RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028931
(201 letters)
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 199
Score = 175 bits (445), Expect = 4e-56
Identities = 76/124 (61%), Positives = 95/124 (76%)
Query: 75 NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
+ + K E++ + MS K RRVIDQIRGRSY ETLMILELMPYRACYPIFKLIY
Sbjct: 22 HHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIY 81
Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRDMSL 194
SAAAN HN FN+A+L+I+KAEVN+ + K+ +P+A+GR +MI RPTCHIT+VLRD++
Sbjct: 82 SAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGRSYMILRPTCHITIVLRDITH 141
Query: 195 DDEY 198
D Y
Sbjct: 142 FDSY 145
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L*
1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q*
2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P*
1pnu_Q 1pny_Q 1vor_T ...
Length = 134
Score = 167 bits (425), Expect = 8e-54
Identities = 40/130 (30%), Positives = 74/130 (56%)
Query: 62 ISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM 121
+++ ++ + + + + A A+Y+ MS KVR V+D IRG+S ++ +L +
Sbjct: 1 MTAPEQTFRNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFI 60
Query: 122 PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRP 181
P A P+ K++ SA AN +HN E L + +A V+ + KR P+A+G ++IK+
Sbjct: 61 PRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKR 120
Query: 182 TCHITVVLRD 191
T HIT+++ +
Sbjct: 121 TSHITIIVAE 130
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA
binding, RNA binding protein; 1.80A {Thermus
thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s*
1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V
2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W
2wdj_W ...
Length = 110
Score = 148 bits (376), Expect = 1e-46
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
E A ARY+ +S KVR V+D IRG+S EE IL R Y + K++ SAAAN V+N
Sbjct: 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
E L + A V+E P+A+GR +IK+ T HITV+L +
Sbjct: 62 HDALEDRLYVKAAYVDE---GPAVLPRARGRADIIKKRTSHITVILGE 106
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S
2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S
2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Length = 110
Score = 141 bits (359), Expect = 4e-44
Identities = 44/108 (40%), Positives = 58/108 (53%)
Query: 84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
E A R+ SA KVR V D IRG+ + L IL +A + K++ SA AN HN
Sbjct: 2 ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
G + L + K V+E S KR P+A+GR I + T HITVV+ D
Sbjct: 62 DGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 109
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial
ribosome, large ribosomal subunit, ribosomal R ribosome;
12.10A {Bos taurus} PDB: 3iy9_M
Length = 110
Score = 123 bits (311), Expect = 7e-37
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 89 ARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNE 148
R + S K+ + IRG S ++ L LE + I +++ A V +
Sbjct: 3 RRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEF 62
Query: 149 AS-LVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
S L IA++ KR R +GR ++++ CH V L +
Sbjct: 63 RSNLYIAESTSGRGQCLKRIRYHGRGRFGIMEKVYCHYFVKLVE 106
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R*
1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R*
1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R*
1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Length = 155
Score = 92.2 bits (229), Expect = 4e-24
Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 31/149 (20%)
Query: 78 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------ 119
+ + A R MS + + +I+G++ E + LE
Sbjct: 8 EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 67
Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
P +A L+ +A N + GF+ ++ I ++ +
Sbjct: 68 GHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGR 126
Query: 168 RPKAQGRVHMIKRPTCHITVVLRDMSLDD 196
+P+A GR P + ++L + ++D
Sbjct: 127 KPRAMGRASAWNSPQVDVELILEEPEVED 155
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_V
Length = 171
Score = 83.8 bits (207), Expect = 9e-21
Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 34/149 (22%)
Query: 76 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE-------LMPYR---- 124
R N A R L + R IR + LE +P+R
Sbjct: 6 REANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCG 65
Query: 125 ----------------------ACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT 162
+ I L+ +A +N G + +L ++ +VN+A
Sbjct: 66 GVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAE-VKGLDVDTLYVSHIQVNQAQ 124
Query: 163 SAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
+R +A GR++ CHI ++L +
Sbjct: 125 KQRRRTYRAHGRINPYMSSPCHIELILSE 153
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 83.5 bits (206), Expect = 2e-20
Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 33/148 (22%)
Query: 76 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM-------------- 121
R N+ V SA L + V+ I+G + E L+ +
Sbjct: 8 REPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTG 67
Query: 122 ------------------PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATS 163
P ++ I L+ + +AN N A+LVI +VN A
Sbjct: 68 CIGRTAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQA-KSLNTANLVIQHGQVNRAQK 126
Query: 164 AKRPRPKAQGRVHMIKRPTCHITVVLRD 191
+R +A GR++ CH+ + ++
Sbjct: 127 GRRRTYRAHGRINPYLNSGCHVEIFAQE 154
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 77.3 bits (190), Expect = 3e-18
Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 33/148 (22%)
Query: 76 RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM-------------- 121
TN SA YL +S R I G + LE +
Sbjct: 6 ATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNS 65
Query: 122 ------------------PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATS 163
P ++ + L+ +AAAN G + L ++ +VN+A
Sbjct: 66 SIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAE-AKGLDATKLYVSHIQVNQAPK 124
Query: 164 AKRPRPKAQGRVHMIKRPTCHITVVLRD 191
+R +A GR++ + HI +V+ +
Sbjct: 125 QRRRTYRAHGRINKYESSPSHIELVVTE 152
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 76.9 bits (189), Expect = 5e-18
Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 33/144 (22%)
Query: 80 NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE-------------------- 119
N + L + R I+G + L+
Sbjct: 10 NPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGR 69
Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
P ++ + ++ +A +N G + SLVI +VN+A +R
Sbjct: 70 CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAEL-KGLDVDSLVIEHIQVNKAPKMRRR 128
Query: 168 RPKAQGRVHMIKRPTCHITVVLRD 191
+A GR++ CHI ++L +
Sbjct: 129 TYRAHGRINPYMSSPCHIEMILTE 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.015
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 32/160 (20%)
Query: 23 QLDHNPLILRRDQAGFTSR-----TDFSRKLSHT---HNEIFNSKKIISSAQKRGISPPN 74
H ++ + T + KL + H I + I + + PP
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 75 NRN----------KTNKKAEVSASAR--YLHMS--AHKVRRVIDQIRGRSYEETLMILEL 120
K + E R +L K+R + +L
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQL 527
Query: 121 MPYRACY-----PIFKLIYSAAANGVHNMGFNEASLVIAK 155
Y+ Y P ++ + +A + + + E +L+ +K
Sbjct: 528 KFYKP-YICDNDPKYERLVNAILDFLPKI---EENLICSK 563
Score = 31.4 bits (70), Expect = 0.20
Identities = 38/261 (14%), Positives = 76/261 (29%), Gaps = 93/261 (35%)
Query: 8 RILLPSPP-PTCLATRQLDH--NPLILRRDQAGFTSRTDFS-RKLSHTHN-EIFNSKKII 62
R LL S P CL L + N F + S + L T ++ +
Sbjct: 235 RRLLKSKPYENCLLV--LLNVQNAKAWN----AF----NLSCKILLTTRFKQVTDF---- 280
Query: 63 SSAQKRGISPPNNRNKTNKKAEV-SASARYLHMSAHKVRRV------------------- 102
SA ++ + T EV S +YL + R
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 103 ---IDQIRGRSYEETLMILE-----LMP--YRACYP---IFKLIYSAAANGVH------- 142
D + + ++ I+E L P YR + +F H
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHIPTILLS 393
Query: 143 ----NMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMI---------KRPTCHITVV- 188
++ ++ +V+ ++++ + ++ ++ + I H ++V
Sbjct: 394 LIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 189 ---------LRDMSLD--DEY 198
D+ D+Y
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQY 472
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.064
Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 51/198 (25%)
Query: 17 TCLATRQLDHNPLILRRDQAGFTSRTD-------FSRKLSHTHNEIF-NSKKIIS----- 63
T + L P LR G T + + + + F + +K I+
Sbjct: 252 TA---KLLGFTPGELRSYLKGATGHSQGLVTAVAIA--ETDSWESFFVSVRKAITVLFFI 306
Query: 64 --SAQK---RGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
+ PP+ + + E S M + I + E+ +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPS----PMLS---------ISNLTQEQVQDYV 353
Query: 119 ELMPYRACYPIFKLIYSAAANGVHNM---GFNEASLVIAKAEVNEATSAKRPRPKAQGRV 175
+ P K + + NG N+ G + SL AK P Q R+
Sbjct: 354 NKT--NSHLPAGKQVEISLVNGAKNLVVSGPPQ-SLY---GLNLTLRKAKAPSGLDQSRI 407
Query: 176 HMIKR-PTCH-----ITV 187
+R +
Sbjct: 408 PFSERKLKFSNRFLPVAS 425
Score = 30.0 bits (67), Expect = 0.65
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 20/91 (21%)
Query: 89 ARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKL----IYSAAANGVHNM 144
++L + V + + +++ L + L + CY L I++ AA +
Sbjct: 62 GKFLGYVSSLV----EPSKVGQFDQVLNLC-LTEFENCY----LEGNDIHALAA---KLL 109
Query: 145 GFNEASLV----IAKAEVNEATSAKRPRPKA 171
N+ +LV + K + AKRP K
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKK 140
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 26.4 bits (58), Expect = 3.7
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 172 QGRVHMIKRPTCHITVVLRDMSLDDEY 198
+GR+ + + +++ + + +DD
Sbjct: 65 RGRLKVSHKVPGDVSLQINTLQMDDRN 91
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3,
X-RAY crystallography, metalloenzyme, calcium ION; HET:
GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1
b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A
1nuf_A 1nug_A 1rle_A*
Length = 692
Score = 26.9 bits (59), Expect = 6.0
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 21 TRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGIS---PPNNRN 77
T + LILRR Q F ++ L F ++ P +N +
Sbjct: 21 TDKFSSQELILRRGQN-FQVLMIMNKGLGSNERLEFIVSTGPYPSESAMTKAVFPLSNGS 79
Query: 78 KTNKKAEVSAS 88
A + AS
Sbjct: 80 SGGWSAVLQAS 90
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue
transglutaminase,acyltransferase; 2.50A {Pagrus major}
SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Length = 695
Score = 26.2 bits (57), Expect = 8.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 21 TRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIF 56
TR++D LI+RR Q F+ S L H+
Sbjct: 24 TREIDRERLIVRRGQP-FSITLQCSDSLPPKHHLEL 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.374
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,957,949
Number of extensions: 162919
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 22
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)