Query 028933
Match_columns 201
No_of_seqs 22 out of 24
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 07:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lom_A HIG1 domain family memb 27.6 19 0.00065 26.7 0.0 33 160-192 17-49 (93)
2 2jp3_A FXYD domain-containing 18.8 79 0.0027 22.7 2.7 18 138-155 23-40 (67)
3 2zxe_G FXYD10, phospholemman-l 17.5 89 0.003 22.8 2.7 19 138-156 25-43 (74)
4 2lon_A HIG1 domain family memb 20.1 33 0.0011 25.7 0.0 33 160-192 18-50 (99)
5 3arc_X Photosystem II PSBX pro 14.4 1.9E+02 0.0065 18.8 3.4 21 130-150 7-27 (39)
6 2rh1_A Beta-2-adrenergic recep 13.7 2.5E+02 0.0084 23.1 4.8 51 125-178 410-462 (500)
7 2jo1_A Phospholemman; FXYD1, N 13.3 93 0.0032 22.7 1.9 19 138-156 22-40 (72)
8 4b4a_A TATC, SEC-independent p 12.8 56 0.0019 27.0 0.7 36 126-161 93-128 (249)
9 1am7_A Lysozyme; glycosidase, 12.3 96 0.0033 24.6 1.9 20 155-174 69-88 (158)
10 2y69_M Cytochrome C oxidase po 11.3 76 0.0026 22.8 0.9 45 102-151 14-59 (70)
No 1
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=27.57 E-value=19 Score=26.66 Aligned_cols=33 Identities=36% Similarity=0.322 Sum_probs=22.4
Q ss_pred HHHHHHhhcccCCchhHHHHhhhhhhcceeeec
Q 028933 160 LDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYL 192 (201)
Q Consensus 160 ~D~f~v~~LYPsFTPtv~lFl~~Ss~YGV~Ky~ 192 (201)
+|+|+.+.-.=-|-|+-.+=+++.++||++++.
T Consensus 17 ~~K~~rk~ke~PlvpIg~~~~~~vl~~Gl~~~~ 49 (93)
T 2lom_A 17 GSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLK 49 (93)
Confidence 466666666655666655556667788888887
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=18.80 E-value=79 Score=22.69 Aligned_cols=18 Identities=50% Similarity=0.693 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 028933 138 GVGGIILFQGIALAASGF 155 (201)
Q Consensus 138 glG~vIlveGi~LAASGf 155 (201)
-+++|+++.||++..||.
T Consensus 23 ifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 355688899999999974
No 3
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=17.45 E-value=89 Score=22.82 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 028933 138 GVGGIILFQGIALAASGFL 156 (201)
Q Consensus 138 glG~vIlveGi~LAASGfL 156 (201)
-+++|+++.||++..||..
T Consensus 25 ifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred hhHHHHHHHHHHHHHcCcc
Confidence 3556889999999999875
No 4
>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=20.11 E-value=33 Score=25.67 Aligned_cols=33 Identities=18% Similarity=0.043 Sum_probs=20.0
Q ss_pred HHHHHHhhcccCCchhHHHHhhhhhhcceeeec
Q 028933 160 LDKLFVKYLYPTFTPTVGLFFAGTVAYGVLKYL 192 (201)
Q Consensus 160 ~D~f~v~~LYPsFTPtv~lFl~~Ss~YGV~Ky~ 192 (201)
+|+|+.+.-.=-|-|+-.+=+++.++||++++.
T Consensus 18 ~~K~~rk~ke~PlvpIg~l~~~~vl~~Gl~~~~ 50 (99)
T 2lon_A 18 SEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLR 50 (99)
Confidence 355555555555556555556666777777774
No 5
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=14.35 E-value=1.9e+02 Score=18.75 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028933 130 SAFLLAWLGVGGIILFQGIAL 150 (201)
Q Consensus 130 ~aFLLa~lglG~vIlveGi~L 150 (201)
..||+..++-|.|+.+.+++|
T Consensus 7 ~nFl~Sl~aG~vvvv~i~~al 27 (39)
T 3arc_X 7 KGFFIGLLSGAVVLGLTFAVL 27 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 458877766454444444443
No 6
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=13.70 E-value=2.5e+02 Score=23.12 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=31.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH--HHhhcccCCchhHHH
Q 028933 125 MMKNESAFLLAWLGVGGIILFQGIALAASGFLPEELDKL--FVKYLYPTFTPTVGL 178 (201)
Q Consensus 125 q~~nE~aFLLa~lglG~vIlveGi~LAASGfLPee~D~f--~v~~LYPsFTPtv~l 178 (201)
-..-=-+|++.|+=+.++.++..+. ....|..+..+ +..|+.....|++-.
T Consensus 410 l~ivv~~F~icWlP~~i~~l~~~~~---~~~~~~~~~~~~~~L~y~NS~iNPiIY~ 462 (500)
T 2rh1_A 410 LGIIMGTFTLCWLPFFIVNIVHVIQ---DNLIRKEVYILLNWIGYVNSGFNPLIYC 462 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS---TTSSCHHHHHHHHHHHHHGGGTHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc---CCcccHHHHHHHHHHHHHHHhhcchhhh
Confidence 3334456778888877666655442 33456665543 356777777777754
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=13.29 E-value=93 Score=22.66 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 028933 138 GVGGIILFQGIALAASGFL 156 (201)
Q Consensus 138 glG~vIlveGi~LAASGfL 156 (201)
-+++|+++.||++..||..
T Consensus 22 ifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 3456888899999888743
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=12.82 E-value=56 Score=27.02 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH
Q 028933 126 MKNESAFLLAWLGVGGIILFQGIALAASGFLPEELD 161 (201)
Q Consensus 126 ~~nE~aFLLa~lglG~vIlveGi~LAASGfLPee~D 161 (201)
-++|+.+.+.++..+.+.++.|++++=--++|-.|+
T Consensus 93 y~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~ 128 (249)
T 4b4a_A 93 YSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALK 128 (249)
T ss_dssp SCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888999999887777777775
No 9
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=12.33 E-value=96 Score=24.61 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=10.8
Q ss_pred CCchHHHHHHHhhcccCCch
Q 028933 155 FLPEELDKLFVKYLYPTFTP 174 (201)
Q Consensus 155 fLPee~D~f~v~~LYPsFTP 174 (201)
|||.-||.+..++=.+.|+|
T Consensus 69 fl~~Tw~~~~~~lgl~~F~P 88 (158)
T 1am7_A 69 LLSRXXDAYRKQLGLKDFSP 88 (158)
T ss_dssp BCHHHHHHHHHHHTCCCCCH
T ss_pred hhHHHHHHHHHHcCCCCCCH
Confidence 55555555555555555555
No 10
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=11.31 E-value=76 Score=22.79 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=16.7
Q ss_pred ccccCCCCcccccccccHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHH
Q 028933 102 VVRRNPVEKLSVMSKEDEAKAKEMMKNESAFLLAWLGVGGIILF-QGIALA 151 (201)
Q Consensus 102 viRRap~~~p~~~~~~~~a~a~~q~~nE~aFLLa~lglG~vIlv-eGi~LA 151 (201)
-.|+.|+.++.+.+.+.. +.-+..|.|+-+.- |+..||. -|.+|+
T Consensus 14 ~~r~~~~~Ra~v~s~P~~---~~~s~~E~aigltv--~f~~~L~PagWVLs 59 (70)
T 2y69_M 14 PLRGWAVPKAHITAKPAK---TPTSPKEQAIGLSV--TFLSFLLPAGWVLY 59 (70)
T ss_dssp -----------CEECCCS---SCCCHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hhhccccccccccCCCCC---CCcCHHHHHHHHHH--HHHHHHhhHHHHHH
Confidence 468888888888886522 23556677664433 2222333 366554
Done!