Query 028932
Match_columns 201
No_of_seqs 119 out of 883
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.3E-37 2.8E-42 249.9 24.0 181 16-201 32-217 (219)
2 PF03168 LEA_2: Late embryogen 99.5 6.7E-14 1.5E-18 98.7 9.5 98 77-180 1-100 (101)
3 smart00769 WHy Water Stress an 98.7 2.5E-07 5.5E-12 65.4 10.7 62 68-130 11-73 (100)
4 PF07092 DUF1356: Protein of u 98.7 6.1E-06 1.3E-10 66.5 17.9 112 13-129 67-181 (238)
5 COG5608 LEA14-like dessication 97.7 0.0033 7.1E-08 47.3 14.1 110 49-169 31-142 (161)
6 PF12751 Vac7: Vacuolar segreg 97.1 0.0023 5E-08 55.1 7.9 38 68-106 344-381 (387)
7 PLN03160 uncharacterized prote 95.2 0.29 6.4E-06 39.4 10.2 102 13-121 32-146 (219)
8 PF14155 DUF4307: Domain of un 89.3 6.3 0.00014 28.2 9.4 29 99-130 71-101 (112)
9 COG4698 Uncharacterized protei 80.6 1.5 3.3E-05 34.1 2.5 43 16-60 6-48 (197)
10 PRK05529 cell division protein 80.4 2.7 5.8E-05 34.7 4.2 43 50-93 58-128 (255)
11 PRK07021 fliL flagellar basal 72.3 13 0.00029 28.3 5.8 18 88-105 77-94 (162)
12 COG2332 CcmE Cytochrome c-type 71.8 14 0.0003 28.0 5.5 31 80-110 78-109 (153)
13 COG1580 FliL Flagellar basal b 71.6 14 0.0003 28.3 5.7 26 21-46 17-42 (159)
14 PF11322 DUF3124: Protein of u 69.6 35 0.00076 25.0 7.1 57 66-125 17-75 (125)
15 PF14927 Neurensin: Neurensin 66.1 8.9 0.00019 28.7 3.5 26 27-53 49-74 (140)
16 PF11906 DUF3426: Protein of u 64.8 26 0.00057 25.9 6.0 74 54-128 49-135 (149)
17 PF04505 Dispanin: Interferon- 61.9 15 0.00033 24.7 3.8 40 3-42 1-40 (82)
18 PF14283 DUF4366: Domain of un 58.3 28 0.0006 28.1 5.3 23 31-53 168-190 (218)
19 PF13807 GNVR: G-rich domain o 56.8 16 0.00034 24.4 3.2 23 11-33 50-72 (82)
20 PF09865 DUF2092: Predicted pe 56.5 98 0.0021 24.8 8.2 40 66-106 33-74 (214)
21 COG5353 Uncharacterized protei 54.1 4.7 0.0001 30.4 0.2 31 19-49 4-34 (161)
22 PF11837 DUF3357: Domain of un 54.1 4.2 9.2E-05 28.9 0.0 20 22-41 29-48 (106)
23 PF11837 DUF3357: Domain of un 52.3 4.7 0.0001 28.6 0.0 24 15-38 25-48 (106)
24 PHA02844 putative transmembran 50.5 12 0.00027 24.7 1.8 10 35-44 60-69 (75)
25 PF09911 DUF2140: Uncharacteri 49.7 30 0.00065 27.1 4.2 30 20-51 2-31 (187)
26 CHL00020 psbN photosystem II p 49.1 23 0.00051 20.8 2.6 23 26-48 7-29 (43)
27 PF09624 DUF2393: Protein of u 48.9 1.1E+02 0.0023 22.7 7.7 52 49-108 46-97 (149)
28 PRK13183 psbN photosystem II r 48.3 27 0.00058 20.9 2.8 23 26-48 10-32 (46)
29 PF06919 Phage_T4_Gp30_7: Phag 44.2 51 0.0011 23.4 4.1 34 82-116 40-74 (121)
30 PF10907 DUF2749: Protein of u 43.8 41 0.00088 21.7 3.3 16 34-49 13-28 (66)
31 PRK13150 cytochrome c-type bio 43.6 74 0.0016 24.4 5.3 64 74-144 78-145 (159)
32 PF07705 CARDB: CARDB; InterP 43.1 97 0.0021 20.5 5.7 54 70-128 17-70 (101)
33 PF14874 PapD-like: Flagellar- 42.6 1.1E+02 0.0023 20.8 6.8 56 69-128 17-72 (102)
34 PF04790 Sarcoglycan_1: Sarcog 41.4 2.1E+02 0.0045 23.8 9.1 17 70-86 84-100 (264)
35 PF02468 PsbN: Photosystem II 39.8 20 0.00043 21.2 1.3 22 27-48 8-29 (43)
36 PF02480 Herpes_gE: Alphaherpe 39.5 9.8 0.00021 34.0 0.0 23 26-48 356-378 (439)
37 COG3121 FimC P pilus assembly 39.0 58 0.0013 26.4 4.4 36 77-115 166-203 (235)
38 PF09307 MHC2-interact: CLIP, 38.4 10 0.00023 27.3 0.0 33 14-47 25-57 (114)
39 PF15012 DUF4519: Domain of un 38.1 35 0.00076 21.3 2.3 13 37-49 44-56 (56)
40 PRK06531 yajC preprotein trans 38.1 9.9 0.00022 27.4 -0.2 10 42-51 16-25 (113)
41 PF00927 Transglut_C: Transglu 37.8 1.3E+02 0.0029 20.6 7.7 59 69-128 12-75 (107)
42 PF05170 AsmA: AsmA family; I 37.5 2.1E+02 0.0047 26.2 8.5 65 89-159 468-533 (604)
43 PRK13254 cytochrome c-type bio 37.3 1.8E+02 0.0038 22.0 6.5 12 133-144 127-138 (148)
44 PF06024 DUF912: Nucleopolyhed 36.9 44 0.00095 23.4 3.0 11 37-47 77-88 (101)
45 PF10177 DUF2371: Uncharacteri 36.5 61 0.0013 24.3 3.8 23 20-42 37-59 (141)
46 PHA02650 hypothetical protein; 35.8 15 0.00033 24.6 0.4 10 35-44 61-70 (81)
47 TIGR02588 conserved hypothetic 35.0 1.8E+02 0.0039 21.3 10.5 45 36-86 17-63 (122)
48 KOG3927 Na+/K+ ATPase, beta su 34.5 27 0.00058 29.6 1.9 47 18-65 42-91 (300)
49 PRK13165 cytochrome c-type bio 33.4 1.9E+02 0.0041 22.2 6.1 20 84-103 88-107 (160)
50 KOG3950 Gamma/delta sarcoglyca 32.5 64 0.0014 26.6 3.6 23 69-91 105-127 (292)
51 PRK14772 lipoprotein signal pe 31.2 95 0.0021 24.5 4.3 11 79-89 67-77 (190)
52 PF08999 SP_C-Propep: Surfacta 30.9 40 0.00087 22.7 1.9 12 1-12 10-21 (93)
53 PLN03094 Substrate binding sub 30.7 93 0.002 27.2 4.6 14 96-109 134-147 (370)
54 PF06796 NapE: Periplasmic nit 30.1 66 0.0014 20.1 2.6 16 13-28 11-26 (56)
55 PF11797 DUF3324: Protein of u 29.8 2.3E+02 0.0049 20.8 9.4 89 49-159 26-116 (140)
56 PF04478 Mid2: Mid2 like cell 29.4 40 0.00086 25.6 1.8 19 35-53 64-82 (154)
57 PF06092 DUF943: Enterobacteri 29.4 25 0.00055 26.8 0.8 13 36-48 16-28 (157)
58 PRK11486 flagellar biosynthesi 29.1 25 0.00054 25.8 0.7 16 30-45 24-39 (124)
59 PF14812 PBP1_TM: Transmembran 28.9 2.9 6.3E-05 28.2 -3.9 11 14-24 61-71 (81)
60 PF09604 Potass_KdpF: F subuni 27.6 10 0.00023 19.6 -1.1 15 35-49 9-23 (25)
61 PRK00159 putative septation in 26.7 70 0.0015 21.9 2.5 19 33-51 41-59 (87)
62 PF07423 DUF1510: Protein of u 26.7 37 0.00081 27.4 1.4 11 14-24 6-16 (217)
63 PRK08455 fliL flagellar basal 25.9 1.9E+02 0.0041 22.5 5.2 27 75-104 91-117 (182)
64 PHA03283 envelope glycoprotein 25.6 75 0.0016 29.0 3.2 12 36-47 413-424 (542)
65 PRK00753 psbL photosystem II r 25.1 1.1E+02 0.0024 17.4 2.7 18 1-18 1-18 (39)
66 COG1589 FtsQ Cell division sep 25.0 50 0.0011 27.3 1.9 28 35-62 42-69 (269)
67 PRK10893 lipopolysaccharide ex 24.7 3.4E+02 0.0075 21.2 10.1 20 47-66 37-56 (192)
68 PF13800 Sigma_reg_N: Sigma fa 24.5 18 0.00038 24.9 -0.8 24 13-36 6-29 (96)
69 PRK02251 putative septation in 24.5 77 0.0017 21.7 2.4 19 33-51 42-60 (87)
70 PF11395 DUF2873: Protein of u 24.1 16 0.00034 20.8 -0.8 8 39-46 25-32 (43)
71 PF12505 DUF3712: Protein of u 23.6 2.8E+02 0.006 19.8 8.7 64 104-173 2-67 (125)
72 PF14654 Epiglycanin_C: Mucin, 23.6 61 0.0013 22.7 1.8 34 12-45 9-42 (106)
73 PF04415 DUF515: Protein of un 22.7 46 0.00099 29.5 1.3 7 42-48 52-58 (416)
74 PRK13159 cytochrome c-type bio 22.6 3.5E+02 0.0077 20.6 6.4 53 84-144 82-138 (155)
75 cd01324 cbb3_Oxidase_CcoQ Cyto 22.6 24 0.00052 21.3 -0.4 8 43-50 28-35 (48)
76 PF10814 DUF2562: Protein of u 22.4 47 0.001 24.3 1.1 29 22-52 91-119 (133)
77 TIGR02745 ccoG_rdxA_fixG cytoc 21.8 5.9E+02 0.013 22.8 10.6 19 112-130 382-400 (434)
78 TIGR02115 potass_kdpF K+-trans 21.2 7.5 0.00016 20.4 -2.4 15 35-49 8-22 (26)
79 PF11770 GAPT: GRB2-binding ad 21.0 1.5E+02 0.0032 22.5 3.5 12 79-90 66-77 (158)
80 PF07790 DUF1628: Protein of u 20.9 2.5E+02 0.0054 18.2 6.5 23 78-101 56-78 (80)
81 PF05399 EVI2A: Ectropic viral 20.8 78 0.0017 25.5 2.1 17 24-40 132-148 (227)
82 COG3296 Uncharacterized protei 20.8 34 0.00073 25.3 0.0 58 1-58 1-60 (143)
83 PF03100 CcmE: CcmE; InterPro 20.7 1.5E+02 0.0032 21.6 3.5 8 95-102 83-90 (131)
84 PF06637 PV-1: PV-1 protein (P 20.1 90 0.002 27.4 2.5 17 27-43 33-49 (442)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=249.85 Aligned_cols=181 Identities=19% Similarity=0.316 Sum_probs=153.6
Q ss_pred CCCcchhhHHHHHHHHHHHHHHheeeeEEEEeCCCCEEEEeeeEEeeeecCC-----CceeEEEEEEEEEeCCCCeeeEE
Q 028932 16 KRTGLVRCIAIVLLALIVLAGIVVLIIWLVVKPKRPVYTIEDGSVHDFNVNN-----NHLNSTFGFVIRAHNPNGRASIY 90 (201)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P~~~v~~~~v~~~~~~~-----~~l~~~~~~~l~v~NPN~~~~i~ 90 (201)
||+++.+|+++++.+++++++++++++|++||||+|+|+|+++++++|++++ ..+|++++++++++|||. .+++
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~ 110 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK 110 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence 4445555555555555566777778889999999999999999999999853 357888889999999996 9999
Q ss_pred EeceEEEEEECCeEEeeeeeeceeecCCceeEEEEEEEEeeeecChHHHHHHHhhhccceEEEEEEEEEEEEEEEeeEEe
Q 028932 91 YDSIEVSVAYDDQNVAFSTLVPFHQPTRNVTRLDAKILAQNVAISSSIAKDLKLEKTSGEIELAVRVKAKIRFRVGAWKS 170 (201)
Q Consensus 91 y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~~~~~~l~~~~~~~l~~d~~~g~v~~~v~v~~~v~~kvg~~~~ 170 (201)
|++++++++|+|+.+|++.+|+|+|++++|+.+++++...+..+.++ .+|.+|..+|.++|+++++++++.++|.+.+
T Consensus 111 Y~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~k 188 (219)
T PLN03160 111 YSNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSGLLNMNSYTRIGGKVKILKIIK 188 (219)
T ss_pred EcCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCCeEEEEEEEEEEEEEEEEEEEE
Confidence 99999999999999999999999999999999999977665544332 5799999999999999999998889998888
Q ss_pred cceeEEEEcCeEEEccCCCCceeccceeeeC
Q 028932 171 NHRTLRVVCDPVMLHFSSSKSFQRTYCDIDL 201 (201)
Q Consensus 171 ~~~~~~v~C~~v~v~~~~~~~~~~~~C~v~~ 201 (201)
+++.++++|+ +.+++++. .+++++|+.++
T Consensus 189 ~~v~~~v~C~-v~V~~~~~-~i~~~~C~~~~ 217 (219)
T PLN03160 189 KHVVVKMNCT-MTVNITSQ-AIQGQKCKRHV 217 (219)
T ss_pred EEEEEEEEeE-EEEECCCC-EEeccEecccc
Confidence 9999999999 99999876 77899999763
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.53 E-value=6.7e-14 Score=98.66 Aligned_cols=98 Identities=29% Similarity=0.429 Sum_probs=73.8
Q ss_pred EEEEeCCCCeeeEEEeceEEEEEECCeEEe-eeeeeceeecCCceeEEEEEEEEeeeecChHHHHHHHhhhccceEEEEE
Q 028932 77 VIRAHNPNGRASIYYDSIEVSVAYDDQNVA-FSTLVPFHQPTRNVTRLDAKILAQNVAISSSIAKDLKLEKTSGEIELAV 155 (201)
Q Consensus 77 ~l~v~NPN~~~~i~y~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~t~~v~~~l~~~~~~l~~~~~~~l~~d~~~g~v~~~v 155 (201)
+|+++|||. ++++|++++++++|+|+.+| ....++|.|++++++.+.+.+..+...+ ...+.++. +|..++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceEE
Confidence 589999997 99999999999999999999 6789999999999999999888776544 34556666 66677777
Q ss_pred EEEEEEEEEE-eeEEecceeEEEEcC
Q 028932 156 RVKAKIRFRV-GAWKSNHRTLRVVCD 180 (201)
Q Consensus 156 ~v~~~v~~kv-g~~~~~~~~~~v~C~ 180 (201)
.+++++++++ +.....+..+.++|+
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 7788888884 333234455555554
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.72 E-value=2.5e-07 Score=65.44 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=56.4
Q ss_pred CceeEEEEEEEEEeCCCCeeeEEEeceEEEEEECCeEEeeeeee-ceeecCCceeEEEEEEEEe
Q 028932 68 NHLNSTFGFVIRAHNPNGRASIYYDSIEVSVAYDDQNVAFSTLV-PFHQPTRNVTRLDAKILAQ 130 (201)
Q Consensus 68 ~~l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~v~~~l~~~ 130 (201)
+..+.++.+.+.+.|||. +.+.|++++.+++|+|..+|++..+ ++..++++++.+.+.+...
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~ 73 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN 73 (100)
T ss_pred cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee
Confidence 347899999999999995 9999999999999999999999885 7999999999999888773
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=98.65 E-value=6.1e-06 Score=66.55 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=74.1
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHheeeeEEEEeCCCCEEEEeeeEEeeeec--CCCceeEEEEEEEEEeCCCCeeeEE
Q 028932 13 APAKRTGLVRCIAIVLLALIVLAGIVVLIIWLVVKPKRPVYTIEDGSVHDFNV--NNNHLNSTFGFVIRAHNPNGRASIY 90 (201)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P~~~v~~~~v~~~~~--~~~~l~~~~~~~l~v~NPN~~~~i~ 90 (201)
+|-|+++-..+.++++++-+++.|+++++ +-||...++-.++......+ .++.+..++.-++.++||| ++.+.
T Consensus 67 qRLKPrRTklyV~~sV~~CLl~~~L~iFF----LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~N-Fy~V~ 141 (238)
T PF07092_consen 67 QRLKPRRTKLYVFLSVLLCLLLSGLVIFF----LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPN-FYPVT 141 (238)
T ss_pred cccCCceeEEEeeHHHHHHHHHHHheEEE----EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCC-EEEEE
Confidence 56666553444433433333444444322 33876666655544443333 4567889999999999999 89999
Q ss_pred EeceEEEEEECCeEEeeeeeec-eeecCCceeEEEEEEEE
Q 028932 91 YDSIEVSVAYDDQNVAFSTLVP-FHQPTRNVTRLDAKILA 129 (201)
Q Consensus 91 y~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~t~~v~~~l~~ 129 (201)
..++++++.|....+|.+.... -..++++.+.+..++..
T Consensus 142 Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 142 VTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred EEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE
Confidence 9999999999999999886543 35677776666655443
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.72 E-value=0.0033 Score=47.32 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=77.2
Q ss_pred CCCEEEEeeeEEeeeecCCCceeEEEEEEEEEeCCCCeeeEEEeceEEEEEECCeEEeeee-eeceeecCCceeEEEEEE
Q 028932 49 KRPVYTIEDGSVHDFNVNNNHLNSTFGFVIRAHNPNGRASIYYDSIEVSVAYDDQNVAFST-LVPFHQPTRNVTRLDAKI 127 (201)
Q Consensus 49 ~~P~~~v~~~~v~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~~lg~~~-vp~f~q~~~~t~~v~~~l 127 (201)
++|.+.--.+..-..+- ....+-.++.++|||. +.+-..+++.++|-+|.++|.+. ..++..++++..++++.+
T Consensus 31 ~~p~ve~~ka~wGkvt~----s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l 105 (161)
T COG5608 31 KKPGVESMKAKWGKVTN----SETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPL 105 (161)
T ss_pred CCCCceEEEEEEEEEec----cceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEE
Confidence 45766655555555432 4568888999999995 99999999999999999999985 467999999999999998
Q ss_pred EEeeeecChHHHHHHHhhhccceE-EEEEEEEEEEEEEEeeEE
Q 028932 128 LAQNVAISSSIAKDLKLEKTSGEI-ELAVRVKAKIRFRVGAWK 169 (201)
Q Consensus 128 ~~~~~~l~~~~~~~l~~d~~~g~v-~~~v~v~~~v~~kvg~~~ 169 (201)
..+...+.+. +.....+|.- .++++++ ..+++|...
T Consensus 106 ~~d~~~~ke~----w~~hi~ngErs~Ir~~i~--~~v~vg~~d 142 (161)
T COG5608 106 RLDNSKIKEW----WVTHIENGERSTIRVRIK--GVVKVGGMD 142 (161)
T ss_pred EEehHHHHHH----HHHHhhccCcccEEEEEE--EEEEEccEE
Confidence 8876554443 3333344432 3443333 344555443
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.12 E-value=0.0023 Score=55.06 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=30.8
Q ss_pred CceeEEEEEEEEEeCCCCeeeEEEeceEEEEEECCeEEe
Q 028932 68 NHLNSTFGFVIRAHNPNGRASIYYDSIEVSVAYDDQNVA 106 (201)
Q Consensus 68 ~~l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~~lg 106 (201)
+.-..-|++++.+.||| .+.+..++.+++|+-+..-+|
T Consensus 344 S~qELmfdl~V~A~NPn-~~~V~I~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 344 SEQELMFDLTVEAFNPN-WFTVTIDDMDLDIFAKSRYVG 381 (387)
T ss_pred ccceEEEeeEEEEECCC-eEEEEeccceeeeEecCCccC
Confidence 34567899999999999 599999999999986554433
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.22 E-value=0.29 Score=39.43 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=60.1
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHheeeeEEEEeCC--CCEEEEeeeEEee-------eecC---C-CceeEEEEEEEE
Q 028932 13 APAKRTGLVRCIAIVLLALIVLAGIVVLIIWLVVKPK--RPVYTIEDGSVHD-------FNVN---N-NHLNSTFGFVIR 79 (201)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~l~~i~~~i~~lv~rP~--~P~~~v~~~~v~~-------~~~~---~-~~l~~~~~~~l~ 79 (201)
+|++..+|++|++++++++++++++++++++=-=.|+ --.++++++.+.. +|++ + ..-|.|. +.+.
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~ 110 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK 110 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence 6999999999999988888888888888776556664 3456666655431 2221 0 1123344 3444
Q ss_pred EeCCCCeeeEEEeceEEEEEECCeEEeeeeeeceeecCCcee
Q 028932 80 AHNPNGRASIYYDSIEVSVAYDDQNVAFSTLVPFHQPTRNVT 121 (201)
Q Consensus 80 v~NPN~~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~ 121 (201)
..| ....++|++..+.- ..+..+..+++.+...+.+
T Consensus 111 Y~~--~~~~v~Y~g~~vG~----a~~p~g~~~ar~T~~l~~t 146 (219)
T PLN03160 111 YSN--TTTTIYYGGTVVGE----ARTPPGKAKARRTMRMNVT 146 (219)
T ss_pred EcC--eEEEEEECCEEEEE----EEcCCcccCCCCeEEEEEE
Confidence 443 35889998755433 2334444444444444433
No 8
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=89.32 E-value=6.3 Score=28.25 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=16.4
Q ss_pred EECCeEEeee--eeeceeecCCceeEEEEEEEEe
Q 028932 99 AYDDQNVAFS--TLVPFHQPTRNVTRLDAKILAQ 130 (201)
Q Consensus 99 ~Y~g~~lg~~--~vp~f~q~~~~t~~v~~~l~~~ 130 (201)
-|++.++|.- .+|+ ++..+..+.+.+...
T Consensus 71 ~~d~aeVGrreV~vp~---~~~~~~~~~v~v~Tt 101 (112)
T PF14155_consen 71 DYDGAEVGRREVLVPP---SGERTVRVTVTVRTT 101 (112)
T ss_pred eCCCCEEEEEEEEECC---CCCcEEEEEEEEEec
Confidence 4678888865 4555 333445555555443
No 9
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.63 E-value=1.5 Score=34.09 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=27.8
Q ss_pred CCCcchhhHHHHHHHHHHHHHHheeeeEEEEeCCCCEEEEeeeEE
Q 028932 16 KRTGLVRCIAIVLLALIVLAGIVVLIIWLVVKPKRPVYTIEDGSV 60 (201)
Q Consensus 16 ~~~~~~~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P~~~v~~~~v 60 (201)
...++++|+|.+++.+.++++ +++..+++.|+.|...+.+.+-
T Consensus 6 ~~~n~WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 6 GTLNYWKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred ccccHHHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 334577787777766655544 4455567899997766666543
No 10
>PRK05529 cell division protein FtsQ; Provisional
Probab=80.44 E-value=2.7 Score=34.68 Aligned_cols=43 Identities=7% Similarity=0.088 Sum_probs=28.5
Q ss_pred CCEEEEeeeEEeeeec-C-------------CC--------------ceeEEEEEEEEEeCCCCeeeEEEec
Q 028932 50 RPVYTIEDGSVHDFNV-N-------------NN--------------HLNSTFGFVIRAHNPNGRASIYYDS 93 (201)
Q Consensus 50 ~P~~~v~~~~v~~~~~-~-------------~~--------------~l~~~~~~~l~v~NPN~~~~i~y~~ 93 (201)
.|.|.|..+.+++-+. + .+ .+-.-=+++++-+.||. +.++..+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 4899999999987443 1 01 12234466778889994 8888753
No 11
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=72.31 E-value=13 Score=28.26 Aligned_cols=18 Identities=6% Similarity=0.015 Sum_probs=12.2
Q ss_pred eEEEeceEEEEEECCeEE
Q 028932 88 SIYYDSIEVSVAYDDQNV 105 (201)
Q Consensus 88 ~i~y~~~~~~v~Y~g~~l 105 (201)
+-+|=.+++.+.+.+...
T Consensus 77 ~~rylkv~i~L~~~~~~~ 94 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEAT 94 (162)
T ss_pred CceEEEEEEEEEECCHHH
Confidence 457777777877776543
No 12
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=71.76 E-value=14 Score=28.01 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=20.4
Q ss_pred EeCCCCeeeEEEeceEEEEEECCeEE-eeeee
Q 028932 80 AHNPNGRASIYYDSIEVSVAYDDQNV-AFSTL 110 (201)
Q Consensus 80 v~NPN~~~~i~y~~~~~~v~Y~g~~l-g~~~v 110 (201)
+.--|..+.+.|+.+-=+++-+|+.+ +.+.+
T Consensus 78 vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 78 VTDGNKSVTVSYEGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred EecCCceEEEEEeccCchhhhcCCeEEEEEEe
Confidence 33555568888888777777777654 44443
No 13
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=71.59 E-value=14 Score=28.32 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHheeeeEEEE
Q 028932 21 VRCIAIVLLALIVLAGIVVLIIWLVV 46 (201)
Q Consensus 21 ~~~~~~~~~~l~~l~~i~~~i~~lv~ 46 (201)
..+++++++++++++++.+..+|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 34554455555555666666777664
No 14
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=69.63 E-value=35 Score=25.03 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCCceeEEEEEEEEEeCCCCeeeEEEeceEEEEEEC--CeEEeeeeeeceeecCCceeEEEE
Q 028932 66 NNNHLNSTFGFVIRAHNPNGRASIYYDSIEVSVAYD--DQNVAFSTLVPFHQPTRNVTRLDA 125 (201)
Q Consensus 66 ~~~~l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~Y~--g~~lg~~~vp~f~q~~~~t~~v~~ 125 (201)
.+.....+++.+|++||.+..-.++..+.+ ||+ |..+-..--.|...++-.+.++-+
T Consensus 17 ~~~~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 17 GNKHRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVV 75 (125)
T ss_pred cCCCceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEE
Confidence 345677899999999999988777766532 553 555555444566777776665543
No 15
>PF14927 Neurensin: Neurensin
Probab=66.06 E-value=8.9 Score=28.73 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHheeeeEEEEeCCCCEE
Q 028932 27 VLLALIVLAGIVVLIIWLVVKPKRPVY 53 (201)
Q Consensus 27 ~~~~l~~l~~i~~~i~~lv~rP~~P~~ 53 (201)
++-++++++|++++++-. .-|++++.
T Consensus 49 i~g~l~Ll~Gi~~l~vgY-~vP~~~e~ 74 (140)
T PF14927_consen 49 ISGLLLLLLGIVALTVGY-LVPPKIEV 74 (140)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCccee
Confidence 333445556766654432 24644443
No 16
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=64.81 E-value=26 Score=25.89 Aligned_cols=74 Identities=9% Similarity=0.035 Sum_probs=46.9
Q ss_pred EEeeeEEeeeecCC-CceeEEEEEEEEEeCCCCeeeEEEeceEEEEE-ECCeEEeeeee-e----------ceeecCCce
Q 028932 54 TIEDGSVHDFNVNN-NHLNSTFGFVIRAHNPNGRASIYYDSIEVSVA-YDDQNVAFSTL-V----------PFHQPTRNV 120 (201)
Q Consensus 54 ~v~~~~v~~~~~~~-~~l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~-Y~g~~lg~~~v-p----------~f~q~~~~t 120 (201)
.++.+++++.++.. ..-+-.+.++..++|... ....|-.++++++ -+|+.+++-.+ | ....+++.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~ 127 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGES 127 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCe
Confidence 34444444433321 234567788889999994 8999999999998 57888887655 3 123445555
Q ss_pred eEEEEEEE
Q 028932 121 TRLDAKIL 128 (201)
Q Consensus 121 ~~v~~~l~ 128 (201)
..+...+.
T Consensus 128 ~~~~~~~~ 135 (149)
T PF11906_consen 128 VPFRLRLE 135 (149)
T ss_pred EEEEEEee
Confidence 55555443
No 17
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=61.89 E-value=15 Score=24.70 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=16.8
Q ss_pred CCCCccccCCCCCCCCcchhhHHHHHHHHHHHHHHheeee
Q 028932 3 SNPTATQLTAAPAKRTGLVRCIAIVLLALIVLAGIVVLII 42 (201)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~~i~ 42 (201)
||+.+.+.+..+...+..+.+-+..+++-..=+|+++++.
T Consensus 1 ~~~~~~~~~~~~~~p~~yl~~sI~s~l~Cc~PlGi~Ai~~ 40 (82)
T PF04505_consen 1 PPSTVVPPPPPPPPPPDYLVLSIFSTLCCCWPLGIVAIVY 40 (82)
T ss_pred CCCcccCCCCCCCCCCCceeHHHHHHHHHHhhHHHHHhee
Confidence 4444444444434445555543322221111256665443
No 18
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=58.35 E-value=28 Score=28.12 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=12.1
Q ss_pred HHHHHHHheeeeEEEEeCCCCEE
Q 028932 31 LIVLAGIVVLIIWLVVKPKRPVY 53 (201)
Q Consensus 31 l~~l~~i~~~i~~lv~rP~~P~~ 53 (201)
+++++|..++.++-++||+...-
T Consensus 168 lv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 168 LVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHhhcceEEEEEEeccccccc
Confidence 33344444444334788876543
No 19
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=56.78 E-value=16 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=11.5
Q ss_pred CCCCCCCCcchhhHHHHHHHHHH
Q 028932 11 TAAPAKRTGLVRCIAIVLLALIV 33 (201)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~l~~ 33 (201)
|.+|.++++.+-+++++++++++
T Consensus 50 P~~P~~P~~~lil~l~~~~Gl~l 72 (82)
T PF13807_consen 50 PDKPVSPKRALILALGLFLGLIL 72 (82)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHH
Confidence 34455555555555544444443
No 20
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=56.55 E-value=98 Score=24.84 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCCceeEEEEEEEEEeCCCCeeeEEEe--ceEEEEEECCeEEe
Q 028932 66 NNNHLNSTFGFVIRAHNPNGRASIYYD--SIEVSVAYDDQNVA 106 (201)
Q Consensus 66 ~~~~l~~~~~~~l~v~NPN~~~~i~y~--~~~~~v~Y~g~~lg 106 (201)
++..+...-+.++.++=|| ++.+.+. ..+..++|+|..+.
T Consensus 33 ~gqklq~~~~~~v~v~RPd-klr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 33 DGQKLQFSSSGTVTVQRPD-KLRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CCceEEEEEEEEEEEeCCC-eEEEEEEcCCcceEEEECCCEEE
Confidence 4456788889999999999 5999994 56788999998664
No 21
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.12 E-value=4.7 Score=30.43 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=21.2
Q ss_pred cchhhHHHHHHHHHHHHHHheeeeEEEEeCC
Q 028932 19 GLVRCIAIVLLALIVLAGIVVLIIWLVVKPK 49 (201)
Q Consensus 19 ~~~~~~~~~~~~l~~l~~i~~~i~~lv~rP~ 49 (201)
+++.++..++++++++++.+++.+|....|.
T Consensus 4 k~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 4 KHLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eEeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 5566665555556666677778888888873
No 22
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=54.08 E-value=4.2 Score=28.87 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHheee
Q 028932 22 RCIAIVLLALIVLAGIVVLI 41 (201)
Q Consensus 22 ~~~~~~~~~l~~l~~i~~~i 41 (201)
+|+.+++..+++++.+++++
T Consensus 29 k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 29 KCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 23
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=52.28 E-value=4.7 Score=28.64 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHh
Q 028932 15 AKRTGLVRCIAIVLLALIVLAGIV 38 (201)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~l~~i~ 38 (201)
+|+.+++-.+++.+++++++++++
T Consensus 25 rR~~k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 25 RRPLKCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp ------------------------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHH
Confidence 333356666666555566666666
No 24
>PHA02844 putative transmembrane protein; Provisional
Probab=50.52 E-value=12 Score=24.66 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=4.6
Q ss_pred HHHheeeeEE
Q 028932 35 AGIVVLIIWL 44 (201)
Q Consensus 35 ~~i~~~i~~l 44 (201)
+.++..++|+
T Consensus 60 ~~~~~~flYL 69 (75)
T PHA02844 60 FATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHH
Confidence 3344445555
No 25
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=49.69 E-value=30 Score=27.12 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=18.5
Q ss_pred chhhHHHHHHHHHHHHHHheeeeEEEEeCCCC
Q 028932 20 LVRCIAIVLLALIVLAGIVVLIIWLVVKPKRP 51 (201)
Q Consensus 20 ~~~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P 51 (201)
+++|.+++++++++ ++++++++.+++|+.|
T Consensus 2 ~WK~aF~~Lla~~l--~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 2 WWKWAFLILLALNL--AFVIVVFFRLFQPSEP 31 (187)
T ss_pred hHHHHHHHHHHHHH--HHHhheeeEEEccCCC
Confidence 46676666654433 3444556678888866
No 26
>CHL00020 psbN photosystem II protein N
Probab=49.07 E-value=23 Score=20.84 Aligned_cols=23 Identities=4% Similarity=0.122 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHheeeeEEEEeC
Q 028932 26 IVLLALIVLAGIVVLIIWLVVKP 48 (201)
Q Consensus 26 ~~~~~l~~l~~i~~~i~~lv~rP 48 (201)
.++++..+++++....+|..|-|
T Consensus 7 ~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 7 VAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHHHhhheeeeeccCC
Confidence 34556667788888899999887
No 27
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=48.85 E-value=1.1e+02 Score=22.66 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=36.0
Q ss_pred CCCEEEEeeeEEeeeecCCCceeEEEEEEEEEeCCCCeeeEEEeceEEEEEECCeEEeee
Q 028932 49 KRPVYTIEDGSVHDFNVNNNHLNSTFGFVIRAHNPNGRASIYYDSIEVSVAYDDQNVAFS 108 (201)
Q Consensus 49 ~~P~~~v~~~~v~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~~lg~~ 108 (201)
++++.++.+.+- ++ .+-.+.+..+++|-. +..+..=.+++++..++...+..
T Consensus 46 ~~~~~~~~~~~~--l~-----~~~~~~v~g~V~N~g-~~~i~~c~i~~~l~~~~~~~~n~ 97 (149)
T PF09624_consen 46 KKIELTLTSQKR--LQ-----YSESFYVDGTVTNTG-KFTIKKCKITVKLYNDKQVSGNK 97 (149)
T ss_pred CCceEEEeeeee--ee-----eccEEEEEEEEEECC-CCEeeEEEEEEEEEeCCCccCch
Confidence 346666665543 22 356677789999999 48888888899998876655543
No 28
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=48.30 E-value=27 Score=20.90 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHheeeeEEEEeC
Q 028932 26 IVLLALIVLAGIVVLIIWLVVKP 48 (201)
Q Consensus 26 ~~~~~l~~l~~i~~~i~~lv~rP 48 (201)
.++++..+++++....+|..|-|
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCC
Confidence 34556667788888899999887
No 29
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=44.25 E-value=51 Score=23.41 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=25.8
Q ss_pred CCCCeeeEEEe-ceEEEEEECCeEEeeeeeeceeec
Q 028932 82 NPNGRASIYYD-SIEVSVAYDDQNVAFSTLVPFHQP 116 (201)
Q Consensus 82 NPN~~~~i~y~-~~~~~v~Y~g~~lg~~~vp~f~q~ 116 (201)
||| ++-+.|+ .+++++-|.|..+.-+.-..|.++
T Consensus 40 ~pN-Yvf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~R 74 (121)
T PF06919_consen 40 TPN-YVFMRFENGITVSVTYNGSIFKIGLDDDHRER 74 (121)
T ss_pred CCC-EEEEEecCCCEEEEEecCcEEEEEecCchhhc
Confidence 999 7999998 689999999976655544444443
No 30
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=43.76 E-value=41 Score=21.68 Aligned_cols=16 Identities=25% Similarity=0.675 Sum_probs=11.9
Q ss_pred HHHHheeeeEEEEeCC
Q 028932 34 LAGIVVLIIWLVVKPK 49 (201)
Q Consensus 34 l~~i~~~i~~lv~rP~ 49 (201)
+.+....+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3445667889999998
No 31
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=43.62 E-value=74 Score=24.36 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=30.2
Q ss_pred EEEEEEEeCCCCeeeEEEeceEEEEEECCeE-EeeeeeeceeecCCceeEEEEE-EE--EeeeecChHHHHHHHh
Q 028932 74 FGFVIRAHNPNGRASIYYDSIEVSVAYDDQN-VAFSTLVPFHQPTRNVTRLDAK-IL--AQNVAISSSIAKDLKL 144 (201)
Q Consensus 74 ~~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~~-lg~~~vp~f~q~~~~t~~v~~~-l~--~~~~~l~~~~~~~l~~ 144 (201)
+.+.+.+...+..+.+.|+.+-=+++-+|+. +..+.+ ++. + .+.++ +- =++.-.++++++.|++
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~gVVveG~~----~~~-g--~F~A~evLAKhdekYmPpEv~~al~~ 145 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREGQGVVVQGTL----EKG-N--HVLAHEVLAKHDENYTPPEVEKAMQE 145 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCCCeEEEEEEE----CCC-C--EEEEeEEEeCCCCCCCCHHHHHHHHH
Confidence 3344444444545666666555555555543 334443 211 1 23222 22 2344556777777764
No 32
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=43.05 E-value=97 Score=20.47 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=32.4
Q ss_pred eeEEEEEEEEEeCCCCeeeEEEeceEEEEEECCeEEeeeeeeceeecCCceeEEEEEEE
Q 028932 70 LNSTFGFVIRAHNPNGRASIYYDSIEVSVAYDDQNVAFSTLVPFHQPTRNVTRLDAKIL 128 (201)
Q Consensus 70 l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~ 128 (201)
..-.+.+++.++|... .. -++..+.++..|..++...++.+ .++.+..+...+.
T Consensus 17 ~g~~~~i~~~V~N~G~-~~--~~~~~v~~~~~~~~~~~~~i~~L--~~g~~~~v~~~~~ 70 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGT-AD--AENVTVRLYLDGNSVSTVTIPSL--APGESETVTFTWT 70 (101)
T ss_dssp TTSEEEEEEEEEE-SS-S---BEEEEEEEEETTEEEEEEEESEB---TTEEEEEEEEEE
T ss_pred CCCEEEEEEEEEECCC-CC--CCCEEEEEEECCceeccEEECCc--CCCcEEEEEEEEE
Confidence 3456777888999764 22 44667888888888876666443 3444554544443
No 33
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=42.63 E-value=1.1e+02 Score=20.77 Aligned_cols=56 Identities=5% Similarity=-0.004 Sum_probs=33.3
Q ss_pred ceeEEEEEEEEEeCCCCeeeEEEeceEEEEEECCeEEeeeeeeceeecCCceeEEEEEEE
Q 028932 69 HLNSTFGFVIRAHNPNGRASIYYDSIEVSVAYDDQNVAFSTLVPFHQPTRNVTRLDAKIL 128 (201)
Q Consensus 69 ~l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~ 128 (201)
.....+..++.++|... ...+|.=..-. ..+..+. ..-+++...++.+..+.+++.
T Consensus 17 ~~g~~~~~~v~l~N~s~-~p~~f~v~~~~--~~~~~~~-v~~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 17 FVGQTYSRTVTLTNTSS-IPARFRVRQPE--SLSSFFS-VEPPSGFLAPGESVELEVTFS 72 (102)
T ss_pred ccCCEEEEEEEEEECCC-CCEEEEEEeCC--cCCCCEE-EECCCCEECCCCEEEEEEEEE
Confidence 35677888999999985 66666411100 0111221 122345677788888988887
No 34
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=41.41 E-value=2.1e+02 Score=23.81 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=11.7
Q ss_pred eeEEEEEEEEEeCCCCe
Q 028932 70 LNSTFGFVIRAHNPNGR 86 (201)
Q Consensus 70 l~~~~~~~l~v~NPN~~ 86 (201)
+..+=++++.++|.|..
T Consensus 84 i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 84 IQSSRNVTLNARNENGS 100 (264)
T ss_pred EEecCceEEEEecCCCc
Confidence 34455677888888875
No 35
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=39.84 E-value=20 Score=21.18 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHheeeeEEEEeC
Q 028932 27 VLLALIVLAGIVVLIIWLVVKP 48 (201)
Q Consensus 27 ~~~~l~~l~~i~~~i~~lv~rP 48 (201)
++++..+++++....+|..|-|
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCC
Confidence 4455666678888888998877
No 36
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=39.50 E-value=9.8 Score=33.99 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHheeeeEEEEeC
Q 028932 26 IVLLALIVLAGIVVLIIWLVVKP 48 (201)
Q Consensus 26 ~~~~~l~~l~~i~~~i~~lv~rP 48 (201)
.++++++++++++++++|+.++-
T Consensus 356 ~vVlgvavlivVv~viv~vc~~~ 378 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVIVWVCLRC 378 (439)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhheeeee
Confidence 33334444455555566665543
No 37
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.95 E-value=58 Score=26.43 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=25.0
Q ss_pred EEEEeCCCCeeeEEEeceEEEEEECCeEEe--eeeeeceee
Q 028932 77 VIRAHNPNGRASIYYDSIEVSVAYDDQNVA--FSTLVPFHQ 115 (201)
Q Consensus 77 ~l~v~NPN~~~~i~y~~~~~~v~Y~g~~lg--~~~vp~f~q 115 (201)
.|.++||.. ..+.+.+.++.. +|..++ ...++||.+
T Consensus 166 ~l~v~Nptp-y~vtl~~~~l~~--~~~~~~~~~~mv~P~s~ 203 (235)
T COG3121 166 LLTVKNPTP-YYVTLANLTLNV--GGRKLGLNSGMVAPFST 203 (235)
T ss_pred EEEEECCCC-cEEEEEEEEEee--CceecCCCcceECCCcc
Confidence 688999996 778887766666 676665 445555543
No 38
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=38.40 E-value=10 Score=27.31 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=0.0
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHheeeeEEEEe
Q 028932 14 PAKRTGLVRCIAIVLLALIVLAGIVVLIIWLVVK 47 (201)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~~l~~i~~~i~~lv~r 47 (201)
+.+.++.+.+....+++.++++|-++ ..|++|.
T Consensus 25 ~~s~sra~~vagltvLa~LLiAGQa~-TaYfv~~ 57 (114)
T PF09307_consen 25 RGSCSRALKVAGLTVLACLLIAGQAV-TAYFVFQ 57 (114)
T ss_dssp ----------------------------------
T ss_pred CCCccchhHHHHHHHHHHHHHHhHHH-HHHHHHH
Confidence 33334445555555555555566544 4566666
No 39
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=38.15 E-value=35 Score=21.32 Aligned_cols=13 Identities=23% Similarity=0.841 Sum_probs=8.6
Q ss_pred HheeeeEEEEeCC
Q 028932 37 IVVLIIWLVVKPK 49 (201)
Q Consensus 37 i~~~i~~lv~rP~ 49 (201)
++++++|+.-||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 3455678887874
No 40
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=38.08 E-value=9.9 Score=27.39 Aligned_cols=10 Identities=10% Similarity=0.527 Sum_probs=6.6
Q ss_pred eEEEEeCCCC
Q 028932 42 IWLVVKPKRP 51 (201)
Q Consensus 42 ~~lv~rP~~P 51 (201)
+|+.+||+.=
T Consensus 16 ~yf~iRPQkK 25 (113)
T PRK06531 16 IFFMQRQQKK 25 (113)
T ss_pred HHheechHHH
Confidence 4567898653
No 41
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=37.79 E-value=1.3e+02 Score=20.61 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=35.6
Q ss_pred ceeEEEEEEEEEeCCCCeeeEEE---eceEEEEEECCeEEeee--eeeceeecCCceeEEEEEEE
Q 028932 69 HLNSTFGFVIRAHNPNGRASIYY---DSIEVSVAYDDQNVAFS--TLVPFHQPTRNVTRLDAKIL 128 (201)
Q Consensus 69 ~l~~~~~~~l~v~NPN~~~~i~y---~~~~~~v~Y~g~~lg~~--~vp~f~q~~~~t~~v~~~l~ 128 (201)
.+.-.+++.+++.||.. ..++- .=....++|.|...... .......+++++..+...+.
T Consensus 12 ~vG~d~~v~v~~~N~~~-~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSS-EPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp BTTSEEEEEEEEEE-SS-S-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred cCCCCEEEEEEEEeCCc-CccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 46678999999999975 33222 11345668889865332 34456677787777766653
No 42
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=37.53 E-value=2.1e+02 Score=26.22 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=29.3
Q ss_pred EEEeceEEEEEECCeEEeeeeeeceeecCCceeEEEEEEEEeeeecChHHHHHHH-hhhccceEEEEEEEEE
Q 028932 89 IYYDSIEVSVAYDDQNVAFSTLVPFHQPTRNVTRLDAKILAQNVAISSSIAKDLK-LEKTSGEIELAVRVKA 159 (201)
Q Consensus 89 i~y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~v~~~l~~~~~~l~~~~~~~l~-~d~~~g~v~~~v~v~~ 159 (201)
+..+++++.+ |+|.-=|.+.+-. ......++....++++++.+- ..++. .+.-.|...+++.+++
T Consensus 468 l~l~~l~~~l-~~G~~~~~~~ld~----~~~~~~~~~~~~~~~v~l~~L-l~~~~~~~~l~G~~~~~~~l~g 533 (604)
T PF05170_consen 468 LTLDPLSAKL-YGGSLSGSASLDA----RQDPPQYSLNLNLRGVQLQPL-LQDLALPDPLSGTGDLNLDLTG 533 (604)
T ss_pred EEEeeeeEec-CCcEEEEEEEEec----cCCCccEEEeeeeCCcchHHH-HhhhccccCceEEEEEEEEEEe
Confidence 3444555554 6666555555431 122334455555555555432 12222 2234455555544443
No 43
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=37.32 E-value=1.8e+02 Score=21.96 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=6.1
Q ss_pred ecChHHHHHHHh
Q 028932 133 AISSSIAKDLKL 144 (201)
Q Consensus 133 ~l~~~~~~~l~~ 144 (201)
-.++++.+.+++
T Consensus 127 Y~p~ev~~~~~~ 138 (148)
T PRK13254 127 YMPKEVADALKK 138 (148)
T ss_pred CCCHHHHHHHHH
Confidence 344555555554
No 44
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=36.86 E-value=44 Score=23.39 Aligned_cols=11 Identities=18% Similarity=0.621 Sum_probs=5.2
Q ss_pred HheeeeEE-EEe
Q 028932 37 IVVLIIWL-VVK 47 (201)
Q Consensus 37 i~~~i~~l-v~r 47 (201)
++.+|.|+ ++|
T Consensus 77 ily~IyYFVILR 88 (101)
T PF06024_consen 77 ILYAIYYFVILR 88 (101)
T ss_pred HHhhheEEEEEe
Confidence 33444555 454
No 45
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=36.53 E-value=61 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHHHHHheeee
Q 028932 20 LVRCIAIVLLALIVLAGIVVLII 42 (201)
Q Consensus 20 ~~~~~~~~~~~l~~l~~i~~~i~ 42 (201)
+..|+++++-++++++|++..++
T Consensus 37 s~Sg~~l~lG~lvllvGiaMAv~ 59 (141)
T PF10177_consen 37 SPSGLFLLLGILVLLVGIAMAVL 59 (141)
T ss_pred cHHHHHHHHHHHHHHHhhHhhee
Confidence 44456555555666667654443
No 46
>PHA02650 hypothetical protein; Provisional
Probab=35.80 E-value=15 Score=24.59 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=4.4
Q ss_pred HHHheeeeEE
Q 028932 35 AGIVVLIIWL 44 (201)
Q Consensus 35 ~~i~~~i~~l 44 (201)
+.++.+++|+
T Consensus 61 i~~l~~flYL 70 (81)
T PHA02650 61 IVALFSFFVF 70 (81)
T ss_pred HHHHHHHHHH
Confidence 3344444554
No 47
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=35.00 E-value=1.8e+02 Score=21.25 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=28.7
Q ss_pred HHheeee--EEEEeCCCCEEEEeeeEEeeeecCCCceeEEEEEEEEEeCCCCe
Q 028932 36 GIVVLII--WLVVKPKRPVYTIEDGSVHDFNVNNNHLNSTFGFVIRAHNPNGR 86 (201)
Q Consensus 36 ~i~~~i~--~lv~rP~~P~~~v~~~~v~~~~~~~~~l~~~~~~~l~v~NPN~~ 86 (201)
+++.+++ |+.-+++.|.+.+......+- ....+-+-++++|-...
T Consensus 17 ~viglv~y~~l~~~~~pp~l~v~~~~~~r~------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 17 AMFGLVAYDWLRYSNKAAVLEVAPAEVERM------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHhhccCCCCCeEEEeehheeEE------eCCEEEEEEEEEeCCCc
Confidence 3334444 556677889998887766552 33456677777887653
No 48
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=34.52 E-value=27 Score=29.60 Aligned_cols=47 Identities=19% Similarity=0.466 Sum_probs=25.5
Q ss_pred CcchhhHHHHHHHHHHHHHHheeeeEE---EEeCCCCEEEEeeeEEeeeec
Q 028932 18 TGLVRCIAIVLLALIVLAGIVVLIIWL---VVKPKRPVYTIEDGSVHDFNV 65 (201)
Q Consensus 18 ~~~~~~~~~~~~~l~~l~~i~~~i~~l---v~rP~~P~~~v~~~~v~~~~~ 65 (201)
++|+..++.-+++-+++++++++.+|. -+-|+.|++. ++..=+++..
T Consensus 42 ~sW~~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~ 91 (300)
T KOG3927|consen 42 SSWAKILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSF 91 (300)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceee
Confidence 455555433333333444444444443 4789999999 5543345554
No 49
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=33.36 E-value=1.9e+02 Score=22.17 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=10.4
Q ss_pred CCeeeEEEeceEEEEEECCe
Q 028932 84 NGRASIYYDSIEVSVAYDDQ 103 (201)
Q Consensus 84 N~~~~i~y~~~~~~v~Y~g~ 103 (201)
...+.+.|..+-=+++-+|+
T Consensus 88 ~~~v~V~Y~GilPDlFrEG~ 107 (160)
T PRK13165 88 GGSVTVTYEGILPDLFREGQ 107 (160)
T ss_pred CeEEEEEEcccCCccccCCC
Confidence 33456666555555555554
No 50
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=32.51 E-value=64 Score=26.57 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=17.2
Q ss_pred ceeEEEEEEEEEeCCCCeeeEEE
Q 028932 69 HLNSTFGFVIRAHNPNGRASIYY 91 (201)
Q Consensus 69 ~l~~~~~~~l~v~NPN~~~~i~y 91 (201)
++...=++++.++|||..+.=++
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQL 127 (292)
T ss_pred EEEeccCeeEEccCCCCceeeeE
Confidence 45567788999999998765443
No 51
>PRK14772 lipoprotein signal peptidase; Provisional
Probab=31.17 E-value=95 Score=24.47 Aligned_cols=11 Identities=27% Similarity=0.196 Sum_probs=6.3
Q ss_pred EEeCCCCeeeE
Q 028932 79 RAHNPNGRASI 89 (201)
Q Consensus 79 ~v~NPN~~~~i 89 (201)
.++|+..-+++
T Consensus 67 ~v~N~GaAFgl 77 (190)
T PRK14772 67 YIRNSGAAFSI 77 (190)
T ss_pred EEEecCeEeeC
Confidence 35777754444
No 52
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=30.95 E-value=40 Score=22.75 Aligned_cols=12 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCCCCCccccCC
Q 028932 1 MASNPTATQLTA 12 (201)
Q Consensus 1 ~~~~~~~~~~~~ 12 (201)
|+.||.-.+.|-
T Consensus 10 me~pp~ysa~p~ 21 (93)
T PF08999_consen 10 MERPPDYSAAPR 21 (93)
T ss_dssp ------------
T ss_pred hcCCCccccCCC
Confidence 666666555553
No 53
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=30.65 E-value=93 Score=27.24 Aligned_cols=14 Identities=14% Similarity=0.029 Sum_probs=11.2
Q ss_pred EEEEECCeEEeeee
Q 028932 96 VSVAYDDQNVAFST 109 (201)
Q Consensus 96 ~~v~Y~g~~lg~~~ 109 (201)
..|.|+|..+|...
T Consensus 134 s~Vr~~GV~VG~V~ 147 (370)
T PLN03094 134 TPVRIRGVTVGNVV 147 (370)
T ss_pred CceEEcCEEeeEEE
Confidence 36789999999873
No 54
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=30.13 E-value=66 Score=20.13 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=7.8
Q ss_pred CCCCCCcchhhHHHHH
Q 028932 13 APAKRTGLVRCIAIVL 28 (201)
Q Consensus 13 ~~~~~~~~~~~~~~~~ 28 (201)
++.|+..+...+++++
T Consensus 11 ~~~k~~E~~~flfl~~ 26 (56)
T PF06796_consen 11 KSTKRSELKAFLFLAV 26 (56)
T ss_pred cchhHHHHHHHHHHHH
Confidence 4445555555544433
No 55
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=29.79 E-value=2.3e+02 Score=20.84 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=56.7
Q ss_pred CCCEEEEeeeEEeeeecCCCceeEEEEEEEEEeCCCCeeeEEEeceEEEEEECCe--EEeeeeeeceeecCCceeEEEEE
Q 028932 49 KRPVYTIEDGSVHDFNVNNNHLNSTFGFVIRAHNPNGRASIYYDSIEVSVAYDDQ--NVAFSTLVPFHQPTRNVTRLDAK 126 (201)
Q Consensus 49 ~~P~~~v~~~~v~~~~~~~~~l~~~~~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~--~lg~~~vp~f~q~~~~t~~v~~~ 126 (201)
-.|++.+.++.... .+..-.+.+.++||.. .-+.=-.+++.|+..|. .+.......+...|.+.-.+...
T Consensus 26 ~~p~L~l~~v~~~~-------~n~~~~i~~~l~N~~~-~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~ 97 (140)
T PF11797_consen 26 VPPKLKLGKVKPGQ-------INGRNVIQANLQNPQP-AILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIP 97 (140)
T ss_pred cCcccEEeeeeeeE-------ECCeeEEEEEEECCCc-hhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEec
Confidence 35777777776654 4456777888899985 43333467788888774 66777777777777765444332
Q ss_pred EEEeeeecChHHHHHHHhhhccceEEEEEEEEE
Q 028932 127 ILAQNVAISSSIAKDLKLEKTSGEIELAVRVKA 159 (201)
Q Consensus 127 l~~~~~~l~~~~~~~l~~d~~~g~v~~~v~v~~ 159 (201)
+.++ .+..|...+++.++.
T Consensus 98 ~~~~--------------~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 98 LGGK--------------KLKPGKYTLKITAKS 116 (140)
T ss_pred CCCc--------------CccCCEEEEEEEEEc
Confidence 2111 246788888765554
No 56
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=29.38 E-value=40 Score=25.65 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=12.3
Q ss_pred HHHheeeeEEEEeCCCCEE
Q 028932 35 AGIVVLIIWLVVKPKRPVY 53 (201)
Q Consensus 35 ~~i~~~i~~lv~rP~~P~~ 53 (201)
++++++++|+-.|++.=+|
T Consensus 64 l~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 64 LGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHhheeEEEecccCcc
Confidence 4555666777788876544
No 57
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=29.37 E-value=25 Score=26.83 Aligned_cols=13 Identities=23% Similarity=0.984 Sum_probs=9.0
Q ss_pred HHheeeeEEEEeC
Q 028932 36 GIVVLIIWLVVKP 48 (201)
Q Consensus 36 ~i~~~i~~lv~rP 48 (201)
|+++.++|..+||
T Consensus 16 ~~~~y~~W~~~rp 28 (157)
T PF06092_consen 16 ACILYFLWLTLRP 28 (157)
T ss_pred HHHHHhhhhccCC
Confidence 3333778888998
No 58
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=29.07 E-value=25 Score=25.80 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=9.3
Q ss_pred HHHHHHHHheeeeEEE
Q 028932 30 ALIVLAGIVVLIIWLV 45 (201)
Q Consensus 30 ~l~~l~~i~~~i~~lv 45 (201)
.+++++++++++.|++
T Consensus 24 ~L~lVl~lI~~~aWLl 39 (124)
T PRK11486 24 ALIGIIALILAAAWLV 39 (124)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455666667864
No 59
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=28.95 E-value=2.9 Score=28.24 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=0.4
Q ss_pred CCCCCcchhhH
Q 028932 14 PAKRTGLVRCI 24 (201)
Q Consensus 14 ~~~~~~~~~~~ 24 (201)
++++++|++++
T Consensus 61 ~rkKrrwlwLl 71 (81)
T PF14812_consen 61 PRKKRRWLWLL 71 (81)
T ss_dssp ----------T
T ss_pred ccccchhHHHH
Confidence 44445555543
No 60
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=27.61 E-value=10 Score=19.64 Aligned_cols=15 Identities=13% Similarity=0.638 Sum_probs=7.7
Q ss_pred HHHheeeeEEEEeCC
Q 028932 35 AGIVVLIIWLVVKPK 49 (201)
Q Consensus 35 ~~i~~~i~~lv~rP~ 49 (201)
+++.+.++|.+++|.
T Consensus 9 ~~L~~YL~~aLl~PE 23 (25)
T PF09604_consen 9 VALFVYLFYALLRPE 23 (25)
T ss_pred HHHHHHHHHHHhCcc
Confidence 344444455556764
No 61
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=26.72 E-value=70 Score=21.93 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=8.5
Q ss_pred HHHHHheeeeEEEEeCCCC
Q 028932 33 VLAGIVVLIIWLVVKPKRP 51 (201)
Q Consensus 33 ~l~~i~~~i~~lv~rP~~P 51 (201)
+++|++=+++|.+..+..|
T Consensus 41 m~~GllWlvvyYl~~~~~P 59 (87)
T PRK00159 41 MLIGLAWLVVNYLAGPAIP 59 (87)
T ss_pred HHHHHHHHHHHhhccCCCC
Confidence 4455544444444444433
No 62
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=26.69 E-value=37 Score=27.37 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=5.6
Q ss_pred CCCCCcchhhH
Q 028932 14 PAKRTGLVRCI 24 (201)
Q Consensus 14 ~~~~~~~~~~~ 24 (201)
|.++|+.-+.|
T Consensus 6 r~KrRK~N~iL 16 (217)
T PF07423_consen 6 RQKRRKTNKIL 16 (217)
T ss_pred HHHhhhhhhhH
Confidence 44555554444
No 63
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.91 E-value=1.9e+02 Score=22.54 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=15.6
Q ss_pred EEEEEEeCCCCeeeEEEeceEEEEEECCeE
Q 028932 75 GFVIRAHNPNGRASIYYDSIEVSVAYDDQN 104 (201)
Q Consensus 75 ~~~l~v~NPN~~~~i~y~~~~~~v~Y~g~~ 104 (201)
.+++...-++. -+|=.+++.+.+.+..
T Consensus 91 ~fvVNL~~~~~---~ryLkv~i~Le~~~~~ 117 (182)
T PRK08455 91 PFTVNLLSQSG---RRYLKTSISLELSNEK 117 (182)
T ss_pred CEEEEccCCCC---ceEEEEEEEEEECCHh
Confidence 34444443332 3777777888776654
No 64
>PHA03283 envelope glycoprotein E; Provisional
Probab=25.62 E-value=75 Score=29.04 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=6.3
Q ss_pred HHheeeeEEEEe
Q 028932 36 GIVVLIIWLVVK 47 (201)
Q Consensus 36 ~i~~~i~~lv~r 47 (201)
+++++++|.-++
T Consensus 413 ~~~~l~vw~c~~ 424 (542)
T PHA03283 413 LLVALVVWGCIL 424 (542)
T ss_pred HHHHHhhhheee
Confidence 345555665444
No 65
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=25.13 E-value=1.1e+02 Score=17.43 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=10.3
Q ss_pred CCCCCCccccCCCCCCCC
Q 028932 1 MASNPTATQLTAAPAKRT 18 (201)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (201)
|..+|-|-.+|.--+|.+
T Consensus 1 mm~~~NpN~q~VELNRTS 18 (39)
T PRK00753 1 MERNPNPNKQPVELNRTS 18 (39)
T ss_pred CCCCCCCCCCCceechhh
Confidence 444666666665556654
No 66
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=24.96 E-value=50 Score=27.27 Aligned_cols=28 Identities=21% Similarity=0.516 Sum_probs=20.9
Q ss_pred HHHheeeeEEEEeCCCCEEEEeeeEEee
Q 028932 35 AGIVVLIIWLVVKPKRPVYTIEDGSVHD 62 (201)
Q Consensus 35 ~~i~~~i~~lv~rP~~P~~~v~~~~v~~ 62 (201)
+++.++++|....++.|.|.+..+.+++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 42 LLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHheehhhhcCCccceEEEEec
Confidence 3444556677777888889999999886
No 67
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=24.69 E-value=3.4e+02 Score=21.21 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=16.9
Q ss_pred eCCCCEEEEeeeEEeeeecC
Q 028932 47 KPKRPVYTIEDGSVHDFNVN 66 (201)
Q Consensus 47 rP~~P~~~v~~~~v~~~~~~ 66 (201)
.++.|.|.+++++...|+..
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46779999999999888874
No 68
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=24.48 E-value=18 Score=24.90 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=11.1
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHH
Q 028932 13 APAKRTGLVRCIAIVLLALIVLAG 36 (201)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~l~~l~~ 36 (201)
++.+++..++..+.++++++++++
T Consensus 6 kK~K~k~~l~~~~isi~~~lvi~~ 29 (96)
T PF13800_consen 6 KKAKRKSRLRTVVISIISALVIFI 29 (96)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHH
Confidence 344555556654444433433333
No 69
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=24.47 E-value=77 Score=21.73 Aligned_cols=19 Identities=16% Similarity=0.585 Sum_probs=10.1
Q ss_pred HHHHHheeeeEEEEeCCCC
Q 028932 33 VLAGIVVLIIWLVVKPKRP 51 (201)
Q Consensus 33 ~l~~i~~~i~~lv~rP~~P 51 (201)
+++|++=+++|.+..+..|
T Consensus 42 m~~Gl~WlvvyYl~~~~~P 60 (87)
T PRK02251 42 MIIGLIWLVVYYLSNGSLP 60 (87)
T ss_pred HHHHHHHHHHHhhhCCCcC
Confidence 4456555555544555555
No 70
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=24.13 E-value=16 Score=20.81 Aligned_cols=8 Identities=25% Similarity=1.107 Sum_probs=4.0
Q ss_pred eeeeEEEE
Q 028932 39 VLIIWLVV 46 (201)
Q Consensus 39 ~~i~~lv~ 46 (201)
.+|+|+++
T Consensus 25 liif~f~l 32 (43)
T PF11395_consen 25 LIIFWFSL 32 (43)
T ss_pred HHHHHHHH
Confidence 34556544
No 71
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=23.64 E-value=2.8e+02 Score=19.78 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=35.5
Q ss_pred EEeeeeeeceeecCCcee-EEEEEEEEeeeecChHHHHHHHhhh-ccceEEEEEEEEEEEEEEEeeEEecce
Q 028932 104 NVAFSTLVPFHQPTRNVT-RLDAKILAQNVAISSSIAKDLKLEK-TSGEIELAVRVKAKIRFRVGAWKSNHR 173 (201)
Q Consensus 104 ~lg~~~vp~f~q~~~~t~-~v~~~l~~~~~~l~~~~~~~l~~d~-~~g~v~~~v~v~~~v~~kvg~~~~~~~ 173 (201)
++|...+|+....+..+. ..+..+... +.+...++..+. ....+.++++.+ .+.++|.++.+..
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~----d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i 67 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTIT----DQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGI 67 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEec----CHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEE
Confidence 578888999988333322 223334332 223345555554 455577766544 4677887764433
No 72
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=23.62 E-value=61 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=19.5
Q ss_pred CCCCCCCcchhhHHHHHHHHHHHHHHheeeeEEE
Q 028932 12 AAPAKRTGLVRCIAIVLLALIVLAGIVVLIIWLV 45 (201)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~l~~l~~i~~~i~~lv 45 (201)
.||+-.=.-+-.+++.++.+++.+|+.+.+++.+
T Consensus 9 ~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 9 VKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555433334455666666666677776666543
No 73
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=22.70 E-value=46 Score=29.53 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=3.6
Q ss_pred eEEEEeC
Q 028932 42 IWLVVKP 48 (201)
Q Consensus 42 ~~lv~rP 48 (201)
.|+..+|
T Consensus 52 ~~~~~~~ 58 (416)
T PF04415_consen 52 YFLQNQP 58 (416)
T ss_pred HHhhhhH
Confidence 3445565
No 74
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.61 E-value=3.5e+02 Score=20.60 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=25.2
Q ss_pred CCeeeEEEeceEEEEEECCeE-EeeeeeeceeecCCceeEEEEE-EEE--eeeecChHHHHHHHh
Q 028932 84 NGRASIYYDSIEVSVAYDDQN-VAFSTLVPFHQPTRNVTRLDAK-ILA--QNVAISSSIAKDLKL 144 (201)
Q Consensus 84 N~~~~i~y~~~~~~v~Y~g~~-lg~~~vp~f~q~~~~t~~v~~~-l~~--~~~~l~~~~~~~l~~ 144 (201)
+..+.+.|..+-=+++=+|+. ++.+.+. + + .+.++ +-. ++.-.++++.+.|++
T Consensus 82 ~~~v~V~Y~GilPDlFrEGqgVVaeG~~~----~-g---~F~A~~vLAKHde~YmP~Ev~~al~~ 138 (155)
T PRK13159 82 NAATQVEYTGILPDLFRDNQSVIANGRMQ----G-G---RFVANEVLAKHDETYMPKELKDAMAE 138 (155)
T ss_pred CcEEEEEEccCCCccccCCCeEEEEEEEc----C-C---EEEEeEEEecCCCcCCCHHHHHHHHh
Confidence 334666666655555555542 3444432 1 1 23322 222 334556666666664
No 75
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=22.59 E-value=24 Score=21.26 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=4.4
Q ss_pred EEEEeCCC
Q 028932 43 WLVVKPKR 50 (201)
Q Consensus 43 ~lv~rP~~ 50 (201)
+.+++|+.
T Consensus 28 ~wa~~p~~ 35 (48)
T cd01324 28 VWAFRPGR 35 (48)
T ss_pred HHHhCCCc
Confidence 33567753
No 76
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=22.37 E-value=47 Score=24.35 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHheeeeEEEEeCCCCE
Q 028932 22 RCIAIVLLALIVLAGIVVLIIWLVVKPKRPV 52 (201)
Q Consensus 22 ~~~~~~~~~l~~l~~i~~~i~~lv~rP~~P~ 52 (201)
.|++.++...++ +.-+..|.++=|+..|+
T Consensus 91 plliagv~~~vL--agGavAfsivRRs~~~e 119 (133)
T PF10814_consen 91 PLLIAGVAVAVL--AGGAVAFSIVRRSSRPE 119 (133)
T ss_pred chHHHHHHHHHH--hccceEEEEeecCCCCC
Confidence 455555433333 23334455665655443
No 77
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=21.78 E-value=5.9e+02 Score=22.82 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=14.3
Q ss_pred ceeecCCceeEEEEEEEEe
Q 028932 112 PFHQPTRNVTRLDAKILAQ 130 (201)
Q Consensus 112 ~f~q~~~~t~~v~~~l~~~ 130 (201)
++..+++++.++.+.+..+
T Consensus 382 ~i~v~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 382 PIHVKAGEKVKLPVFLRTP 400 (434)
T ss_pred eEEECCCCEEEEEEEEEec
Confidence 6788888888777776654
No 78
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=21.24 E-value=7.5 Score=20.37 Aligned_cols=15 Identities=13% Similarity=0.766 Sum_probs=7.5
Q ss_pred HHHheeeeEEEEeCC
Q 028932 35 AGIVVLIIWLVVKPK 49 (201)
Q Consensus 35 ~~i~~~i~~lv~rP~ 49 (201)
+++.+.++|.++||.
T Consensus 8 ~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 8 VGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHhCHH
Confidence 334444445556663
No 79
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=21.05 E-value=1.5e+02 Score=22.52 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=5.4
Q ss_pred EEeCCCCeeeEE
Q 028932 79 RAHNPNGRASIY 90 (201)
Q Consensus 79 ~v~NPN~~~~i~ 90 (201)
.+-+|..+..+.
T Consensus 66 ~~i~~r~k~svq 77 (158)
T PF11770_consen 66 EVIGPRHKISVQ 77 (158)
T ss_pred cccccccccccc
Confidence 334454444444
No 80
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=20.93 E-value=2.5e+02 Score=18.24 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=10.3
Q ss_pred EEEeCCCCeeeEEEeceEEEEEEC
Q 028932 78 IRAHNPNGRASIYYDSIEVSVAYD 101 (201)
Q Consensus 78 l~v~NPN~~~~i~y~~~~~~v~Y~ 101 (201)
+.++|-.. =.+..+++++.+.-+
T Consensus 56 v~i~h~gG-d~l~~~~l~i~v~~~ 78 (80)
T PF07790_consen 56 VTITHEGG-DPLDVDDLKIVVDGN 78 (80)
T ss_pred EEEEEcCC-CCcccceEEEEEecC
Confidence 44444443 344445544444433
No 81
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.76 E-value=78 Score=25.45 Aligned_cols=17 Identities=18% Similarity=0.575 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhee
Q 028932 24 IAIVLLALIVLAGIVVL 40 (201)
Q Consensus 24 ~~~~~~~l~~l~~i~~~ 40 (201)
+|++++++++|++.+++
T Consensus 132 IClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 132 ICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555554443
No 82
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.75 E-value=34 Score=25.30 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=30.7
Q ss_pred CCCCCCccccCCCCCCCCcchhhHHHHHHHHHHHHHHhe--eeeEEEEeCCCCEEEEeee
Q 028932 1 MASNPTATQLTAAPAKRTGLVRCIAIVLLALIVLAGIVV--LIIWLVVKPKRPVYTIEDG 58 (201)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~i~~--~i~~lv~rP~~P~~~v~~~ 58 (201)
|--|++-+..++.|..|....-|-+..++.+++.+|-++ ++.|+.-|-++|-+.-+.=
T Consensus 1 M~~q~n~v~~~p~~~~r~waml~hls~llglllpfg~llGPlivW~~kK~~sp~vD~qGK 60 (143)
T COG3296 1 MNTQMNDVTNHPNRESRDWAMLAHLSALLGLLLPFGSLLGPLIVWLLKKDSSPFVDAQGK 60 (143)
T ss_pred CCCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Confidence 444554444444344443333454556666655555433 3778877777776554443
No 83
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=20.74 E-value=1.5e+02 Score=21.65 Aligned_cols=8 Identities=38% Similarity=0.771 Sum_probs=4.0
Q ss_pred EEEEEECC
Q 028932 95 EVSVAYDD 102 (201)
Q Consensus 95 ~~~v~Y~g 102 (201)
++.|.|+|
T Consensus 83 ~i~V~Y~G 90 (131)
T PF03100_consen 83 EIPVVYTG 90 (131)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 34555554
No 84
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=20.07 E-value=90 Score=27.41 Aligned_cols=17 Identities=18% Similarity=0.811 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHheeeeE
Q 028932 27 VLLALIVLAGIVVLIIW 43 (201)
Q Consensus 27 ~~~~l~~l~~i~~~i~~ 43 (201)
.++=++|++|+++|++|
T Consensus 33 SLIQ~LIIlgLVLFmVY 49 (442)
T PF06637_consen 33 SLIQFLIILGLVLFMVY 49 (442)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34445666777777766
Done!