Query 028933
Match_columns 201
No_of_seqs 22 out of 24
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 04:50:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02656 DUF202: Domain of unk 86.4 0.37 8E-06 33.2 1.2 30 126-156 4-33 (73)
2 PF10177 DUF2371: Uncharacteri 82.7 1 2.2E-05 37.1 2.3 25 134-158 40-64 (141)
3 PF14163 SieB: Superinfection 64.9 6.2 0.00013 30.7 2.6 32 155-186 14-46 (151)
4 COG4325 Predicted membrane pro 62.9 22 0.00047 34.6 6.2 70 120-193 77-148 (464)
5 PF09838 DUF2065: Uncharacteri 57.6 19 0.0004 25.3 3.7 30 136-168 2-31 (57)
6 COG2149 Predicted membrane pro 50.5 22 0.00048 29.1 3.6 32 118-150 12-43 (120)
7 PRK10921 twin-arginine protein 44.9 29 0.00064 30.1 3.7 40 126-166 100-139 (258)
8 PF14333 DUF4389: Domain of un 41.5 84 0.0018 22.9 5.1 35 134-168 21-55 (80)
9 PF08285 DPM3: Dolichol-phosph 39.3 47 0.001 25.3 3.7 39 154-194 24-66 (91)
10 PF09731 Mitofilin: Mitochondr 37.1 70 0.0015 29.7 5.1 48 134-184 8-55 (582)
11 PF13126 DUF3975: Protein of u 35.6 32 0.00069 26.7 2.2 16 132-147 8-23 (85)
12 PF10011 DUF2254: Predicted me 35.3 70 0.0015 28.8 4.7 54 132-189 57-110 (371)
13 TIGR00945 tatC Twin arginine t 35.1 41 0.00088 28.0 3.0 38 126-163 89-126 (215)
14 PF12045 DUF3528: Protein of u 34.4 14 0.0003 31.1 0.1 17 150-166 102-118 (143)
15 PF10767 DUF2593: Protein of u 34.3 40 0.00086 28.5 2.8 23 136-158 77-101 (144)
16 COG5477 Predicted small integr 32.5 40 0.00086 26.8 2.4 24 128-151 62-86 (97)
17 TIGR02230 ATPase_gene1 F0F1-AT 32.5 39 0.00085 26.4 2.3 55 134-192 42-96 (100)
18 PF05360 YiaAB: yiaA/B two hel 32.1 27 0.00059 23.9 1.3 50 134-194 4-53 (53)
19 PF00902 TatC: Sec-independent 31.3 67 0.0015 26.4 3.6 41 125-165 92-132 (215)
20 PRK06231 F0F1 ATP synthase sub 30.9 75 0.0016 26.6 3.9 32 145-176 21-52 (205)
21 PF15198 Dexa_ind: Dexamethaso 29.5 93 0.002 24.5 3.9 24 143-166 45-69 (95)
22 PF10270 MMgT: Membrane magnes 29.3 58 0.0013 24.8 2.7 29 138-166 43-71 (106)
23 PHA03131 dUTPase; Provisional 28.3 1E+02 0.0022 27.6 4.5 14 57-70 272-285 (286)
24 PF15345 TMEM51: Transmembrane 28.2 41 0.00089 30.1 2.0 26 130-157 5-30 (233)
25 PF12911 OppC_N: N-terminal TM 27.7 1.5E+02 0.0033 19.1 4.2 24 134-157 17-40 (56)
26 COG3242 Uncharacterized protei 26.5 91 0.002 23.1 3.2 31 135-168 5-35 (62)
27 PF04531 Phage_holin_1: Bacter 26.4 88 0.0019 23.2 3.2 15 175-189 48-62 (84)
28 PF07695 7TMR-DISM_7TM: 7TM di 26.1 1.1E+02 0.0024 22.8 3.7 35 148-185 169-203 (205)
29 PF13349 DUF4097: Domain of un 25.4 29 0.00063 25.9 0.5 16 134-149 8-23 (166)
30 PF05399 EVI2A: Ectropic viral 24.9 42 0.0009 30.1 1.4 18 148-165 177-194 (227)
31 PF13273 DUF4064: Protein of u 24.7 1.6E+02 0.0035 21.2 4.3 34 131-164 5-38 (100)
32 PF11297 DUF3098: Protein of u 24.7 80 0.0017 23.5 2.7 56 135-190 9-66 (69)
33 PF04246 RseC_MucC: Positive r 24.7 55 0.0012 24.9 1.9 26 174-199 99-124 (135)
34 COG3907 PAP2 (acid phosphatase 24.3 1E+02 0.0023 27.9 3.8 16 155-170 43-58 (249)
35 COG4298 Uncharacterized protei 23.7 75 0.0016 25.3 2.5 56 131-197 15-71 (95)
36 cd03499 SQR_TypeC_SdhC Succina 23.3 1.3E+02 0.0028 22.4 3.6 19 147-165 37-55 (117)
37 PRK10862 SoxR reducing system 23.3 1E+02 0.0022 24.8 3.3 22 176-197 108-129 (154)
38 COG4252 Predicted transmembran 23.2 69 0.0015 30.2 2.6 54 127-180 323-385 (400)
39 PF12666 PrgI: PrgI family pro 22.5 1.7E+02 0.0036 20.9 3.9 47 134-192 22-68 (93)
40 COG4603 ABC-type uncharacteriz 22.4 3.5E+02 0.0076 25.1 6.9 70 124-194 8-89 (356)
41 PRK13364 protocatechuate 4,5-d 22.3 54 0.0012 28.8 1.6 16 154-169 200-215 (278)
42 PF01891 CbiM: Cobalt uptake s 22.0 1.3E+02 0.0028 24.6 3.7 60 131-191 139-201 (205)
43 PRK11375 allantoin permease; P 21.9 66 0.0014 29.8 2.2 31 171-201 451-481 (484)
44 PF02038 ATP1G1_PLM_MAT8: ATP1 21.3 96 0.0021 22.1 2.4 18 138-155 20-37 (50)
45 COG4709 Predicted membrane pro 21.1 1.9E+02 0.0042 25.4 4.7 22 131-152 93-114 (195)
46 PF13261 DUF4052: Protein of u 21.0 58 0.0013 29.0 1.5 57 130-189 14-93 (217)
47 TIGR01912 TatC-Arch Twin argin 20.9 1.2E+02 0.0027 25.9 3.5 39 125-163 96-134 (237)
48 PF11381 DUF3185: Protein of u 20.8 1.3E+02 0.0027 21.7 3.0 44 139-182 3-47 (59)
49 PF12650 DUF3784: Domain of un 20.8 1.4E+02 0.003 21.6 3.3 13 143-155 50-62 (97)
50 COG2503 Predicted secreted aci 20.2 55 0.0012 30.1 1.3 20 148-167 100-119 (274)
51 PF14145 YrhK: YrhK-like prote 20.0 1.3E+02 0.0028 21.1 2.9 34 139-187 14-47 (59)
No 1
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=86.45 E-value=0.37 Score=33.22 Aligned_cols=30 Identities=33% Similarity=0.445 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 028933 126 MKNESAFLLAWLGVGGIILFQGIALAASGFL 156 (201)
Q Consensus 126 ~~nE~aFLLa~lglG~vIlveGi~LAASGfL 156 (201)
.+|||.|| +|+=.++.+++-|+++.--...
T Consensus 4 lA~ERT~L-aW~Rt~l~l~~~g~~l~~~~~~ 33 (73)
T PF02656_consen 4 LANERTFL-AWIRTALALVGVGLALLRFFSL 33 (73)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 47999976 9999888888888887765444
No 2
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=82.70 E-value=1 Score=37.08 Aligned_cols=25 Identities=36% Similarity=0.639 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCch
Q 028933 134 LAWLGVGGIILFQGIALAASGFLPE 158 (201)
Q Consensus 134 La~lglG~vIlveGi~LAASGfLPe 158 (201)
-.|+.||++|++.||++|.-|+.|.
T Consensus 40 g~~l~lG~lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 40 GLFLLLGILVLLVGIAMAVLGYWPK 64 (141)
T ss_pred HHHHHHHHHHHHHhhHhheeecccc
Confidence 4567799999999999999999999
No 3
>PF14163 SieB: Superinfection exclusion protein B
Probab=64.89 E-value=6.2 Score=30.74 Aligned_cols=32 Identities=34% Similarity=0.627 Sum_probs=22.8
Q ss_pred CCchHHHHHH-HhhcccCCchhHHHHhhhhhhc
Q 028933 155 FLPEELDKLF-VKYLYPTFTPTVGLFFAGTVAY 186 (201)
Q Consensus 155 fLPee~D~f~-v~~LYPsFTPtv~lFl~~Ss~Y 186 (201)
|+|+++=.++ .+...-.|.|.+++-+.+|++|
T Consensus 14 f~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~ 46 (151)
T PF14163_consen 14 FLPESLLEWLNLDKFEIKYQPWIGLIFLFSVSY 46 (151)
T ss_pred HCCHHHHHHhCcchHHHhcchHHHHHHHHHHHH
Confidence 8999876653 3444456788888877777776
No 4
>COG4325 Predicted membrane protein [Function unknown]
Probab=62.94 E-value=22 Score=34.56 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=51.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhhhcc--eeeecc
Q 028933 120 AKAKEMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYG--VLKYLQ 193 (201)
Q Consensus 120 a~a~~q~~nE~aFLLa~lglG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss~YG--V~Ky~~ 193 (201)
+.+++-..-=.+=.++-.|+.+-|-+..+.||.|+|=|--+|.|+.+.- +=+++.-|+++..|. |+.|..
T Consensus 77 ~dar~vL~vvAaSmisVtg~~fSItvvalqlaSsqfsPRll~~fmrd~~----nqvvLa~FlctFvysl~vlrtvg 148 (464)
T COG4325 77 GDARGVLIVVAASMISVTGIVFSITVVALQLASSQFSPRLLRTFLRDVP----NQVVLAIFLCTFVYSLGVLRTVG 148 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHhhcCc----hHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444455577888888899999999999999999999999863 456777777777764 444433
No 5
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=57.61 E-value=19 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhc
Q 028933 136 WLGVGGIILFQGIALAASGFLPEELDKLFVKYL 168 (201)
Q Consensus 136 ~lglG~vIlveGi~LAASGfLPee~D~f~v~~L 168 (201)
|.++|.+..+||+..++ .|+.|-.++.+-.
T Consensus 2 l~algLvliiEGl~~~l---~P~~~r~~l~~l~ 31 (57)
T PF09838_consen 2 LAALGLVLIIEGLLPFL---APERWRRMLRQLA 31 (57)
T ss_pred HHHHHHHHHHHhhHHHh---CHHHHHHHHHHHH
Confidence 67899999999999887 4999988887654
No 6
>COG2149 Predicted membrane protein [Function unknown]
Probab=50.49 E-value=22 Score=29.11 Aligned_cols=32 Identities=31% Similarity=0.570 Sum_probs=20.2
Q ss_pred cHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 028933 118 DEAKAKEMMKNESAFLLAWLGVGGIILFQGIAL 150 (201)
Q Consensus 118 ~~a~a~~q~~nE~aFLLa~lglG~vIlveGi~L 150 (201)
+++.-+..++||+.|| ||+=-.+.+++-|+++
T Consensus 12 e~pd~R~~lAnERTFL-AWiRTsLallafGvai 43 (120)
T COG2149 12 EEPDYRFTLANERTFL-AWIRTSLALLAFGVAI 43 (120)
T ss_pred cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3445567899999996 5654444455555544
No 7
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=44.94 E-value=29 Score=30.06 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHh
Q 028933 126 MKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFVK 166 (201)
Q Consensus 126 ~~nE~aFLLa~lglG~vIlveGi~LAASGfLPee~D~f~v~ 166 (201)
-++|+.+++.++..+.+.++.|++++--=.+|-.|+ |+..
T Consensus 100 y~~Err~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~-Fl~~ 139 (258)
T PRK10921 100 YKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFG-FLAK 139 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 368999999999999999999999987667888887 4443
No 8
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=41.47 E-value=84 Score=22.89 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhc
Q 028933 134 LAWLGVGGIILFQGIALAASGFLPEELDKLFVKYL 168 (201)
Q Consensus 134 La~lglG~vIlveGi~LAASGfLPee~D~f~v~~L 168 (201)
++..+++++.+++-+++=.+|-.|+.+=.|..+.+
T Consensus 21 ~~~~~~~~~~~~q~~~~L~tg~~p~~L~~f~~~l~ 55 (80)
T PF14333_consen 21 LASIVLGVLVLIQWFAILFTGRYPEPLFDFGAGLS 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHH
Confidence 56667777888888888889999999998877643
No 9
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=39.26 E-value=47 Score=25.26 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=24.5
Q ss_pred CCCc---hHHHHHHHhhcccCCc-hhHHHHhhhhhhcceeeeccc
Q 028933 154 GFLP---EELDKLFVKYLYPTFT-PTVGLFFAGTVAYGVLKYLQN 194 (201)
Q Consensus 154 GfLP---ee~D~f~v~~LYPsFT-Ptv~lFl~~Ss~YGV~Ky~~~ 194 (201)
|.+| +-++..+- +.|.|. =+.|.+.+++++|||+-..+=
T Consensus 24 ~~~~~~~~~~~~ii~--~lP~~~Lv~fG~Ysl~~lgy~v~tFnDc 66 (91)
T PF08285_consen 24 GLLPLPPEPQQEIIP--YLPFYALVSFGCYSLFTLGYGVATFNDC 66 (91)
T ss_pred ccCCCCchhHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 5555 35666553 445544 234667889999999865543
No 10
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.13 E-value=70 Score=29.72 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhh
Q 028933 134 LAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTV 184 (201)
Q Consensus 134 La~lglG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss 184 (201)
|+|+++++.+++-|.+..| +-=+.++.||.+| .|..-.+|-.|.....
T Consensus 8 l~~~~l~~~~~ygG~v~yA--~~n~~f~d~f~~~-vP~~e~lv~~~e~~~~ 55 (582)
T PF09731_consen 8 LLYTTLLGGVGYGGGVYYA--KQNDNFRDFFEEY-VPYGEELVDYIEEEES 55 (582)
T ss_pred HHHHHHHHHHHHHHHHHHh--hcChHHHHHHHHh-CCcHHHHHHHHhhhcc
Confidence 4555555455555544443 2367889999999 9999999988887764
No 11
>PF13126 DUF3975: Protein of unknown function (DUF3975)
Probab=35.58 E-value=32 Score=26.70 Aligned_cols=16 Identities=44% Similarity=0.785 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 028933 132 FLLAWLGVGGIILFQG 147 (201)
Q Consensus 132 FLLa~lglG~vIlveG 147 (201)
-+|+|+-||+|||.+=
T Consensus 8 q~lawitlgivillqi 23 (85)
T PF13126_consen 8 QILAWITLGIVILLQI 23 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3799999999998763
No 12
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=35.34 E-value=70 Score=28.76 Aligned_cols=54 Identities=28% Similarity=0.311 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhhhccee
Q 028933 132 FLLAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVL 189 (201)
Q Consensus 132 FLLa~lglG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss~YGV~ 189 (201)
-+++-.++.+-|.+-.+-+|+|-|=|--+..|+.+. -|-.+++++.++..|+++
T Consensus 57 smitv~~~~fSi~~val~~assq~sPR~l~~f~~d~----~~q~vLg~Figtfvy~l~ 110 (371)
T PF10011_consen 57 SMITVTGFVFSITLVALQLASSQFSPRLLRNFMRDR----VTQVVLGTFIGTFVYSLL 110 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhCc----hHHHHHHHHHHHHHHHHH
Confidence 346666777777888888999999999999999987 588999999999999875
No 13
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=35.14 E-value=41 Score=28.05 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 028933 126 MKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKL 163 (201)
Q Consensus 126 ~~nE~aFLLa~lglG~vIlveGi~LAASGfLPee~D~f 163 (201)
-++|+.+++.++..+.+.++.|++++=.-.+|-.|+=+
T Consensus 89 y~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~F~ 126 (215)
T TIGR00945 89 YEHERRLLLPLLLGSILLFLAGLAFAYYVLFPAALNFL 126 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999888899988833
No 14
>PF12045 DUF3528: Protein of unknown function (DUF3528); InterPro: IPR021918 This domain of unknown function is found at the N terminus of some Homeobox proteins belonging to the ABD-B family. It is found in association with PF00046 from PFAM.
Probab=34.38 E-value=14 Score=31.08 Aligned_cols=17 Identities=29% Similarity=0.729 Sum_probs=14.3
Q ss_pred HHhcCCCchHHHHHHHh
Q 028933 150 LAASGFLPEELDKLFVK 166 (201)
Q Consensus 150 LAASGfLPee~D~f~v~ 166 (201)
++-+|+||+..|+||.-
T Consensus 102 VGRNgVLPQ~FDQFfet 118 (143)
T PF12045_consen 102 VGRNGVLPQGFDQFFET 118 (143)
T ss_pred cccCCcCccccchhccc
Confidence 45789999999999863
No 15
>PF10767 DUF2593: Protein of unknown function (DUF2593); InterPro: IPR019703 This entry represents proteins that appear to be restricted to Enterobacteriaceae. Some members are annotated as YbjO, however there is currently no known function.
Probab=34.31 E-value=40 Score=28.46 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhc--CCCch
Q 028933 136 WLGVGGIILFQGIALAAS--GFLPE 158 (201)
Q Consensus 136 ~lglG~vIlveGi~LAAS--GfLPe 158 (201)
|..++|=|+|.|+.|.|| +|.||
T Consensus 77 W~yl~~Q~~v~~Yml~ASlg~~~Pe 101 (144)
T PF10767_consen 77 WGYLACQILVVGYMLMASLGWFYPE 101 (144)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcc
Confidence 777888899999999999 77886
No 16
>COG5477 Predicted small integral membrane protein [Function unknown]
Probab=32.48 E-value=40 Score=26.81 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=15.4
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHH
Q 028933 128 NESAFL-LAWLGVGGIILFQGIALA 151 (201)
Q Consensus 128 nE~aFL-La~lglG~vIlveGi~LA 151 (201)
--+||+ |||+||..-=+--|++|+
T Consensus 62 LgsAyIhLAWlGLvg~nlWwa~alS 86 (97)
T COG5477 62 LGSAYIHLAWLGLVGENLWWALALS 86 (97)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHH
Confidence 345777 999998765555555444
No 17
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.48 E-value=39 Score=26.37 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhhhcceeeec
Q 028933 134 LAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYL 192 (201)
Q Consensus 134 La~lglG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss~YGV~Ky~ 192 (201)
|+.+|.-++-++..+++++ |+=--+|+++-. -|+||-+.+++=++..+|.+++..
T Consensus 42 l~~~g~IG~~~v~pil~G~--~lG~WLD~~~~t--~~~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGV--AVGIWLDRHYPS--PFSWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhhcCC--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433333333333333 233456766653 346776655555556666666543
No 18
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=32.11 E-value=27 Score=23.92 Aligned_cols=50 Identities=26% Similarity=0.417 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhhhcceeeeccc
Q 028933 134 LAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQN 194 (201)
Q Consensus 134 La~lglG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss~YGV~Ky~~~ 194 (201)
.+|+.+++ |+++-+-|..--.+|-|...|+ .+++.++..++.-+-|+..|
T Consensus 4 ~~~~~f~i-----~~~~~~iGl~~~~~~l~~KGy~------~~~~l~~l~s~~tl~K~vRD 53 (53)
T PF05360_consen 4 QSWISFGI-----SIVLMLIGLWNAPLDLSEKGYY------AMGLLFLLFSAFTLQKTVRD 53 (53)
T ss_pred HHHHHHHH-----HHHHHHHHHHhCCCCHHHHHHH------HHHHHHHHHHHHhhhhhcCC
Confidence 45655443 3333333433344677777665 36666777777888887665
No 19
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=31.31 E-value=67 Score=26.41 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=35.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Q 028933 125 MMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKLFV 165 (201)
Q Consensus 125 q~~nE~aFLLa~lglG~vIlveGi~LAASGfLPee~D~f~v 165 (201)
--++|+.++..++..+.+.++.|++.+=--.+|-.|+=+..
T Consensus 92 L~~~Er~~~~~~~~~~~~lf~~g~~f~y~~ilP~~~~fl~~ 132 (215)
T PF00902_consen 92 LYKHERRFFKKFVLISFILFLLGVAFAYFVILPLILKFLLS 132 (215)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999988875544
No 20
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=30.92 E-value=75 Score=26.57 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCchHHHHHHHhhcccCCchhH
Q 028933 145 FQGIALAASGFLPEELDKLFVKYLYPTFTPTV 176 (201)
Q Consensus 145 veGi~LAASGfLPee~D~f~v~~LYPsFTPtv 176 (201)
+--+..+.+|=.||-=-+=+++.++|.+.-++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 52 (205)
T PRK06231 21 ISLFLVSCTENVEELKSKSIINELFPNFWVFI 52 (205)
T ss_pred HHHHHHHccCChhhcCHHHHHHHhcCcHHHHH
Confidence 34466678898898888889999999875443
No 21
>PF15198 Dexa_ind: Dexamethasone-induced
Probab=29.45 E-value=93 Score=24.55 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=19.0
Q ss_pred HHHHHHHHHhc-CCCchHHHHHHHh
Q 028933 143 ILFQGIALAAS-GFLPEELDKLFVK 166 (201)
Q Consensus 143 IlveGi~LAAS-GfLPee~D~f~v~ 166 (201)
.|.|=|+|..- =||||++|+-+++
T Consensus 45 flmeyivlnvgivflpedmdqalvd 69 (95)
T PF15198_consen 45 FLMEYIVLNVGIVFLPEDMDQALVD 69 (95)
T ss_pred HHHHHHHHhceeEEcchhHHHHHHH
Confidence 45677777665 7999999998876
No 22
>PF10270 MMgT: Membrane magnesium transporter; InterPro: IPR018937 This entry represents a novel family of membrane magnesium transporters (MMgT) []. The proteins, MMgT1 and MMgT2, are localised to the Golgi complex and post-Golgi vesicles, including the early endosomes, suggesting that they may provide regulated pathways for Mg2+ transport in the Golgi and post-Golgi organelles of epithelium-derived cells [].
Probab=29.32 E-value=58 Score=24.82 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHh
Q 028933 138 GVGGIILFQGIALAASGFLPEELDKLFVK 166 (201)
Q Consensus 138 glG~vIlveGi~LAASGfLPee~D~f~v~ 166 (201)
-+|+++++-|+++.+.-|-|=.||.|..+
T Consensus 43 lv~l~l~~~G~v~~~~~l~~I~~~~~~~~ 71 (106)
T PF10270_consen 43 LVSLILFVFGIVLSAGKLKPISWSEYASE 71 (106)
T ss_pred HHHHHHHHHHHHHccCCCccccHHHhHHH
Confidence 36778999999999999999999888765
No 23
>PHA03131 dUTPase; Provisional
Probab=28.27 E-value=1e+02 Score=27.57 Aligned_cols=14 Identities=43% Similarity=0.764 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCC
Q 028933 57 PKPTSPGQGFGSST 70 (201)
Q Consensus 57 ~~p~s~G~GFGs~~ 70 (201)
+++.....|||||.
T Consensus 272 ~~~~r~~~g~gssg 285 (286)
T PHA03131 272 SDPSRGTKGFGSSG 285 (286)
T ss_pred CCcccccccCCCCC
Confidence 46677889999974
No 24
>PF15345 TMEM51: Transmembrane protein 51
Probab=28.23 E-value=41 Score=30.08 Aligned_cols=26 Identities=35% Similarity=0.625 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 028933 130 SAFLLAWLGVGGIILFQGIALAASGFLP 157 (201)
Q Consensus 130 ~aFLLa~lglG~vIlveGi~LAASGfLP 157 (201)
+-|-|..+|+| ++|.||+++.-.+.|
T Consensus 5 shYAL~AiG~G--ml~LGiiM~vW~~VP 30 (233)
T PF15345_consen 5 SHYALTAIGVG--MLALGIIMIVWNLVP 30 (233)
T ss_pred hhHHHHHHhHh--HHHHhhHheeeeecc
Confidence 44667777777 888999999887766
No 25
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=27.66 E-value=1.5e+02 Score=19.12 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Q 028933 134 LAWLGVGGIILFQGIALAASGFLP 157 (201)
Q Consensus 134 La~lglG~vIlveGi~LAASGfLP 157 (201)
+|++|+.+++++..+++-+.=+.|
T Consensus 17 ~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 17 LAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 677777767776666666653444
No 26
>COG3242 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.48 E-value=91 Score=23.14 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhc
Q 028933 135 AWLGVGGIILFQGIALAASGFLPEELDKLFVKYL 168 (201)
Q Consensus 135 a~lglG~vIlveGi~LAASGfLPee~D~f~v~~L 168 (201)
.|+++|.|..+||+.. ++-|..|-+-+..-+
T Consensus 5 ~~~Al~LVlVlEGL~p---~l~P~~wkk~~~~l~ 35 (62)
T COG3242 5 LWLALGLVLVLEGLGP---FLAPRAWKKMATALL 35 (62)
T ss_pred HHHHHHHHHHHhcccc---ccChHHHHHHHHHHH
Confidence 5788999999999975 677888888777643
No 27
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.44 E-value=88 Score=23.15 Aligned_cols=15 Identities=20% Similarity=0.313 Sum_probs=11.8
Q ss_pred hHHHHhhhhhhccee
Q 028933 175 TVGLFFAGTVAYGVL 189 (201)
Q Consensus 175 tv~lFl~~Ss~YGV~ 189 (201)
.+...+++-+++|++
T Consensus 48 ~v~~vl~iL~~~Gii 62 (84)
T PF04531_consen 48 IVNAVLTILVILGII 62 (84)
T ss_pred HHHHHHHHHHHheee
Confidence 567777788889987
No 28
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=26.10 E-value=1.1e+02 Score=22.82 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=18.5
Q ss_pred HHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhhh
Q 028933 148 IALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVA 185 (201)
Q Consensus 148 i~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss~ 185 (201)
-.|...|.+|.. +...++.+...-...++++++.+
T Consensus 169 ~~l~~~~~l~~~---~~~~~~~~~~~~~~~l~ls~~la 203 (205)
T PF07695_consen 169 DILRLFGLLPFN---FFTGYLFPIGFLLEVLLLSLALA 203 (205)
T ss_pred HHHHHcCccCCc---hHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567999876 33335555444444444444433
No 29
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=25.44 E-value=29 Score=25.85 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028933 134 LAWLGVGGIILFQGIA 149 (201)
Q Consensus 134 La~lglG~vIlveGi~ 149 (201)
+.++.+|+++++.|+.
T Consensus 8 ~~l~viG~il~~~g~~ 23 (166)
T PF13349_consen 8 LILIVIGIILIGIGFF 23 (166)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455554444433
No 30
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.94 E-value=42 Score=30.11 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=13.7
Q ss_pred HHHHhcCCCchHHHHHHH
Q 028933 148 IALAASGFLPEELDKLFV 165 (201)
Q Consensus 148 i~LAASGfLPee~D~f~v 165 (201)
=+||.||+-|.|-|-|=.
T Consensus 177 DFLASSgLWPa~sdTWkR 194 (227)
T PF05399_consen 177 DFLASSGLWPAESDTWKR 194 (227)
T ss_pred ceeeccccCccccchhhh
Confidence 356778999998888854
No 31
>PF13273 DUF4064: Protein of unknown function (DUF4064)
Probab=24.74 E-value=1.6e+02 Score=21.23 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Q 028933 131 AFLLAWLGVGGIILFQGIALAASGFLPEELDKLF 164 (201)
Q Consensus 131 aFLLa~lglG~vIlveGi~LAASGfLPee~D~f~ 164 (201)
-++|+|+|...-|+.-.+.+-...+-.++.+...
T Consensus 5 E~iL~~Ig~il~il~~~~~l~~~~~~~~~~~~~~ 38 (100)
T PF13273_consen 5 EKILGWIGGILGILFGFFGLLIGFFGNSEFKEEL 38 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3789998877666655555555555444555444
No 32
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=24.73 E-value=80 Score=23.51 Aligned_cols=56 Identities=21% Similarity=0.282 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHhhcccCCchhHHHHhhhhhhcceee
Q 028933 135 AWLGVGGIILFQGIALAASGF--LPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLK 190 (201)
Q Consensus 135 a~lglG~vIlveGi~LAASGf--LPee~D~f~v~~LYPsFTPtv~lFl~~Ss~YGV~K 190 (201)
-|++.|+++.+.|.+|-.-|- -|..||.=+-...==...|+|++.=-....|++++
T Consensus 9 ill~iG~~vIilGfilMsg~~s~dp~~fn~~Ifs~~rI~vAPiv~~~Gf~~~i~AIl~ 66 (69)
T PF11297_consen 9 ILLAIGIAVIILGFILMSGGGSDDPNVFNPDIFSFRRITVAPIVVLIGFVIIIYAILY 66 (69)
T ss_pred HHHHHHHHHHHHHHHheeCCCCCCccccCccccceeeEEehhHHHHHHHHHHhheEEe
Confidence 356677888888988865433 24444421111111123566665555556687775
No 33
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.67 E-value=55 Score=24.92 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=19.9
Q ss_pred hhHHHHhhhhhhcceeeecccchhhc
Q 028933 174 PTVGLFFAGTVAYGVLKYLQNEKVKE 199 (201)
Q Consensus 174 Ptv~lFl~~Ss~YGV~Ky~~~e~~k~ 199 (201)
-.+++++++..+|.++|+++....++
T Consensus 99 ~~l~~l~~l~~~~~~~~~~~~~~~~~ 124 (135)
T PF04246_consen 99 AILGGLLGLALGFLILRLFDRRLKKK 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 46788888999999999887655443
No 34
>COG3907 PAP2 (acid phosphatase) superfamily protein [General function prediction only]
Probab=24.30 E-value=1e+02 Score=27.91 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCchHHHHHHHhhccc
Q 028933 155 FLPEELDKLFVKYLYP 170 (201)
Q Consensus 155 fLPee~D~f~v~~LYP 170 (201)
++|+.+|.|+.+++|-
T Consensus 43 ~~~~~lD~~lanl~yd 58 (249)
T COG3907 43 LMGLALDQWLANLLYD 58 (249)
T ss_pred HhhhhHHHHHHHhccC
Confidence 6899999999999984
No 35
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.75 E-value=75 Score=25.28 Aligned_cols=56 Identities=23% Similarity=0.533 Sum_probs=39.6
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhhhcceeeecccchh
Q 028933 131 AFL-LAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYLQNEKV 197 (201)
Q Consensus 131 aFL-La~lglG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss~YGV~Ky~~~e~~ 197 (201)
|++ +-|.++|+.++..|+-+- .|| +|-|+.+|+| +|+-|+-.+..-+.||+.|+..
T Consensus 15 awi~f~waafg~s~~m~~~gi~---~lP--VD~w~KGy~~------MG~lfltgSt~tL~K~~rD~he 71 (95)
T COG4298 15 AWIMFNWAAFGASYFMLGLGIW---LLP--VDLWTKGYWA------MGILFLTGSTVTLVKYRRDEHE 71 (95)
T ss_pred hhHhHHHHHHHHHHHHHHHHhh---eec--hHHHHHHHHH------HHHHHHhcchhhhhHHhhhHHH
Confidence 344 668888877776655332 244 7889999976 6666666677889999998753
No 36
>cd03499 SQR_TypeC_SdhC Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein a
Probab=23.30 E-value=1.3e+02 Score=22.41 Aligned_cols=19 Identities=26% Similarity=0.065 Sum_probs=12.5
Q ss_pred HHHHHhcCCCchHHHHHHH
Q 028933 147 GIALAASGFLPEELDKLFV 165 (201)
Q Consensus 147 Gi~LAASGfLPee~D~f~v 165 (201)
.+.+..+..-|+..|.|..
T Consensus 37 ~~~~~~~~~~~~~y~~~~~ 55 (117)
T cd03499 37 LWWLLASLSSPESFESVSA 55 (117)
T ss_pred HHHHHHHhcCHHHHHHHHH
Confidence 3444445558999999744
No 37
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=23.25 E-value=1e+02 Score=24.84 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=15.7
Q ss_pred HHHHhhhhhhcceeeecccchh
Q 028933 176 VGLFFAGTVAYGVLKYLQNEKV 197 (201)
Q Consensus 176 v~lFl~~Ss~YGV~Ky~~~e~~ 197 (201)
+++++++..+|.+.|.++..-.
T Consensus 108 ~~~~~g~~~g~~~~r~~~~~~~ 129 (154)
T PRK10862 108 CGALLGGVGGFLLARGLSRKLA 129 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5677777888998887665433
No 38
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=23.21 E-value=69 Score=30.18 Aligned_cols=54 Identities=22% Similarity=0.442 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHH---------HHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHh
Q 028933 127 KNESAFLLAWLGVGGIILF---------QGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFF 180 (201)
Q Consensus 127 ~nE~aFLLa~lglG~vIlv---------eGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl 180 (201)
--|-..+++|..+|++|.- ..+.++..|.+=-.+=-|+..-..|...|.++++.
T Consensus 323 ~~e~l~i~~w~~~g~~~aw~~r~~~~~~l~~~~~~~~l~~~s~~l~l~gwwiP~ip~ll~l~~ 385 (400)
T COG4252 323 GAELLWIFAWSLLGGLLAWRLRSPLRLLLAVGLALAGLLLISYLLFLAGWWIPLIPPLLALVG 385 (400)
T ss_pred HHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3467777888888777643 24445555655556666777776666666665533
No 39
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=22.48 E-value=1.7e+02 Score=20.90 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhhhcceeeec
Q 028933 134 LAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYL 192 (201)
Q Consensus 134 La~lglG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss~YGV~Ky~ 192 (201)
++|+++++++. -|+++....++|...-.|+ ++...+...+.|.+|..
T Consensus 22 l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~-----------~i~~~~p~~~~g~~k~~ 68 (93)
T PF12666_consen 22 LICLAIGALVG-VGVYLLLWFFLGPDIASWI-----------MIPIALPFAFLGFFKKD 68 (93)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhccHHHHHHH-----------HHHHHHHHHHhHhhhhc
Confidence 67777775554 5666767888885555544 33444445556666653
No 40
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.37 E-value=3.5e+02 Score=25.12 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=46.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHhhcccC---------CchhHHHHhhhhhhc--ceeee
Q 028933 124 EMMKNESAFLLAWLGVGGIILFQGIALAASGFLPEE-LDKLFVKYLYPT---------FTPTVGLFFAGTVAY--GVLKY 191 (201)
Q Consensus 124 ~q~~nE~aFLLa~lglG~vIlveGi~LAASGfLPee-~D~f~v~~LYPs---------FTPtv~lFl~~Ss~Y--GV~Ky 191 (201)
++.+- ..++...+++.+.+++-+++++..|.=|-+ +..+|++-+... .||.+..=|++++|| |++-.
T Consensus 8 ~~~~~-~~~~~pl~ai~l~~~~~a~~~~~~G~~p~~~~~~lf~~~f~~~~~i~~~l~~~~pliltgL~~ava~raGlfNI 86 (356)
T COG4603 8 KRSRL-RSILSPLIAILLALIVGALLLLLLGYDPLAAYSALFVGAFGSPWSIGELLVKAAPLILTGLGVAVAFRAGLFNI 86 (356)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeee
Confidence 33444 666766667777788899999999999974 444555544443 477777777777776 55554
Q ss_pred ccc
Q 028933 192 LQN 194 (201)
Q Consensus 192 ~~~ 194 (201)
+.+
T Consensus 87 G~E 89 (356)
T COG4603 87 GAE 89 (356)
T ss_pred ChH
Confidence 443
No 41
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=22.26 E-value=54 Score=28.84 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=14.6
Q ss_pred CCCchHHHHHHHhhcc
Q 028933 154 GFLPEELDKLFVKYLY 169 (201)
Q Consensus 154 GfLPee~D~f~v~~LY 169 (201)
|+++++||+.|++.|-
T Consensus 200 G~~~~~fD~~~l~~l~ 215 (278)
T PRK13364 200 GFINKDFDLQCMDSLV 215 (278)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 7899999999999885
No 42
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=22.03 E-value=1.3e+02 Score=24.59 Aligned_cols=60 Identities=27% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHhhcccCCchhHH--HHhhhhhhcceeee
Q 028933 131 AFLLAWLGVGGIILFQGIALAASGF-LPEELDKLFVKYLYPTFTPTVG--LFFAGTVAYGVLKY 191 (201)
Q Consensus 131 aFLLa~lglG~vIlveGi~LAASGf-LPee~D~f~v~~LYPsFTPtv~--lFl~~Ss~YGV~Ky 191 (201)
.|+-+|++..+..++-++.++.+|. -+..|+..+..++ |.+-|... +|+-+.+.-.+.||
T Consensus 139 ~F~ag~l~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-~~~~~l~~~Eg~ltg~~v~~l~~~ 201 (205)
T PF01891_consen 139 GFLAGFLSVLLAALAVSLVLGLSGTAGDYPWMALVQAYL-PSHLLLAFPEGFLTGMVVTFLVVY 201 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777788888888865 3456777666655 55555432 23334443333333
No 43
>PRK11375 allantoin permease; Provisional
Probab=21.93 E-value=66 Score=29.81 Aligned_cols=31 Identities=29% Similarity=0.113 Sum_probs=19.9
Q ss_pred CCchhHHHHhhhhhhcceeeecccchhhccC
Q 028933 171 TFTPTVGLFFAGTVAYGVLKYLQNEKVKEQK 201 (201)
Q Consensus 171 sFTPtv~lFl~~Ss~YGV~Ky~~~e~~k~qk 201 (201)
.+.+.+++.+++.+-|.+.|.+..++..|||
T Consensus 451 ~~~~~~g~iva~~~Y~~l~~~~~~~~~~~~~ 481 (484)
T PRK11375 451 RVSWFVGVIVAFVAYALLKKRTTAEKTGEQK 481 (484)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCCccccccc
Confidence 4556666655555556777777777776664
No 44
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=21.27 E-value=96 Score=22.06 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 028933 138 GVGGIILFQGIALAASGF 155 (201)
Q Consensus 138 glG~vIlveGi~LAASGf 155 (201)
-+++|.++.||++..||.
T Consensus 20 i~A~vlfi~Gi~iils~k 37 (50)
T PF02038_consen 20 IFAGVLFILGILIILSGK 37 (50)
T ss_dssp HHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 355688889999988874
No 45
>COG4709 Predicted membrane protein [Function unknown]
Probab=21.15 E-value=1.9e+02 Score=25.42 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 028933 131 AFLLAWLGVGGIILFQGIALAA 152 (201)
Q Consensus 131 aFLLa~lglG~vIlveGi~LAA 152 (201)
+++.-|+.++.+.++.|+.+++
T Consensus 93 v~i~Lpl~~~vi~~viailv~~ 114 (195)
T COG4709 93 VIIGLPLLIGVILFVIAILVAA 114 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566655555555554443
No 46
>PF13261 DUF4052: Protein of unknown function (DUF4052)
Probab=20.95 E-value=58 Score=28.98 Aligned_cols=57 Identities=32% Similarity=0.612 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc------CCCchHHHH--------------HHHhhccc---CCchhHHHHhhhhhhc
Q 028933 130 SAFLLAWLGVGGIILFQGIALAAS------GFLPEELDK--------------LFVKYLYP---TFTPTVGLFFAGTVAY 186 (201)
Q Consensus 130 ~aFLLa~lglG~vIlveGi~LAAS------GfLPee~D~--------------f~v~~LYP---sFTPtv~lFl~~Ss~Y 186 (201)
.|.|.+|.. +.+..|..-|+. |||||-+.. ++++-++| +|--|=.-|+.|++||
T Consensus 14 KAiliFWiv---AllIKg~~~a~dlk~ikv~fL~dI~NNpSIaI~~FIVvS~F~IQ~D~F~laVSFGvTRlQffIGsvCy 90 (217)
T PF13261_consen 14 KAILIFWIV---ALLIKGTTSATDLKGIKVGFLQDIFNNPSIAIIFFIVVSVFIIQDDLFRLAVSFGVTRLQFFIGSVCY 90 (217)
T ss_pred HHHHHHHHH---HHHHcCccchhhhccchhhhHHHHhcCCceeEeeeehhhhhhhhhhhhhhhhhcchhhhHHHHHHHHH
Confidence 578889965 567778776665 999987642 34566665 6888888999999999
Q ss_pred cee
Q 028933 187 GVL 189 (201)
Q Consensus 187 GV~ 189 (201)
=++
T Consensus 91 I~L 93 (217)
T PF13261_consen 91 IIL 93 (217)
T ss_pred HHH
Confidence 654
No 47
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=20.85 E-value=1.2e+02 Score=25.90 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=32.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Q 028933 125 MMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKL 163 (201)
Q Consensus 125 q~~nE~aFLLa~lglG~vIlveGi~LAASGfLPee~D~f 163 (201)
--++|+.+++-++..+.+.++.|.+++=--.+|-.|+=+
T Consensus 96 Ly~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~f~ 134 (237)
T TIGR01912 96 LKPHERRQVRLLGVIAVGLFAFGALFAYWVIFPLIFQIL 134 (237)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346798899888888889999999998777889998844
No 48
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.83 E-value=1.3e+02 Score=21.71 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhcCC-CchHHHHHHHhhcccCCchhHHHHhhh
Q 028933 139 VGGIILFQGIALAASGF-LPEELDKLFVKYLYPTFTPTVGLFFAG 182 (201)
Q Consensus 139 lG~vIlveGi~LAASGf-LPee~D~f~v~~LYPsFTPtv~lFl~~ 182 (201)
+|++++|.|++|..-|. ..+++-+=+.+.+=.++|.-...++++
T Consensus 3 igi~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~lig 47 (59)
T PF11381_consen 3 IGIALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIG 47 (59)
T ss_pred eeehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHh
Confidence 46677788888877754 455555566677778888776666654
No 49
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=20.82 E-value=1.4e+02 Score=21.60 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=6.4
Q ss_pred HHHHHHHHHhcCC
Q 028933 143 ILFQGIALAASGF 155 (201)
Q Consensus 143 IlveGi~LAASGf 155 (201)
.++-|+++.+.++
T Consensus 50 ~~~~~i~~li~~l 62 (97)
T PF12650_consen 50 MLIIGIILLIGGL 62 (97)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555544
No 50
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=20.19 E-value=55 Score=30.07 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=16.4
Q ss_pred HHHHhcCCCchHHHHHHHhh
Q 028933 148 IALAASGFLPEELDKLFVKY 167 (201)
Q Consensus 148 i~LAASGfLPee~D~f~v~~ 167 (201)
.++.-.||=||.||.|+.+.
T Consensus 100 ~v~nnk~f~pe~Wd~wV~a~ 119 (274)
T COG2503 100 QVLNNKGFTPETWDKWVQAK 119 (274)
T ss_pred hhhcCCCCCccchHHHHhhc
Confidence 35566799999999999875
No 51
>PF14145 YrhK: YrhK-like protein
Probab=20.02 E-value=1.3e+02 Score=21.13 Aligned_cols=34 Identities=38% Similarity=0.737 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhhhhhcc
Q 028933 139 VGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAGTVAYG 187 (201)
Q Consensus 139 lG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~Ss~YG 187 (201)
+|++.+..|=+| |||+++. +.-+.+|++||..|.
T Consensus 14 ~~~~~FliGSil----fl~~~~~-----------~~g~wlFiiGS~~f~ 47 (59)
T PF14145_consen 14 IGGLLFLIGSIL----FLPESLY-----------TAGTWLFIIGSILFL 47 (59)
T ss_pred HHHHHHHHHHHH----HcCchhH-----------HHHHHHHHHHHHHHH
Confidence 455677777666 5666543 666778889988764
Done!