BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028928
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei
brucei GN=ESAG8 PE=2 SV=1
Length = 630
Score = 35.0 bits (79), Expect = 0.36, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 3 YCLHVSRRAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLY 62
+C + W+ PSC R I G + HLL +A+V L G R +++T
Sbjct: 31 FCTACVVQRWRC-PSCQRRIGGRRKANPHLLREIADVTMELKRYRKG----RSGIDVTQM 85
Query: 63 ANSLVGVGVTSSLYHSSRGKLRKYLRWADYAMIATATVCLSR-----ALRD-ENPKMLMA 116
A L G GVT+S R + K RW I + C S ALRD E + L
Sbjct: 86 ARKLGGGGVTTSSEIFRRLEGSKNGRWK----ILNLSGCGSELQDLTALRDLEALEDLDL 141
Query: 117 ASALALPIQPLMVSAVHTGMMEVAFAKRALND 148
+ L ++ LMV + ++ + +ND
Sbjct: 142 SECANLELRELMVVLTLRNLRKLRMKRTMVND 173
>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma
equiperdum GN=ESAG8C PE=2 SV=1
Length = 630
Score = 33.9 bits (76), Expect = 0.68, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 16 PSCLRPIRGCIHGDLHLLERVANVLTSLPFIALGLQTPRKNLNMTLYANSLVGVGVTSSL 75
PSC R I G + HLL +A V L G R +++T A L G GVT+S
Sbjct: 43 PSCQRRIGGRRKANPHLLREIAEVTMELKRYRKG----RSGIDVTQMARKLGGGGVTTSS 98
Query: 76 YHSSRGKLRKYLRWADYAMIATATVCLSR-----ALRD-ENPKMLMAASALALPIQPLMV 129
R + K RW I + C S ALRD E + L + L ++ LMV
Sbjct: 99 EIFRRLEGSKNGRWK----ILNLSGCGSELQDLTALRDLEALEDLDLSECANLELRELMV 154
Query: 130 SAVHTGMMEVAFAKRALND 148
+ ++ + +ND
Sbjct: 155 VLTLRNLRKLRMKRTMVND 173
>sp|Q8IY49|PAQRA_HUMAN Monocyte to macrophage differentiation factor 2 OS=Homo sapiens
GN=MMD2 PE=1 SV=2
Length = 270
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 20/128 (15%)
Query: 81 GKLRKYLRWADYAMIATATV-----------CLSRALRDENPKMLMAASALALPIQPLMV 129
G ++RW + M + T+ C+ + PK A LP + +V
Sbjct: 129 GPWASHMRWLVWIMASVGTIYVFFFHERTGSCVQFLRGEACPK----AGTACLPARYKLV 184
Query: 130 SAVHTGMMEVAFAKRALNDPNLR--MAHTVHKVSSLLGGVFFIADDVFPETPYLHAAWHL 187
+ +M A L+ PN V LG VFF +D P+ HA WHL
Sbjct: 185 ELLCYVVMGFFPALVILSMPNTEGIWELVTGGVFYCLGMVFFKSDG---RIPFAHAIWHL 241
Query: 188 AAAVGVGT 195
A G GT
Sbjct: 242 FVAFGAGT 249
>sp|Q8R189|PAQRA_MOUSE Monocyte to macrophage differentiation factor 2 OS=Mus musculus
GN=Mmd2 PE=2 SV=1
Length = 247
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 164 LGGVFFIADDVFPETPYLHAAWHLAAAVGVGT 195
LG VFF +D P+ HA WHL A G GT
Sbjct: 198 LGMVFFKSDG---RIPFAHAIWHLFVAFGAGT 226
>sp|Q7CPQ1|NLPI_SALTY Lipoprotein NlpI OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + A R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNSAWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|Q8XG77|NLPI_SALTI Lipoprotein NlpI OS=Salmonella typhi GN=nlpI PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + A R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNSAWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|Q57JI4|NLPI_SALCH Lipoprotein NlpI OS=Salmonella choleraesuis (strain SC-B67) GN=nlpI
PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + A R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNSAWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|P0AFB4|NLPI_SHIFL Lipoprotein NlpI OS=Shigella flexneri GN=nlpI PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|P0AFB1|NLPI_ECOLI Lipoprotein NlpI OS=Escherichia coli (strain K12) GN=nlpI PE=1 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|P0AFB2|NLPI_ECOL6 Lipoprotein NlpI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nlpI PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|Q0TCU6|NLPI_ECOL5 Lipoprotein NlpI OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
GN=nlpI PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|D5D1H3|NLPI_ECOKI Lipoprotein NlpI OS=Escherichia coli O18:K1:H7 (strain IHE3034 /
ExPEC) GN=nlpI PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|A1AG68|NLPI_ECOK1 Lipoprotein NlpI OS=Escherichia coli O1:K1 / APEC GN=nlpI PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|B1XGX5|NLPI_ECODH Lipoprotein NlpI OS=Escherichia coli (strain K12 / DH10B) GN=nlpI
PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|C4ZSQ4|NLPI_ECOBW Lipoprotein NlpI OS=Escherichia coli (strain K12 / MC4100 / BW2952)
GN=nlpI PE=2 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|C6EH62|NLPI_ECOBD Lipoprotein NlpI OS=Escherichia coli (strain B / BL21-DE3) GN=nlpI
PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|E4P9W4|NLPI_ECO8N Lipoprotein NlpI OS=Escherichia coli O83:H1 (strain NRG 857C /
AIEC) GN=nlpI PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|P0AFB3|NLPI_ECO57 Lipoprotein NlpI OS=Escherichia coli O157:H7 GN=nlpI PE=2 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|B7NDE9|NLPI_ECOLU Lipoprotein NlpI OS=Escherichia coli O17:K52:H18 (strain UMN026 /
ExPEC) GN=nlpI PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALNDPN 150
RAL D
Sbjct: 53 SRALTDDE 60
>sp|Q31W42|NLPI_SHIBS Lipoprotein NlpI OS=Shigella boydii serotype 4 (strain Sb227)
GN=nlpI PE=3 SV=1
Length = 294
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 83 LRKYLRWADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFA 142
++ +LRW A T C + + R + LA+P+QP + V ME A
Sbjct: 1 MKPFLRWCFVATALTLAGCSNTSWR--------KSEVLAVPLQPTLQQEVILARMEQILA 52
Query: 143 KRALND 148
RAL D
Sbjct: 53 SRALTD 58
>sp|Q47XB8|HISX1_COLP3 Histidinol dehydrogenase 1 OS=Colwellia psychrerythraea (strain 34H
/ ATCC BAA-681) GN=hisD1 PE=3 SV=1
Length = 434
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 90 ADYAMIATATVCLSRALRDENPKMLMAASALALPIQPLMVSAVHTGMMEVAFAKRALNDP 149
AD A+++T + ++++ K ++A L + +S + +VA AK AL D
Sbjct: 26 ADSALLSTQVANILSQVKNQGDKAILA---LTEQFDGIALSTLSVSSAQVAQAKLALTDK 82
Query: 150 NLRMAHTVHK 159
L+ HT +K
Sbjct: 83 RLKAIHTAYK 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,759,349
Number of Sequences: 539616
Number of extensions: 2438274
Number of successful extensions: 7332
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7330
Number of HSP's gapped (non-prelim): 24
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)