BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028932
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 143 bits (361), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 123/192 (64%), Gaps = 4/192 (2%)
Query: 14 PAKRTGLVRCIAIVLLALIVLAGIVVLIIWLVVKPKRPVYTIEDGSVHDFNVNNN--HLN 71
P +R V CI + L+ L +L G+ +LI +L ++PKR +YT+E SV +F + NN H+N
Sbjct: 30 PGRRMNPVLCIIVALVLLGLLVGLAILITYLTLRPKRLIYTVEAASVQEFAIGNNDDHIN 89
Query: 72 STFGFVIRAHNPNGRASIYYDSIEVSVAYDDQNVAFSTLVPFHQPTRNVTRLDAKILAQN 131
+ F +VI+++NP S+ Y S+ +S A+ +Q+VA + PF Q +N TR++ ++++ N
Sbjct: 90 AKFSYVIKSYNPEKHVSVRYHSMRISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHN 149
Query: 132 VAISSSIAKDLKLEKTSGEIELAVRVKAKIRFRVGAWKSNHRTLRVVCDPVMLHFSSSK- 190
VA+S A+DL+ EK+ G IE+ V + A++ ++ ++S RTL+ VC PVM++ +SS
Sbjct: 150 VALSKFNARDLRAEKSKGTIEMEVYITARVSYKTWIFRSRRRTLKAVCTPVMINVTSSSL 209
Query: 191 -SFQRTYCDIDL 201
FQR C L
Sbjct: 210 DGFQRVLCKTRL 221
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 75/180 (41%), Gaps = 38/180 (21%)
Query: 22 RCIAIVLLALIVLAGIVVLIIWLVVKPKRPVYTIEDGSVHDFNVN-NNHLNSTFGFVIRA 80
R L+ I AG+ L +WL ++ +P +I++ + + N+ N+T F++R
Sbjct: 12 RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNFMVRC 71
Query: 81 HNPNGRASIYYDSIEVSVAYDDQNVAFSTLVPFHQPTRNVTRLD--AKILAQNVAISSSI 138
NPN IYYD + ++ FST+ N T+++ A +L N +
Sbjct: 72 DNPNKDKGIYYDDVHLN---------FSTI--------NTTKINSSALVLVGNYTVPKFY 114
Query: 139 AKDLKLEKTSGEIE------------------LAVRVKAKIRFRVGAWKSNHRTLRVVCD 180
K K G+++ + +K ++RF++ WK+ + V D
Sbjct: 115 QGHKKKAKKWGQVKPLNNQTVLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGAD 174
>sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=INO80 PE=3 SV=1
Length = 1904
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 91 YDSIEVSVAYDDQNVAFSTLVPFHQPTRNVTRLDAKILAQNVAISSSIAKDLKLEKTSGE 150
YD I +A D N F V + A L + ++S AK +L G
Sbjct: 806 YDQIWRDMARKDVNKTFKLAVDSYATK-------ASNLKKTAILASKEAKRWQLRTNKGT 858
Query: 151 IELAVRVKAKIRFRVGAWKSNHRTLR 176
+L R K +R +G WK N R R
Sbjct: 859 KDLQARAKRVMRDMMGFWKRNEREER 884
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 53 YTIEDGSVHDFNV-NNNHLNSTFGFVIRAHNPNGRASIYYDSIEVSVAYDDQNVAFSTLV 111
+ + D + F++ +NN+L + + N I+YD E +V Y +Q + +
Sbjct: 9 FQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMP 68
Query: 112 PFHQPTRNVTRLDAKILAQN-VAISSSIAKDLKLEKTSGEIELAVRVKAKIRFRV 165
F+ ++N L A Q V + + K + ++ +G + VK I FRV
Sbjct: 69 LFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYR--IDVKLSINFRV 121
>sp|Q872I5|INO80_NEUCR Putative DNA helicase ino-80 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ino-80 PE=3 SV=3
Length = 1997
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 91 YDSIEVSVAYDDQNVAFSTLV-PFHQPTRNVTRLDAKILAQNVAISSSIAKDLKLEKTSG 149
YD I +A D N F + + + N L + ++S AK +L G
Sbjct: 878 YDQIWRDLARKDVNKVFRLAIDSYSTKSSN--------LKKTAILASKEAKRWQLRTNKG 929
Query: 150 EIELAVRVKAKIRFRVGAWKSNHRTLR 176
+L R K +R +G WK N R R
Sbjct: 930 TKDLQARAKRVMRDMMGFWKRNEREER 956
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,311,485
Number of Sequences: 539616
Number of extensions: 2448610
Number of successful extensions: 6711
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6702
Number of HSP's gapped (non-prelim): 11
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)