BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028928
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
 pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
           Complex With Nadh And Oxamate
          Length = 331

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 150 NLRMAHTVHKVSSLLGGVFFIADDVFPETP 179
           NLR    VH VS+++ G++ I DDVF   P
Sbjct: 265 NLR---RVHPVSTMIKGLYGIKDDVFLSVP 291


>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
           Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
           Phenyl)methyl)propanedioic Acid
 pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
           Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
           Phenyl)methyl)propanedioic Acid
 pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
           Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
           Phenyl)methyl)propanedioic Acid
 pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
           Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
           Phenyl)methyl)propanedioic Acid
          Length = 337

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 150 NLRMAHTVHKVSSLLGGVFFIADDVFPETP 179
           NLR    VH VS+++ G++ I DDVF   P
Sbjct: 265 NLR---RVHPVSTMIKGLYGIKDDVFLSVP 291


>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
 pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
          Length = 331

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 151 LRMAHTVHKVSSLLGGVFFIADDVFPETP 179
           ++  H VH VS+L+ G+  + D+VF   P
Sbjct: 263 IKNMHKVHPVSTLVQGMHGVKDEVFLSVP 291


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.135    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,457,449
Number of Sequences: 62578
Number of extensions: 184534
Number of successful extensions: 527
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 5
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)