BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028930
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 55 FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAI 114
F QL E+ FA+YDGH G + H+ I+ + + ++ A+ + D+A
Sbjct: 28 FAQLTD-EVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAF 86
Query: 115 LSHS-----SDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--N 167
SH+ + L G+TA A+L +G L VA+VGDSRA+L G +++T DH P
Sbjct: 87 SSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERK 146
Query: 168 TERGSIEDKGGFVS 181
E+ I+ GGFV+
Sbjct: 147 DEKERIKKCGGFVA 160
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 21/168 (12%)
Query: 32 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHE-LGLFAIYDGHLGETVPAYLQKHLFSNIL 90
+++G S ++G MED H A G E FA+YDGH G V Y HL +I
Sbjct: 24 LRYGLSSMQG-WRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHIT 82
Query: 91 KEEEFWV-------------DPQRSISKAYEKTDQAILSHS---SDLGRGGSTAVTAILI 134
E+F + + I + K D+ + + S + + R GSTAV ++I
Sbjct: 83 TNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAV-GVMI 141
Query: 135 NGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNT--ERGSIEDKGGFV 180
+ + ++ N GDSRAVL G T DH+P E+ I++ GG V
Sbjct: 142 SPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSV 189
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 55 FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAI 114
F QL E+ FA+YDGH G + H+ I+ + + ++ A+ + D+A
Sbjct: 142 FAQLTD-EVLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAF 200
Query: 115 LSHS-----SDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--N 167
SH+ + L G+TA A+L +G L VA+VGDSRA+L G +++T DH P
Sbjct: 201 SSHARLSADATLLTSGTTATVALLRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERK 260
Query: 168 TERGSIEDKGGFVS 181
E+ I+ GGFV+
Sbjct: 261 DEKERIKKCGGFVA 274
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 21/140 (15%)
Query: 62 ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFW--VDPQRSISKAYEKTDQAIL---- 115
+ FA+YDGH G V Y HL LK E + + ++++ +A+ D +L
Sbjct: 50 QCSFFAVYDGHGGAEVAQYCSLHL-PTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKV 108
Query: 116 ----------SHSSDLGRGGSTAVTAI--LINGQRLWVANVGDSRAVLSTAGVAVQMTTD 163
S SD G + TA+ L++G+ L+VAN GDSR V+ G A++M+ D
Sbjct: 109 IEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGKALEMSFD 168
Query: 164 HEP--NTERGSIEDKGGFVS 181
H+P E IE GG V+
Sbjct: 169 HKPEDTVEYQRIEKAGGRVT 188
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 20/165 (12%)
Query: 32 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHE-LGLFAIYDGHLGETVPAYLQKHLFSNIL 90
+++G S ++G MED H A G E FA+YDGH G V Y +HL +I
Sbjct: 22 LRYGLSSMQG-WRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHIT 80
Query: 91 KEEEFW--------VDPQRSISKAYEKTDQAIL-----SHSSDLGRGGSTAVTAILINGQ 137
++F + + I + + D+ + H +D R GSTAV +LI+ Q
Sbjct: 81 NNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGAD--RSGSTAV-GVLISPQ 137
Query: 138 RLWVANVGDSRAVLSTAGVAVQMTTDHEPNT--ERGSIEDKGGFV 180
+ N GDSR +L T DH+P+ E+ I++ GG V
Sbjct: 138 HTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSV 182
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 20/165 (12%)
Query: 32 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHE-LGLFAIYDGHLGETVPAYLQKHLFSNIL 90
+++G S ++G MED H A G E FA+YDGH G V Y +HL +I
Sbjct: 22 LRYGLSSMQG-WRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHIT 80
Query: 91 KEEEFW--------VDPQRSISKAYEKTDQAIL-----SHSSDLGRGGSTAVTAILINGQ 137
++F + + I + + D+ + H +D R GSTAV +LI+ Q
Sbjct: 81 NNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGAD--RSGSTAV-GVLISPQ 137
Query: 138 RLWVANVGDSRAVLSTAGVAVQMTTDHEPNT--ERGSIEDKGGFV 180
+ N GDSR +L T DH+P+ E+ I++ GG V
Sbjct: 138 HTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSV 182
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 30/173 (17%)
Query: 34 FGFSLVKGKANHPMEDY--HVAKFVQ------LQGH-----ELGLFAIYDGHLGETVPAY 80
+GF+ + G+ MED + +F+Q L G F +YDGH G V Y
Sbjct: 26 YGFTSICGRRPE-MEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANY 84
Query: 81 LQKH----LFSNILKEE------EFWVDP-QRSISKAYEKTDQAILSHSSDLGRGGSTAV 129
++ L I KE+ + W++ ++++ ++ + D I S + + GST+V
Sbjct: 85 CRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEIESVAPETV--GSTSV 142
Query: 130 TAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNT--ERGSIEDKGGFV 180
A++ ++VAN GDSRAVL A+ ++ DH+P+ E IE GG V
Sbjct: 143 VAVVFPSH-IFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKV 194
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 30/173 (17%)
Query: 34 FGFSLVKGKANHPMEDY--HVAKFVQ------LQGH-----ELGLFAIYDGHLGETVPAY 80
+GF+ + G+ MED + +F+Q L G F +YDGH G V Y
Sbjct: 14 YGFTSICGRRPE-MEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANY 72
Query: 81 LQKH----LFSNILKEE------EFWVDP-QRSISKAYEKTDQAILSHSSDLGRGGSTAV 129
++ L I KE+ + W++ ++++ ++ + D I S + + GST+V
Sbjct: 73 CRERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEIESVAPETV--GSTSV 130
Query: 130 TAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNT--ERGSIEDKGGFV 180
A++ ++VAN GDSRAVL A+ ++ DH+P+ E IE GG V
Sbjct: 131 VAVVFPSH-IFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKV 182
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 30/173 (17%)
Query: 34 FGFSLVKGKANHPMEDY--HVAKFVQ------LQGH-----ELGLFAIYDGHLGETVPAY 80
+GF+ + G+ MED + +F+Q L G F +YDGH G V Y
Sbjct: 11 YGFTSICGRRPE-MEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANY 69
Query: 81 LQKH----LFSNILKEE------EFWVDP-QRSISKAYEKTDQAILSHSSDLGRGGSTAV 129
++ L I KE+ + W++ ++++ ++ + D I S + + GST+V
Sbjct: 70 CRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIESVAPETV--GSTSV 127
Query: 130 TAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNT--ERGSIEDKGGFV 180
A++ ++VAN GDSRAVL A+ ++ DH+P+ E IE GG V
Sbjct: 128 VAVVFPSH-IFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKV 179
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 65 LFAIYDGHLGETVPAYLQKH----LFSNILKEEEFWVDP-------QRSISKAYEKTDQA 113
F +YDGH G V Y ++ L I+KE+ + D ++++ ++ + D
Sbjct: 61 FFGVYDGHGGSQVANYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSE 120
Query: 114 ILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNT--ERG 171
I + + GST+V A++ ++VAN GDSRAVL + ++ DH+P+ E
Sbjct: 121 IETVAHAPETVGSTSVVAVVFPTH-IFVANCGDSRAVLCRGKTPLALSVDHKPDRDDEAA 179
Query: 172 SIEDKGGFV 180
IE GG V
Sbjct: 180 RIEAAGGKV 188
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 55 FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----------------W- 96
L GH F +YDGH G V Y + L + +E E W
Sbjct: 46 LTHLTGH---FFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWD 102
Query: 97 ---------VDPQ------RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWV 141
VD + R++ + +K +A+ S + GSTAV A L+ + V
Sbjct: 103 KVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETV-----GSTAVVA-LVCSSHIVV 156
Query: 142 ANVGDSRAVLSTAGVAVQMTTDHEPNTER--GSIEDKGGFV 180
+N GDSRAVL A+ ++ DH+P+ E IE+ GG V
Sbjct: 157 SNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKV 197
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With The
Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 55 FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----------------W- 96
L GH F +YDGH G V Y + L + +E E W
Sbjct: 57 LTHLTGH---FFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWD 113
Query: 97 ---------VDPQ------RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWV 141
VD + R++ + +K +A+ S + GSTAV A L+ + V
Sbjct: 114 KVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETV-----GSTAVVA-LVCSSHIVV 167
Query: 142 ANVGDSRAVLSTAGVAVQMTTDHEPNTER--GSIEDKGGFV 180
+N GDSRAVL A+ ++ DH+P+ E IE+ GG V
Sbjct: 168 SNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKV 208
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 55 FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----------------W- 96
L GH F +YDGH G V Y + L + +E E W
Sbjct: 63 LTHLTGH---FFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWD 119
Query: 97 ---------VDPQ------RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWV 141
VD + R++ + +K +A+ S + GSTAV A L+ + V
Sbjct: 120 KVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETV-----GSTAVVA-LVCSSHIVV 173
Query: 142 ANVGDSRAVLSTAGVAVQMTTDHEPNTER--GSIEDKGGFV 180
+N GDSRAVL A+ ++ DH+P+ E IE+ GG V
Sbjct: 174 SNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKV 214
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 55 FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----------------W- 96
L GH F +YDGH G V Y + L + +E E W
Sbjct: 61 LTHLTGH---FFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWD 117
Query: 97 ---------VDPQ------RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWV 141
VD + R++ + +K +A+ S + GSTAV A L+ + V
Sbjct: 118 KVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETV-----GSTAVVA-LVCSSHIVV 171
Query: 142 ANVGDSRAVLSTAGVAVQMTTDHEPNTER--GSIEDKGGFV 180
+N GDSRAVL A+ ++ DH+P+ E IE+ GG V
Sbjct: 172 SNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKV 212
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 340
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 55 FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----------------W- 96
L GH F +YDGH G V Y + L + +E E W
Sbjct: 60 LTHLTGH---FFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELSKRNTGEGRQVQWD 116
Query: 97 ---------VDPQ------RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWV 141
VD + R++ + +K +A+ S + GSTAV A L+ + V
Sbjct: 117 KVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETV-----GSTAVVA-LVCSSHIVV 170
Query: 142 ANVGDSRAVLSTAGVAVQMTTDHEPNTER--GSIEDKGGFV 180
+N GDSRAVL A+ ++ DH+P+ E IE+ GG V
Sbjct: 171 SNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKV 211
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 44/161 (27%)
Query: 55 FVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----------------W- 96
L GH F +YDGH G V Y + L + +E E W
Sbjct: 70 LTHLTGH---FFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWD 126
Query: 97 ---------VDPQ------RSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWV 141
VD + R++ + +K +A+ S + GSTAV A L+ + V
Sbjct: 127 KVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETV-----GSTAVVA-LVCSSHIVV 180
Query: 142 ANVGDSRAVLSTAGVAVQMTTDHEPNTER--GSIEDKGGFV 180
+N GDSRAVL A+ ++ DH+P+ E IE+ GG V
Sbjct: 181 SNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKV 221
>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
From Thermosynechococcus Elongatus
pdb|2J86|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha
Of Thermosynechococcus Elongatus
pdb|2J86|B Chain B, Structural Analysis Of The Pp2c Family Phosphatase Tppha
Of Thermosynechococcus Elongatus
Length = 240
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 77 VPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILI-- 134
+ YL+ HL E+ DP + +A+ + AI+ TA++I
Sbjct: 53 IRQYLETHL-------EDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILL 105
Query: 135 --NGQRLWVANVGDSRAVLSTAGVAVQMTTDH 164
G R W A+VGDSR Q+T+DH
Sbjct: 106 DEKGDRAWCAHVGDSRIYRWRKDQLQQITSDH 137
>pdb|2XZV|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
Three Metals In The Catalytic Center For Efficient
Catalysis
Length = 240
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 77 VPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILI-- 134
+ YL+ HL E+ DP + +A+ + AI+ TA++I
Sbjct: 53 IRQYLETHL-------EDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILL 105
Query: 135 --NGQRLWVANVGDSRAVLSTAGVAVQMTTDH 164
G R W A+VGDSR Q+T+DH
Sbjct: 106 DEKGDRAWCAHVGDSRIYRWRKDQLQQITSDH 137
>pdb|1TXO|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A.
pdb|1TXO|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
SerineTHREONINE PHOSPHATASE PSTPPPP AT 1.95 A
Length = 237
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 124 GGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTD 163
G T +TAIL G RL + ++GDSR L G Q+T D
Sbjct: 93 GXGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKD 132
>pdb|2CM1|A Chain A, Crystal Structure Of The Catalytic Domain Of Serine
Threonine Protein Phosphatase Pstp In Complex With 2
Manganese Ions
Length = 260
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 65 LFAIYDGHLGETVPAYLQKHLFSNI--LKEEEFWVDPQRSISKAYEKTDQAILSH---SS 119
L A+ DG G + + + + L ++E D + A + AI +
Sbjct: 53 LLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEP 112
Query: 120 DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTD 163
DL G T +TAIL G RL + ++GDSR L G Q+T D
Sbjct: 113 DL-EGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKD 155
>pdb|2Y09|A Chain A, The Cyanobacterial Pp2c-Like Phosphatase Tppha Requires
Three Metals In The Catalytic Center For Efficient
Catalysis
Length = 240
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 77 VPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILI-- 134
+ YL+ HL E+ DP + +A+ + AI+ TA++I
Sbjct: 53 IRQYLETHL-------EDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILL 105
Query: 135 --NGQRLWVANVGDSRAVLSTAGVAVQMTTDH 164
G R W A+VG SR Q+T+DH
Sbjct: 106 DEKGDRAWCAHVGASRIYRWRKDQLQQITSDH 137
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c
pdb|3N3C|A Chain A, Crystal Structure Of Native Bovine Pdp1c
Length = 467
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 124 GGSTAVTAILINGQRLWVANVGDSRAVLST-----AGVAVQMTTDHEPNTERGSIEDKGG 178
G+TA A ++G L VAN GDSRA+L + AV ++ DH ER K
Sbjct: 199 SGATACVA-HVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNEREVERLKLE 257
Query: 179 FVSNMPEYQVILVGIINLICPF 200
N + V ++ L+ PF
Sbjct: 258 HPKNEAKSVVKQDRLLGLLMPF 279
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
pdb|2PNQ|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1
(Pdp1)
Length = 467
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 125 GSTAVTAILINGQRLWVANVGDSRAVLST-----AGVAVQMTTDHEPNTERGSIEDKGGF 179
G+TA A ++G L VAN GDSRA+L + AV ++ DH ER K
Sbjct: 200 GATACVA-HVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEH 258
Query: 180 VSNMPEYQVILVGIINLICPF 200
N + V ++ L+ PF
Sbjct: 259 PKNEAKSVVKQDRLLGLLMPF 279
>pdb|3D8K|A Chain A, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|B Chain B, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|C Chain C, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
pdb|3D8K|D Chain D, Crsytal Structure Of A Phosphatase From A Toxoplasma
Gondii
Length = 377
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 139 LWVANVGDSRAVLSTAGVAVQMTTDHEPNT--ERGSIEDKGGFVSNMPEYQVILVGIINL 196
+ VA++G+SR VL + A+ ++T H ++ ER ++ GG + + +++L G++
Sbjct: 168 IHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTV-NGELLLGGVVPX 226
Query: 197 ICPF 200
F
Sbjct: 227 TRAF 230
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 67 AIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGS 126
A++DGH GE Y KH ++ K EF + KA D I+ LG
Sbjct: 47 AVFDGHAGEATSQYCAKHAAKHLGKLSEFTF---AEVKKACLSLDAEIIRK---LGPKHV 100
Query: 127 TAVTAILINGQRL 139
T I++ +RL
Sbjct: 101 AGSTGIIVAIERL 113
>pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3
Length = 152
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T+ G RL +G
Sbjct: 99 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTSTGNAGSRLACGVIG 149
>pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3)
Length = 151
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T+ G RL +G
Sbjct: 98 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTSTGNAGSRLACGVIG 148
>pdb|2PK0|A Chain A, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|B Chain B, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|C Chain C, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|D Chain D, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
Length = 250
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 119 SDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDH 164
SD +G T + A+ I G + A+VGDSR + G +T+DH
Sbjct: 96 SDDYKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVRQGEYHLLTSDH 141
>pdb|1E9P|B Chain B, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3
Of 3)
Length = 151
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T+ G RL +G
Sbjct: 98 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTSTGNAGSRLACGVIG 148
>pdb|3RNR|A Chain A, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
pdb|3RNR|B Chain B, Crystal Structure Of Stage Ii Sporulation E Family Protein
From Thermanaerovibrio Acidaminovorans
Length = 211
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 116 SHSSDLGRGGST-AVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTE----- 169
S LGR G+T AV A+ + L A+VGD R L G +++ DH ++E
Sbjct: 62 SQGGILGRTGATXAVAAVNLRDGTLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEXVLLG 121
Query: 170 RGSIEDKGGFVSNMPEYQVILVGIINLI------CPFP 201
RG + G E +GI NL P P
Sbjct: 122 RGPVPGPAG------EXITSFIGIENLTEISTSEAPLP 153
>pdb|1Q0E|A Chain A, Atomic Resolution (1.15 ) Crystal Structure Of Bovine
Copper, Zinc Superoxide Dismutase
pdb|1Q0E|B Chain B, Atomic Resolution (1.15 ) Crystal Structure Of Bovine
Copper, Zinc Superoxide Dismutase
pdb|2SOD|O Chain O, Determination And Analysis Of The 2 Angstrom Structure Of
Copper, Zinc Superoxide Dismutase
pdb|2SOD|Y Chain Y, Determination And Analysis Of The 2 Angstrom Structure Of
Copper, Zinc Superoxide Dismutase
pdb|2SOD|B Chain B, Determination And Analysis Of The 2 Angstrom Structure Of
Copper, Zinc Superoxide Dismutase
pdb|2SOD|G Chain G, Determination And Analysis Of The 2 Angstrom Structure Of
Copper, Zinc Superoxide Dismutase
Length = 152
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T G RL +G
Sbjct: 99 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 149
>pdb|1COB|A Chain A, Crystal Structure Solution And Refinement Of The
Semisynthetic Cobalt Substituted Bovine Erythrocyte
Enzyme Superoxide Dismutase At 2.0 Angstroms Resolution
pdb|1COB|B Chain B, Crystal Structure Solution And Refinement Of The
Semisynthetic Cobalt Substituted Bovine Erythrocyte
Enzyme Superoxide Dismutase At 2.0 Angstroms Resolution
pdb|1SXA|A Chain A, Crystal Structure Of Reduced Bovine Erythrocyte Superoxide
Dismutase At 1.9 Angstroms Resolution
pdb|1SXA|B Chain B, Crystal Structure Of Reduced Bovine Erythrocyte Superoxide
Dismutase At 1.9 Angstroms Resolution
pdb|1SXB|A Chain A, Crystal Structure Of Reduced Bovine Erythrocyte Superoxide
Dismutase At 1.9 Angstroms Resolution
pdb|1SXB|B Chain B, Crystal Structure Of Reduced Bovine Erythrocyte Superoxide
Dismutase At 1.9 Angstroms Resolution
pdb|1SXC|A Chain A, Crystal Structure Of Reduced Bovine Erythrocyte Superoxide
Dismutase At 1.9 Angstroms Resolution
pdb|1SXC|B Chain B, Crystal Structure Of Reduced Bovine Erythrocyte Superoxide
Dismutase At 1.9 Angstroms Resolution
pdb|1SXN|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0
pdb|1SXN|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0
pdb|1SXS|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Thiocyanate
pdb|1SXS|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Thiocyanate
pdb|1SXZ|A Chain A, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Azide
pdb|1SXZ|B Chain B, Reduced Bovine Superoxide Dismutase At Ph 5.0 Complexed
With Azide
pdb|1CBJ|A Chain A, Crystal Structure Of Bovine Superoxide Dismutase Crystal.
pdb|1CBJ|B Chain B, Crystal Structure Of Bovine Superoxide Dismutase Crystal.
pdb|2AEO|A Chain A, Crystal Structure Of Cisplatinated Bovine Cu,Zn Superoxide
Dismutase
pdb|2AEO|B Chain B, Crystal Structure Of Cisplatinated Bovine Cu,Zn Superoxide
Dismutase
pdb|2Z7U|A Chain A, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2Z7U|B Chain B, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2Z7W|A Chain A, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2Z7W|B Chain B, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2Z7Y|A Chain A, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2Z7Y|B Chain B, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2Z7Z|A Chain A, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2Z7Z|B Chain B, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2ZOW|A Chain A, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|2ZOW|B Chain B, Crystal Structure Of H2o2 Treated Cu,Zn-Sod
pdb|3HW7|A Chain A, High Pressure (0.57 Gpa) Crystal Structure Of Bovine
Copper, Zinc Superoxide Dismutase At 2.0 Angstroms
pdb|3HW7|B Chain B, High Pressure (0.57 Gpa) Crystal Structure Of Bovine
Copper, Zinc Superoxide Dismutase At 2.0 Angstroms
Length = 151
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T G RL +G
Sbjct: 98 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 148
>pdb|1CB4|A Chain A, Crystal Structure Of Copper, Zinc Superoxide Dismutase
pdb|1CB4|B Chain B, Crystal Structure Of Copper, Zinc Superoxide Dismutase
Length = 151
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T G RL +G
Sbjct: 98 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 148
>pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3
Length = 152
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T G RL +G
Sbjct: 99 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 149
>pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3)
Length = 151
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T G RL +G
Sbjct: 98 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 148
>pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3
Of 3)
Length = 151
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T G RL +G
Sbjct: 98 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 148
>pdb|3SOD|O Chain O, Changes In Crystallographic Structure And Thermostability
Of A Cu,Zn Superoxide Dismutase Mutant Resulting From
The Removal Of Buried Cysteine
pdb|3SOD|Y Chain Y, Changes In Crystallographic Structure And Thermostability
Of A Cu,Zn Superoxide Dismutase Mutant Resulting From
The Removal Of Buried Cysteine
pdb|3SOD|G Chain G, Changes In Crystallographic Structure And Thermostability
Of A Cu,Zn Superoxide Dismutase Mutant Resulting From
The Removal Of Buried Cysteine
pdb|3SOD|B Chain B, Changes In Crystallographic Structure And Thermostability
Of A Cu,Zn Superoxide Dismutase Mutant Resulting From
The Removal Of Buried Cysteine
Length = 152
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 97 VDPQRSISKAYEKTDQAILSHS--SDLGRGGSTAVTAILINGQRLWVANVG 145
VDP S+S Y + ++ H DLGRGG+ T G RL +G
Sbjct: 99 VDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIG 149
>pdb|2QW5|A Chain A, Crystal Structure Of A Putative Sugar Phosphate
IsomeraseEPIMERASE (Ava4194) From Anabaena Variabilis
Atcc 29413 At 1.78 A Resolution
pdb|2QW5|B Chain B, Crystal Structure Of A Putative Sugar Phosphate
IsomeraseEPIMERASE (Ava4194) From Anabaena Variabilis
Atcc 29413 At 1.78 A Resolution
Length = 335
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 65 LFAIYDGHLG----ETVPAYLQKHLFSNILK--EEEFWV---DPQRSISKAYEKTDQAIL 115
+ +YDG + +PA F+N L+ +FW+ DP AY+ D+AI
Sbjct: 270 IVKVYDGPIAVEIFNAIPA------FTNSLRLTRRKFWIPDEDPPNQYPNAYDIADEAIK 323
Query: 116 SHSSDLGRGGS 126
+L + GS
Sbjct: 324 VTRKELKKIGS 334
>pdb|1Q33|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt9
pdb|1QVJ|A Chain A, Structure Of Nudt9 Complexed With Ribose-5-Phosphate
Length = 292
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 42 KANHPMEDYHVAKFVQLQGHELGLFAIYDGHL--GETVPAYLQKHLFSNIL 90
K HP+ H+ +FV ++ + G +AI G + GE + A L++ L
Sbjct: 128 KIXHPVSGKHILQFVAIKRKDCGEWAIPGGXVDPGEKISATLKREFGEEAL 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,576,083
Number of Sequences: 62578
Number of extensions: 212018
Number of successful extensions: 475
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 41
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)