Query 028928
Match_columns 201
No_of_seqs 115 out of 1109
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 07:16:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w98b1 a.74.1.1 (B:228-357) G 7.6 1.1E+02 0.0077 21.3 2.3 33 71-103 58-95 (130)
2 d1dcea2 b.7.4.1 (A:242-350) Ra 6.3 37 0.0027 23.1 -0.8 11 1-11 3-13 (109)
3 d1t07a_ d.279.1.1 (A:) Hypothe 5.7 76 0.0055 20.3 0.5 9 6-14 35-43 (81)
4 d1rkla_ f.23.30.1 (A:) Oligosa 4.7 2.2E+02 0.016 14.9 2.0 20 58-80 10-29 (36)
5 d1xs8a_ d.279.1.1 (A:) Hypothe 4.6 94 0.0068 20.3 0.4 9 6-14 33-41 (91)
6 d1jb0b_ f.29.1.1 (B:) Apoprote 3.9 7E+02 0.051 21.6 5.9 70 10-80 74-158 (739)
7 d1v7ba1 a.4.1.9 (A:1-74) Trans 3.8 2.3E+02 0.017 16.2 2.0 10 72-81 38-47 (74)
8 d2e74h1 f.23.27.1 (H:3-29) Pet 3.6 3E+02 0.022 13.4 1.9 10 133-142 3-12 (27)
9 d2gfna1 a.4.1.9 (A:4-80) Proba 3.5 2.6E+02 0.019 16.1 2.0 10 72-81 40-49 (77)
10 d2d6ya1 a.4.1.9 (A:7-74) Putat 3.5 2.2E+02 0.016 16.3 1.5 11 72-82 36-46 (68)
No 1
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.64 E-value=1.1e+02 Score=21.33 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHhhhhccchhHHHHHHHhhhhhh---h--hhHHHHH
Q 028928 71 VTSSLYHSSRGKLRKYLRWADYAMI---A--TATVCLS 103 (201)
Q Consensus 71 ~~StlYH~~~~~~k~~~r~lDH~aI---A--YTP~~l~ 103 (201)
.+|++||....+.-.----+|-..| . .+||+.+
T Consensus 58 AAaAl~h~~~~e~~~kvSGl~w~~l~~Cv~WM~PF~~v 95 (130)
T d1w98b1 58 AASALYHFSSSELMQKVSGYQWCDIENCVKWMVPFAMV 95 (130)
T ss_dssp HHHHHHHTSCHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence 6789999886533222233666667 2 7888764
No 2
>d1dcea2 b.7.4.1 (A:242-350) Rab geranylgeranyltransferase alpha-subunit, insert domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.32 E-value=37 Score=23.12 Aligned_cols=11 Identities=45% Similarity=0.902 Sum_probs=7.8
Q ss_pred CcchhhhhHHh
Q 028928 1 MTYCLHVSRRA 11 (201)
Q Consensus 1 ~~~~~~~~~~~ 11 (201)
|.-|+||||..
T Consensus 3 ~I~CvhVsR~e 13 (109)
T d1dcea2 3 VLCCVHVSREE 13 (109)
T ss_dssp CEEEEEEETTT
T ss_pred ceEEEEEeccc
Confidence 44689998853
No 3
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=5.68 E-value=76 Score=20.34 Aligned_cols=9 Identities=56% Similarity=1.236 Sum_probs=7.2
Q ss_pred hhhHHhhhh
Q 028928 6 HVSRRAWQQ 14 (201)
Q Consensus 6 ~~~~~~~~~ 14 (201)
+||+.|||+
T Consensus 35 ~vSk~AW~~ 43 (81)
T d1t07a_ 35 NVSRKAWDE 43 (81)
T ss_dssp HCBHHHHHH
T ss_pred HHHHHHHHH
Confidence 688888875
No 4
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.67 E-value=2.2e+02 Score=14.95 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhccc
Q 028928 58 NMTLYANSLVGVGVTSSLYHSSR 80 (201)
Q Consensus 58 ~~~vy~~sli~l~~~StlYH~~~ 80 (201)
-..+||+.|..+- .+||...
T Consensus 10 ~~i~fgi~mmtli---viyh~~~ 29 (36)
T d1rkla_ 10 LAITFGIVMMTLI---VIYHAVD 29 (36)
T ss_dssp HHHHHHHHHHHHH---HHHHHHT
T ss_pred EEeehhHHHHHHH---HHHhhhc
Confidence 3557887766554 4688654
No 5
>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]}
Probab=4.62 E-value=94 Score=20.30 Aligned_cols=9 Identities=44% Similarity=1.007 Sum_probs=6.9
Q ss_pred hhhHHhhhh
Q 028928 6 HVSRRAWQQ 14 (201)
Q Consensus 6 ~~~~~~~~~ 14 (201)
+||+.|||+
T Consensus 33 ~vSk~AW~~ 41 (91)
T d1xs8a_ 33 EISKDAWAQ 41 (91)
T ss_dssp TCBHHHHHH
T ss_pred HHHHHHHHH
Confidence 678888874
No 6
>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus [TaxId: 32046]}
Probab=3.91 E-value=7e+02 Score=21.61 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=49.1
Q ss_pred HhhhhCCCCCCCcccccCCCCCchhhHHHHHh------------HHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHh
Q 028928 10 RAWQQRPSCLRPIRGCIHGDLHLLERVANVLT------------SLPFIA---LGLQTPRKNLNMTLYANSLVGVGVTSS 74 (201)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~ee~~N~~T------------H~i~li---~~~~~~~~~~~~~vy~~sli~l~~~St 74 (201)
.+|-+||--.||+--.. .|....+|..|+-+ .+++=. .+..+..+.-...+++.-+..+++...
T Consensus 74 e~Wl~dP~~v~P~A~~V-WdP~~GQ~~lna~~~gG~~~~v~It~SG~fq~W~a~Gi~t~~~Ly~~ai~~lila~l~L~aG 152 (739)
T d1jb0b_ 74 EQWVQDPVNTRPIAHAI-WDPQFGKAAVDAFTQAGASNPVDIAYSGVYHWWYTIGMRTNGDLYQGAIFLLILASLALFAG 152 (739)
T ss_dssp HHHHHCTTTCCCEEEEC-CCTTCCHHHHHHHSCTTCSSCEEECCSCHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccCCCcccee-cccccchHhhhcccccCCcCCeeeecchHhHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999987544 33445678888744 222211 222455677778888888888889999
Q ss_pred hhhccc
Q 028928 75 LYHSSR 80 (201)
Q Consensus 75 lYH~~~ 80 (201)
-+|..+
T Consensus 153 w~H~h~ 158 (739)
T d1jb0b_ 153 WLHLQP 158 (739)
T ss_dssp HHTTSG
T ss_pred Hhhccc
Confidence 999874
No 7
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=3.85 E-value=2.3e+02 Score=16.22 Aligned_cols=10 Identities=20% Similarity=0.012 Sum_probs=7.1
Q ss_pred HHhhhhccch
Q 028928 72 TSSLYHSSRG 81 (201)
Q Consensus 72 ~StlYH~~~~ 81 (201)
-+++||-+++
T Consensus 38 ~~t~Y~~F~~ 47 (74)
T d1v7ba1 38 KSGLIYHFPS 47 (74)
T ss_dssp HHHHHHHCSS
T ss_pred cchHhhhCCC
Confidence 4678887775
No 8
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.63 E-value=3e+02 Score=13.38 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=5.8
Q ss_pred HHHHHHHHHH
Q 028928 133 HTGMMEVAFA 142 (201)
Q Consensus 133 ~mGw~~i~~~ 142 (201)
.+||+.++..
T Consensus 3 ~lgwv~llvv 12 (27)
T d2e74h1 3 VLGWVALLVV 12 (27)
T ss_dssp HHHHHHHHHH
T ss_pred chhHhHHHHH
Confidence 4677665543
No 9
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=3.54 E-value=2.6e+02 Score=16.12 Aligned_cols=10 Identities=30% Similarity=0.175 Sum_probs=6.7
Q ss_pred HHhhhhccch
Q 028928 72 TSSLYHSSRG 81 (201)
Q Consensus 72 ~StlYH~~~~ 81 (201)
-+++||-+++
T Consensus 40 ~~~lY~~F~~ 49 (77)
T d2gfna1 40 TGVLNHYFGS 49 (77)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHHCcC
Confidence 4577777765
No 10
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.54 E-value=2.2e+02 Score=16.31 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=7.1
Q ss_pred HHhhhhccchh
Q 028928 72 TSSLYHSSRGK 82 (201)
Q Consensus 72 ~StlYH~~~~~ 82 (201)
-+++||-+.+|
T Consensus 36 ~~~~Y~~F~~K 46 (68)
T d2d6ya1 36 KQLIYAYYGNK 46 (68)
T ss_dssp HHHHHHHHSSH
T ss_pred hhHHHHHCcCH
Confidence 45777777654
Done!