Query 028933
Match_columns 201
No_of_seqs 22 out of 24
Neff 2.0
Searched_HMMs 13730
Date Mon Mar 25 07:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028933.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028933hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wdka1 a.100.1.3 (A:497-620) 20.0 60 0.0044 21.9 4.2 48 142-190 10-58 (124)
2 d1oedb_ f.36.1.1 (B:) Acetylch 17.1 28 0.0021 24.9 1.9 26 134-159 223-249 (250)
3 d1f0ya1 a.100.1.3 (A:204-302) 13.0 1.1E+02 0.0078 19.1 3.8 34 141-175 9-44 (99)
4 d1xmec1 f.23.9.1 (C:2-34) Bact 11.2 58 0.0042 19.2 1.7 13 132-144 18-30 (33)
5 d2f66c1 a.2.17.3 (C:142-206) V 8.5 63 0.0046 21.5 1.3 11 158-168 38-48 (65)
6 d1nekc_ f.21.2.2 (C:) Succinat 8.0 1.4E+02 0.0099 20.1 3.0 16 150-165 48-63 (129)
7 d1ykia1 d.90.1.1 (A:2-217) Oxy 7.7 2.4E+02 0.017 18.3 4.2 30 135-164 136-175 (216)
8 d1am7a_ d.2.1.4 (A:) Lambda ly 7.6 87 0.0063 22.7 1.9 22 154-175 68-89 (154)
9 d1kf6c_ f.21.2.2 (C:) Fumarate 7.3 1.5E+02 0.011 21.6 3.0 40 134-182 35-74 (130)
10 d1q59a_ f.1.4.1 (A:) Early ant 7.2 1.9E+02 0.014 21.9 3.8 37 100-136 26-69 (172)
No 1
>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=19.97 E-value=60 Score=21.87 Aligned_cols=48 Identities=15% Similarity=0.068 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHH-Hhhhhhhcceee
Q 028933 142 IILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGL-FFAGTVAYGVLK 190 (201)
Q Consensus 142 vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~l-Fl~~Ss~YGV~K 190 (201)
.++.|++.|-..|.-|+++|.-+.+.=+|. -|+-.. ++++-++|-|.+
T Consensus 10 ~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~-Gpf~l~D~vGLd~~~~v~~ 58 (124)
T d1wdka1 10 PYFGGFAKLVSAGVDFVRIDKVMEKFGWPM-GPAYLMDVVGIDTGHHGRD 58 (124)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHTCSS-CHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhccCCC-CHHHHHHhcchHHHHHHHH
Confidence 456677888778889999999887777772 443222 334444444443
No 2
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=17.14 E-value=28 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.089 Sum_probs=17.7
Q ss_pred HHHHHHH-HHHHHHHHHHHhcCCCchH
Q 028933 134 LAWLGVG-GIILFQGIALAASGFLPEE 159 (201)
Q Consensus 134 La~lglG-~vIlveGi~LAASGfLPee 159 (201)
+.|+++. ++|-..+|+|.|.=+.|+|
T Consensus 223 fl~lF~l~~vi~t~~i~l~ap~~~~~~ 249 (250)
T d1oedb_ 223 FLYVFFVICSIGTFSIFLDASHNVPPD 249 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCcC
Confidence 3454443 4455689999998888875
No 3
>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.96 E-value=1.1e+02 Score=19.11 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCC-CchHHHHHHHh-hcccCCchh
Q 028933 141 GIILFQGIALAASGF-LPEELDKLFVK-YLYPTFTPT 175 (201)
Q Consensus 141 ~vIlveGi~LAASGf-LPee~D~f~v~-~LYPsFTPt 175 (201)
+.++-|++.|...|+ -|+++|.-+.. +=+|. -|+
T Consensus 9 ~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~-Gpf 44 (99)
T d1f0ya1 9 VPYLMEAIRLYERGDASKEDIDTAMKLGAGYPM-GPF 44 (99)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSS-CHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCC-chH
Confidence 356678888888886 89999997654 55773 554
No 4
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=11.18 E-value=58 Score=19.16 Aligned_cols=13 Identities=38% Similarity=0.904 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 028933 132 FLLAWLGVGGIIL 144 (201)
Q Consensus 132 FLLa~lglG~vIl 144 (201)
.|.+|+|.-+|.|
T Consensus 18 ilvfw~gv~avf~ 30 (33)
T d1xmec1 18 ILVFWLGVYAVFF 30 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3456666544444
No 5
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.51 E-value=63 Score=21.48 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=9.3
Q ss_pred hHHHHHHHhhc
Q 028933 158 EELDKLFVKYL 168 (201)
Q Consensus 158 ee~D~f~v~~L 168 (201)
.++|.|+..||
T Consensus 38 ~elD~Fi~qYl 48 (65)
T d2f66c1 38 DDLDQFIKNYL 48 (65)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 57999999886
No 6
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=8.03 E-value=1.4e+02 Score=20.08 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=8.7
Q ss_pred HHhcCCCchHHHHHHH
Q 028933 150 LAASGFLPEELDKLFV 165 (201)
Q Consensus 150 LAASGfLPee~D~f~v 165 (201)
++.+..-||..+.+..
T Consensus 48 l~~~~~~~~~~~~~~~ 63 (129)
T d1nekc_ 48 LGTSLSSPEGFEQASA 63 (129)
T ss_dssp HHHHHHCHHHHHHHHH
T ss_pred HHHHhccchHHHHHHH
Confidence 3333344777777643
No 7
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, minor form, NfnB [TaxId: 562]}
Probab=7.74 E-value=2.4e+02 Score=18.34 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhc----------CCCchHHHHHH
Q 028933 135 AWLGVGGIILFQGIALAAS----------GFLPEELDKLF 164 (201)
Q Consensus 135 a~lglG~vIlveGi~LAAS----------GfLPee~D~f~ 164 (201)
.|..+.+-|.++-+.|||. ||-+++++..+
T Consensus 136 ~~~~~~~g~~~~~l~LaA~a~Glgt~~~~~~~~~~~~~~l 175 (216)
T d1ykia1 136 EWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEF 175 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHh
Confidence 4555556677777777764 77788888876
No 8
>d1am7a_ d.2.1.4 (A:) Lambda lysozyme {Bacteriophage lambda [TaxId: 10710]}
Probab=7.65 E-value=87 Score=22.72 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=13.4
Q ss_pred CCCchHHHHHHHhhcccCCchh
Q 028933 154 GFLPEELDKLFVKYLYPTFTPT 175 (201)
Q Consensus 154 GfLPee~D~f~v~~LYPsFTPt 175 (201)
=|||.-|+.+....-.+.|+|-
T Consensus 68 Qfl~~Tw~~~~~~~gl~~F~P~ 89 (154)
T d1am7a_ 68 QLLSRWWDAYRKQLGLKDFSPK 89 (154)
T ss_dssp TBCHHHHHHHHHHHTCCCCCHH
T ss_pred hccHHHHHHHHHhcCCCCCCHH
Confidence 3666666666665555666664
No 9
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=7.31 E-value=1.5e+02 Score=21.60 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhhcccCCchhHHHHhhh
Q 028933 134 LAWLGVGGIILFQGIALAASGFLPEELDKLFVKYLYPTFTPTVGLFFAG 182 (201)
Q Consensus 134 La~lglG~vIlveGi~LAASGfLPee~D~f~v~~LYPsFTPtv~lFl~~ 182 (201)
++|.+ ++|.-|+.-=.+| ||.|++|+-= | =.|.|+++=..
T Consensus 35 ~~~f~---lvLl~Gl~~L~~g--~~aw~~fv~f-l---qnP~vv~lnii 74 (130)
T d1kf6c_ 35 AVWFS---IELIFGLFALKNG--PEAWAGFVDF-L---QNPVIVIINLI 74 (130)
T ss_dssp HHHHH---HHHHHHHHHHHTH--HHHHHHHHHH-H---TSSHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHhcC--HHHHHHHHHH-H---hCcHHHHHHHH
Confidence 45533 6677776544455 8999998632 2 25666665433
No 10
>d1q59a_ f.1.4.1 (A:) Early antigen protein R {Epstein-Barr virus [TaxId: 10376]}
Probab=7.19 E-value=1.9e+02 Score=21.88 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=24.1
Q ss_pred CcccccCCCCcccccccccH-------HHHHHHhhhhHHHHHHH
Q 028933 100 ASVVRRNPVEKLSVMSKEDE-------AKAKEMMKNESAFLLAW 136 (201)
Q Consensus 100 ~~viRRap~~~p~~~~~~~~-------a~a~~q~~nE~aFLLa~ 136 (201)
-+|.|-+..|.|...+.+++ .-...-.+|+.+|+-+|
T Consensus 26 hpvLel~~re~P~~~sp~D~~vLr~h~lleqiI~~n~esf~~t~ 69 (172)
T d1q59a_ 26 HPVLELAARETPLRLSPEDTVVLRYHVLLEEIIERNSETFTETW 69 (172)
T ss_dssp CSTTSCSSCSSCCSCCSCCHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred chhHhhccccCCCcCCCCcchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34777788888888887773 12223456777777555
Done!