Query 028928
Match_columns 201
No_of_seqs 115 out of 1109
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 07:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_B Photosystem I P700 chlo 7.6 5.5E+02 0.019 24.5 5.4 70 10-80 74-158 (740)
2 1jb0_A Photosystem I P700 chlo 6.6 3.2E+02 0.011 26.2 3.2 69 10-80 101-182 (755)
3 1t07_A Hypothetical UPF0269 pr 6.3 1.4E+02 0.0048 21.3 0.5 9 6-14 35-43 (94)
4 1xs8_A UPF0269 protein YGGX; h 6.2 1.4E+02 0.0047 21.2 0.4 9 6-14 33-41 (91)
5 1s4k_A Putative cytoplasmic pr 6.0 1.4E+02 0.0048 22.2 0.4 17 7-23 30-46 (120)
6 2ls2_A High affinity copper up 6.2 1.8E+02 0.006 15.7 0.0 18 61-78 6-23 (26)
7 3msq_A Putative ubiquinone bio 4.1 2.9E+02 0.01 22.2 1.1 10 181-190 125-134 (224)
8 2o5g_B CAM, smooth muscle myos 3.6 78 0.0027 17.3 -1.9 16 8-23 2-17 (26)
9 1qtx_B Protein (RS20); calmodu 3.5 64 0.0022 17.6 -2.3 14 9-22 1-14 (26)
10 3kb4_A ALR8543 protein; alpha- 2.8 4.6E+02 0.016 21.1 1.1 10 181-190 119-128 (225)
No 1
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 3pcq_B* 2o01_B* 2wsc_B* 2wse_B* 2wsf_B* 3lw5_B*
Probab=7.59 E-value=5.5e+02 Score=24.46 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=49.9
Q ss_pred HhhhhCCCCCCCcccccCCCCCchhhHHHHHhHH------------HHHH---HhcCCchhHHHHHHHHHHHHHHHHHHh
Q 028928 10 RAWQQRPSCLRPIRGCIHGDLHLLERVANVLTSL------------PFIA---LGLQTPRKNLNMTLYANSLVGVGVTSS 74 (201)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ee~~N~~TH~------------i~li---~~~~~~~~~~~~~vy~~sli~l~~~St 74 (201)
.+|-+||-..||+--.. .|....+|..|+.+-+ ++=. .+..+..+.-...+++.-+..+++...
T Consensus 74 e~Wl~dP~~i~P~Ah~V-WdP~~GQ~~l~a~~~gg~~~~v~It~SG~fq~W~t~Gi~t~~~Ly~~ai~~li~a~l~LfaG 152 (740)
T 1jb0_B 74 EQWVQDPVNTRPIAHAI-WDPQFGKAAVDAFTQAGASNPVDIAYSGVYHWWYTIGMRTNGDLYQGAIFLLILASLALFAG 152 (740)
T ss_dssp HHHHHCTTTCCCEEEEC-CCTTCCHHHHHHHSCTTCSSCEEECCSCHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCcccCCccchhh-cccccchHHhhcccccCCCcceeEecccHhHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999987654 4445667888884332 2211 222455667778888888899999999
Q ss_pred hhhccc
Q 028928 75 LYHSSR 80 (201)
Q Consensus 75 lYH~~~ 80 (201)
-+|..+
T Consensus 153 wlH~hp 158 (740)
T 1jb0_B 153 WLHLQP 158 (740)
T ss_dssp HHTTSG
T ss_pred Hhhccc
Confidence 999764
No 2
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.29.1.1 PDB: 3pcq_A* 2o01_A* 2wsc_A* 2wse_A* 2wsf_A* 3lw5_A*
Probab=6.59 E-value=3.2e+02 Score=26.16 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=47.1
Q ss_pred HhhhhCCCCCCCcccccCCCCCchhhHHHH----------HhHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHhhh
Q 028928 10 RAWQQRPSCLRPIRGCIHGDLHLLERVANV----------LTSLPFIA---LGLQTPRKNLNMTLYANSLVGVGVTSSLY 76 (201)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ee~~N~----------~TH~i~li---~~~~~~~~~~~~~vy~~sli~l~~~StlY 76 (201)
.+|-+||-..||+--..= ....+|..|+ +|.+++=. .+..+..+.-...+++.-+.++++...-+
T Consensus 101 e~Wl~dP~~i~P~Aq~VW--P~~GQ~ilna~~gg~~~gi~ItSG~fq~Wra~Gitt~~~Ly~~ai~~li~a~l~L~aGw~ 178 (755)
T 1jb0_A 101 EAWLADPTGIKPSAQVVW--PIVGQGILNGDVGGGFHGIQITSGLFQLWRASGITNEFQLYCTAIGGLVMAGLMLFAGWF 178 (755)
T ss_dssp HHHHHCTTTSCCEECCCC--CCTTGGGGSEEEETTEEEEECCSCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCccccCccccccc--ccccHHHHhccccCCCCcceecccHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999875442 2345677777 55555432 23355566777778888777777777777
Q ss_pred hccc
Q 028928 77 HSSR 80 (201)
Q Consensus 77 H~~~ 80 (201)
|..+
T Consensus 179 H~hk 182 (755)
T 1jb0_A 179 HYHK 182 (755)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7543
No 3
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=6.29 E-value=1.4e+02 Score=21.25 Aligned_cols=9 Identities=56% Similarity=1.236 Sum_probs=7.0
Q ss_pred hhhHHhhhh
Q 028928 6 HVSRRAWQQ 14 (201)
Q Consensus 6 ~~~~~~~~~ 14 (201)
+||+.|||+
T Consensus 35 ~VSkeAW~~ 43 (94)
T 1t07_A 35 NVSRKAWDE 43 (94)
T ss_dssp HCBHHHHHH
T ss_pred HHhHHHHHH
Confidence 588888875
No 4
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=6.23 E-value=1.4e+02 Score=21.20 Aligned_cols=9 Identities=44% Similarity=1.007 Sum_probs=7.0
Q ss_pred hhhHHhhhh
Q 028928 6 HVSRRAWQQ 14 (201)
Q Consensus 6 ~~~~~~~~~ 14 (201)
+||+.|||+
T Consensus 33 ~VSk~AW~~ 41 (91)
T 1xs8_A 33 EISKDAWAQ 41 (91)
T ss_dssp TCBHHHHHH
T ss_pred HHhHHHHHH
Confidence 578888875
No 5
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=5.96 E-value=1.4e+02 Score=22.19 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=12.8
Q ss_pred hhHHhhhhCCCCCCCcc
Q 028928 7 VSRRAWQQRPSCLRPIR 23 (201)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (201)
+|+|.|||=-+--|++-
T Consensus 30 vs~rtWQqWE~G~~~IP 46 (120)
T 1s4k_A 30 NNSATWQRWEAGDIPIS 46 (120)
T ss_dssp CCHHHHHHHHHTSSCCC
T ss_pred CCHHHHHHHHCCCCCCC
Confidence 79999999766555554
No 6
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=6.20 E-value=1.8e+02 Score=15.68 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 028928 61 LYANSLVGVGVTSSLYHS 78 (201)
Q Consensus 61 vy~~sli~l~~~StlYH~ 78 (201)
-+..|++.+|+.+.+|-.
T Consensus 6 ~~v~Sci~ifll~~~YE~ 23 (26)
T 2ls2_A 6 EMAGAFVAVFLLAMFYEG 23 (26)
Confidence 456778888888887754
No 7
>3msq_A Putative ubiquinone biosynthesis protein; COQ4 superfamily, structural genomics, joint center for STRU genomics, JCSG; 2.85A {Nostoc punctiforme}
Probab=4.09 E-value=2.9e+02 Score=22.19 Aligned_cols=10 Identities=30% Similarity=0.617 Sum_probs=8.1
Q ss_pred hhhHHHHHHH
Q 028928 181 LHAAWHLAAA 190 (201)
Q Consensus 181 ~H~IWHlfV~ 190 (201)
.|++||+..-
T Consensus 125 ~HD~~HvLtG 134 (224)
T 3msq_A 125 THDIYHVVAG 134 (224)
T ss_dssp HHHHHHHHHT
T ss_pred chhhhhhccC
Confidence 6999998753
No 8
>2o5g_B CAM, smooth muscle myosin light chain kinase peptide; protein-peptide complex, metal binding protein; 1.08A {Gallus gallus}
Probab=3.60 E-value=78 Score=17.30 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=10.5
Q ss_pred hHHhhhhCCCCCCCcc
Q 028928 8 SRRAWQQRPSCLRPIR 23 (201)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (201)
-||-||.---.+|+.+
T Consensus 2 ~rrkWqKtgnAv~Al~ 17 (26)
T 2o5g_B 2 ARRKWQKTGHAVRAIG 17 (26)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5788887665555544
No 9
>1qtx_B Protein (RS20); calmodulin, calcium binding, helix-loop-helix, signaling, complex (calcium- binding protein/peptide), signaling protein; 1.65A {Escherichia coli} PDB: 1qs7_B* 1vrk_B*
Probab=3.50 E-value=64 Score=17.62 Aligned_cols=14 Identities=43% Similarity=0.873 Sum_probs=7.4
Q ss_pred HHhhhhCCCCCCCc
Q 028928 9 RRAWQQRPSCLRPI 22 (201)
Q Consensus 9 ~~~~~~~~~~~~~~ 22 (201)
||-||.---..|+.
T Consensus 1 rrkWqKtgnav~Al 14 (26)
T 1qtx_B 1 RRKWQKTGHAVRAI 14 (26)
T ss_pred CchHHHHhHHHHHH
Confidence 56676654444443
No 10
>3kb4_A ALR8543 protein; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG, function; HET: GR0; 2.41A {Nostoc SP}
Probab=2.79 E-value=4.6e+02 Score=21.11 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=8.1
Q ss_pred hhhHHHHHHH
Q 028928 181 LHAAWHLAAA 190 (201)
Q Consensus 181 ~H~IWHlfV~ 190 (201)
.|++||++.-
T Consensus 119 ~HD~~HvltG 128 (225)
T 3kb4_A 119 THDIWHVVTG 128 (225)
T ss_dssp SHHHHHHHHT
T ss_pred hhhHHHHhhC
Confidence 6999998753
Done!