Query 028937
Match_columns 201
No_of_seqs 113 out of 130
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 07:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n7s_A Vesicle-associated memb 31.2 31 0.0011 23.1 2.5 26 93-119 4-29 (63)
2 2do9_A NALP10, nacht-, LRR- an 30.2 80 0.0027 23.8 4.9 64 80-157 17-87 (115)
3 1xmk_A Double-stranded RNA-spe 29.2 31 0.0011 24.6 2.3 41 78-118 11-51 (79)
4 2r80_A Hemoglobin subunit alph 28.9 41 0.0014 25.0 3.0 69 81-149 64-140 (141)
5 3b5n_A Synaptobrevin homolog 1 28.9 37 0.0013 22.7 2.5 24 95-119 4-27 (61)
6 2w72_C Human hemoglobin A; iro 27.1 38 0.0013 24.9 2.5 69 81-149 64-140 (141)
7 1iv3_A 2-C-methyl-D-erythritol 27.1 42 0.0014 27.2 3.0 30 107-138 109-138 (152)
8 3re3_A 2-C-methyl-D-erythritol 26.7 43 0.0015 27.4 3.0 29 107-137 115-143 (162)
9 1a6m_A Myoglobin; heme protein 26.5 52 0.0018 24.6 3.3 69 81-149 70-146 (151)
10 3zym_A Phosphatidylinositol-bi 26.4 21 0.00072 31.0 1.1 32 87-119 274-305 (310)
11 1c4q_A Protein (shiga-like tox 26.3 28 0.00095 25.0 1.6 27 124-150 18-49 (69)
12 1lhs_A Myoglobin; oxygen stora 25.5 70 0.0024 23.9 3.8 70 81-150 70-147 (153)
13 2pmp_A 2-C-methyl-D-erythritol 24.7 49 0.0017 27.0 3.0 31 106-138 111-141 (160)
14 1t0a_A 2C-methyl-D-erythritol 24.6 49 0.0017 27.0 2.9 31 106-138 110-140 (159)
15 1l4a_A Synaptobrevin; snare, s 24.3 44 0.0015 23.5 2.3 27 93-120 15-41 (80)
16 1gx1_A 2-C-methyl-D-erythritol 23.9 51 0.0018 26.9 2.9 31 106-138 109-139 (160)
17 3hd7_A Vesicle-associated memb 23.7 52 0.0018 23.7 2.7 27 92-119 4-30 (91)
18 1gl2_A Endobrevin; membrane pr 23.3 50 0.0017 22.3 2.4 26 93-119 9-34 (65)
19 3f0d_A 2-C-methyl-D-erythritol 23.2 53 0.0018 27.5 3.0 30 107-138 132-161 (183)
20 1out_A Hemoglobin I; heme, oxy 23.2 49 0.0017 24.7 2.5 69 81-149 66-142 (143)
21 1xq5_A Hemoglobin alpha-1 chai 23.2 50 0.0017 24.5 2.6 69 81-149 66-142 (143)
22 1wmu_A Hemoglobin D alpha chai 22.8 42 0.0014 24.7 2.1 69 81-149 64-140 (141)
23 1spg_A Hemoglobin; carbon mono 22.4 59 0.002 24.2 2.9 70 81-150 67-144 (144)
24 3hjl_A Flagellar motor switch 22.2 67 0.0023 28.3 3.5 42 82-123 108-154 (329)
25 3mvc_A Globin protein 6; oxyge 22.1 1.1E+02 0.0039 23.3 4.5 48 103-150 105-153 (161)
26 1sfc_A VAMP 2, protein (synapt 21.9 59 0.002 23.8 2.7 27 93-120 30-56 (96)
27 1urq_A M-tomosyn isoform; tran 20.6 41 0.0014 23.2 1.5 27 92-119 3-29 (63)
No 1
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=31.16 E-value=31 Score=23.11 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=20.6
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHhhc
Q 028937 93 EFMELFVKRAPEQVVDAMRQTVTNMIG 119 (201)
Q Consensus 93 E~is~lsk~ASpeV~eaM~qtV~gLLG 119 (201)
+.+..+.... .||+++|..||..+|.
T Consensus 4 d~l~~v~~~l-~ev~~iM~~NI~~vl~ 29 (63)
T 1n7s_A 4 RRLQQTQAQV-DEVVDIMRVNVDKVLE 29 (63)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4556665555 7999999999999986
No 2
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.22 E-value=80 Score=23.83 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=42.7
Q ss_pred hhHHHHHHHhcCchHHHHHhccCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHH-------hHhHhhc
Q 028937 80 RDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVM-------MTGYMFK 152 (201)
Q Consensus 80 ~N~LleYLqsl~PE~is~lsk~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaM-------MTGYfLR 152 (201)
+..|+.||..++++-+..|-.--. + .. ...+|....+ .+++..||.||.+.- +|=-.|+
T Consensus 17 ~~~Ll~~Le~L~~eElkkFK~~L~-~--------~~--~~~Ip~~~le---~Ad~~dLa~lLv~~y~e~~A~~vt~~If~ 82 (115)
T 2do9_A 17 QEALLWALNDLEENSFKTLKFHLR-D--------VT--QFHLARGELE---SLSQVDLASKLISMYGAQEAVRVVSRSLL 82 (115)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH-H--------HH--CSSCCSSSTT---TCCTTHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHc-c--------Cc--CCCCChhhcc---cCCHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 468999999999999988754321 1 11 5666766654 359999999997643 3444455
Q ss_pred hhHHH
Q 028937 153 NAQYR 157 (201)
Q Consensus 153 NAEqR 157 (201)
.+-++
T Consensus 83 ~mn~~ 87 (115)
T 2do9_A 83 AMNLM 87 (115)
T ss_dssp HHTCH
T ss_pred HcCHH
Confidence 55444
No 3
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=29.22 E-value=31 Score=24.58 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=33.0
Q ss_pred CchhHHHHHHHhcCchHHHHHhccCCHHHHHHHHHHHHHhh
Q 028937 78 GRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMI 118 (201)
Q Consensus 78 ~~~N~LleYLqsl~PE~is~lsk~ASpeV~eaM~qtV~gLL 118 (201)
+.+..+++||+...|....++++.-.-...-++++++..|-
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le 51 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME 51 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34678999999999999999999776665547888888764
No 4
>2r80_A Hemoglobin subunit alpha-A; oxygen tranport/storage, heme, iron, metal-binding, oxygen transport, transport, oxygen binding; HET: HEM; 1.44A {Columba livia} PDB: 3mju_A* 3dhr_A* 3mjp_A* 1faw_A* 3eok_A* 3k8b_A* 2qmb_A* 3fs4_A* 3a59_A* 1a4f_A* 1hv4_A* 2zfb_A* 1c40_A* 3at5_A* 3at6_A*
Probab=28.88 E-value=41 Score=24.98 Aligned_cols=69 Identities=10% Similarity=0.175 Sum_probs=52.8
Q ss_pred hHHHHHHHhcCc--hHHHHHh------ccCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhH
Q 028937 81 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (201)
Q Consensus 81 N~LleYLqsl~P--E~is~ls------k~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGY 149 (201)
+.|-++++.++- ..+.+++ ....|+=.+++.+.+...|+..-++.|...+...++.+-..++.+|..+|
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~va~~l~~~y 140 (141)
T 2r80_A 64 EALVEAANHIDDIAGALSKLSDLHAQKLRVDPVNFKLLGHCFLVVVAVHFPSLLTPEVHASLDKFVLAVGTVLTAKY 140 (141)
T ss_dssp HHHHHHHHTTTCHHHHTHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 567777877764 5555665 34667778888877777777655567888888889999999999999998
No 5
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=28.87 E-value=37 Score=22.69 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=18.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhc
Q 028937 95 MELFVKRAPEQVVDAMRQTVTNMIG 119 (201)
Q Consensus 95 is~lsk~ASpeV~eaM~qtV~gLLG 119 (201)
+..+.... .||+++|..||..+|.
T Consensus 4 l~~vq~~l-~evk~iM~~NI~~vl~ 27 (61)
T 3b5n_A 4 TAELQAEI-DDTVGIMRDNINKVAE 27 (61)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 34444444 7899999999999886
No 6
>2w72_C Human hemoglobin A; iron, heme, glycation, transport, acetylation, phosphoprotein, packing defects, disease mutation, distal site point mutation; HET: HEM SO4; 1.07A {Homo sapiens} PDB: 1j7s_A* 1qi8_A* 1j7y_A* 1o1i_A* 2w72_A* 1bzz_A* 1c7b_A* 1j7w_A* 1o1k_A* 1o1o_A* 1y0c_A* 1ydz_A* 3ia3_B* 1ird_A* 1a00_A* 1a0u_A* 1a0z_A* 1a3n_A* 1a9w_A* 1b86_A* ...
Probab=27.12 E-value=38 Score=24.89 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=48.8
Q ss_pred hHHHHHHHhcCc--hHHHHHh------ccCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhH
Q 028937 81 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (201)
Q Consensus 81 N~LleYLqsl~P--E~is~ls------k~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGY 149 (201)
+.|..+++.++- +.+.+++ ....|+=.+++.+.+...|...-++.|...+...++.+-..++.+|..||
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~~~~~~i~~~l~~~y 140 (141)
T 2w72_C 64 DALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY 140 (141)
T ss_dssp HHHHHHHHTTTSHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666666653 3555555 35567777777777776666654466777777889999999999999998
No 7
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=27.07 E-value=42 Score=27.24 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEEecHHhHH
Q 028937 107 VDAMRQTVTNMIGTLPPQFFAVTVTTVAENLA 138 (201)
Q Consensus 107 ~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LA 138 (201)
.+.|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 109 ~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~LG 138 (152)
T 1iv3_A 109 RKALVDSLSRLMR-LPQDRIGLTFKTS-EGLA 138 (152)
T ss_dssp HHHHHHHHHHHHT-CCGGGEEEEEECC-TTSS
T ss_pred HHHHHHHHHHHhC-CCCceEEEEEecC-CCCC
Confidence 6899999999997 5777777777654 5443
No 8
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=26.75 E-value=43 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEEecHHhH
Q 028937 107 VDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 137 (201)
Q Consensus 107 ~eaM~qtV~gLLG~LP~~~F~VtItTsrE~L 137 (201)
.++|+++|..+|| +|.++.+|+.||+ |.|
T Consensus 115 ~~~m~~~la~~L~-~~~~~V~vKAtT~-E~L 143 (162)
T 3re3_A 115 IEKMRACLANILE-IQISQINIKATTT-ERL 143 (162)
T ss_dssp HHHHHHHHHHHHT-SCGGGEEEEEECC-SSC
T ss_pred HHHHHHHHHHHHC-CCCceEEEEEecC-CCc
Confidence 7899999999998 5777888777754 444
No 9
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=26.45 E-value=52 Score=24.60 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=52.1
Q ss_pred hHHHHHHHhcCc--hHHHHHhc------cCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhH
Q 028937 81 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (201)
Q Consensus 81 N~LleYLqsl~P--E~is~lsk------~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGY 149 (201)
+.|-++++.++- ..+.++++ ...|+=.+++.+.+...|+..-++.|...+...++.+-..++.+|..+|
T Consensus 70 ~al~~~v~~ld~~~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~v~~~l~~~y 146 (151)
T 1a6m_A 70 TALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKY 146 (151)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777753 56666663 4567777777777777776655566777778889999999999999999
No 10
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=26.36 E-value=21 Score=31.00 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=19.0
Q ss_pred HHhcCchHHHHHhccCCHHHHHHHHHHHHHhhc
Q 028937 87 VKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIG 119 (201)
Q Consensus 87 Lqsl~PE~is~lsk~ASpeV~eaM~qtV~gLLG 119 (201)
|+..+|+.+.++.+.. .||+++|++||..+|.
T Consensus 274 L~~~p~d~l~~lq~~i-~ev~~im~~ni~~vl~ 305 (310)
T 3zym_A 274 SGSGHMDRVRNLQSEV-EGVKNIMTQNVERILA 305 (310)
T ss_dssp ----------CHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHH-HHHHHHHHHhHHHHHh
Confidence 4455667777777766 8999999999998874
No 11
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=26.31 E-value=28 Score=25.02 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCcceEE-----EecHHhHHHHHHHHHhHhHh
Q 028937 124 QFFAVTV-----TTVAENLAQLMYSVMMTGYM 150 (201)
Q Consensus 124 ~~F~VtI-----tTsrE~LArLLaSaMMTGYf 150 (201)
+.|.|.+ -|+|-||--||.|+++||-.
T Consensus 18 ~tftvkv~gkeywt~rwnlqpllqsaqltgmt 49 (69)
T 1c4q_A 18 DTFTVKVGDKELATNRANLQSLLLSAQITGMT 49 (69)
T ss_dssp SCEEEEETTEEEEECCTTHHHHHHHHHHHTCE
T ss_pred ceEEEEecCeeeeecccchhhHHhhceecceE
Confidence 3455544 49999999999999999964
No 12
>1lhs_A Myoglobin; oxygen storage; HET: HEM; 2.00A {Caretta caretta} SCOP: a.1.1.2 PDB: 1lht_A*
Probab=25.48 E-value=70 Score=23.94 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=53.6
Q ss_pred hHHHHHHHhcCc--hHHHHHhc------cCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 028937 81 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (201)
Q Consensus 81 N~LleYLqsl~P--E~is~lsk------~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGYf 150 (201)
+.|-++++.++- ..+.++++ ...|+=.+++.+.+...|...=++.|...+...++.+-..++.+|..+|-
T Consensus 70 ~al~~~v~~ldd~~~~l~~L~~~H~~k~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 147 (153)
T 1lhs_A 70 TALGRILKQKNNHEQELKPLAESHATKHKIPVKYLEFICEIIVKVIAEKHPSDFGADSQAAMKKALELFRNDMASKYK 147 (153)
T ss_dssp HHHHHHHTTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777877763 56666764 56677788888887777776555668877888899999999999998883
No 13
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=24.66 E-value=49 Score=27.05 Aligned_cols=31 Identities=16% Similarity=0.411 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEEecHHhHH
Q 028937 106 VVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLA 138 (201)
Q Consensus 106 V~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LA 138 (201)
-.++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 111 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~LG 141 (160)
T 2pmp_A 111 HKETIRSNLSKLLG-ADPSVVNLKAKTH-EKVD 141 (160)
T ss_dssp GHHHHHHHHHHHHT-CCGGGEEEEEECC-TTCH
T ss_pred HHHHHHHHHHHHHC-CCcceEEEEEecC-CCCC
Confidence 46899999999997 5777777777654 5443
No 14
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=24.60 E-value=49 Score=27.04 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEEecHHhHH
Q 028937 106 VVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLA 138 (201)
Q Consensus 106 V~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LA 138 (201)
-.++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 110 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~LG 140 (159)
T 1t0a_A 110 HIEDMRQVLAADLN-ADVADINVKATTT-EKLG 140 (159)
T ss_dssp GHHHHHHHHHHHTT-CCGGGEEEEEECC-TTCH
T ss_pred HHHHHHHHHHHHhC-CCCceEEEEEecC-CCCC
Confidence 36899999999997 5777777777754 4443
No 15
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=24.32 E-value=44 Score=23.52 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=20.4
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 028937 93 EFMELFVKRAPEQVVDAMRQTVTNMIGT 120 (201)
Q Consensus 93 E~is~lsk~ASpeV~eaM~qtV~gLLG~ 120 (201)
+.+.++.... .||+++|..||..+|..
T Consensus 15 d~l~~vq~el-~ev~~iM~~NI~~vLeR 41 (80)
T 1l4a_A 15 KRLQQTQAQV-EEVVDIMRVNVDKVLER 41 (80)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 3455555545 79999999999999874
No 16
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=23.87 E-value=51 Score=26.93 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCcceEEEecHHhHH
Q 028937 106 VVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLA 138 (201)
Q Consensus 106 V~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LA 138 (201)
-.++|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 109 ~~~~m~~~ia~~L~-~~~~~V~vKAtT~-E~LG 139 (160)
T 1gx1_A 109 HIPQMRVFIAEDLG-CHMDDVNVKATTT-EKLG 139 (160)
T ss_dssp GHHHHHHHHHHHTT-CCGGGEEEEEECC-TTCH
T ss_pred HHHHHHHHHHHHhC-CCCceEEEEEccC-CCCC
Confidence 45899999999997 5777777777754 4443
No 17
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=23.68 E-value=52 Score=23.73 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=21.8
Q ss_pred chHHHHHhccCCHHHHHHHHHHHHHhhc
Q 028937 92 PEFMELFVKRAPEQVVDAMRQTVTNMIG 119 (201)
Q Consensus 92 PE~is~lsk~ASpeV~eaM~qtV~gLLG 119 (201)
.+.++++.+.. .||+++|++||..+|.
T Consensus 4 ~d~l~~vq~ev-~evk~iM~~NI~kvL~ 30 (91)
T 3hd7_A 4 MRRLQQTQAQV-DEVVDIMRVNVDKVLE 30 (91)
T ss_dssp THHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45566666666 8999999999999986
No 18
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.26 E-value=50 Score=22.35 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=19.7
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHhhc
Q 028937 93 EFMELFVKRAPEQVVDAMRQTVTNMIG 119 (201)
Q Consensus 93 E~is~lsk~ASpeV~eaM~qtV~gLLG 119 (201)
+.+..+.... .||+++|..||..+|.
T Consensus 9 d~l~~vq~~l-~evk~iM~~NI~~vL~ 34 (65)
T 1gl2_A 9 DRVRNLQSEV-EGVKNIMTQNVERILA 34 (65)
T ss_dssp -CHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4455555555 7999999999999886
No 19
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=23.24 E-value=53 Score=27.45 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCCCCCCcceEEEecHHhHH
Q 028937 107 VDAMRQTVTNMIGTLPPQFFAVTVTTVAENLA 138 (201)
Q Consensus 107 ~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LA 138 (201)
.+.|+++|..+|| +|.++.+|+.||+ |.|+
T Consensus 132 ~~~mr~~la~~L~-i~~~~VnVKATT~-E~LG 161 (183)
T 3f0d_A 132 IDAMRANIAADLD-LPLDRVNVKAKTN-EKLG 161 (183)
T ss_dssp HHHHHHHHHHHHT-CCGGGEEEEEECC-TTCH
T ss_pred HHHHHHHHHHHHC-CCcceEEEEEecC-CCCc
Confidence 7899999999998 5777777777654 4443
No 20
>1out_A Hemoglobin I; heme, oxygen transport, respiratory protein, erythrocyte; HET: HEM; 2.30A {Oncorhynchus mykiss} SCOP: a.1.1.2 PDB: 1ouu_A*
Probab=23.19 E-value=49 Score=24.67 Aligned_cols=69 Identities=10% Similarity=0.093 Sum_probs=52.1
Q ss_pred hHHHHHHHhcCc--hHHHHHh------ccCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhH
Q 028937 81 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (201)
Q Consensus 81 N~LleYLqsl~P--E~is~ls------k~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGY 149 (201)
+.|-++++.++- ..+++++ ....|+=.+++.+.+...|+..-++.|...+...++.+-..++.+|..+|
T Consensus 66 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 142 (143)
T 1out_A 66 GAIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVSAALADKY 142 (143)
T ss_dssp HHHHHHHHTTTCHHHHTHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 567788888874 4445554 35567777788877777777655567887788889999999999999988
No 21
>1xq5_A Hemoglobin alpha-1 chain; FISH hemoglobin, rapid oxidation, structural genomics, protein structure initiative, PSI, CESG; HET: HEM; 1.90A {Perca flavescens} SCOP: a.1.1.2 PDB: 3bj1_A* 3bj2_A* 3bj3_A* 3bcq_A*
Probab=23.18 E-value=50 Score=24.46 Aligned_cols=69 Identities=9% Similarity=0.141 Sum_probs=51.3
Q ss_pred hHHHHHHHhcCc--hHHHHHhc------cCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhH
Q 028937 81 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (201)
Q Consensus 81 N~LleYLqsl~P--E~is~lsk------~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGY 149 (201)
+.|-++++.++- ..++++++ ...|+=.+++.+.+...|+..-++.|...+...++.+-..++.+|..+|
T Consensus 66 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y 142 (143)
T 1xq5_A 66 GGIVDAVASIDDLNAGLLALSELHAFTLRVDPANFKILSHCILVLLAVKFPKDFTPEVHISYDKFFSALARALAEKY 142 (143)
T ss_dssp HHHHHHHHTTTCHHHHTHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 667777877763 45555653 5666777777777777666654566777778889999999999999998
No 22
>1wmu_A Hemoglobin D alpha chain; hemoglobin D, reptilia, the aldabra giant tortoise, geochelone gigantea, oxygen storage/transport complex; HET: HEM; 1.65A {Dipsochelys dussumieri} SCOP: a.1.1.2 PDB: 1v75_A* 2z6n_A* 1hbr_A*
Probab=22.78 E-value=42 Score=24.70 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=47.3
Q ss_pred hHHHHHHHhcCc--hHHHHHh------ccCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhH
Q 028937 81 DILLEYVKNVQP--EFMELFV------KRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGY 149 (201)
Q Consensus 81 N~LleYLqsl~P--E~is~ls------k~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGY 149 (201)
+.|-++++.++- +.+.+++ ....|+-.+++.+.+...|+..-++.|...+...++.+-..++.+|..||
T Consensus 64 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~~~~~~v~~~l~~~y 140 (141)
T 1wmu_A 64 GALGDAVKHIDNLSATLSELSNLHAYNLRVDPVNFKLLSHCFQVVLGAHLGREYTPQVQVAYDKFLAAVSAVLAEKY 140 (141)
T ss_dssp HHHHHHHHTTTSHHHHTHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 556666766653 4445554 35566666666666665555543456777777889999999999999998
No 23
>1spg_A Hemoglobin; carbon monoxide, R-state, teleost FISH effect, oxygen transport; HET: HEM; 1.95A {Leiostomus xanthurus} SCOP: a.1.1.2
Probab=22.43 E-value=59 Score=24.24 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=53.2
Q ss_pred hHHHHHHHhcCc--hHHHHHhc------cCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 028937 81 DILLEYVKNVQP--EFMELFVK------RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (201)
Q Consensus 81 N~LleYLqsl~P--E~is~lsk------~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGYf 150 (201)
+.|-++++.++- ..++++++ ...|+=.+++.+.+...|+..-++.|...+...++.+-..++.+|..+|.
T Consensus 67 ~al~~~v~~ld~l~~~l~~L~~~H~~~~~V~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 144 (144)
T 1spg_A 67 AAVGKAVKSIDNLVGGLSQLSELHAFKLRVDPANFKILAHNIILVISMYFPGDFTPEVHLSVDKFLACLALALSEKYR 144 (144)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 567788888874 45555553 46778888888888777776555678888888999999999999999883
No 24
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=22.16 E-value=67 Score=28.31 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=33.5
Q ss_pred HHHHHHHhcCchHHHHHhccCCHHHHHHHHHH-----HHHhhcCCCC
Q 028937 82 ILLEYVKNVQPEFMELFVKRAPEQVVDAMRQT-----VTNMIGTLPP 123 (201)
Q Consensus 82 ~LleYLqsl~PE~is~lsk~ASpeV~eaM~qt-----V~gLLG~LP~ 123 (201)
.-|++|+.++|+.+..|-+.-+|++..+|=.+ =..+|+.||+
T Consensus 108 ~~~~~L~~~dp~~la~~i~~EhPQtiAlILs~L~p~~AA~vL~~Lp~ 154 (329)
T 3hjl_A 108 KILKEIEKVDSRILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPE 154 (329)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCH
T ss_pred CHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCH
Confidence 45999999999999999999999988877433 3456666665
No 25
>3mvc_A Globin protein 6; oxygen sensor, heme-binding protein, C. elegans, OXY transport, electron transport; HET: HEM; 1.40A {Caenorhabditis elegans}
Probab=22.14 E-value=1.1e+02 Score=23.26 Aligned_cols=48 Identities=6% Similarity=0.047 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHH-hhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 028937 103 PEQVVDAMRQTVTN-MIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (201)
Q Consensus 103 SpeV~eaM~qtV~g-LLG~LP~~~F~VtItTsrE~LArLLaSaMMTGYf 150 (201)
.|+-.+++...+.. ++..-....|...+...+..+-..++..|..||-
T Consensus 105 ~~~~f~~~g~all~~~l~~~~~~~~t~e~~~AW~~~~~~i~~~m~~gy~ 153 (161)
T 3mvc_A 105 HAHLLDQFATAMIERTLEWGEKKDRTETTQRGWTKIVLFVTEQLKEGFQ 153 (161)
T ss_dssp CTHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888887765 4543334556666778899999999999999996
No 26
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.93 E-value=59 Score=23.84 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=21.4
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHhhcC
Q 028937 93 EFMELFVKRAPEQVVDAMRQTVTNMIGT 120 (201)
Q Consensus 93 E~is~lsk~ASpeV~eaM~qtV~gLLG~ 120 (201)
+.+.++.... .||+++|.+||..+|..
T Consensus 30 d~l~~vq~el-deVk~IM~~NI~kvLeR 56 (96)
T 1sfc_A 30 RRLQQTQAQV-DEVVDIMRVNVDKVLER 56 (96)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 4555666655 89999999999999875
No 27
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.60 E-value=41 Score=23.21 Aligned_cols=27 Identities=15% Similarity=-0.013 Sum_probs=18.1
Q ss_pred chHHHHHhccCCHHHHHHHHHHHHHhhc
Q 028937 92 PEFMELFVKRAPEQVVDAMRQTVTNMIG 119 (201)
Q Consensus 92 PE~is~lsk~ASpeV~eaM~qtV~gLLG 119 (201)
|..++.+...+ .+|+.+|.++|..++.
T Consensus 3 ~~~i~~v~~qv-~ev~~iM~~ni~kvlE 29 (63)
T 1urq_A 3 HGGIEGVKGAA-SGVVGELARARLALDE 29 (63)
T ss_dssp ---CHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44445555444 7899999999998874
Done!