RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 028931
(201 letters)
>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22.
Length = 117
Score = 202 bits (517), Expect = 6e-68
Identities = 79/116 (68%), Positives = 93/116 (80%)
Query: 77 NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSA 136
K EV A A+Y+ MSAHK RRVIDQIRGRSYEE LMILE MPYRACYPI KL+YSA
Sbjct: 2 MKKKSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSA 61
Query: 137 AANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDM 192
AAN HNMG N+A+L I+KAEV+E + KR RP+AQGR + IK+PTCHIT+VL+D+
Sbjct: 62 AANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGRSYPIKKPTCHITIVLKDI 117
>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed.
Length = 112
Score = 137 bits (348), Expect = 3e-42
Identities = 46/108 (42%), Positives = 67/108 (62%)
Query: 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
E A ARY+ +S K R V D IRG+ EE L IL+ P +A + K++ SA AN +N
Sbjct: 2 EAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
G + +LV+ +A V+E + KR RP+A+GR I++ T HITVV+ +
Sbjct: 62 HGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAE 109
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e. This family
includes L22 from prokaryotes and chloroplasts and L17
from eukaryotes.
Length = 105
Score = 134 bits (340), Expect = 4e-41
Identities = 47/105 (44%), Positives = 66/105 (62%)
Query: 87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
A ARY+ +S K R V D IRG+S EE L ILE +P +A I KL+ SA AN +N G
Sbjct: 1 AVARYIRISPKKARLVADLIRGKSVEEALAILEFVPKKAAKIILKLLKSAVANAENNKGL 60
Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
+ +L I + V++ + KR RP+A+GR I++ T HIT+VL +
Sbjct: 61 DPDNLYIKEIFVDKGPTLKRFRPRARGRATPIRKRTSHITIVLSE 105
>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e. L22 (L17 in
eukaryotes) is a core protein of the large ribosomal
subunit. It is the only ribosomal protein that
interacts with all six domains of 23S rRNA, and is one
of the proteins important for directing the proper
folding and stabilizing the conformation of 23S rRNA.
L22 is the largest protein contributor to the surface of
the polypeptide exit channel, the tunnel through which
the polypeptide product passes. L22 is also one of six
proteins located at the putative translocon binding site
on the exterior surface of the ribosome.
Length = 105
Score = 124 bits (315), Expect = 2e-37
Identities = 46/105 (43%), Positives = 61/105 (58%)
Query: 85 VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNM 144
A RYL +S K R V IRG S +E L LE +P +A I KL+ SA AN +N
Sbjct: 1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNG 60
Query: 145 GFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
+ L I +VN+ + KR RP+A+GR + I++ TCHITVVL
Sbjct: 61 LDDPDKLYIKHIQVNKGPTLKRRRPRARGRANPIRKRTCHITVVL 105
>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal
structure and biogenesis].
Length = 120
Score = 115 bits (291), Expect = 1e-33
Identities = 46/114 (40%), Positives = 65/114 (57%)
Query: 78 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
K + E A ARYL +S K R V D IRG+ E L ILE +P +A + K++ SA
Sbjct: 4 KVEPEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAI 63
Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
AN +N G + LV++ V++ KR P+A+GR I + T HITVV+R+
Sbjct: 64 ANAENNKGLDPDKLVVSHIAVDKGPVLKRFMPRARGRATRINKRTSHITVVVRE 117
>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type. This
model decribes bacterial and chloroplast ribosomal
protein L22 [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 103
Score = 101 bits (253), Expect = 4e-28
Identities = 44/103 (42%), Positives = 62/103 (60%)
Query: 87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
A AR++ +S K R V D IRG+S + L IL P +A I K++ SA AN HN G
Sbjct: 1 AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGL 60
Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVL 189
+ +LV+ V+E + KR RP+A+GR I++ T HITVV+
Sbjct: 61 DADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITVVV 103
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 57.0 bits (137), Expect = 6e-10
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 90 RYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEA 149
R +H+S K VID +R + E + IL P + + KL+ SA +N HN +
Sbjct: 8 RNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHNSKDMDP 67
Query: 150 S-LVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
S L I K N+ + KR P+A+G + + T H+ +VL D
Sbjct: 68 SKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSD 110
>gnl|CDD|211620 TIGR01038, L22_arch, ribosomal protein
L22(archaeal)/L17(eukaryotic/archaeal). This model
describes the ribosomal protein of the eukaryotic
cytosol and of the Archaea, variously designated as L17,
L22, and L23. The corresponding bacterial homolog,
described by a separate model, is designated L22
[Protein synthesis, Ribosomal proteins: synthesis and
modification].
Length = 150
Score = 39.4 bits (92), Expect = 3e-04
Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 38/151 (25%)
Query: 73 PNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE-------LMPYR- 124
P + K+ K A R L +S R IRG ++ LE +P+R
Sbjct: 5 PEDPTKSAK-----ARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRR 59
Query: 125 ------------------ACYP------IFKLIYSAAANGVHNMGFNEASLVIAKAEVNE 160
YP I K++ +A AN G + LVI + N+
Sbjct: 60 YNGKVGHRRGLKEWGWTAGRYPVKAAKFILKVLQNAEANA-EYKGLDVEKLVIIHIQANK 118
Query: 161 ATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
+R P+A GR HI +V+ +
Sbjct: 119 GPKIRRWMPRAFGRATPYNSSPTHIELVVEE 149
>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed.
Length = 153
Score = 35.6 bits (83), Expect = 0.006
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 122 PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRP 181
P +A KL+ +A AN + G + LVI ++ K P+A GR
Sbjct: 83 PVKAAKAFLKLLENAEANAEYK-GLDTEKLVIVHIAAHKGRVIKGYMPRAFGRATPKNTE 141
Query: 182 TCHITVVLRD 191
T +I V+L +
Sbjct: 142 TVNIEVILEE 151
>gnl|CDD|240306 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional.
Length = 181
Score = 33.9 bits (78), Expect = 0.024
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 122 PYRACYPIFKLIYSAAANG-VHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKR 180
P ++ + L+ +A AN + + LVI+ +VN A +R +A GR++
Sbjct: 84 PEKSVKFVLSLLKNAEANAEAKGL--DVEKLVISHVQVNRAPRGRRRTYRAHGRINPFMS 141
Query: 181 PTCHITVVLR 190
CHI ++
Sbjct: 142 SPCHIELIAT 151
>gnl|CDD|217188 pfam02689, Herpes_Helicase, Helicase. This family consists of
Helicases from the Herpes viruses. Helicases are
responsible for the unwinding of DNA and are essential
for replication and completion of the viral life cycle.
Length = 801
Score = 29.2 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 91 YLHM-SAHKVRRVIDQIRGRSYEETLMILELMPYRA 125
L+M S KVR ++++IR S E T +L +R+
Sbjct: 8 ILNMTSMAKVRPIVERIRELSAERTAPPPDLSWFRS 43
>gnl|CDD|225953 COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin
PilY1 [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 1036
Score = 28.6 bits (64), Expect = 2.3
Identities = 8/41 (19%), Positives = 10/41 (24%)
Query: 132 LIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQ 172
L SA F + L V + P Q
Sbjct: 295 LGDSAHTYNARPDTFGDVQLTTYWLAVVSKPNGTSPVGLNQ 335
>gnl|CDD|223040 PHA03311, PHA03311, helicase-primase subunit BBLF4; Provisional.
Length = 782
Score = 28.3 bits (64), Expect = 3.2
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 91 YLHM-SAHKVRRVIDQIRGRS 110
L+M S K+R ++D+IR S
Sbjct: 17 ILNMTSMAKIRPIVDRIRSLS 37
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 27.4 bits (61), Expect = 6.2
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 12/59 (20%)
Query: 62 ISSAQKRGI----SPPNNRNKTNKKAEVSASARYLHMSAHK--------VRRVIDQIRG 108
+ Q+ G+ P R + + ++ AR LH A + +R I+ I G
Sbjct: 1853 LEELQQHGLLDGPPAPGARARAVTEEDIRQLARTLHARARQAEARITPMLRAAIEGIGG 1911
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.374
Gapped
Lambda K H
0.267 0.0861 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,915,025
Number of extensions: 878282
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 25
Length of query: 201
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 109
Effective length of database: 6,857,034
Effective search space: 747416706
Effective search space used: 747416706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.1 bits)