RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028931
         (201 letters)



>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score =  129 bits (326), Expect = 2e-39
 Identities = 40/118 (33%), Positives = 68/118 (57%)

Query: 74  NNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLI 133
             + +   +    A A+Y+ MS  KVR V+D IRG+S ++   +L  +P  A  P+ K++
Sbjct: 6   QRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVL 65

Query: 134 YSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
            SA AN +HN    E  L + +A V+   + KR  P+A+G  ++IK+ T HIT+++ +
Sbjct: 66  NSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAE 123


>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
           [TaxId: 562]}
          Length = 106

 Score =  127 bits (321), Expect = 5e-39
 Identities = 43/105 (40%), Positives = 57/105 (54%)

Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G 
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60

Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
           +   L + K  V+E  S KR  P+A+GR   I + T HITVV+ D
Sbjct: 61  DIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105


>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
           subsp. Thermus thermophilus [TaxId: 271]}
          Length = 110

 Score =  117 bits (294), Expect = 7e-35
 Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGRVHMIKRPTCHITVVLRD 191
               E  L +  A V+E  +     P+A+GR  +IK+ T HITV+L +
Sbjct: 62  HDALEDRLYVKAAYVDEGPAVL---PRARGRADIIKKRTSHITVILGE 106


>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 150

 Score = 99.6 bits (248), Expect = 1e-27
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 31/144 (21%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------ 119
           + +      A  R   MS    + +  +I+G++  E +  LE                  
Sbjct: 7   EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 66

Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
                         P +A      L+ +A  N   + GF+  ++ I     ++    +  
Sbjct: 67  GHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGR 125

Query: 168 RPKAQGRVHMIKRPTCHITVVLRD 191
           +P+A GR      P   + ++L +
Sbjct: 126 KPRAMGRASAWNSPQVDVELILEE 149


>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage
           looper(Trichoplusia ni), H chain [TaxId: 7111]}
          Length = 191

 Score = 26.5 bits (58), Expect = 2.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 6/49 (12%)

Query: 82  KAEVSASARYLHMSAHKVRRVID------QIRGRSYEETLMILELMPYR 124
           + EV AS +YL M AH  + V++           + EE    ++L+ Y 
Sbjct: 30  QMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYL 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 698,998
Number of extensions: 28775
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 7
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)