BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028929
         (201 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BGD9|IF4B_MOUSE Eukaryotic translation initiation factor 4B OS=Mus musculus
           GN=Eif4b PE=1 SV=1
          Length = 611

 Score = 33.9 bits (76), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 11/83 (13%)

Query: 6   HSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKPKPTSPGQG 65
           HSP+S   KP  PL+  P P       + +S N P        S S+  ++P PTS    
Sbjct: 458 HSPTSKPPKPDQPLKVMPAPPPKENAWVKRSSNPP------ARSQSSDTEQPSPTS---- 507

Query: 66  FGSSTLSSSSSTSGKPSVADGSK 88
            G   +++       PS  DG+K
Sbjct: 508 -GGGKVAAVQPPEEGPSRKDGNK 529


>sp|B1WAV2|RFX2_XENTR DNA-binding protein RFX2 OS=Xenopus tropicalis GN=rfx2 PE=2 SV=1
          Length = 694

 Score = 32.7 bits (73), Expect = 1.9,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 1   MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKPKPT 60
           M L+     +     YH    + KP S L      +Q   I  +PI +      ++ +P 
Sbjct: 225 MGLRTRRLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAIRQQPIHQK-----QRYRPA 279

Query: 61  SPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQ 92
               G G +T +SS  TS + SVA  S+  +Q
Sbjct: 280 QKMDGMGENTANSSQHTSPEQSVAAQSQHHQQ 311


>sp|Q8TFG6|PPK18_SCHPO Serine/threonine-protein kinase ppk18 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=ppk18 PE=3 SV=2
          Length = 1318

 Score = 31.6 bits (70), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 16/106 (15%)

Query: 43  TEPIEESASAPAKKPKPTSPGQGFGSSTLSSS-SSTSGKPSVADGSKKKKQPKGRRERAS 101
           T P+E ++    + PKP    Q  G STLSS+ SS  G PS+ D    K   KG      
Sbjct: 523 TVPVERNSFRETESPKPFLSRQ-IGISTLSSNISSGKGTPSIQDYEIIKPISKGTFGTVY 581

Query: 102 VVRRNP---------VEKLSVMSKEDEAKAKE-----MMKNESAFL 133
           + R+N          + K+ ++SK   A  K      M + ESAF+
Sbjct: 582 LSRKNTTGEIYAIKVLRKVDMISKNQVANVKAERAVLMAQEESAFV 627


>sp|Q30WJ0|IF2_DESDG Translation initiation factor IF-2 OS=Desulfovibrio desulfuricans
           (strain G20) GN=infB PE=3 SV=1
          Length = 984

 Score = 31.2 bits (69), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 54  AKKPKPTSPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRR 97
           A +P    P  GFG    + +SS       ADG  KKK+ KGRR
Sbjct: 316 APRPGGARPAAGFGQPAQAENSS-----PFADGQSKKKRQKGRR 354


>sp|A1CIL1|CREB_ASPCL Probable ubiquitin carboxyl-terminal hydrolase creB OS=Aspergillus
           clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
           3887 / NRRL 1) GN=creB PE=3 SV=2
          Length = 760

 Score = 30.8 bits (68), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 75  SSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVMSKEDEAKAKEMMKNESAFLL 134
           S   GK   A   K++K  +  RE+A  +RR          KE EA+AKE  + E A L 
Sbjct: 576 SDVQGKKERAREEKERKAAEKEREKAEKLRR----------KEQEARAKENQRREEAELK 625

Query: 135 AWL 137
           A L
Sbjct: 626 AAL 628


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.127    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,239,050
Number of Sequences: 539616
Number of extensions: 3223008
Number of successful extensions: 16796
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 318
Number of HSP's that attempted gapping in prelim test: 15873
Number of HSP's gapped (non-prelim): 1070
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)