIFDPEDNSWKMVP 137 (202)
Q Consensus 102 ~~~~~~~~-~~iyv~Gg~~~~~~~~yd~~~~~W~~~~ 137 (202)
. .--.+ +.+++. |.....+++|...-..=..++
T Consensus 819 P--~YD~Ds~~lflt-GKGD~~v~~yEv~~esPy~lp 852 (1012)
T KOG1445|consen 819 P--HYDYDSNVLFLT-GKGDRFVNMYEVIYESPYLLP 852 (1012)
T ss_pred c--cccCCCceEEEe-cCCCceEEEEEecCCCceeee
Confidence 0 01113 344544 446677888876555444443
No 212
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=45.02 E-value=1.5e+02 Score=23.25 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=52.1
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeE---Ec-CCCCCCceeeeeEEE-C-CEEEEEcCccCCCCCCcceEEEEeC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWN---LI-ESLRRPRWGCFACSF-D-GKLYVMGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~-~~~~~~r~~~~~~~~-~-~~iy~~gG~~~~~~~~~~~~~~yd~ 87 (202)
.++....||.+ +.+-+|+++++.=+ ++ ..++....+.+.+.+ + +.|.--+| ..+.-.+|.
T Consensus 108 Sg~~VAcGGLd------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SG--------D~TCalWDi 173 (343)
T KOG0286|consen 108 SGNFVACGGLD------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSG--------DMTCALWDI 173 (343)
T ss_pred CCCeEEecCcC------ceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCC--------CceEEEEEc
Confidence 55666667765 34667887765322 22 224455566666665 3 34443333 235677888
Q ss_pred CCCeEEeccC---ccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCC
Q 028925 88 ERHTWCQMKN---GCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDN 131 (202)
Q Consensus 88 ~~~~W~~~~~---~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~ 131 (202)
++.+=...-. .........-.+.+.|+-|| -.....++|....
T Consensus 174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~-cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG-CDKSAKLWDVRSG 219 (343)
T ss_pred ccceEEEEecCCcccEEEEecCCCCCCeEEecc-cccceeeeeccCc
Confidence 8776333221 11111111111678888876 3444455555443
No 213
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=44.27 E-value=1.6e+02 Score=23.21 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=45.7
Q ss_pred ceEEEEeCCCCeEEeccCccceeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEE
Q 028925 80 KFVDVYNPERHTWCQMKNGCVMVTAHAVV-GKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLL 158 (202)
Q Consensus 80 ~~~~~yd~~~~~W~~~~~~~~~~~~~~~~-~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (202)
..+.+||..+..=..+........+.... ....++.|| -...+..+|+.. +...........-+++.+ .+..+
T Consensus 75 g~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs-WD~~ik~wD~R~----~~~~~~~d~~kkVy~~~v-~g~~L 148 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS-WDKTIKFWDPRN----KVVVGTFDQGKKVYCMDV-SGNRL 148 (323)
T ss_pred ceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc-cCccEEEEeccc----cccccccccCceEEEEec-cCCEE
Confidence 46889999888766665322222222222 233344454 567788888765 111111111122233333 44445
Q ss_pred EEcccCCCCceeEEEeCCCC
Q 028925 159 LFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 159 v~gG~~~~~~~~~~yd~~~~ 178 (202)
|+|+. ...+.+||+.+.
T Consensus 149 vVg~~---~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 149 VVGTS---DRKVLIYDLRNL 165 (323)
T ss_pred EEeec---CceEEEEEcccc
Confidence 55532 337899998653
No 214
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=44.12 E-value=1.2e+02 Score=21.98 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=43.8
Q ss_pred CcCCCCCceeeeEEEeCCCCCeEEcCCCC-CCceee-eeEEECC-E-EEEEcCccCCCCCCcceEEEEeCCCCeEEeccC
Q 028925 22 GYGMDGESLSSAEVYDPDTDKWNLIESLR-RPRWGC-FACSFDG-K-LYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKN 97 (202)
Q Consensus 22 G~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~-~~~~~~~-~-iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 97 (202)
|.+........+|.+|..+++|..+.--+ .....+ .+..+++ . ++++|..-+.- .....+++|+..+++-+.+.+
T Consensus 79 g~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTv-S~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 79 GPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTV-SKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred CCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceE-ccCCeEEEEEccCCceeEeee
Confidence 33334455789999999999986552111 112222 3344543 3 44455322211 134579999999998887764
Q ss_pred c
Q 028925 98 G 98 (202)
Q Consensus 98 ~ 98 (202)
.
T Consensus 158 ~ 158 (200)
T PF15525_consen 158 W 158 (200)
T ss_pred c
Confidence 3
No 215
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.98 E-value=1.3e+02 Score=22.39 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=37.8
Q ss_pred EEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCC-CCceeeeeEEECCEEEEEc
Q 028925 9 ACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLR-RPRWGCFACSFDGKLYVMG 69 (202)
Q Consensus 9 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~iy~~g 69 (202)
.+...+++||..-|... .+.+.++|+.+.+=..-.+++ ...++-..+.+++.+|.+.
T Consensus 50 GL~~~~g~i~esTG~yg----~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT 107 (262)
T COG3823 50 GLEYLDGHILESTGLYG----FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT 107 (262)
T ss_pred ceeeeCCEEEEeccccc----cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE
Confidence 45567889988877632 246889999866543333333 3445666778899999885
No 216
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.42 E-value=2e+02 Score=23.84 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=74.0
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCC---CeEEcCCCCCCceeeeeEEECCE-EEEEcCccCCCCCCcceEEEEeCCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTD---KWNLIESLRRPRWGCFACSFDGK-LYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~r~~~~~~~~~~~-iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
++.=+|.|+-+ ..+..+|+..+ .|+-+.. ++..-.+...+|+ +++++ . .+.+..|+.++
T Consensus 323 Dg~~~V~Gs~d------r~i~~wdlDgn~~~~W~gvr~---~~v~dlait~Dgk~vl~v~-~-------d~~i~l~~~e~ 385 (519)
T KOG0293|consen 323 DGFRFVTGSPD------RTIIMWDLDGNILGNWEGVRD---PKVHDLAITYDGKYVLLVT-V-------DKKIRLYNREA 385 (519)
T ss_pred CCceeEecCCC------CcEEEecCCcchhhccccccc---ceeEEEEEcCCCcEEEEEe-c-------ccceeeechhh
Confidence 67778887653 45677777655 4776654 5555555566665 55554 2 34577777665
Q ss_pred CeEEeccCccceeee-eEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeE--EEE-CCeEEEEcccCC
Q 028925 90 HTWCQMKNGCVMVTA-HAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRF--GIL-DGKLLLFSLEEE 165 (202)
Q Consensus 90 ~~W~~~~~~~~~~~~-~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~--~~~-~~~i~v~gG~~~ 165 (202)
..=..+-......++ ...-++++.++.= ....++.+|.+ .|..+. .-.+.....+.+ +.- .+.-||..|.
T Consensus 386 ~~dr~lise~~~its~~iS~d~k~~LvnL-~~qei~LWDl~--e~~lv~-kY~Ghkq~~fiIrSCFgg~~~~fiaSGS-- 459 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFSISKDGKLALVNL-QDQEIHLWDLE--ENKLVR-KYFGHKQGHFIIRSCFGGGNDKFIASGS-- 459 (519)
T ss_pred hhhhccccccCceeEEEEcCCCcEEEEEc-ccCeeEEeecc--hhhHHH-HhhcccccceEEEeccCCCCcceEEecC--
Confidence 443322111122222 2334667666632 45788899988 455443 111212222211 111 2224444332
Q ss_pred CCceeEEEeCCCC
Q 028925 166 PSYSTLLYDPNAA 178 (202)
Q Consensus 166 ~~~~~~~yd~~~~ 178 (202)
....+++|+..++
T Consensus 460 ED~kvyIWhr~sg 472 (519)
T KOG0293|consen 460 EDSKVYIWHRISG 472 (519)
T ss_pred CCceEEEEEccCC
Confidence 2236888888776
No 217
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=41.14 E-value=1.5e+02 Score=22.29 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=43.3
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEc--CCCCCCceeeeeE-EE---CCEEEEEcCccCCCCCCcceEEEE
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLI--ESLRRPRWGCFAC-SF---DGKLYVMGGRSSFTIGNSKFVDVY 85 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~r~~~~~~-~~---~~~iy~~gG~~~~~~~~~~~~~~y 85 (202)
..+++||.+|.. ..+|..|+.+..-+.+ +++..+....... -+ -++|.+++- ...-++.
T Consensus 36 pa~G~LYgl~~~-------g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~--------~GqNlR~ 100 (236)
T PF14339_consen 36 PANGQLYGLGST-------GRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSN--------TGQNLRL 100 (236)
T ss_pred cCCCCEEEEeCC-------CcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEcc--------CCcEEEE
Confidence 346788888542 4689999999998888 5565554333222 23 478998863 2346778
Q ss_pred eCCCCe
Q 028925 86 NPERHT 91 (202)
Q Consensus 86 d~~~~~ 91 (202)
+|.+..
T Consensus 101 npdtGa 106 (236)
T PF14339_consen 101 NPDTGA 106 (236)
T ss_pred CCCCCC
Confidence 887776
No 218
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=41.02 E-value=2.3e+02 Score=24.30 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=73.6
Q ss_pred CEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEe
Q 028925 15 GKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQ 94 (202)
Q Consensus 15 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~ 94 (202)
+.+++.|-.+ .++.++|..+++....-. .......+......++.+|.. ...+.++|..+.+-..
T Consensus 261 ~~~lvsgS~D------~t~rvWd~~sg~C~~~l~---gh~stv~~~~~~~~~~~sgs~------D~tVkVW~v~n~~~l~ 325 (537)
T KOG0274|consen 261 GDKLVSGSTD------KTERVWDCSTGECTHSLQ---GHTSSVRCLTIDPFLLVSGSR------DNTVKVWDVTNGACLN 325 (537)
T ss_pred CCEEEEEecC------CcEEeEecCCCcEEEEec---CCCceEEEEEccCceEeeccC------CceEEEEeccCcceEE
Confidence 4555554332 345666777776655532 222223333445555565543 3468899888666555
Q ss_pred ccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECC-eEEEEcccCCCCceeEEE
Q 028925 95 MKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDG-KLLLFSLEEEPSYSTLLY 173 (202)
Q Consensus 95 ~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~i~v~gG~~~~~~~~~~y 173 (202)
+-......-..+.+++.+.+.|. ....+-+||+.+.+--.. .... .........++ ..++-|... ..+.++
T Consensus 326 l~~~h~~~V~~v~~~~~~lvsgs-~d~~v~VW~~~~~~cl~s--l~gH--~~~V~sl~~~~~~~~~Sgs~D---~~IkvW 397 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLDEPLLVSGS-YDGTVKVWDPRTGKCLKS--LSGH--TGRVYSLIVDSENRLLSGSLD---TTIKVW 397 (537)
T ss_pred EeccccccEEEEEecCCEEEEEe-cCceEEEEEhhhceeeee--ecCC--cceEEEEEecCcceEEeeeec---cceEee
Confidence 43221111223445666666664 455888888884443332 1111 11222224555 555555433 368888
Q ss_pred eCCCC
Q 028925 174 DPNAA 178 (202)
Q Consensus 174 d~~~~ 178 (202)
|+++.
T Consensus 398 dl~~~ 402 (537)
T KOG0274|consen 398 DLRTK 402 (537)
T ss_pred cCCch
Confidence 88885
No 219
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=40.59 E-value=1.6e+02 Score=22.14 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=67.0
Q ss_pred EEECCEEEEEcCcCCCCCceeeeEEE-eCCCCCeEEcCCCCCC-c-eeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEe
Q 028925 11 AEVNGKIYAVGGYGMDGESLSSAEVY-DPDTDKWNLIESLRRP-R-WGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYN 86 (202)
Q Consensus 11 ~~~~~~iyv~GG~~~~~~~~~~~~~y-d~~t~~W~~~~~~~~~-r-~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd 86 (202)
..-++++++.. .............| +-.-.+|+.....+.. . .....+.. +|+|+++-... .. ......+.
T Consensus 115 ~~~~G~l~~~~-~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~---~~~~~~~S 189 (275)
T PF13088_consen 115 QLPDGRLIAPY-YHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTE-GN---DDIYISRS 189 (275)
T ss_dssp EECTTEEEEEE-EEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEEC-SS---TEEEEEEE
T ss_pred EecCCCEEEEE-eeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEcc-CC---CcEEEEEE
Confidence 33478888872 11111122333334 4445679888665322 3 23333333 77888875432 11 12233333
Q ss_pred CC-CCeEEecc----CccceeeeeEE-ECCEEEEEeCCC--CCeEE--EEeCCCCcEEEeccCCCCC--CCCCeeEEEE-
Q 028925 87 PE-RHTWCQMK----NGCVMVTAHAV-VGKKLFCMEWKN--QRKLT--IFDPEDNSWKMVPVPLTGS--SSIGFRFGIL- 153 (202)
Q Consensus 87 ~~-~~~W~~~~----~~~~~~~~~~~-~~~~iyv~Gg~~--~~~~~--~yd~~~~~W~~~~~~~~~~--~~~~~~~~~~- 153 (202)
.. -.+|+... +.+........ -+++++++.... ...+. +-.....+|.......... ......++..
T Consensus 190 ~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~ 269 (275)
T PF13088_consen 190 TDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLP 269 (275)
T ss_dssp SSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEE
T ss_pred CCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeC
Confidence 33 45799754 22222222222 366777776421 22233 2333477898764211111 1222334444
Q ss_pred CCeEEE
Q 028925 154 DGKLLL 159 (202)
Q Consensus 154 ~~~i~v 159 (202)
||+|||
T Consensus 270 dg~l~i 275 (275)
T PF13088_consen 270 DGKLYI 275 (275)
T ss_dssp TTEEEE
T ss_pred CCcCCC
Confidence 679886
No 220
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=40.53 E-value=1.8e+02 Score=22.86 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=73.1
Q ss_pred eeEEEeCCCCCe-EEcCC----CCCCceeeeeEEECCEEEEEcCc----cCCCCCCcceEEEEeCCCCeEEecc-C-ccc
Q 028925 32 SAEVYDPDTDKW-NLIES----LRRPRWGCFACSFDGKLYVMGGR----SSFTIGNSKFVDVYNPERHTWCQMK-N-GCV 100 (202)
Q Consensus 32 ~~~~yd~~t~~W-~~~~~----~~~~r~~~~~~~~~~~iy~~gG~----~~~~~~~~~~~~~yd~~~~~W~~~~-~-~~~ 100 (202)
.+..+|+.+..= +.+.+ .+..|.+=..+.-+|.||+-.-. ..........++++||. .+..++. . ...
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~ 164 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTI 164 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEe
Confidence 456667653332 44433 34556665566667888875332 11112234479999994 5555554 2 222
Q ss_pred eeeeeEEECC-EEEEEeCCCCCeEEEEeCCC--------CcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeE
Q 028925 101 MVTAHAVVGK-KLFCMEWKNQRKLTIFDPED--------NSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTL 171 (202)
Q Consensus 101 ~~~~~~~~~~-~iyv~Gg~~~~~~~~yd~~~--------~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~ 171 (202)
.+.-+...++ .+|+..- ..+.++.|+.+. +.+.... ..++ ..--..+--+|.|++..... +..+.
T Consensus 165 ~NGla~SpDg~tly~aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G--~PDG~~vDadG~lw~~a~~~--g~~v~ 238 (307)
T COG3386 165 PNGLAFSPDGKTLYVADT-PANRIHRYDLDPATGPIGGRRGFVDFD-EEPG--LPDGMAVDADGNLWVAAVWG--GGRVV 238 (307)
T ss_pred cCceEECCCCCEEEEEeC-CCCeEEEEecCcccCccCCcceEEEcc-CCCC--CCCceEEeCCCCEEEecccC--CceEE
Confidence 3333344455 7888852 357888887653 1122221 1111 11122334578888743221 23689
Q ss_pred EEeCCC
Q 028925 172 LYDPNA 177 (202)
Q Consensus 172 ~yd~~~ 177 (202)
+|+|+-
T Consensus 239 ~~~pdG 244 (307)
T COG3386 239 RFNPDG 244 (307)
T ss_pred EECCCC
Confidence 999994
No 221
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=40.16 E-value=2.3e+02 Score=24.07 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=35.1
Q ss_pred EEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEE-ECCeEEEEcccCCCCceeEEEeCCC
Q 028925 106 AVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGI-LDGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 106 ~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
...+..|++-=| ....+.+||....+-...-.-..| ..+++. .+|.+++.| .....+..||...
T Consensus 217 spsne~l~vsVG-~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~G~~L~aG---~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 217 SPSNEALLVSVG-YDKKINIYDIRSQASTDRLTYSHP----LSTVAFSECGTYLCAG---NSKGELIAYDMRS 281 (673)
T ss_pred cCCccceEEEec-ccceEEEeecccccccceeeecCC----cceeeecCCceEEEee---cCCceEEEEeccc
Confidence 334666666545 678899999886654443111111 122333 356666666 2233577777654
No 222
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.09 E-value=2e+02 Score=23.27 Aligned_cols=84 Identities=8% Similarity=0.086 Sum_probs=43.7
Q ss_pred ceEEEEeCCCCeEEe-ccCccceeeeeEEE-CCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeE
Q 028925 80 KFVDVYNPERHTWCQ-MKNGCVMVTAHAVV-GKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKL 157 (202)
Q Consensus 80 ~~~~~yd~~~~~W~~-~~~~~~~~~~~~~~-~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 157 (202)
+++..+|..+...-. +........+..+. +|+ |++.-...+.+.+||.++.+-.+.- +.++ ..-..+....+..
T Consensus 314 ktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~~~~cmk~~-~ah~--hfvt~lDfh~~~p 389 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLKNLQCMKTL-EAHE--HFVTSLDFHKTAP 389 (406)
T ss_pred ceEEEEeccCCeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEeccceeeecc-CCCc--ceeEEEecCCCCc
Confidence 567777776663211 11111122222222 333 3333246788999999888766653 2122 2223344567888
Q ss_pred EEEcccCCCC
Q 028925 158 LLFSLEEEPS 167 (202)
Q Consensus 158 ~v~gG~~~~~ 167 (202)
||+.|.....
T Consensus 390 ~VvTGsVdqt 399 (406)
T KOG0295|consen 390 YVVTGSVDQT 399 (406)
T ss_pred eEEeccccce
Confidence 9987765433
No 223
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=39.76 E-value=2e+02 Score=23.22 Aligned_cols=141 Identities=15% Similarity=0.065 Sum_probs=76.0
Q ss_pred eeeeEEEeCCCCCeE--EcCCCCCCce-eeee-EEECCEEEEEcCccCCCCCCcceEEEEeCCCC-----eEEeccCc-c
Q 028925 30 LSSAEVYDPDTDKWN--LIESLRRPRW-GCFA-CSFDGKLYVMGGRSSFTIGNSKFVDVYNPERH-----TWCQMKNG-C 99 (202)
Q Consensus 30 ~~~~~~yd~~t~~W~--~~~~~~~~r~-~~~~-~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~-~ 99 (202)
-..++++++.+..-+ .+-.-+.... ...+ ..-+++..++.-.... ....++..|.... .|..+.+. .
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~---~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT---SESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS---SEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc---cCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 457888888877543 2211122222 2222 2345554444332221 1267888998775 78887743 2
Q ss_pred ceeeeeEEECCEEEEEeC--CCCCeEEEEeCCCCc---EEE-eccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEE
Q 028925 100 VMVTAHAVVGKKLFCMEW--KNQRKLTIFDPEDNS---WKM-VPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLY 173 (202)
Q Consensus 100 ~~~~~~~~~~~~iyv~Gg--~~~~~~~~yd~~~~~---W~~-~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~y 173 (202)
.....+...++.+|+... .....+..++..+.. |.. +. +... ...-..+...++.|++.--.+. ...+.+|
T Consensus 278 ~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~-~~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDE-DVSLEDVSLFKDYLVLSYRENG-SSRLRVY 354 (414)
T ss_dssp S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SS-SEEEEEEEEETTEEEEEEEETT-EEEEEEE
T ss_pred ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCC-ceeEEEEEEECCEEEEEEEECC-ccEEEEE
Confidence 233334455889998852 234678888887665 674 43 2111 1223344466888887653322 2378999
Q ss_pred eCC
Q 028925 174 DPN 176 (202)
Q Consensus 174 d~~ 176 (202)
|+.
T Consensus 355 ~~~ 357 (414)
T PF02897_consen 355 DLD 357 (414)
T ss_dssp ETT
T ss_pred ECC
Confidence 999
No 224
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=39.73 E-value=45 Score=15.64 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=15.7
Q ss_pred EECCEEEEEeCCCCCeEEEEeCCCCc
Q 028925 107 VVGKKLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 107 ~~~~~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
..++.+|+.. ....++.+|.++.+
T Consensus 4 ~~~~~v~~~~--~~g~l~a~d~~~G~ 27 (33)
T smart00564 4 LSDGTVYVGS--TDGTLYALDAKTGE 27 (33)
T ss_pred EECCEEEEEc--CCCEEEEEEcccCc
Confidence 3455666653 46788888886654
No 225
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=39.61 E-value=12 Score=21.02 Aligned_cols=12 Identities=58% Similarity=1.226 Sum_probs=10.0
Q ss_pred EEEeCCCCCeEE
Q 028925 34 EVYDPDTDKWNL 45 (202)
Q Consensus 34 ~~yd~~t~~W~~ 45 (202)
..||++|++|.-
T Consensus 21 r~YD~~Tr~W~F 32 (55)
T PF07443_consen 21 RNYDPKTRKWNF 32 (55)
T ss_pred cccCccceeeee
Confidence 568999999963
No 226
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=38.80 E-value=1.7e+02 Score=22.19 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=54.9
Q ss_pred eEEEEeCCCCeEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeC----CCCcEEEeccCCCCCCCCCeeEEEECCe
Q 028925 81 FVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDP----EDNSWKMVPVPLTGSSSIGFRFGILDGK 156 (202)
Q Consensus 81 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~----~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 156 (202)
++....+..+.|.+-+..+ ++++|++.+.....+..|.. ....|.+.- ..+..-.+.+.++++|.
T Consensus 11 ~~~~~~~~~GsWmrDpl~~---------~~r~~~~~~~~~~~l~E~~~~~~~~~~~~~~~~--~lp~~~~gTg~VVynGs 79 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDPLPA---------DDRIYVMNYFDGLMLTEYTNLEDFKRGRKAEKY--RLPYSWDGTGHVVYNGS 79 (249)
T ss_pred EEEeeccccceeecCCCcc---------cCceEEeccccCceEEEeccHHHhhccCcceEE--eCCCCccccceEEEcce
Confidence 4566667778888755211 67888886555566666655 233344432 22333456677789999
Q ss_pred EEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 157 LLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 157 i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
+|.-.. ....+-.||.++.....|..+
T Consensus 80 ~yynk~---~t~~ivky~l~~~~~~~~~~l 106 (249)
T KOG3545|consen 80 LYYNKA---GTRNIIKYDLETRTVAGSAAL 106 (249)
T ss_pred EEeecc---CCcceEEEEeecceeeeeeec
Confidence 988652 234577888887422245554
No 227
>PF14830 Haemocyan_bet_s: Haemocyanin beta-sandwich; PDB: 1JS8_B 3QJO_A 1LNL_A.
Probab=38.52 E-value=31 Score=22.24 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=13.6
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCC
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPD 39 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~ 39 (202)
...|..+|+||..+=.-....+++||+.
T Consensus 34 ~~AG~F~vLGG~~EMpW~FdRlykydIT 61 (103)
T PF14830_consen 34 HKAGTFFVLGGEKEMPWAFDRLYKYDIT 61 (103)
T ss_dssp EEEEEEEE---TTS---B-SS-EEEE-H
T ss_pred eEccEEEEcCCCccCccccCccchhhHH
Confidence 3456899999975434456788999974
No 228
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=38.13 E-value=3e+02 Score=24.75 Aligned_cols=66 Identities=12% Similarity=0.222 Sum_probs=36.7
Q ss_pred eEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCC
Q 028925 58 ACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDN 131 (202)
Q Consensus 58 ~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~ 131 (202)
.+..++.+.+++|.. .++.+++..+.+-.+--+-. +..++.++.+.-|++-|...+.+++||....
T Consensus 379 l~vS~d~~~~~Sga~-------~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 379 LCVSSDSILLASGAG-------ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred EEeecCceeeeecCC-------CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 444566777776533 35777777655533321212 4444445544444443447788999997543
No 229
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=37.04 E-value=2.7e+02 Score=23.91 Aligned_cols=145 Identities=15% Similarity=0.236 Sum_probs=69.5
Q ss_pred EECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECC-EEEEEcCccCCCCCCcceEEEEeCCCC
Q 028925 12 EVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDG-KLYVMGGRSSFTIGNSKFVDVYNPERH 90 (202)
Q Consensus 12 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iy~~gG~~~~~~~~~~~~~~yd~~~~ 90 (202)
..++.+.|.|..+ ..+-+||+.+.+. +..+..--.......+++ ..++-|+.+ +.+.++|..+.
T Consensus 338 ~~~~~~lvsgs~d------~~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~~~~~~~Sgs~D-------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 338 QLDEPLLVSGSYD------GTVKVWDPRTGKC--LKSLSGHTGRVYSLIVDSENRLLSGSLD-------TTIKVWDLRTK 402 (537)
T ss_pred EecCCEEEEEecC------ceEEEEEhhhcee--eeeecCCcceEEEEEecCcceEEeeeec-------cceEeecCCch
Confidence 3456666666543 2577788875443 333322111122235566 455444433 46888888777
Q ss_pred e-EEeccCccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCce
Q 028925 91 T-WCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYS 169 (202)
Q Consensus 91 ~-W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~ 169 (202)
+ -...-.............+.+++-+. ..+.+..+|.++..-...-.- . ...+..+...+...++..+. ...
T Consensus 403 ~~c~~tl~~h~~~v~~l~~~~~~Lvs~~-aD~~Ik~WD~~~~~~~~~~~~-~--~~~~v~~l~~~~~~il~s~~---~~~ 475 (537)
T KOG0274|consen 403 RKCIHTLQGHTSLVSSLLLRDNFLVSSS-ADGTIKLWDAEEGECLRTLEG-R--HVGGVSALALGKEEILCSSD---DGS 475 (537)
T ss_pred hhhhhhhcCCcccccccccccceeEecc-ccccEEEeecccCceeeeecc-C--CcccEEEeecCcceEEEEec---CCe
Confidence 4 11110111111112234556665543 566888888887776665311 1 12333333333233333322 114
Q ss_pred eEEEeCCCC
Q 028925 170 TLLYDPNAA 178 (202)
Q Consensus 170 ~~~yd~~~~ 178 (202)
+..||..+.
T Consensus 476 ~~l~dl~~~ 484 (537)
T KOG0274|consen 476 VKLWDLRSG 484 (537)
T ss_pred eEEEecccC
Confidence 566666554
No 230
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=35.95 E-value=2.2e+02 Score=22.44 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=10.2
Q ss_pred eeeEEEeCCCCCeEEc
Q 028925 31 SSAEVYDPDTDKWNLI 46 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~ 46 (202)
+++..||+.+.+-+-+
T Consensus 122 ~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 122 KTVRLWDLRVKKCQGL 137 (311)
T ss_pred CeEEeeEecCCCCceE
Confidence 3677778876665433
No 231
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=35.92 E-value=1.6e+02 Score=24.39 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=36.7
Q ss_pred eeeeEEEeCCCCCeEEcCCCCCC---ceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeE
Q 028925 30 LSSAEVYDPDTDKWNLIESLRRP---RWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTW 92 (202)
Q Consensus 30 ~~~~~~yd~~t~~W~~~~~~~~~---r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W 92 (202)
..++.++|..+++-+.+..||.. ...-...+-+|++|+-=...+ ....-++.+||.+.+=
T Consensus 366 ~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~~---g~~~~IY~iDp~TatA 428 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTED---GSDPYIYKIDPATATA 428 (435)
T ss_pred cceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeecC---CCceeEEEEcCccccc
Confidence 46678899988887777666644 222223345888887321111 1124689999988763
No 232
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=35.51 E-value=2.3e+02 Score=22.57 Aligned_cols=136 Identities=12% Similarity=0.130 Sum_probs=63.6
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeE----E--ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc---Cccce
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFAC----S--FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK---NGCVM 101 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~----~--~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~ 101 (202)
..+..||..|-+...-+. |-.+|+.+ . -.++||+-|.+++ .+.+||-.+++.-+-- .....
T Consensus 238 p~~rlYdv~T~Qcfvsan---Pd~qht~ai~~V~Ys~t~~lYvTaSkDG-------~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSAN---PDDQHTGAITQVRYSSTGSLYVTASKDG-------AIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred CceeEEeccceeEeeecC---cccccccceeEEEecCCccEEEEeccCC-------cEEeeccccHHHHHHHHhhcCCce
Confidence 457788987655443333 22222222 1 2789999987653 5777887776533321 11122
Q ss_pred eeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEe--ccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCC
Q 028925 102 VTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMV--PVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNA 177 (202)
Q Consensus 102 ~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~ 177 (202)
..++.+-.+.=|++.......+..+.+.+++--.. +............++.....-||+--. +...++..||..+
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pD-Eas~slcsWdaRt 384 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPD-EASNSLCSWDART 384 (430)
T ss_pred eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccc-cccCceeeccccc
Confidence 23333334444444322455666666666553332 111111111122233334455554322 2234566676654
No 233
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=35.14 E-value=1.2e+02 Score=19.46 Aligned_cols=42 Identities=7% Similarity=0.025 Sum_probs=26.7
Q ss_pred eEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceeecccC
Q 028925 149 RFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSKIKP 190 (202)
Q Consensus 149 ~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~~p 190 (202)
+.+.-|+.||++|-.......|.-|+...++...|+..++..
T Consensus 12 ~sv~GG~Ev~Ll~~k~~kDikV~F~E~~~dG~~~WE~~a~f~ 53 (101)
T cd01178 12 CSVNGGEELFLTGKNFLKDSKVVFQEKGQDGEAQWEAEATID 53 (101)
T ss_pred eeecCCCEEEEEehhcCCCCEEEEEEeCCCCccceEEEEEeC
Confidence 344557899999865544457777765443233799885543
No 234
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=35.02 E-value=53 Score=15.13 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=15.2
Q ss_pred ccceEEEEECCEEEEEcCcC
Q 028925 5 RYDFACAEVNGKIYAVGGYG 24 (202)
Q Consensus 5 r~~~~~~~~~~~iyv~GG~~ 24 (202)
+.+....++|++..++|+.+
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred cEEeEEEEEcCCEEEEeCcc
Confidence 45566778899888888875
No 235
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=34.83 E-value=1.3e+02 Score=19.64 Aligned_cols=63 Identities=13% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCC-cEEEeccC------CCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCccee
Q 028925 120 QRKLTIFDPEDN-SWKMVPVP------LTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQT 185 (202)
Q Consensus 120 ~~~~~~yd~~~~-~W~~~~~~------~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~ 185 (202)
...+..||+.++ .|...... ...+.+..+.++..++.-.|+..-..++ +.|...+..-++|+.
T Consensus 10 rA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~~~~iINc~i~~~---~~y~kas~~FhQWrD 79 (111)
T cd01206 10 RAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGGTKAIINSTITPN---MTFTKTSQKFGQWAD 79 (111)
T ss_pred eeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecCcEEEEeccccCC---cceeecccccccccc
Confidence 456778888765 88877521 0122333444444444444444322222 345554432335654
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=34.22 E-value=2.5e+02 Score=22.66 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEeCCCCeE
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYNPERHTW 92 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W 92 (202)
+.++|+.+.. ..+-++|+.+++ .+...+........+.. +|+..+++.+. ...+.++|.++.+=
T Consensus 48 gr~~yv~~rd-------g~vsviD~~~~~--~v~~i~~G~~~~~i~~s~DG~~~~v~n~~------~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 48 GRYLYVANRD-------GTVSVIDLATGK--VVATIKVGGNPRGIAVSPDGKYVYVANYE------PGTVSVIDAETLEP 112 (369)
T ss_dssp SSEEEEEETT-------SEEEEEETTSSS--EEEEEE-SSEEEEEEE--TTTEEEEEEEE------TTEEEEEETTT--E
T ss_pred CCEEEEEcCC-------CeEEEEECCccc--EEEEEecCCCcceEEEcCCCCEEEEEecC------CCceeEeccccccc
Q ss_pred Eecc---------CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEccc
Q 028925 93 CQMK---------NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLE 163 (202)
Q Consensus 93 ~~~~---------~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~ 163 (202)
.+.- +..+...-........|++--.....++..|.....=......... +..+-.....+.=|++.+.
T Consensus 113 v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g--~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 113 VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG--RFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTSSEEEEEE
T ss_pred eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc--ccccccccCcccceeeecc
Q ss_pred CCCCceeEEEeCCCC
Q 028925 164 EEPSYSTLLYDPNAA 178 (202)
Q Consensus 164 ~~~~~~~~~yd~~~~ 178 (202)
.... .+-+.|.+++
T Consensus 191 ~~sn-~i~viD~~~~ 204 (369)
T PF02239_consen 191 NGSN-KIAVIDTKTG 204 (369)
T ss_dssp GGGT-EEEEEETTTT
T ss_pred cccc-eeEEEeeccc
No 237
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=34.12 E-value=2.7e+02 Score=23.05 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=56.1
Q ss_pred eeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECC-EEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccc-eeeeeEE
Q 028925 30 LSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDG-KLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCV-MVTAHAV 107 (202)
Q Consensus 30 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~~~~~ 107 (202)
..++|++|+.+++-.++..... ...+-.-.-+| +|+....+.+ ...++++|++..+=+++..... ...-...
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G-----~p~I~~~~~~g~~~~riT~~~~~~~~p~~S 334 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFG-INTSPSWSPDGSKIVFTSDRGG-----RPQIYLYDLEGSQVTRLTFSGGGNSNPVWS 334 (425)
T ss_pred CccEEEEcCCCCcceecccCCc-cccCccCCCCCCEEEEEeCCCC-----CcceEEECCCCCceeEeeccCCCCcCccCC
Confidence 3578999999887333322221 11122222344 4554433322 2379999999887777662221 1122334
Q ss_pred ECCEEEEEeCCC--CCeEEEEeCCCCc-EEEec
Q 028925 108 VGKKLFCMEWKN--QRKLTIFDPEDNS-WKMVP 137 (202)
Q Consensus 108 ~~~~iyv~Gg~~--~~~~~~yd~~~~~-W~~~~ 137 (202)
.+++.+++-+.. ...+..+|+.++. |+.+.
T Consensus 335 pdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 335 PDGDKIVFESSSGGQWDIDKNDLASGGKIRILT 367 (425)
T ss_pred CCCCEEEEEeccCCceeeEEeccCCCCcEEEcc
Confidence 455555553311 2568888887777 88886
No 238
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=33.88 E-value=2.5e+02 Score=22.50 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=50.2
Q ss_pred eEEEEeCC-----CCeEEeccCccceeeeeEEECCEEEEEeCCCCCeEEEE-eCCCC-----cEEEeccCCCCC----CC
Q 028925 81 FVDVYNPE-----RHTWCQMKNGCVMVTAHAVVGKKLFCMEWKNQRKLTIF-DPEDN-----SWKMVPVPLTGS----SS 145 (202)
Q Consensus 81 ~~~~yd~~-----~~~W~~~~~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~y-d~~~~-----~W~~~~~~~~~~----~~ 145 (202)
.+.+++.. .++++..........++.+..+.|||. ....++.| |.+.+ +-+.+....... ..
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~---~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~ 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVA---TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEe---CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc
Confidence 56665432 234555543222334445544448886 45567777 44322 444443111111 11
Q ss_pred CCeeEEE-ECCeEEEEcccCC----------------CCceeEEEeCCCCCCCcceee
Q 028925 146 IGFRFGI-LDGKLLLFSLEEE----------------PSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 146 ~~~~~~~-~~~~i~v~gG~~~----------------~~~~~~~yd~~~~~~~~W~~~ 186 (202)
....++. .+|+||+.-|... ....+++||+++. ..+.+
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~ 179 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVV 179 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEE
Confidence 1222222 4789999655211 0126899999886 66554
No 239
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=33.20 E-value=2.3e+02 Score=21.93 Aligned_cols=94 Identities=11% Similarity=0.097 Sum_probs=49.1
Q ss_pred CCEEEEE-cCccCCCC----CCcceEEEEeCCCCeEEecc--Cc----cceeee-eEEEC-------CEEEEEeCCCCCe
Q 028925 62 DGKLYVM-GGRSSFTI----GNSKFVDVYNPERHTWCQMK--NG----CVMVTA-HAVVG-------KKLFCMEWKNQRK 122 (202)
Q Consensus 62 ~~~iy~~-gG~~~~~~----~~~~~~~~yd~~~~~W~~~~--~~----~~~~~~-~~~~~-------~~iyv~Gg~~~~~ 122 (202)
.++||++ .|..+... .....+..||+.+++-.+.- |. +..... ..+.. +.+|+..- ....
T Consensus 11 ~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~-~~~g 89 (287)
T PF03022_consen 11 CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS-GGPG 89 (287)
T ss_dssp TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-TTCE
T ss_pred CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-CcCc
Confidence 6788888 35432221 23467899999999743321 11 111222 22222 46888863 3459
Q ss_pred EEEEeCCCCc-EEEeccCCCCCCCCCeeEEEECCeEE
Q 028925 123 LTIFDPEDNS-WKMVPVPLTGSSSIGFRFGILDGKLL 158 (202)
Q Consensus 123 ~~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~i~ 158 (202)
+.+||..+++ |+.+.....+ ........+++..+
T Consensus 90 lIV~dl~~~~s~Rv~~~~~~~--~p~~~~~~i~g~~~ 124 (287)
T PF03022_consen 90 LIVYDLATGKSWRVLHNSFSP--DPDAGPFTIGGESF 124 (287)
T ss_dssp EEEEETTTTEEEEEETCGCTT--S-SSEEEEETTEEE
T ss_pred EEEEEccCCcEEEEecCCcce--eccccceeccCceE
Confidence 9999999977 5555432222 22223334555555
No 240
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=33.14 E-value=1.7e+02 Score=20.28 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=46.8
Q ss_pred EEECCEEEEEcCcCCCCCceeeeEEEeCCCCCe-EEcCCCCCCc----eeeeeEEE-CCEEEEEcCccCCCCCCcceEEE
Q 028925 11 AEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKW-NLIESLRRPR----WGCFACSF-DGKLYVMGGRSSFTIGNSKFVDV 84 (202)
Q Consensus 11 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~r----~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~ 84 (202)
+.++|.+|=++-..... ....+..||+.+.+. +.++ +|... ....+..+ +++|.++--.... ..-++|+
T Consensus 2 V~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~-lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~---~~~~IWv 76 (164)
T PF07734_consen 2 VFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLP-LPFCNDDDDDSVSLSVVRGDCLCVLYQCDET---SKIEIWV 76 (164)
T ss_pred EEECCEEEeeEEecCCC-CceEEEEEeccccccCCEEC-CCCccCccCCEEEEEEecCCEEEEEEeccCC---ccEEEEE
Confidence 56788888886543221 112689999999999 5554 33222 23334333 7788887432211 1245665
Q ss_pred Ee---CCCCeEEecc
Q 028925 85 YN---PERHTWCQMK 96 (202)
Q Consensus 85 yd---~~~~~W~~~~ 96 (202)
-+ -...+|+++-
T Consensus 77 m~~~~~~~~SWtK~~ 91 (164)
T PF07734_consen 77 MKKYGYGKESWTKLF 91 (164)
T ss_pred EeeeccCcceEEEEE
Confidence 44 2377899864
No 241
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=32.88 E-value=62 Score=15.27 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=11.8
Q ss_pred cceEEEEE-CCEEEEEcC
Q 028925 6 YDFACAEV-NGKIYAVGG 22 (202)
Q Consensus 6 ~~~~~~~~-~~~iyv~GG 22 (202)
..|+++.. +++||..|-
T Consensus 8 ~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-TTEEEEEE-
T ss_pred CCEEEEEEcCCCEEEEcC
Confidence 34666655 789999984
No 242
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=32.64 E-value=3.2e+02 Score=23.48 Aligned_cols=86 Identities=9% Similarity=0.111 Sum_probs=43.7
Q ss_pred eEEEEeCCCCeEEecc----Ccccee-eeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEE--
Q 028925 81 FVDVYNPERHTWCQMK----NGCVMV-TAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGIL-- 153 (202)
Q Consensus 81 ~~~~yd~~~~~W~~~~----~~~~~~-~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~-- 153 (202)
+.-+|+...++-+++. |.+... ..+.......+++|- ..+.+..||..++.=+....+..+ ..+..
T Consensus 237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC-~DgSiiLyD~~~~~t~~~ka~~~P------~~iaWHp 309 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC-EDGSIILYDTTRGVTLLAKAEFIP------TLIAWHP 309 (545)
T ss_pred EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe-cCCeEEEEEcCCCeeeeeeecccc------eEEEEcC
Confidence 3445666555544443 222111 112223455566663 678999999877754433322222 22333
Q ss_pred CCeEEEEcccCCCCceeEEEeCC
Q 028925 154 DGKLLLFSLEEEPSYSTLLYDPN 176 (202)
Q Consensus 154 ~~~i~v~gG~~~~~~~~~~yd~~ 176 (202)
+|.|+++|+..+ .+..||..
T Consensus 310 ~gai~~V~s~qG---elQ~FD~A 329 (545)
T PF11768_consen 310 DGAIFVVGSEQG---ELQCFDMA 329 (545)
T ss_pred CCcEEEEEcCCc---eEEEEEee
Confidence 677777775432 34555543
No 243
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=31.56 E-value=3.3e+02 Score=23.27 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=22.6
Q ss_pred eEEECCEEEEEeCCCCCeEEEEeCCCCcEEEe
Q 028925 105 HAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMV 136 (202)
Q Consensus 105 ~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~ 136 (202)
-...+++-+++|| ....+.++|+..-+=+.-
T Consensus 472 kL~pdgrtLivGG-eastlsiWDLAapTprik 502 (705)
T KOG0639|consen 472 KLLPDGRTLIVGG-EASTLSIWDLAAPTPRIK 502 (705)
T ss_pred EecCCCceEEecc-ccceeeeeeccCCCcchh
Confidence 3455888888888 478888988877665544
No 244
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=31.43 E-value=4.5e+02 Score=24.80 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=82.1
Q ss_pred eeeeEEEeCCCCCeEEcCCCCCCceeeeeEE--E---CCE-EEEEcCccCCC----CCCcceEEEEeCCCC--eEEecc-
Q 028925 30 LSSAEVYDPDTDKWNLIESLRRPRWGCFACS--F---DGK-LYVMGGRSSFT----IGNSKFVDVYNPERH--TWCQMK- 96 (202)
Q Consensus 30 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~--~---~~~-iy~~gG~~~~~----~~~~~~~~~yd~~~~--~W~~~~- 96 (202)
...+.++|+.+++=...-++...-...+++. + +.. +..+|+..... .-....++.|+...+ +-+-+.
T Consensus 852 ~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~ 931 (1205)
T KOG1898|consen 852 VSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK 931 (1205)
T ss_pred cceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec
Confidence 4467888888776555544443322222222 2 222 45555543211 112334666664432 222222
Q ss_pred -CccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEcccCCCCceeEEEeC
Q 028925 97 -NGCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLEEEPSYSTLLYDP 175 (202)
Q Consensus 97 -~~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~~~~~~~~~~yd~ 175 (202)
..+....+.+-+.+.+++- .-+.+.+||...++-.+...... .+..=..+.....+|+| |....+-...+|++
T Consensus 932 T~~~~~v~Ai~~f~~~~Lag---vG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~iqt~~~RI~V--gD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 932 TEIPGPVGAICPFQGRVLAG---VGRFLRLYDLGKKKLLRKCELKF-IPNRISSIQTYGARIVV--GDIQESVHFVRYRR 1005 (1205)
T ss_pred cCCCccceEEeccCCEEEEe---cccEEEEeeCChHHHHhhhhhcc-CceEEEEEeecceEEEE--eeccceEEEEEEec
Confidence 3333445556667755543 45678899987766444321111 01212233345667777 55555556777888
Q ss_pred CCCCCCcceeecccCCceeeeEE
Q 028925 176 NAASGSEWQTSKIKPSGLCLCSV 198 (202)
Q Consensus 176 ~~~~~~~W~~~~~~p~~~~~~~~ 198 (202)
+.+ .--...+=|.+|...++
T Consensus 1006 ~~n---~l~~fadD~~pR~Vt~~ 1025 (1205)
T KOG1898|consen 1006 EDN---QLIVFADDPVPRHVTAL 1025 (1205)
T ss_pred CCC---eEEEEeCCCccceeeEE
Confidence 877 66666655666654433
No 245
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=31.29 E-value=3.4e+02 Score=23.27 Aligned_cols=132 Identities=19% Similarity=0.168 Sum_probs=65.5
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEE--CCEEEEEcCccCCCCCCcceEEEEeCCCCe
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSF--DGKLYVMGGRSSFTIGNSKFVDVYNPERHT 91 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~ 91 (202)
++...++||.+ ..+++|.+...+-.+...+...|...+.+.+ +++.++. |- ..+.+..||.+++.
T Consensus 454 ~~~~vaVGG~D------gkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~-~D------a~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 454 DGSEVAVGGQD------GKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA-GD------ASRKVVLYDVASRE 520 (603)
T ss_pred CCCEEEEeccc------ceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE-ec------cCCcEEEEEcccCc
Confidence 66777788864 2378888876664444334444544455544 4444444 32 34568888876654
Q ss_pred EEeccCccceeee----eE-EECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEccc
Q 028925 92 WCQMKNGCVMVTA----HA-VVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFSLE 163 (202)
Q Consensus 92 W~~~~~~~~~~~~----~~-~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~gG~ 163 (202)
=. .... ..+++ ++ ..+++++.. |+-...+.+|+.+.-.=.... .......--.+.-.++.-++-.|.
T Consensus 521 ~~-~~~w-~FHtakI~~~aWsP~n~~vAT-GSlDt~Viiysv~kP~~~i~i--knAH~~gVn~v~wlde~tvvSsG~ 592 (603)
T KOG0318|consen 521 VK-TNRW-AFHTAKINCVAWSPNNKLVAT-GSLDTNVIIYSVKKPAKHIII--KNAHLGGVNSVAWLDESTVVSSGQ 592 (603)
T ss_pred ee-ccee-eeeeeeEEEEEeCCCceEEEe-ccccceEEEEEccChhhheEe--ccccccCceeEEEecCceEEeccC
Confidence 21 1000 01111 11 224555544 446678888886544333221 111112223344456655555443
No 246
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=31.15 E-value=2.9e+02 Score=22.42 Aligned_cols=105 Identities=12% Similarity=0.289 Sum_probs=51.6
Q ss_pred EEECCEEEEEcCcCCCCCceeeeEEEeCCCC--CeEEcCCCCCCceeeeeEEE-CCEEEEEcCccCCCCCCcceEEEEeC
Q 028925 11 AEVNGKIYAVGGYGMDGESLSSAEVYDPDTD--KWNLIESLRRPRWGCFACSF-DGKLYVMGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 11 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~r~~~~~~~~-~~~iy~~gG~~~~~~~~~~~~~~yd~ 87 (202)
..+++.+.+-|++. ..+.+|+..++ +|....+...-- =+..+ .+.|+++|-.+ ..+|+|..
T Consensus 114 FshdgtlLATGdms------G~v~v~~~stg~~~~~~~~e~~die---Wl~WHp~a~illAG~~D-------GsvWmw~i 177 (399)
T KOG0296|consen 114 FSHDGTLLATGDMS------GKVLVFKVSTGGEQWKLDQEVEDIE---WLKWHPRAHILLAGSTD-------GSVWMWQI 177 (399)
T ss_pred EccCceEEEecCCC------ccEEEEEcccCceEEEeecccCceE---EEEecccccEEEeecCC-------CcEEEEEC
Confidence 34567777777764 23455554444 354431111000 00111 34566666433 45888887
Q ss_pred CCCeEEeccCccc--eeeeeEEECCEEEEEeCCCCCeEEEEeCCCCc
Q 028925 88 ERHTWCQMKNGCV--MVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 88 ~~~~W~~~~~~~~--~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
....-.++-+... ...+-...+|+-.+.|- ....+.++|+++.+
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGY-DDGTIIVWNPKTGQ 223 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEe-cCceEEEEecCCCc
Confidence 6643233221111 11222344566665553 56778888888775
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=29.86 E-value=2.4e+02 Score=25.12 Aligned_cols=49 Identities=27% Similarity=0.460 Sum_probs=29.4
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCc--eeeeeEEECCEEEEEcCcc
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR--WGCFACSFDGKLYVMGGRS 72 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r--~~~~~~~~~~~iy~~gG~~ 72 (202)
+.++.+..| +.+++||+..++ .+.++.... .+..+-+.+|+.|..|+.+
T Consensus 24 GsqL~lAAg--------~rlliyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 24 GTQLILAAG--------SRLLVYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred CceEEEecC--------CEEEEEeCCCcc--cccccccccceEEEEEEccCCceeccCCCc
Confidence 345555554 468999988654 233333333 3333345699999888764
No 248
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=29.75 E-value=49 Score=22.03 Aligned_cols=17 Identities=18% Similarity=0.513 Sum_probs=14.5
Q ss_pred eeeEEEeCCCCCeEEcC
Q 028925 31 SSAEVYDPDTDKWNLIE 47 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~ 47 (202)
-.+|.||..+++|++..
T Consensus 29 v~vY~f~~~~~~W~K~~ 45 (122)
T PF06058_consen 29 VVVYKFDHETNEWEKTD 45 (122)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred EEEEeecCCCCcEeecC
Confidence 56899999999998864
No 249
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=28.70 E-value=2.9e+02 Score=21.69 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=67.0
Q ss_pred CCeEEcCCCCCCc-eeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-Cc-cceeeeeEEECCEEEEEeC
Q 028925 41 DKWNLIESLRRPR-WGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NG-CVMVTAHAVVGKKLFCMEW 117 (202)
Q Consensus 41 ~~W~~~~~~~~~r-~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~-~~~~~~~~~~~~~iyv~Gg 117 (202)
|.|+.++...... ..-+.+.-+.+.+++|++. ++..-|-..++|.+.. +. +...++..+.+.+=.+.|
T Consensus 32 ~p~~~velp~~s~~l~ia~~~~g~~gwlVg~rg--------tiletdd~g~tw~qal~~~gr~~f~sv~f~~~egw~vG- 102 (339)
T COG4447 32 NPWTDVELPTLSPTLDIAFTESGSHGWLVGGRG--------TILETDDGGITWAQALDFLGRHAFHSVSFLGMEGWIVG- 102 (339)
T ss_pred CcceeeeccccCcccceeEeecCcceEEEcCcc--------eEEEecCCcccchhhhchhhhhheeeeeeecccccccC-
Confidence 3466554322222 2223334567899999764 4555566678898876 22 333445455555455554
Q ss_pred CCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEEC-CeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 118 KNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILD-GKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 118 ~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
...-++.-+-...+|.+++..... .-.-..+...| ++-+++|-. + .++.=+-..+ .|+.+
T Consensus 103 -e~sqll~T~DgGqsWARi~~~e~~-eg~~~sI~f~d~q~g~m~gd~---G-ail~T~DgGk---~Wk~l 163 (339)
T COG4447 103 -EPSQLLHTTDGGQSWARIPLSEKL-EGFPDSITFLDDQRGEMLGDQ---G-AILKTTDGGK---NWKAL 163 (339)
T ss_pred -CcceEEEecCCCcchhhchhhcCC-CCCcceeEEecchhhhhhccc---c-eEEEecCCcc---cHhHh
Confidence 344555666677889998722111 12223444554 445555521 1 3333233333 68887
No 250
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=28.65 E-value=3.3e+02 Score=22.72 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=34.4
Q ss_pred CCeEEEEeCCCCcEEEec-cCCCCCCCCCeeEEEECCeEEEEc-ccCCCCceeEEEeCCCC
Q 028925 120 QRKLTIFDPEDNSWKMVP-VPLTGSSSIGFRFGILDGKLLLFS-LEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 120 ~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~i~v~g-G~~~~~~~~~~yd~~~~ 178 (202)
...+.++|..+.+...+. .|.......+-...+.++++|+-= ........|+.+|+.+.
T Consensus 366 ~~~laI~d~~~kt~t~V~glP~~~is~~~~~~~ve~G~aYi~Vtt~~g~~~~IY~iDp~Ta 426 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVTGLPADLISGFGNAPYVENGKAYIPVTTEDGSDPYIYKIDPATA 426 (435)
T ss_pred cceEEEEEccCceeEEeccCChhhccccccceEeeCCEEEEEEeecCCCceeEEEEcCccc
Confidence 356778898888877765 222211222223445688888732 22221247999999886
No 251
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=28.61 E-value=91 Score=15.84 Aligned_cols=19 Identities=37% Similarity=0.595 Sum_probs=14.5
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDT 40 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t 40 (202)
++++|++-| +..|+||..+
T Consensus 9 ~~~~yfFkg--------~~yw~~~~~~ 27 (45)
T smart00120 9 NGKTYFFKG--------DKYWRFDPKR 27 (45)
T ss_pred CCeEEEEeC--------CEEEEEcCCc
Confidence 669999976 3589998754
No 252
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=28.21 E-value=2.3e+02 Score=20.33 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=35.2
Q ss_pred CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCC
Q 028925 14 NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERH 90 (202)
Q Consensus 14 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~ 90 (202)
++++.++-|... ..+..||.+ ...+-.++....+...-.-+|++++++|..+. ...+.+||..+.
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~----~G~l~~wd~~~~ 135 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNL----NGDLEFWDVRKK 135 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCc---ccEeEeecCCCceEEEECCCCCEEEEEEccCC----CcEEEEEECCCC
Confidence 456666645321 257778875 22333333222222222347888888886532 246889998743
No 253
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=27.93 E-value=4.2e+02 Score=23.25 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=66.3
Q ss_pred eeeeEEEeCCCCCeEEcCCCCCCceeeeeEEE---CCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-Cccceeeee
Q 028925 30 LSSAEVYDPDTDKWNLIESLRRPRWGCFACSF---DGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NGCVMVTAH 105 (202)
Q Consensus 30 ~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~ 105 (202)
.+++.++++....=+ .++...+.....+.+ .-.++|.. ...+.+||.....-.+.- +..+....+
T Consensus 545 ~~~VliHQLSK~~sQ--~PF~kskG~vq~v~FHPs~p~lfVaT---------q~~vRiYdL~kqelvKkL~tg~kwiS~m 613 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQ--SPFRKSKGLVQRVKFHPSKPYLFVAT---------QRSVRIYDLSKQELVKKLLTGSKWISSM 613 (733)
T ss_pred cceEEEEeccccccc--CchhhcCCceeEEEecCCCceEEEEe---------ccceEEEehhHHHHHHHHhcCCeeeeee
Confidence 467888988754322 333333333444443 33466553 356899998764322211 444444555
Q ss_pred EEE--CCEEEEEeCCCCCeEEEEeCCCC--cEEEecc------CCCCCCCC-CeeEEEECCeEEEEcccC
Q 028925 106 AVV--GKKLFCMEWKNQRKLTIFDPEDN--SWKMVPV------PLTGSSSI-GFRFGILDGKLLLFSLEE 164 (202)
Q Consensus 106 ~~~--~~~iyv~Gg~~~~~~~~yd~~~~--~W~~~~~------~~~~~~~~-~~~~~~~~~~i~v~gG~~ 164 (202)
.+. +++|++ |+ ..+.+..||.+-+ -|+.+.. ......++ -++.+.-|+.++|+-|..
T Consensus 614 sihp~GDnli~-gs-~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 614 SIHPNGDNLIL-GS-YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred eecCCCCeEEE-ec-CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 444 356654 43 6788888887655 5776631 11111222 334455678888887643
No 254
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=27.56 E-value=47 Score=15.67 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=10.0
Q ss_pred ceEEEEECCEEEEEcCcC
Q 028925 7 DFACAEVNGKIYAVGGYG 24 (202)
Q Consensus 7 ~~~~~~~~~~iyv~GG~~ 24 (202)
+...+++++++-.+||.+
T Consensus 6 H~K~~vvD~~~a~vGg~n 23 (28)
T PF00614_consen 6 HQKFVVVDDRVAFVGGAN 23 (28)
T ss_dssp ---EEEETTTEEEEE---
T ss_pred eeEEEEEcCCEEEECcee
Confidence 445677888888888875
No 255
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=27.33 E-value=3.2e+02 Score=21.74 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=54.5
Q ss_pred cceEEEEeCCCCeEEecc----------CccceeeeeEEECCEEEEEe------------CCCCCeEEEEeCCCCcEEEe
Q 028925 79 SKFVDVYNPERHTWCQMK----------NGCVMVTAHAVVGKKLFCME------------WKNQRKLTIFDPEDNSWKMV 136 (202)
Q Consensus 79 ~~~~~~yd~~~~~W~~~~----------~~~~~~~~~~~~~~~iyv~G------------g~~~~~~~~yd~~~~~W~~~ 136 (202)
..++.+||. +|.++. |..-.......++++|||.= |.....|.+||+.-+--+++
T Consensus 161 ~g~IDVFd~---~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~ 237 (336)
T TIGR03118 161 QGRIDVFKG---SFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRV 237 (336)
T ss_pred CCceEEecC---ccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEe
Confidence 457888865 344432 11122344577889999872 12245789999999888888
Q ss_pred ccCCCCCCCCCeeEE-----EECCeEEEEcccCCCCceeEEEeCCCC
Q 028925 137 PVPLTGSSSIGFRFG-----ILDGKLLLFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 137 ~~~~~~~~~~~~~~~-----~~~~~i~v~gG~~~~~~~~~~yd~~~~ 178 (202)
+.-..--.-++.+++ ...+.|+| |.-.+ ..|-.||+.++
T Consensus 238 as~g~LNaPWG~a~APa~FG~~sg~lLV--GNFGD-G~InaFD~~sG 281 (336)
T TIGR03118 238 ASSGRLNAPWGLAIAPESFGSLSGALLV--GNFGD-GTINAYDPQSG 281 (336)
T ss_pred ccCCcccCCceeeeChhhhCCCCCCeEE--eecCC-ceeEEecCCCC
Confidence 622111113344432 23577776 22222 26888998876
No 256
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=27.30 E-value=3.1e+02 Score=21.60 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=7.3
Q ss_pred ceEEEEeCCCCe
Q 028925 80 KFVDVYNPERHT 91 (202)
Q Consensus 80 ~~~~~yd~~~~~ 91 (202)
+++..+|....+
T Consensus 122 ~tvrLWDlR~~~ 133 (311)
T KOG1446|consen 122 KTVRLWDLRVKK 133 (311)
T ss_pred CeEEeeEecCCC
Confidence 457777766444
No 257
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.12 E-value=4.7e+02 Score=23.63 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=35.2
Q ss_pred EEEEECCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEE-EcCccCCCCCCcceEEEEeC
Q 028925 9 ACAEVNGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYV-MGGRSSFTIGNSKFVDVYNP 87 (202)
Q Consensus 9 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~-~gG~~~~~~~~~~~~~~yd~ 87 (202)
+.++.++++.++.|.+ .++-+||..|.+..+ .++.. .-+++..++|..|+ .|+.+ ..+.+||.
T Consensus 378 sl~vS~d~~~~~Sga~------~SikiWn~~t~kciR--Ti~~~-y~l~~~Fvpgd~~Iv~G~k~-------Gel~vfdl 441 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAG------ESIKIWNRDTLKCIR--TITCG-YILASKFVPGDRYIVLGTKN-------GELQVFDL 441 (888)
T ss_pred EEEeecCceeeeecCC------CcEEEEEccCcceeE--Eeccc-cEEEEEecCCCceEEEeccC-------CceEEEEe
Confidence 3445567777776643 246667776544322 12222 33344445555455 45443 45788887
Q ss_pred CCCe
Q 028925 88 ERHT 91 (202)
Q Consensus 88 ~~~~ 91 (202)
.+..
T Consensus 442 aS~~ 445 (888)
T KOG0306|consen 442 ASAS 445 (888)
T ss_pred ehhh
Confidence 6543
No 258
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=26.68 E-value=4.1e+02 Score=22.83 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=15.1
Q ss_pred CCEEEEEe-CCCCCeEEEEeCCCC
Q 028925 109 GKKLFCME-WKNQRKLTIFDPEDN 131 (202)
Q Consensus 109 ~~~iyv~G-g~~~~~~~~yd~~~~ 131 (202)
++-|.++| |+-.++++++|..+.
T Consensus 323 g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 323 GNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCEEEEeecCCCCCceEEEeccch
Confidence 34455556 445689999998763
No 259
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.00 E-value=98 Score=15.36 Aligned_cols=25 Identities=16% Similarity=0.411 Sum_probs=15.1
Q ss_pred EEEEEeCCCCCeEEEEeCCCCc--EEEec
Q 028925 111 KLFCMEWKNQRKLTIFDPEDNS--WKMVP 137 (202)
Q Consensus 111 ~iyv~Gg~~~~~~~~yd~~~~~--W~~~~ 137 (202)
.||+. .....++.+|.++.+ |+.-.
T Consensus 2 ~v~~~--~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVG--TPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEE--TTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEe--CCCCEEEEEECCCCCEEEeeeC
Confidence 44544 356677777776665 66653
No 260
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=25.62 E-value=5.6e+02 Score=24.01 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=77.6
Q ss_pred CEEEEEcC-cCCC-CC-c-eeeeEEEeCCC-CCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCC
Q 028925 15 GKIYAVGG-YGMD-GE-S-LSSAEVYDPDT-DKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPER 89 (202)
Q Consensus 15 ~~iyv~GG-~~~~-~~-~-~~~~~~yd~~t-~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~ 89 (202)
+..|++|- .... +. + ...+.+|.... ++-+.++.+...-.--+.+.++|++...= ...+..|+-.+
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~I---------n~~vrLye~t~ 857 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGI---------NQSVRLYEWTT 857 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEec---------CcEEEEEEccc
Confidence 57788873 2211 11 1 23444444433 66777766544434455667899987631 13466776544
Q ss_pred CeEEecc-C--ccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCeEEEEc
Q 028925 90 HTWCQMK-N--GCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGKLLLFS 161 (202)
Q Consensus 90 ~~W~~~~-~--~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i~v~g 161 (202)
++=-++. . .+.......+.++.|++..=-.+-.+..|+...+...+++....+ ++..++..+++..|+.+
T Consensus 858 ~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p--~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 858 ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNP--NWMTAVEILDDDTYLGA 930 (1096)
T ss_pred cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCc--cceeeEEEecCceEEee
Confidence 4211111 1 111122234557888876422244667789888899999865555 67777778888888754
No 261
>PF09816 EAF: RNA polymerase II transcription elongation factor; InterPro: IPR019194 This entry represents the N-terminal domain of ELL-associated factor (Eaf) proteins, which act as transcriptional transactivators of ELL and ELL2 RNA Polymerase II (Pol II) transcriptional elongation factors [, , , ]. Eaf proteins form a stable heterodimer complex with ELL proteins to facilitate the binding of RNA polymerase II to activate transcription elongation. ELL and EAF1 are components of Cajal bodies, which have a role in leukemogenesis []. EAF1 also has the capacity to interact with ELL1 and ELL2. The N terminus of approx 120 of EAF1 has a region of high serine, aspartic acid, and glutamic acid residues [, ].
Probab=25.15 E-value=1.4e+02 Score=19.33 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=18.3
Q ss_pred EEEEcCcCCCCCceeeeEEEeCCCCCeE
Q 028925 17 IYAVGGYGMDGESLSSAEVYDPDTDKWN 44 (202)
Q Consensus 17 iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 44 (202)
-|++-|.........-+.+||+.++++.
T Consensus 65 ~~~f~G~~~~~~~~ecVLifD~~~~~f~ 92 (109)
T PF09816_consen 65 TYVFKGSQRPSKEKECVLIFDPETGEFV 92 (109)
T ss_pred cEEEEeccCCCCCcEEEEEEECCCCEEE
Confidence 4777664323333566888999988774
No 262
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.66 E-value=3.5e+02 Score=21.33 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=51.5
Q ss_pred CccccceEEEEE--CCEEEEEcCcCCCCCceeeeEEEeCCCCCeEEcCCCCCCc--eeeeeEEECCEEEEEcCccCCCCC
Q 028925 2 NVARYDFACAEV--NGKIYAVGGYGMDGESLSSAEVYDPDTDKWNLIESLRRPR--WGCFACSFDGKLYVMGGRSSFTIG 77 (202)
Q Consensus 2 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~r--~~~~~~~~~~~iy~~gG~~~~~~~ 77 (202)
|.|--+|.+++. +..+.+|+-+. -.-+.+||+.+.+=...-..+..| ++|.+..-+|+++...=. +.. .
T Consensus 2 ~lP~RgH~~a~~p~~~~avafaRRP-----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEn-d~~-~ 74 (305)
T PF07433_consen 2 PLPARGHGVAAHPTRPEAVAFARRP-----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEN-DYE-T 74 (305)
T ss_pred CCCccccceeeCCCCCeEEEEEeCC-----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecc-ccC-C
Confidence 445456666666 46788887542 245789999988754332224444 557777777765444222 211 1
Q ss_pred CcceEEEEeCCCCeEEecc
Q 028925 78 NSKFVDVYNPERHTWCQMK 96 (202)
Q Consensus 78 ~~~~~~~yd~~~~~W~~~~ 96 (202)
....+-+||.. ++..++.
T Consensus 75 g~G~IgVyd~~-~~~~ri~ 92 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRIG 92 (305)
T ss_pred CcEEEEEEECc-CCcEEEe
Confidence 34567899987 5555554
No 263
>TIGR02594 conserved hypothetical protein TIGR02594. Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.
Probab=24.42 E-value=1.1e+02 Score=20.62 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=13.6
Q ss_pred CeEEEEcccCCCCceeEEE
Q 028925 155 GKLLLFSLEEEPSYSTLLY 173 (202)
Q Consensus 155 ~~i~v~gG~~~~~~~~~~y 173 (202)
+.|+++||++.+.-.+-.|
T Consensus 101 g~i~~lgGNq~~~V~~~~~ 119 (129)
T TIGR02594 101 GTIIVLGGNQGDRVREALY 119 (129)
T ss_pred CEEEEeeCCCCCeEEEEEE
Confidence 4899999988765444444
No 264
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=23.90 E-value=3.4e+02 Score=20.93 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=60.9
Q ss_pred eeeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEeccCccceeee-eEEEC
Q 028925 31 SSAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMKNGCVMVTA-HAVVG 109 (202)
Q Consensus 31 ~~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~~-~~~~~ 109 (202)
+.+..+|..|.+=..-=.++.+....- ...+|+|..+. .-..+..+|+.+-.--+--.+|....+ +...+
T Consensus 165 ~tVRLWD~rTgt~v~sL~~~s~VtSlE-vs~dG~ilTia--------~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~ 235 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEFNSPVTSLE-VSQDGRILTIA--------YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPK 235 (334)
T ss_pred CceEEEEeccCcEEEEEecCCCCccee-eccCCCEEEEe--------cCceeEEeccccccceeeccCccccccccccCC
Confidence 456777887765322212233322211 23466666552 112455566554332111133433333 33446
Q ss_pred CEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEE-EECCeEEEEcccC
Q 028925 110 KKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFG-ILDGKLLLFSLEE 164 (202)
Q Consensus 110 ~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~i~v~gG~~ 164 (202)
..+||+|| ....++.||..++.=...- ..+....-+++- .-+|.+|..|.+.
T Consensus 236 k~~fVaGg-ed~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 236 KEFFVAGG-EDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred CceEEecC-cceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCC
Confidence 68999987 6778889998776533331 111111111211 2489999998543
No 265
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=23.75 E-value=3.7e+02 Score=26.87 Aligned_cols=46 Identities=15% Similarity=0.334 Sum_probs=26.7
Q ss_pred ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc-CccceeeeeEEECCEEEEEe
Q 028925 61 FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK-NGCVMVTAHAVVGKKLFCME 116 (202)
Q Consensus 61 ~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~iyv~G 116 (202)
.+||+|..|-. .++-.|... +.|.+++ |.+. .+-++-+++.++..|
T Consensus 496 ~sGKvYYaGn~--------t~~Gl~e~G-~nWmEL~l~~~I-Vq~SVG~D~~~~~~~ 542 (3738)
T KOG1428|consen 496 RSGKVYYAGNG--------TRFGLFETG-NNWMELCLPEPI-VQISVGIDTIMFRSG 542 (3738)
T ss_pred cCccEEEecCc--------cEEeEEccC-CceEEecCCCce-EEEEeccchhheeec
Confidence 48999987632 345566553 8899998 4333 233334444444443
No 266
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.47 E-value=3.4e+02 Score=20.77 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=27.2
Q ss_pred CeeEEEECCeEEEEcccCCCCceeEEEeCCCCCCCcceeecccCCceeeeEE
Q 028925 147 GFRFGILDGKLLLFSLEEEPSYSTLLYDPNAASGSEWQTSKIKPSGLCLCSV 198 (202)
Q Consensus 147 ~~~~~~~~~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~~~~p~~~~~~~~ 198 (202)
++++ --+|.|||.-- ++..+..+||.++ +=-.--.+|.++..|+.
T Consensus 216 Gm~I-D~eG~L~Va~~---ng~~V~~~dp~tG---K~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 216 GMTI-DTEGNLYVATF---NGGTVQKVDPTTG---KILLEIKLPTPQITSCC 260 (310)
T ss_pred cceE-ccCCcEEEEEe---cCcEEEEECCCCC---cEEEEEEcCCCceEEEE
Confidence 4443 33788998541 2337899999997 43333456666664443
No 267
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=22.86 E-value=3.8e+02 Score=21.01 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=28.5
Q ss_pred eeeeeEEECCEEEEEcCccCCCCCCcceEEEEeCCCC---eEEeccCc------cceeeeeEEECCEEEEEe
Q 028925 54 WGCFACSFDGKLYVMGGRSSFTIGNSKFVDVYNPERH---TWCQMKNG------CVMVTAHAVVGKKLFCME 116 (202)
Q Consensus 54 ~~~~~~~~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~------~~~~~~~~~~~~~iyv~G 116 (202)
.-+-+++++|+||.+- .++..+|....+ -|..+.+. +...--+.+-++.|||-+
T Consensus 55 ELSELv~FngkLys~D---------DrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs 117 (291)
T PF06079_consen 55 ELSELVVFNGKLYSFD---------DRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGS 117 (291)
T ss_dssp -EEEEEEETTEEEEEE---------TTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEEETTEEEEE-
T ss_pred eeeeeeeECCEEeeee---------CCCceEEEEeCCceeceEEEeCCCCCccccccceeeEEeCCeeeecc
Confidence 3455778899999983 234445544444 25555421 111222577799999754
No 268
>PRK11408 hypothetical protein; Provisional
Probab=22.68 E-value=1.5e+02 Score=20.50 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=23.7
Q ss_pred ECCEEEEEcCccCCCCCCcceEEEEeCCCCeEEecc
Q 028925 61 FDGKLYVMGGRSSFTIGNSKFVDVYNPERHTWCQMK 96 (202)
Q Consensus 61 ~~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~W~~~~ 96 (202)
++|.+-|-||.-+. ....|+-|.|.+.+|+.+.
T Consensus 31 iGG~FAiNgG~lg~---~~G~v~Y~aPDtL~WE~l~ 63 (145)
T PRK11408 31 IGGFFALNGGGLGE---DVGEVYYFAPDTLKWESLE 63 (145)
T ss_pred ccceEEeccCccCC---CCCeEEEeCCCccceeccC
Confidence 46666555554332 3568999999999999987
No 269
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=22.08 E-value=2.1e+02 Score=18.11 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=18.7
Q ss_pred eeEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEE
Q 028925 32 SAEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVM 68 (202)
Q Consensus 32 ~~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~ 68 (202)
.-+.||+.|.+-...+. ........+..-+|.||+.
T Consensus 65 Hg~~Fd~~tG~~~~~p~-~~~l~~y~v~v~~g~v~v~ 100 (106)
T PRK09965 65 HAASFCLRTGKALCLPA-TDPLRTYPVHVEGGDIFID 100 (106)
T ss_pred CCCEEEcCCCCeeCCCC-CCCcceEeEEEECCEEEEE
Confidence 45678887776432221 1122223334458888874
No 270
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=21.77 E-value=1.6e+02 Score=18.88 Aligned_cols=34 Identities=12% Similarity=-0.141 Sum_probs=18.0
Q ss_pred eEEEeCCCCCeEEcCCCCCCceeeeeEEECCEEEEE
Q 028925 33 AEVYDPDTDKWNLIESLRRPRWGCFACSFDGKLYVM 68 (202)
Q Consensus 33 ~~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy~~ 68 (202)
-++||+.|.+....+. .+....-+-+-+|.||+-
T Consensus 74 ~~~Fdl~TG~~~~~~~--~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 74 KQRFRLSDGLCMEDEQ--FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred CCEEECCCcccCCCCC--ccEeeEeEEEECCEEEEe
Confidence 4668888876543222 122222233458888863
No 271
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.58 E-value=4.6e+02 Score=21.51 Aligned_cols=144 Identities=16% Similarity=0.185 Sum_probs=64.7
Q ss_pred EEEEEcCcCCCCCceeeeEEEeCCCC--CeEEcCC------CCCCceeeeeEEECC---EEEEEcCccCCCCCCcceEEE
Q 028925 16 KIYAVGGYGMDGESLSSAEVYDPDTD--KWNLIES------LRRPRWGCFACSFDG---KLYVMGGRSSFTIGNSKFVDV 84 (202)
Q Consensus 16 ~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~------~~~~r~~~~~~~~~~---~iy~~gG~~~~~~~~~~~~~~ 84 (202)
.|..+||.. ..+.+.+||+... .|+.-.. |..|..-..+..+.+ +-++-+- ....+-.
T Consensus 162 ~Iva~GGke----~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-------~~hqvR~ 230 (412)
T KOG3881|consen 162 YIVATGGKE----NINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-------RYHQVRL 230 (412)
T ss_pred ceEecCchh----cccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-------cceeEEE
Confidence 566667752 1345666776643 4654321 223333333333333 2222111 1346888
Q ss_pred EeCCCCeEEecc-C---ccceeeeeEEECCEEEEEeCCCCCeEEEEeCCCCcEEEec-cCCCCCCCCCeeEEEECC-eEE
Q 028925 85 YNPERHTWCQMK-N---GCVMVTAHAVVGKKLFCMEWKNQRKLTIFDPEDNSWKMVP-VPLTGSSSIGFRFGILDG-KLL 158 (202)
Q Consensus 85 yd~~~~~W~~~~-~---~~~~~~~~~~~~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~-~~~~~~~~~~~~~~~~~~-~i~ 158 (202)
||+..++=.... + .+....+..--++.||+. +....+..||..+..---+. ....+..+ .+..+.+ +++
T Consensus 231 YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~g--n~~g~l~~FD~r~~kl~g~~~kg~tGsir---sih~hp~~~~l 305 (412)
T KOG3881|consen 231 YDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTG--NTKGQLAKFDLRGGKLLGCGLKGITGSIR---SIHCHPTHPVL 305 (412)
T ss_pred ecCcccCcceeEeccccCcceeeeecCCCcEEEEe--cccchhheecccCceeeccccCCccCCcc---eEEEcCCCceE
Confidence 998755311111 1 111111111123345543 46778889998776644442 11111111 2233443 455
Q ss_pred EEcccCCCCceeEEEeCCCC
Q 028925 159 LFSLEEEPSYSTLLYDPNAA 178 (202)
Q Consensus 159 v~gG~~~~~~~~~~yd~~~~ 178 (202)
..+|-. ..+.+||.+++
T Consensus 306 as~GLD---RyvRIhD~ktr 322 (412)
T KOG3881|consen 306 ASCGLD---RYVRIHDIKTR 322 (412)
T ss_pred Eeeccc---eeEEEeecccc
Confidence 544421 14666776663
No 272
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=21.48 E-value=1.4e+02 Score=19.58 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=13.6
Q ss_pred eeEEEeCCCCCCCcceeeccc
Q 028925 169 STLLYDPNAASGSEWQTSKIK 189 (202)
Q Consensus 169 ~~~~yd~~~~~~~~W~~~~~~ 189 (202)
.++.||+.++ .|...+.-
T Consensus 10 ~Vm~~d~~tk---~W~P~~~~ 27 (111)
T cd01207 10 SVMVYDDSNK---KWVPAGGG 27 (111)
T ss_pred EeeEEcCCCC---cEEcCCCC
Confidence 5788888888 88877543
No 273
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=21.12 E-value=3.9e+02 Score=21.14 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=35.8
Q ss_pred EEEEECCEEEEEc----CcCC-CC---CceeeeEEEeCCCCCeEEcCCC---CC----Cc----eeeeeE---EECCEEE
Q 028925 9 ACAEVNGKIYAVG----GYGM-DG---ESLSSAEVYDPDTDKWNLIESL---RR----PR----WGCFAC---SFDGKLY 66 (202)
Q Consensus 9 ~~~~~~~~iyv~G----G~~~-~~---~~~~~~~~yd~~t~~W~~~~~~---~~----~r----~~~~~~---~~~~~iy 66 (202)
+...+++++|+.- +... .+ .....+++-|-.-.+|+..+.. +. .. ..+... .-++.||
T Consensus 99 ~~I~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~~~~~~~~~~~~g~~~~~~~fq~~a~~~~dgyVY 178 (316)
T PF13810_consen 99 DGISVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVPGTIRPNSPFHPGFNQGNWNFQMAAFVKDDGYVY 178 (316)
T ss_pred ceEEECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCCCcccccccccCCccccccccccccccCCCCEEE
Confidence 4557788888874 1111 10 1135677777778899988721 11 10 012222 2588999
Q ss_pred EEcCc
Q 028925 67 VMGGR 71 (202)
Q Consensus 67 ~~gG~ 71 (202)
++|-.
T Consensus 179 v~gt~ 183 (316)
T PF13810_consen 179 VYGTP 183 (316)
T ss_pred EEeCC
Confidence 99864
No 274
>PTZ00334 trans-sialidase; Provisional
Probab=20.77 E-value=6.4e+02 Score=22.99 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=35.3
Q ss_pred eEEEEeCCCCcEEEeccCCCCCCCCCeeEEEEC-CeEEEEcccCCCCceeEEEeCCCCCCCcceee
Q 028925 122 KLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILD-GKLLLFSLEEEPSYSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 122 ~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~i~v~gG~~~~~~~~~~yd~~~~~~~~W~~~ 186 (202)
.+.+|..++..|....... +.......++-.+ ++|+++-........|++-.-... +|++.
T Consensus 288 slIiYS~d~g~W~ls~g~s-~~gC~~P~I~EWe~gkLlM~t~C~dG~RrVYES~DmG~---tWtEA 349 (780)
T PTZ00334 288 SLIIYSSATESGNLSKGMS-ADGCSDPSVVEWKEGKLMMMTACDDGRRRVYESGDKGD---SWTEA 349 (780)
T ss_pred EEEEEecCCCCeEEcCCCC-CCCCCCCEEEEEcCCeEEEEEEeCCCCEEEEEECCCCC---ChhhC
Confidence 5678887777897654332 3235555677775 899987654332223444322233 67774
No 275
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=20.34 E-value=6.1e+02 Score=22.48 Aligned_cols=92 Identities=12% Similarity=0.259 Sum_probs=45.9
Q ss_pred eeEEEeCCCCC-eEEcCCCCCCceeeeeEEE---CCEEEEEcCccCCCCCCcceEEEEeCCCCe------EEecc----C
Q 028925 32 SAEVYDPDTDK-WNLIESLRRPRWGCFACSF---DGKLYVMGGRSSFTIGNSKFVDVYNPERHT------WCQMK----N 97 (202)
Q Consensus 32 ~~~~yd~~t~~-W~~~~~~~~~r~~~~~~~~---~~~iy~~gG~~~~~~~~~~~~~~yd~~~~~------W~~~~----~ 97 (202)
.+-++++..+- | .+.-+...+.+..+.++ +..+++-||.+ +.+.+||..+.. ...++ .
T Consensus 96 TVK~W~~~~~~~~-c~stir~H~DYVkcla~~ak~~~lvaSgGLD-------~~IflWDin~~~~~l~~s~n~~t~~sl~ 167 (735)
T KOG0308|consen 96 TVKVWNAHKDNTF-CMSTIRTHKDYVKCLAYIAKNNELVASGGLD-------RKIFLWDINTGTATLVASFNNVTVNSLG 167 (735)
T ss_pred eEEEeecccCcch-hHhhhhcccchheeeeecccCceeEEecCCC-------ccEEEEEccCcchhhhhhccccccccCC
Confidence 34555555432 2 11123334455444443 56677777764 346666655442 11122 1
Q ss_pred -ccceeeeeEEE--CCEEEEEeCCCCCeEEEEeCCCCc
Q 028925 98 -GCVMVTAHAVV--GKKLFCMEWKNQRKLTIFDPEDNS 132 (202)
Q Consensus 98 -~~~~~~~~~~~--~~~iyv~Gg~~~~~~~~yd~~~~~ 132 (202)
.++..-.+... .+.+++.|| ..+.+..||+.+++
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGg-tek~lr~wDprt~~ 204 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGG-TEKDLRLWDPRTCK 204 (735)
T ss_pred CCCccceeeeecCCcceEEEecC-cccceEEecccccc
Confidence 22211112222 334666665 67899999998775
No 276
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=20.31 E-value=4.4e+02 Score=20.85 Aligned_cols=14 Identities=21% Similarity=0.288 Sum_probs=10.1
Q ss_pred eeeEEEeCCCCCeE
Q 028925 31 SSAEVYDPDTDKWN 44 (202)
Q Consensus 31 ~~~~~yd~~t~~W~ 44 (202)
+.+..||.++.+-.
T Consensus 112 k~v~~wD~~tG~~~ 125 (338)
T KOG0265|consen 112 KTVRGWDAETGKRI 125 (338)
T ss_pred ceEEEEecccceee
Confidence 56788888877653
No 277
>COG4334 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.20 E-value=1.1e+02 Score=19.93 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=12.4
Q ss_pred EEEECCEEEEEcCcC
Q 028925 10 CAEVNGKIYAVGGYG 24 (202)
Q Consensus 10 ~~~~~~~iyv~GG~~ 24 (202)
++.+++.|||.|+..
T Consensus 41 ~v~vDgdLyVrgy~G 55 (131)
T COG4334 41 FVYVDGDLYVRGYRG 55 (131)
T ss_pred EEEECCceEEeecCc
Confidence 567899999999864
No 278
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.06 E-value=4.5e+02 Score=20.79 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=44.2
Q ss_pred CCEEEEEeCCCCCeEEEEeCCCCcEEEeccCCCCCCCCCeeEEEECCe-EEEEcccCCCC-ceeEEEeCCCCCCCcceee
Q 028925 109 GKKLFCMEWKNQRKLTIFDPEDNSWKMVPVPLTGSSSIGFRFGILDGK-LLLFSLEEEPS-YSTLLYDPNAASGSEWQTS 186 (202)
Q Consensus 109 ~~~iyv~Gg~~~~~~~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-i~v~gG~~~~~-~~~~~yd~~~~~~~~W~~~ 186 (202)
...+.+|.-.--.-..++|+.+.+=...-.+.+...-+++++...||+ +|..-...+.+ ..+=+||... ..+++
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~----~~~ri 91 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR----GYRRI 91 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC----CcEEE
Confidence 456666653333566788998877443322445544556666665554 55544433333 3788999984 46666
Q ss_pred cc
Q 028925 187 KI 188 (202)
Q Consensus 187 ~~ 188 (202)
.+
T Consensus 92 ~E 93 (305)
T PF07433_consen 92 GE 93 (305)
T ss_pred eE
Confidence 43
Done!