Query 028930
Match_columns 201
No_of_seqs 126 out of 1269
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697 Protein phosphatase 1B 100.0 7.5E-37 1.6E-41 246.3 13.4 169 27-201 17-198 (379)
2 PLN03145 Protein phosphatase 2 100.0 2.3E-35 4.9E-40 253.0 19.1 166 30-201 63-239 (365)
3 KOG0698 Serine/threonine prote 100.0 1.6E-34 3.4E-39 245.8 20.8 170 30-201 37-219 (330)
4 PF00481 PP2C: Protein phospha 100.0 4.3E-34 9.3E-39 234.9 12.6 164 33-201 1-174 (254)
5 PTZ00224 protein phosphatase 2 100.0 6.6E-33 1.4E-37 238.7 20.4 164 23-201 13-178 (381)
6 COG0631 PTC1 Serine/threonine 100.0 1.7E-29 3.6E-34 208.7 13.3 164 29-201 5-178 (262)
7 KOG0699 Serine/threonine prote 100.0 5.7E-29 1.2E-33 207.1 13.2 75 123-201 328-404 (542)
8 smart00332 PP2Cc Serine/threon 99.9 5.4E-25 1.2E-29 179.6 19.7 163 31-201 5-175 (255)
9 cd00143 PP2Cc Serine/threonine 99.9 4.3E-25 9.4E-30 179.5 17.9 162 33-201 2-172 (254)
10 KOG0700 Protein phosphatase 2C 99.9 1.9E-25 4.2E-30 188.8 15.0 151 46-201 84-286 (390)
11 PRK14559 putative protein seri 99.9 6.1E-25 1.3E-29 199.3 15.8 163 31-201 374-554 (645)
12 KOG1323 Serine/threonine phosp 99.8 2.2E-18 4.9E-23 142.8 11.1 118 59-176 140-297 (493)
13 PF13672 PP2C_2: Protein phosp 99.6 2.5E-14 5.4E-19 114.1 11.5 125 37-166 3-139 (212)
14 KOG0618 Serine/threonine phosp 99.4 6.4E-13 1.4E-17 122.7 8.3 165 28-201 518-692 (1081)
15 KOG1379 Serine/threonine prote 99.2 3.1E-10 6.7E-15 94.1 11.7 109 46-164 90-208 (330)
16 smart00331 PP2C_SIG Sigma fact 99.2 2.4E-09 5.2E-14 84.0 15.8 112 45-166 15-129 (193)
17 TIGR02865 spore_II_E stage II 98.2 3.4E-05 7.3E-10 72.8 13.1 113 44-166 564-678 (764)
18 PF07228 SpoIIE: Stage II spor 97.8 0.00054 1.2E-08 53.3 11.8 99 62-166 3-105 (193)
19 PRK10693 response regulator of 37.7 2.4E+02 0.0052 23.5 11.7 94 67-166 169-266 (303)
20 PF01383 CpcD: CpcD/allophycoc 27.3 53 0.0012 20.4 1.9 16 167-182 37-52 (56)
21 TIGR02276 beta_rpt_yvtn 40-res 26.1 1.2E+02 0.0026 16.5 3.2 18 136-153 3-20 (42)
22 PF12953 DUF3842: Domain of un 20.4 1.4E+02 0.003 22.1 3.2 11 66-76 2-12 (131)
No 1
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-37 Score=246.32 Aligned_cols=169 Identities=26% Similarity=0.411 Sum_probs=144.8
Q ss_pred CCCCceEEEEEeecCCCCCCCCccEEEEeee-cCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCC--------
Q 028930 27 SNVGLVKFGFSLVKGKANHPMEDYHVAKFVQ-LQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV-------- 97 (201)
Q Consensus 27 ~~~~~~~~~~~s~~G~~r~~nED~~~~~~~~-~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~-------- 97 (201)
..-..++||..|++|+ |-+|||++.+.... ..-.+|.||||||||.|..+|.+++.+|+..+.....+..
T Consensus 17 G~GNglryg~SSMQGW-R~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~ 95 (379)
T KOG0697|consen 17 GEGNGLRYGVSSMQGW-RVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVE 95 (379)
T ss_pred CcCCceeeeeccccch-hhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHH
Confidence 4456799999999999 79999999765433 3347899999999999999999999999999987655433
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCC--CCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHH
Q 028930 98 DPQRSISKAYEKTDQAILSHSSDL--GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSI 173 (201)
Q Consensus 98 ~~~~~l~~~f~~~~~~l~~~~~~~--~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri 173 (201)
+.+.-|+..|.++|+.+....... ...+|||.+++++.+.++|++|+||||++++|+|.+..-|.||+| +.|++||
T Consensus 96 ~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRI 175 (379)
T KOG0697|consen 96 NVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERI 175 (379)
T ss_pred HHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHH
Confidence 567889999999999887633211 122666666779999999999999999999999999999999999 9999999
Q ss_pred HhCCCeEEeCCCCcceeeceeeecccCC
Q 028930 174 EDKGGFVSNMPEYQVILVGIINLICPFP 201 (201)
Q Consensus 174 ~~agg~i~~~~~~~~rv~G~l~~sR~~G 201 (201)
+.|||.|.- .||||.|+|||+||
T Consensus 176 qnAGGSVMI-----qRvNGsLAVSRAlG 198 (379)
T KOG0697|consen 176 QNAGGSVMI-----QRVNGSLAVSRALG 198 (379)
T ss_pred hcCCCeEEE-----EEecceeeeehhcc
Confidence 999999996 79999999999998
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=2.3e-35 Score=253.03 Aligned_cols=166 Identities=31% Similarity=0.459 Sum_probs=142.2
Q ss_pred CceEEEEEeecCCCCCCCCccEEEEeeec--------CCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCCHHH
Q 028930 30 GLVKFGFSLVKGKANHPMEDYHVAKFVQL--------QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQR 101 (201)
Q Consensus 30 ~~~~~~~~s~~G~~r~~nED~~~~~~~~~--------~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~~~~~ 101 (201)
+.++++..|++|. |++|||++++..... ...+..+|+|||||||..++++++..+++.+.+.......+.+
T Consensus 63 ~~~~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGS-RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccC-CCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 5568999999997 899999987543221 1234689999999999999999999999998876555556788
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHHHhCCC
Q 028930 102 SISKAYEKTDQAILSHSS-DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGG 178 (201)
Q Consensus 102 ~l~~~f~~~~~~l~~~~~-~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri~~agg 178 (201)
+|+++|.++|+.|.+... .....+|||++++++.++++|||||||||+|+++++++++||+||+| +.|++||+++||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 999999999999876432 22345788888889999999999999999999999999999999999 789999999999
Q ss_pred eEEeCCCCcceeeceeeecccCC
Q 028930 179 FVSNMPEYQVILVGIINLICPFP 201 (201)
Q Consensus 179 ~i~~~~~~~~rv~G~l~~sR~~G 201 (201)
+|.+ +|++|.+++||+||
T Consensus 222 ~v~~-----g~v~g~l~vTRalG 239 (365)
T PLN03145 222 YVYD-----GYLNGQLNVARALG 239 (365)
T ss_pred ceec-----ceECCccccccccc
Confidence 9986 69999999999998
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-34 Score=245.77 Aligned_cols=170 Identities=39% Similarity=0.589 Sum_probs=141.3
Q ss_pred CceE-EEEEeecCCCCCCCCccEEEEeeec----CCC-ceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCC---HH
Q 028930 30 GLVK-FGFSLVKGKANHPMEDYHVAKFVQL----QGH-ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVD---PQ 100 (201)
Q Consensus 30 ~~~~-~~~~s~~G~~r~~nED~~~~~~~~~----~~~-~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~~---~~ 100 (201)
.... .+..+.+|+ |..|||.+....... ... +..+|||||||||..+|+|+..+|+..+.++...... ..
T Consensus 37 ~~~~~~~~~~~~~~-r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~ 115 (330)
T KOG0698|consen 37 ESYRLGSLLSIRGR-RRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVK 115 (330)
T ss_pred ccccceEEEecCCC-CCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHH
Confidence 3344 444577777 678999987654432 223 5899999999999999999999999999998777664 78
Q ss_pred HHHHHHHH-HHHHHHHhcCCCCCCCccceEEEEEEeCCEEEEEEcccccEEEEeCC-eeEeCCCCCCC--hhHHHHHHhC
Q 028930 101 RSISKAYE-KTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAG-VAVQMTTDHEP--NTERGSIEDK 176 (201)
Q Consensus 101 ~~l~~~f~-~~~~~l~~~~~~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g-~~~~Lt~dH~~--~~E~~Ri~~a 176 (201)
++++++|. ++|..+..+.......|+||+++++..++++||||+|||||+|++++ .+++||.||+| ++|+.||+++
T Consensus 116 ~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~ 195 (330)
T KOG0698|consen 116 DALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAA 195 (330)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHc
Confidence 99999999 69999987633334567777776556566999999999999999866 89999999999 9999999999
Q ss_pred CCeEEeCCCCcceeeceeeecccCC
Q 028930 177 GGFVSNMPEYQVILVGIINLICPFP 201 (201)
Q Consensus 177 gg~i~~~~~~~~rv~G~l~~sR~~G 201 (201)
||+|..+.+ .+||+|.|+|||+||
T Consensus 196 GG~v~~~~~-~~Rv~G~LavsRa~G 219 (330)
T KOG0698|consen 196 GGRVSNWGG-VWRVNGVLAVSRAFG 219 (330)
T ss_pred CCEEEEcCC-cceEeceEEEeeecC
Confidence 999998776 579999999999998
No 4
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=4.3e-34 Score=234.89 Aligned_cols=164 Identities=32% Similarity=0.500 Sum_probs=132.8
Q ss_pred EEEEEeecCCCCCCCCccEEEEeeec---CCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCC--CHHHHHHHHH
Q 028930 33 KFGFSLVKGKANHPMEDYHVAKFVQL---QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV--DPQRSISKAY 107 (201)
Q Consensus 33 ~~~~~s~~G~~r~~nED~~~~~~~~~---~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~--~~~~~l~~~f 107 (201)
.+++.+.+|. |++|||.+++..... ...+..+|+|||||||.++|++++..++..+.+...... ++.++|+.+|
T Consensus 1 ~~~~~~~~g~-r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGV-RKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECT-SSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCC-CCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 4788999999 789999998776553 446789999999999999999999999977766544333 4889999999
Q ss_pred HH-HHHHHHhcCCC-CCCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeE-eCCCCCCC--hhHHHHHHhCCCeEEe
Q 028930 108 EK-TDQAILSHSSD-LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAV-QMTTDHEP--NTERGSIEDKGGFVSN 182 (201)
Q Consensus 108 ~~-~~~~l~~~~~~-~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~-~Lt~dH~~--~~E~~Ri~~agg~i~~ 182 (201)
.+ +++.+...... ....+|||++++++.++++|+|||||||+|+++++... +||+||+| +.|++||+++||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 99888763211 23456667777799999999999999999999999888 99999999 8999999999999995
Q ss_pred CCCCcceeeceeeecccCC
Q 028930 183 MPEYQVILVGIINLICPFP 201 (201)
Q Consensus 183 ~~~~~~rv~G~l~~sR~~G 201 (201)
.+|++|.|++||+||
T Consensus 160 ----~~rv~g~l~~sRalG 174 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALG 174 (254)
T ss_dssp ----TEEETTTBSSSB-EE
T ss_pred ----chhhhhccccccccc
Confidence 379999999999998
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=6.6e-33 Score=238.70 Aligned_cols=164 Identities=27% Similarity=0.425 Sum_probs=134.0
Q ss_pred CCCCCCCCceEEEEEeecCCCCCCCCccEEEEeeecCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCCHHHH
Q 028930 23 GKGRSNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRS 102 (201)
Q Consensus 23 ~~~~~~~~~~~~~~~s~~G~~r~~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~~~~~~ 102 (201)
...+.....+.++..+++|+ |++|||++++... .+..+|+|||||+|+++|++++..|...+...... ...+.
T Consensus 13 ~~~~~~~~~~~~g~~s~~G~-R~~nED~~~v~~~----~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~ 85 (381)
T PTZ00224 13 LVDRAGNSIFRCASACVNGY-RESMEDAHLLYLT----DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP--MTDER 85 (381)
T ss_pred ccccCCCccEEEEEEeCCCC-CCCCCCeeEeccC----CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHH
Confidence 33344677899999999999 7899999764322 34579999999999999999999998766543221 13466
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHHHhCCCeE
Q 028930 103 ISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGGFV 180 (201)
Q Consensus 103 l~~~f~~~~~~l~~~~~~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri~~agg~i 180 (201)
|+++|..+|+.+.+... .+|+|+++++++.+.++|||||||||+|++++|++++||+||+| +.|+.||+++||.+
T Consensus 86 l~~a~~~~d~~i~~~~~---~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v 162 (381)
T PTZ00224 86 MEELCLEIDEEWMDSGR---EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRV 162 (381)
T ss_pred HHHHHHHHHHHHHhccc---CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEe
Confidence 99999999999986543 23555555555557899999999999999999999999999999 77999999999999
Q ss_pred EeCCCCcceeeceeeecccCC
Q 028930 181 SNMPEYQVILVGIINLICPFP 201 (201)
Q Consensus 181 ~~~~~~~~rv~G~l~~sR~~G 201 (201)
.. +|++|.+++||+||
T Consensus 163 ~~-----~Rv~G~l~vTRalG 178 (381)
T PTZ00224 163 VS-----NRVDGDLAVSRAFG 178 (381)
T ss_pred cc-----ccccCceeeecccC
Confidence 86 79999999999998
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=1.7e-29 Score=208.68 Aligned_cols=164 Identities=26% Similarity=0.229 Sum_probs=135.0
Q ss_pred CCceEEEEEeecCCCCCCCCccEEEEeeecCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCC----CCC--HHHH
Q 028930 29 VGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF----WVD--PQRS 102 (201)
Q Consensus 29 ~~~~~~~~~s~~G~~r~~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~----~~~--~~~~ 102 (201)
...+.+...++.|..|+.|||++.+........ ..+|+|||||||..+++++++.+.+.+.+.... ... +.+.
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~ 83 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEEL 83 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Confidence 456789999999999999999987666333333 679999999999999998888888777765221 111 6799
Q ss_pred HHHHHHHHHHHHHhcCC--CCCCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHHHhCCC
Q 028930 103 ISKAYEKTDQAILSHSS--DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGG 178 (201)
Q Consensus 103 l~~~f~~~~~~l~~~~~--~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri~~agg 178 (201)
+.+++..+|+.+..... .....+|||++++++.++++|+|||||||+|+++++.++|||+||++ ..|+.|+...++
T Consensus 84 l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~ 163 (262)
T COG0631 84 LKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEE 163 (262)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHH
Confidence 99999999999998653 33478999999999999999999999999999999999999999999 677777777776
Q ss_pred eEEeCCCCcceeeceeeecccCC
Q 028930 179 FVSNMPEYQVILVGIINLICPFP 201 (201)
Q Consensus 179 ~i~~~~~~~~rv~G~l~~sR~~G 201 (201)
.+.. +|.+ ++||+||
T Consensus 164 ~~~~-----~~~~---~ltralG 178 (262)
T COG0631 164 ARSH-----PRRN---ALTRALG 178 (262)
T ss_pred HHhC-----ccch---hhhhhcC
Confidence 6665 4666 8999987
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=5.7e-29 Score=207.10 Aligned_cols=75 Identities=40% Similarity=0.561 Sum_probs=68.5
Q ss_pred CCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHHHhCCCeEEeCCCCcceeeceeeecccC
Q 028930 123 RGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGGFVSNMPEYQVILVGIINLICPF 200 (201)
Q Consensus 123 ~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri~~agg~i~~~~~~~~rv~G~l~~sR~~ 200 (201)
..+|||.+++++.++++||||.||||++++|.|+.+-||.||+| ..|..||..+||.|+- . +||||.|++||+|
T Consensus 328 ~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl-D---GRVNGGLNLSRA~ 403 (542)
T KOG0699|consen 328 EDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL-D---GRVNGGLNLSRAF 403 (542)
T ss_pred CCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee-c---ceecCccchhhhh
Confidence 45667777779999999999999999999999999999999999 7788999999999993 2 6999999999999
Q ss_pred C
Q 028930 201 P 201 (201)
Q Consensus 201 G 201 (201)
|
T Consensus 404 G 404 (542)
T KOG0699|consen 404 G 404 (542)
T ss_pred h
Confidence 8
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.94 E-value=5.4e-25 Score=179.56 Aligned_cols=163 Identities=38% Similarity=0.581 Sum_probs=135.6
Q ss_pred ceEEEEEeecCCCCCCCCccEEEEeeecCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCC----CHHHHHHHH
Q 028930 31 LVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV----DPQRSISKA 106 (201)
Q Consensus 31 ~~~~~~~s~~G~~r~~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~----~~~~~l~~~ 106 (201)
.+.+++.+..|+ |.+|||++++.... ..+..+|+|||||||..+|.+++..+...+.+...... .+.+.|+++
T Consensus 5 ~~~~~~~~~~~~-r~~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (255)
T smart00332 5 GLRYGLSSMQGV-RKPMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKA 81 (255)
T ss_pred ceeEEEecCCCC-CCCCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHH
Confidence 366777666666 79999998654321 24578999999999999999999999888776543332 478889999
Q ss_pred HHHHHHHHHhcCCCC--CCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHHHhCCCeEEe
Q 028930 107 YEKTDQAILSHSSDL--GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGGFVSN 182 (201)
Q Consensus 107 f~~~~~~l~~~~~~~--~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri~~agg~i~~ 182 (201)
+.++++.+....... ...++||++++++.++++|++|+||||+|+++++++.+||+||++ ..|..||...++.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 161 (255)
T smart00332 82 FLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 161 (255)
T ss_pred HHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC
Confidence 999999998754432 256889988889999999999999999999999999999999999 7899999999999886
Q ss_pred CCCCcceeeceeeecccCC
Q 028930 183 MPEYQVILVGIINLICPFP 201 (201)
Q Consensus 183 ~~~~~~rv~G~l~~sR~~G 201 (201)
++..+...+||++|
T Consensus 162 -----~~~~~~~~lt~~~g 175 (255)
T smart00332 162 -----GRVNGVLALSRAIG 175 (255)
T ss_pred -----CeECCeEecccccC
Confidence 58888899999987
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.94 E-value=4.3e-25 Score=179.54 Aligned_cols=162 Identities=36% Similarity=0.498 Sum_probs=131.6
Q ss_pred EEEEEeecCCCCCCCCccEEEEeeecCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCC-----CCCHHHHHHHHH
Q 028930 33 KFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----WVDPQRSISKAY 107 (201)
Q Consensus 33 ~~~~~s~~G~~r~~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~-----~~~~~~~l~~~f 107 (201)
.++..+..|. |+.|||++++...... .++.+|+|+|||||...++++++.+...+.+.... ...+...|+++|
T Consensus 2 ~~~~~~~~g~-r~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGD-RKTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCC-CCCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 4566677777 6899999865543211 25789999999999999999888888877765332 235678899999
Q ss_pred HHHHHHHHhcCC--CCCCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCC--hhHHHHHHhCCCeEEeC
Q 028930 108 EKTDQAILSHSS--DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGGFVSNM 183 (201)
Q Consensus 108 ~~~~~~l~~~~~--~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~--~~E~~Ri~~agg~i~~~ 183 (201)
..+++.+..... .....++||++++++.+++++++|+||||+|++++++++++|.||++ +.|+.||...+|++..
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~- 158 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN- 158 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe-
Confidence 999999987543 23356788888888999999999999999999999999999999999 5899999999998764
Q ss_pred CCCcceeeceeeecccCC
Q 028930 184 PEYQVILVGIINLICPFP 201 (201)
Q Consensus 184 ~~~~~rv~G~l~~sR~~G 201 (201)
.+..+...+||+||
T Consensus 159 ----~~~~~~~~~t~~lG 172 (254)
T cd00143 159 ----GRVPGVLAVTRALG 172 (254)
T ss_pred ----CEEcCceeeccccC
Confidence 57778888999887
No 10
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-25 Score=188.85 Aligned_cols=151 Identities=33% Similarity=0.470 Sum_probs=116.0
Q ss_pred CCCccEEEEeeecCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccC-------------------------------
Q 028930 46 PMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEE------------------------------- 94 (201)
Q Consensus 46 ~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~------------------------------- 94 (201)
.-||++-+. ...++++.|+||||||+|.++++++.++|+.++..+..
T Consensus 84 ~~edrv~~~--~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVA--VSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceee--eeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 466775332 23357899999999999999999999999998872210
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHhc-------CCCCCCCccceEEEEEEeCCEEEEEEcccccEEEEe---CC---eeE
Q 028930 95 ---FWVDPQRSISKAYEKTDQAILSH-------SSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLST---AG---VAV 158 (201)
Q Consensus 95 ---~~~~~~~~l~~~f~~~~~~l~~~-------~~~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~---~g---~~~ 158 (201)
....+.++|.+||.++++.+... .......|+|++++ ++.+..+||||+|||||+|.. ++ .+.
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~-~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~ 240 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVG-LIKGGDLYVANVGDSRAVLGVVENNGSWLVAV 240 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEE-EEeCCeEEEEecCcchhhhceecCCCCeEEEE
Confidence 03456899999999999999753 22233566666665 889999999999999999975 23 579
Q ss_pred eCCCCCCC--hhHHHHHHhCC---CeEEeCCCCcceeeceeeecccCC
Q 028930 159 QMTTDHEP--NTERGSIEDKG---GFVSNMPEYQVILVGIINLICPFP 201 (201)
Q Consensus 159 ~Lt~dH~~--~~E~~Ri~~ag---g~i~~~~~~~~rv~G~l~~sR~~G 201 (201)
|||.||+. ++|+.||+..- -.+..... +||.|.|.||||||
T Consensus 241 qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~--~RvkG~L~vsRAfG 286 (390)
T KOG0700|consen 241 QLSTDHNASNEDEVRRIRSEHPDDPHIVVNKH--WRVKGILQVSRAFG 286 (390)
T ss_pred ecChhhccccHHHHHHHHHhCCCCcceEeecc--ceeeEEEEeeeecc
Confidence 99999999 89999998853 23332222 59999999999998
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.93 E-value=6.1e-25 Score=199.32 Aligned_cols=163 Identities=22% Similarity=0.195 Sum_probs=112.2
Q ss_pred ceEEEEEeecCCCCCCCCccEEEEeee-----cCC---CceEEEEEecCCCCChH----HHHHHHHHHHHHHhccCCCCC
Q 028930 31 LVKFGFSLVKGKANHPMEDYHVAKFVQ-----LQG---HELGLFAIYDGHLGETV----PAYLQKHLFSNILKEEEFWVD 98 (201)
Q Consensus 31 ~~~~~~~s~~G~~r~~nED~~~~~~~~-----~~~---~~~~~~~V~DGhgG~~~----A~~~~~~l~~~l~~~~~~~~~ 98 (201)
.+.++..|++|.+|+.|||++.+.... ..+ ....+|+|||||||... |++++..+...+.+.......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 478899999999899999997553211 111 13568999999998664 344445544444332111112
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCCCccceEEEEEEeCCEEEEEEcccccEEEE-eCCeeEeCCCCCCC-hhHHHH
Q 028930 99 PQRSISKAYEKTDQAILSHSSD----LGRGGSTAVTAILINGQRLWVANVGDSRAVLS-TAGVAVQMTTDHEP-NTERGS 172 (201)
Q Consensus 99 ~~~~l~~~f~~~~~~l~~~~~~----~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~-~~g~~~~Lt~dH~~-~~E~~R 172 (201)
..+.|+++|..+|+.|.+.... ....+|||++++++.++++|++||||||+|++ ++|+++|||+||++ ..+.++
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~ 533 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQR 533 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHh
Confidence 4678999999999999874321 22468999999999999999999999999988 57899999999999 444333
Q ss_pred HHhCCCeEEeCCCCcceeeceeeecccCC
Q 028930 173 IEDKGGFVSNMPEYQVILVGIINLICPFP 201 (201)
Q Consensus 173 i~~agg~i~~~~~~~~rv~G~l~~sR~~G 201 (201)
| +..... ..| .+...+||+||
T Consensus 534 ----G--i~~~~a-~~~-p~~~~LTrALG 554 (645)
T PRK14559 534 ----G--VEPQIA-YAR-PDAYQLTQALG 554 (645)
T ss_pred ----C--CCHHHH-hcC-cccceeeeccC
Confidence 2 221000 113 24567888887
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.77 E-value=2.2e-18 Score=142.77 Aligned_cols=118 Identities=24% Similarity=0.376 Sum_probs=91.4
Q ss_pred CCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccC----------------CC------------------C------C
Q 028930 59 QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEE----------------FW------------------V------D 98 (201)
Q Consensus 59 ~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~----------------~~------------------~------~ 98 (201)
+..+..+|.+||||.|..+|-.+...+..++.++.. +. . -
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 346778999999999999887776666555543311 00 0 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEEEEeCCEEEEEEcccccEEEEeCCeeEeCCCCCCChhHHHHHHhC
Q 028930 99 PQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDK 176 (201)
Q Consensus 99 ~~~~l~~~f~~~~~~l~~~~~~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~~~E~~Ri~~a 176 (201)
+.-+|+.||+++|+.|..........||||.++++.--+++|+||.|||||+|.|++++++||++.+|+.||+||++.
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~L 297 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQEL 297 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHH
Confidence 247899999999999988766555555555444454445999999999999999999999999999999999999875
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.57 E-value=2.5e-14 Score=114.06 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=68.2
Q ss_pred EeecCCCCCCCCccEEEEeeecCCCceEEEEEecCCCCChHHHHH----HHHHHHHHHhccCCCC-C-HHHHHHHHHHHH
Q 028930 37 SLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYL----QKHLFSNILKEEEFWV-D-PQRSISKAYEKT 110 (201)
Q Consensus 37 ~s~~G~~r~~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~----~~~l~~~l~~~~~~~~-~-~~~~l~~~f~~~ 110 (201)
.+++|+ +++|||++.+... .+..+++|+||+++...+... +..+.+.+........ . ..+.++.+..++
T Consensus 3 ~sh~~~-~~~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGR-GAPNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TT-SSS--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCC-CCCCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 467788 6899999863322 334566999999986665554 4444444443332211 1 122233333333
Q ss_pred HHHH-----HhcCCCCCCCccceEEEEEEeCCEEEEEEcccccEEE-EeCCeeEeCCCCCCC
Q 028930 111 DQAI-----LSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVL-STAGVAVQMTTDHEP 166 (201)
Q Consensus 111 ~~~l-----~~~~~~~~~~g~Ttl~~~~i~~~~l~vanvGDSra~l-~~~g~~~~Lt~dH~~ 166 (201)
...+ ..........++||++++++.++.++++|+||||+|+ .+++.+.+++.||+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~ 139 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG 139 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc
Confidence 3221 1111223456789999999999999999999999965 589999999999984
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=6.4e-13 Score=122.70 Aligned_cols=165 Identities=21% Similarity=0.284 Sum_probs=129.9
Q ss_pred CCCceEEEEEeecCCCCCCCCccEEEEeeecCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Q 028930 28 NVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 107 (201)
Q Consensus 28 ~~~~~~~~~~s~~G~~r~~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~~~~~~l~~~f 107 (201)
...-+.+|++...|.+.+ +-=+.. +....-+.+-..|+.+||-+..++.+.+...+.+.+.++.....+-.+.|+++|
T Consensus 518 n~~~~t~Gv~~~~gqrnk-~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~f 595 (1081)
T KOG0618|consen 518 NAFLWTYGVAGVSGQRNK-VCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTF 595 (1081)
T ss_pred ceeheeeccchhcccccc-hhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 344566999999999533 322211 222222355689999999999999999999999999988776666677799999
Q ss_pred HHHHHHHHhcCCCCCCCccceEEEEEEeC-------CEEEEEEcccccEEEEeCCeeEeCCCCCCC---hhHHHHHHhCC
Q 028930 108 EKTDQAILSHSSDLGRGGSTAVTAILING-------QRLWVANVGDSRAVLSTAGVAVQMTTDHEP---NTERGSIEDKG 177 (201)
Q Consensus 108 ~~~~~~l~~~~~~~~~~g~Ttl~~~~i~~-------~~l~vanvGDSra~l~~~g~~~~Lt~dH~~---~~E~~Ri~~ag 177 (201)
..+|+++...+.. .|+..+.+-+..+ .++++||+|+|.++++++|+..++|+.... ++|.+||+..+
T Consensus 596 l~~~rklg~~g~~---lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~ 672 (1081)
T KOG0618|consen 596 LRLNRKLGEEGQV---LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSK 672 (1081)
T ss_pred HHHhhhhhhhhcc---ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhc
Confidence 9999999766653 3666666544332 368999999999999999999999887644 89999999999
Q ss_pred CeEEeCCCCcceeeceeeecccCC
Q 028930 178 GFVSNMPEYQVILVGIINLICPFP 201 (201)
Q Consensus 178 g~i~~~~~~~~rv~G~l~~sR~~G 201 (201)
|+|.+ -++++|++..||++|
T Consensus 673 g~i~e----d~k~ngvt~~tR~iG 692 (1081)
T KOG0618|consen 673 GFITE----DNKLNGVTSSTRAIG 692 (1081)
T ss_pred CeecC----CCeeeceeeeeeecc
Confidence 99995 179999999999998
No 15
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.18 E-value=3.1e-10 Score=94.13 Aligned_cols=109 Identities=23% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCccEEEEeeecCCCceEEEEEecCCCCChH----HHHHHHHHHHHHH----hccCCCCCHHHHHHHHHHHHHHHHHhc
Q 028930 46 PMEDYHVAKFVQLQGHELGLFAIYDGHLGETV----PAYLQKHLFSNIL----KEEEFWVDPQRSISKAYEKTDQAILSH 117 (201)
Q Consensus 46 ~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~----A~~~~~~l~~~l~----~~~~~~~~~~~~l~~~f~~~~~~l~~~ 117 (201)
..||++++.-. ....++||+||.||+.- +.+.+.+|+.... .......++...|..++.++- ++
T Consensus 90 ~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~----~~ 161 (330)
T KOG1379|consen 90 GGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELK----SQ 161 (330)
T ss_pred CCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHh----hc
Confidence 68999976543 45679999999887322 3344444544443 223334478888888877753 22
Q ss_pred CCCCCCCccceEEEEEEe--CCEEEEEEcccccEEEEeCCeeEeCCCCC
Q 028930 118 SSDLGRGGSTAVTAILIN--GQRLWVANVGDSRAVLSTAGVAVQMTTDH 164 (201)
Q Consensus 118 ~~~~~~~g~Ttl~~~~i~--~~~l~vanvGDSra~l~~~g~~~~Lt~dH 164 (201)
. ....|++|.++++++ +.+||+||+|||-..++|+|++.+-|...
T Consensus 162 ~--~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q 208 (330)
T KOG1379|consen 162 K--VPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQ 208 (330)
T ss_pred C--CCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchh
Confidence 2 123455555555666 78999999999999999999876655543
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.17 E-value=2.4e-09 Score=84.04 Aligned_cols=112 Identities=21% Similarity=0.094 Sum_probs=78.7
Q ss_pred CCCCccEEEEeeecCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 028930 45 HPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRG 124 (201)
Q Consensus 45 ~~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~~~~~~l~~~f~~~~~~l~~~~~~~~~~ 124 (201)
...-|.+-+.... .+..+++|+||||++..|.+++..+...+.+...... .+.+.+..+|+.+..... ..
T Consensus 15 ~~~GD~~~~~~~~---~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n~~l~~~~~---~~ 84 (193)
T smart00331 15 QVGGDFYDVVKLP---EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLNRAIYENGE---DG 84 (193)
T ss_pred hcCccEEEEEEeC---CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHhcCC---CC
Confidence 4688887443321 3368899999999999998888887777765433222 256677788888877522 23
Q ss_pred ccceEEEEEE--eCCEEEEEEcccccEEEEe-CCeeEeCCCCCCC
Q 028930 125 GSTAVTAILI--NGQRLWVANVGDSRAVLST-AGVAVQMTTDHEP 166 (201)
Q Consensus 125 g~Ttl~~~~i--~~~~l~vanvGDSra~l~~-~g~~~~Lt~dH~~ 166 (201)
.++|++++++ ..++++++|+||+|+|+++ ++...+++.+.++
T Consensus 85 ~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~ 129 (193)
T smart00331 85 MFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGA 129 (193)
T ss_pred cEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCc
Confidence 5666666566 6779999999999999998 6666666665554
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.17 E-value=3.4e-05 Score=72.79 Aligned_cols=113 Identities=14% Similarity=0.012 Sum_probs=75.3
Q ss_pred CCCCCccEEEEeeecCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 028930 44 NHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGR 123 (201)
Q Consensus 44 r~~nED~~~~~~~~~~~~~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~~~~~~l~~~f~~~~~~l~~~~~~~~~ 123 (201)
+..+.|.+.+... . .+..+++|+||.|.+..|...+....+.+.+......+ ...++..+|..+.....+
T Consensus 564 ~~vsGD~y~~~~l-~--~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~~--- 633 (764)
T TIGR02865 564 ELVSGDSYSFGKL-S--AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRSTD--- 633 (764)
T ss_pred CcccCceEEEEEE-C--CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCCC---
Confidence 4578999743322 1 33478899999997777766554443333221111112 366777888877654322
Q ss_pred CccceEEEEEEe--CCEEEEEEcccccEEEEeCCeeEeCCCCCCC
Q 028930 124 GGSTAVTAILIN--GQRLWVANVGDSRAVLSTAGVAVQMTTDHEP 166 (201)
Q Consensus 124 ~g~Ttl~~~~i~--~~~l~vanvGDSra~l~~~g~~~~Lt~dH~~ 166 (201)
...+|+.+++++ .+++.++|+|+++.|+.+++.+.+++..+-|
T Consensus 634 ~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP 678 (764)
T TIGR02865 634 EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP 678 (764)
T ss_pred CeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce
Confidence 245666665664 6799999999999999999999999887776
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.80 E-value=0.00054 Score=53.28 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=63.0
Q ss_pred ceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEEEEe--CCEE
Q 028930 62 ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILIN--GQRL 139 (201)
Q Consensus 62 ~~~~~~V~DGhgG~~~A~~~~~~l~~~l~~~~~~~~~~~~~l~~~f~~~~~~l~~~~~~~~~~g~Ttl~~~~i~--~~~l 139 (201)
+..++.|+|+.|-+-.|..++..+...+........+ ..+.+..+|+.+....... ...+|++++.+. .+++
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTL 76 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEE
Confidence 4578899999887777776666655555433222222 5666777788775433322 133444444443 5689
Q ss_pred EEEEcccccEEEEeC--CeeEeCCCCCCC
Q 028930 140 WVANVGDSRAVLSTA--GVAVQMTTDHEP 166 (201)
Q Consensus 140 ~vanvGDSra~l~~~--g~~~~Lt~dH~~ 166 (201)
+++|+|+++++++++ +....+.....|
T Consensus 77 ~~~~aG~~~~l~~~~~~~~~~~~~~~~~~ 105 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGGREIEQLESEGPP 105 (193)
T ss_dssp EEEEESSSEEEEEETTCTEEEEETCSSBB
T ss_pred EEeCCCCCCEEEEeccccceeecccCccc
Confidence 999999999999998 555555554444
No 19
>PRK10693 response regulator of RpoS; Provisional
Probab=37.69 E-value=2.4e+02 Score=23.48 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=51.2
Q ss_pred EEecCCCCC-hHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEEEEe--CCEEEEE
Q 028930 67 AIYDGHLGE-TVPAYLQKHLFSNILKEEE-FWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILIN--GQRLWVA 142 (201)
Q Consensus 67 ~V~DGhgG~-~~A~~~~~~l~~~l~~~~~-~~~~~~~~l~~~f~~~~~~l~~~~~~~~~~g~Ttl~~~~i~--~~~l~va 142 (201)
+=+-|||+. ..|..+...++..++.... ..........+.+..+|+.+.+..... .- |++..+++ .+++.++
T Consensus 169 ~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~---~~-t~~~~~~d~~~~~l~~~ 244 (303)
T PRK10693 169 LDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG---QF-PLLVGYYHRELKNLILV 244 (303)
T ss_pred EecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc---ee-eEEEEEEEcCCCeEEEE
Confidence 346688854 3445555555555544311 000000013556677888887753222 12 44433444 4589999
Q ss_pred EcccccEEEEeCCeeEeCCCCCCC
Q 028930 143 NVGDSRAVLSTAGVAVQMTTDHEP 166 (201)
Q Consensus 143 nvGDSra~l~~~g~~~~Lt~dH~~ 166 (201)
|.|-...++..++.+ .++ ...|
T Consensus 245 ~AGhp~~~~~~~~~~-~~~-~g~p 266 (303)
T PRK10693 245 SAGLNATLNTGEHQV-QLS-NGVP 266 (303)
T ss_pred eCCCCCEEecCCeEE-Eec-CCCc
Confidence 999999886555555 343 4555
No 20
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=27.25 E-value=53 Score=20.40 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.7
Q ss_pred hhHHHHHHhCCCeEEe
Q 028930 167 NTERGSIEDKGGFVSN 182 (201)
Q Consensus 167 ~~E~~Ri~~agg~i~~ 182 (201)
..|.+||.+.||+|..
T Consensus 37 s~~~q~I~r~GGkIvs 52 (56)
T PF01383_consen 37 SQEMQRINRQGGKIVS 52 (56)
T ss_dssp HHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHHCCCEEEE
Confidence 7899999999999986
No 21
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=26.12 E-value=1.2e+02 Score=16.47 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=14.1
Q ss_pred CCEEEEEEcccccEEEEe
Q 028930 136 GQRLWVANVGDSRAVLST 153 (201)
Q Consensus 136 ~~~l~vanvGDSra~l~~ 153 (201)
++++|++|-|+..+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 457899998888887774
No 22
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=20.41 E-value=1.4e+02 Score=22.13 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=9.1
Q ss_pred EEEecCCCCCh
Q 028930 66 FAIYDGHLGET 76 (201)
Q Consensus 66 ~~V~DGhgG~~ 76 (201)
++|.||.||+-
T Consensus 2 I~VIDGQGGGi 12 (131)
T PF12953_consen 2 IAVIDGQGGGI 12 (131)
T ss_pred EEEEeCCCChh
Confidence 57999999873
Done!