BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028933
MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEESASAPAKKPKPT
SPGQGFGSSTLSSSSSTSGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVMSKEDEA
KAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFF
AGTVAYGVLKYLQNEKVKEQK

High Scoring Gene Products

Symbol, full name Information P value
LPA2
low psii accumulation2 		protein from Arabidopsis thaliana 1.5e-35

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028933
        (201 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1009023492 - symbol:LPA2 "low psii accumulatio...   384  1.5e-35   1


>TAIR|locus:1009023492 [details] [associations]
            symbol:LPA2 "low psii accumulation2" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0010207 "photosystem II assembly" evidence=RCA;IMP] [GO:0042651
            "thylakoid membrane" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] [GO:0006364 "rRNA processing"
            evidence=RCA] [GO:0009773 "photosynthetic electron transport in
            photosystem I" evidence=RCA] [GO:0009902 "chloroplast relocation"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
            evidence=RCA] [GO:0042742 "defense response to bacterium"
            evidence=RCA] [GO:0042793 "transcription from plastid promoter"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] EMBL:CP002688 GO:GO:0009534
            GO:GO:0042651 GO:GO:0010207 IPI:IPI00657444 RefSeq:NP_001032057.1
            UniGene:At.63363 PRIDE:F4KDA6 EnsemblPlants:AT5G51545.1
            GeneID:3771487 KEGG:ath:AT5G51545 OMA:ERASIIR PhylomeDB:F4KDA6
            Uniprot:F4KDA6
        Length = 185

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 94/201 (46%), Positives = 111/201 (55%)

Query:     1 MALQIHSPSSFTTKPYHPLQSKPKPKSNLTLTLIKSQNTPINTEPIEEXXXXXXXXXXXX 60
             MALQIHSP SF+T+PYH   +   P+       IK QN+ I ++  E+            
Sbjct:     1 MALQIHSPCSFSTRPYHLFFTTRNPRF-----AIKCQNSQIESDTTEDPSRSKNSSSS-- 53

Query:    61 XXGQGFGXXXXXXXXXXXGKPSVADGSKKKKQPKGRRERASVVRRNPVEKLSVXXXXXXX 120
               G GFG            K S A    KK   KG+RE   V RR PVEK          
Sbjct:    54 --GVGFGSPASSSSPAK--KLSAATSGNKKG--KGKRE---VNRRAPVEKPVFMSEEGAA 104

Query:   121 XXXXXXXXXXXFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFF 180
                        FLL WLG+G +IL +GI LAASGFLPEELDKLFVKY+YP FTP+V LF 
Sbjct:   105 KAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFV 164

Query:   181 AGTVAYGVLKYLQNEKVKEQK 201
             AGT AYGVLKY+QNEK+K Q+
Sbjct:   165 AGTTAYGVLKYIQNEKMKGQE 185


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.136   0.391    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      201       158   0.00085  106 3  11 22  0.40    32
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  123 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.97u 0.12s 14.09t   Elapsed:  00:00:01
  Total cpu time:  13.97u 0.12s 14.09t   Elapsed:  00:00:01
  Start:  Mon May 20 20:38:49 2013   End:  Mon May 20 20:38:50 2013

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