BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028932
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EEF|A Chain A, Solution Structure Of The Cbm_21 Domain From Human Protein
           Phosphatase 1, Regulatory (Inhibitor) Subunit 3b
          Length = 156

 Score = 30.0 bits (66), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 110 LVPFHQPTRNVTRLDAKILAQNVAISSSIAKDLKLEKTSGEIELAVRVKAKIRFRVGAWK 169
           ++ F QP+ +      ++ A +V + + + KD  +  T     LA     KIR     WK
Sbjct: 14  VLDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWK 73

Query: 170 S 170
           S
Sbjct: 74  S 74


>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
 pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
          Length = 748

 Score = 27.3 bits (59), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 112 PFHQPTRNVT--------RLDAKILAQNVAISSSIAKDLKLEKTSGEIELA 154
           PFHQ  +N T        +LD  IL ++ ++S  + KD    +   +++LA
Sbjct: 28  PFHQAAQNGTSNRDWWPNQLDLSILHRHSSLSDPMGKDFNYAQAFEKLDLA 78


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,810,153
Number of Sequences: 62578
Number of extensions: 157542
Number of successful extensions: 309
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 3
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)