BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028937
         (201 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9XDH5|DPO3A_THEAQ DNA polymerase III subunit alpha OS=Thermus aquaticus GN=dnaE PE=1
           SV=1
          Length = 1220

 Score = 32.3 bits (72), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 71  PNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQ 124
           P   LP+GR +   +Y++ +   F+ L ++R P+++ +A  + V  ++GT+PP 
Sbjct: 296 PRFPLPEGRTEA--QYLRELT--FLGL-LRRYPDRITEAFYREVLRLLGTMPPH 344


>sp|Q6AX23|QSOX2_XENLA Sulfhydryl oxidase 2 OS=Xenopus laevis GN=qsox2 PE=2 SV=1
          Length = 661

 Score = 31.2 bits (69), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 44  GRLALRIQAYDSSKNESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAP 103
           G   + ++  D  K+ S     N +K P+       RD    YVK   P+F++  V++ P
Sbjct: 542 GNQEISLEFADPRKDLSEAATDNGNKEPHFTKKPQERD----YVKKQNPQFLDKLVQKKP 597

Query: 104 EQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMY 142
           E+ +D+     +  +      F  +  + +  +L  ++Y
Sbjct: 598 EKSLDSEAAESSQSVS-----FLGIGFSNIDMSLCVILY 631


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,949,920
Number of Sequences: 539616
Number of extensions: 2516646
Number of successful extensions: 16141
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 15910
Number of HSP's gapped (non-prelim): 221
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)