Query 028937
Match_columns 201
No_of_seqs 113 out of 130
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 07:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028937.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028937hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wmub_ a.1.1.2 (B:) Hemoglobi 50.3 3 0.00022 29.8 1.6 55 96-150 92-146 (146)
2 d1fx0a1 a.69.1.1 (A:373-501) F 37.5 25 0.0018 25.0 5.0 40 80-119 86-127 (129)
3 d2jdia1 a.69.1.1 (A:380-510) F 36.4 27 0.002 24.7 5.0 39 81-119 87-127 (131)
4 d2dn3b1 a.1.1.2 (B:2-146) Hemo 34.9 6.2 0.00045 28.0 1.2 50 101-150 96-145 (145)
5 d1jdla_ a.3.1.1 (A:) Cytochrom 29.5 11 0.00079 26.3 1.7 16 77-92 103-118 (118)
6 d1w23a_ c.67.1.4 (A:) Phosphos 29.4 86 0.0063 23.1 7.2 38 103-142 43-83 (360)
7 d1lkvx_ a.118.14.1 (X:) FliG { 25.3 30 0.0022 24.7 3.6 28 82-109 4-32 (213)
8 d1c52a_ a.3.1.1 (A:) Cytochrom 23.5 30 0.0022 23.4 3.1 42 71-112 71-126 (131)
9 d1c4qa_ b.40.2.1 (A:) Verotoxi 23.4 16 0.0012 24.6 1.6 27 124-150 18-49 (69)
10 d1cota_ a.3.1.1 (A:) Cytochrom 23.3 17 0.0013 24.7 1.8 17 77-93 104-120 (121)
11 d1v72a1 c.67.1.1 (A:6-350) Phe 22.1 12 0.00087 26.7 0.8 16 105-120 38-53 (345)
No 1
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise (Geochelone gigantea) [TaxId: 167804]}
Probab=50.26 E-value=3 Score=29.76 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=45.3
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 028937 96 ELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (201)
Q Consensus 96 s~lsk~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGYf 150 (201)
........|+-.+.|.+.+-..|...-++.|...+..-++++-..++.+|..||.
T Consensus 92 ~h~~~~v~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 146 (146)
T d1wmub_ 92 HCEKLHVDPENFKLLGNILIIVLATHFPKEFTPASQAAWTKLVNAVAHALALGYH 146 (146)
T ss_dssp HHHTSCCCTHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCccCCCCHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445677888888888888777776666778888888999999999999999995
No 2
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=37.49 E-value=25 Score=25.00 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=33.2
Q ss_pred hhHHHHHHHhcCchHHHHHhcc--CCHHHHHHHHHHHHHhhc
Q 028937 80 RDILLEYVKNVQPEFMELFVKR--APEQVVDAMRQTVTNMIG 119 (201)
Q Consensus 80 ~N~LleYLqsl~PE~is~lsk~--ASpeV~eaM~qtV~gLLG 119 (201)
.+.|++|+++-.|+++..+.+. -+.+..+.++..|...+.
T Consensus 86 e~~ll~~l~~~~~~il~~I~~~~~ltde~~~~L~~~i~~f~~ 127 (129)
T d1fx0a1 86 LVELRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQEQME 127 (129)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3579999999999999999884 578888888888876553
No 3
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain 3 {Cow (Bos taurus) [TaxId: 9913]}
Probab=36.37 E-value=27 Score=24.73 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=32.4
Q ss_pred hHHHHHHHhcCchHHHHHhc--cCCHHHHHHHHHHHHHhhc
Q 028937 81 DILLEYVKNVQPEFMELFVK--RAPEQVVDAMRQTVTNMIG 119 (201)
Q Consensus 81 N~LleYLqsl~PE~is~lsk--~ASpeV~eaM~qtV~gLLG 119 (201)
+.|++|+++-.|+++..+.+ .-+++..+.++..|.....
T Consensus 87 ~~ll~~l~~~~~~~l~~I~~~~~l~de~~~~L~~ai~~f~~ 127 (131)
T d2jdia1 87 NAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLA 127 (131)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999975 4568888888888876553
No 4
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.95 E-value=6.2 Score=28.01 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCcceEEEecHHhHHHHHHHHHhHhHh
Q 028937 101 RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYM 150 (201)
Q Consensus 101 ~ASpeV~eaM~qtV~gLLG~LP~~~F~VtItTsrE~LArLLaSaMMTGYf 150 (201)
...|+-.+.|.+.+...|...-.+.|...+..-++++-..++.+|..||.
T Consensus 96 gv~~~~f~~~~~~ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~ 145 (145)
T d2dn3b1 96 HVDPENFRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAGVANALAHKYH 145 (145)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred CCChhHHHHHHHHHHHHHHHHcCccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 56788888888888777777666778777888999999999999999994
No 5
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=29.49 E-value=11 Score=26.28 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=13.5
Q ss_pred CCchhHHHHHHHhcCc
Q 028937 77 KGRRDILLEYVKNVQP 92 (201)
Q Consensus 77 ~~~~N~LleYLqsl~P 92 (201)
++++.+|+.||++++|
T Consensus 103 ~~d~~dliaYL~sl~p 118 (118)
T d1jdla_ 103 EQERKDVVAYLKQFSP 118 (118)
T ss_dssp HHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 3567789999999998
No 6
>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}
Probab=29.41 E-value=86 Score=23.15 Aligned_cols=38 Identities=8% Similarity=0.181 Sum_probs=22.5
Q ss_pred CHHHHHH---HHHHHHHhhcCCCCCCcceEEEecHHhHHHHHH
Q 028937 103 PEQVVDA---MRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMY 142 (201)
Q Consensus 103 SpeV~ea---M~qtV~gLLG~LP~~~F~VtItTsrE~LArLLa 142 (201)
|++..++ ++..|..++|. | +...+-++.....++..++
T Consensus 43 s~~~~~~~~~~r~~l~~l~~~-~-~~~~i~~~~gt~~~~~~~~ 83 (360)
T d1w23a_ 43 SQSYEEVHEQAQNLLRELLQI-P-NDYQILFLQGGASLQFTML 83 (360)
T ss_dssp SHHHHHHHHHHHHHHHHHHTC-C-TTEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCC-C-CCCEEEEeCCcHHHHHHHH
Confidence 5665555 56777888887 4 4444555555555554433
No 7
>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=25.26 E-value=30 Score=24.73 Aligned_cols=28 Identities=7% Similarity=0.256 Sum_probs=20.6
Q ss_pred HHHHHHHhcCchHHHHHhccCCH-HHHHH
Q 028937 82 ILLEYVKNVQPEFMELFVKRAPE-QVVDA 109 (201)
Q Consensus 82 ~LleYLqsl~PE~is~lsk~ASp-eV~ea 109 (201)
.|++||+..+|++++.+-..-++ ++.++
T Consensus 4 ~la~~l~~e~p~~~A~iL~~L~~d~aa~v 32 (213)
T d1lkvx_ 4 QLVNFLQSEHPQTIAVVLSYLDPPVAAQI 32 (213)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHH
Confidence 68999999999999988554444 44443
No 8
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}
Probab=23.50 E-value=30 Score=23.40 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=28.6
Q ss_pred CCCCCCCCchhHHHHHHHhc-------------CchHHHHH-hccCCHHHHHHHHH
Q 028937 71 PNGALPKGRRDILLEYVKNV-------------QPEFMELF-VKRAPEQVVDAMRQ 112 (201)
Q Consensus 71 ~~~~~~~~~~N~LleYLqsl-------------~PE~is~l-sk~ASpeV~eaM~q 112 (201)
..+.+..++-..++.||++. +|+.|.++ +++.+|.-..+.++
T Consensus 71 ~~~~LsD~eI~av~~YIr~~~gn~~~~~~~~~~t~~~v~~~R~~~~~~~~~~~~r~ 126 (131)
T d1c52a_ 71 SFAQLKDEEIAAVLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERK 126 (131)
T ss_dssp CCTTSCHHHHHHHHHHHHHTTSTGGGSTTCCCCCHHHHHHHTTSCCCHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHcCCCCHHHHHHHHH
Confidence 34457777888999999863 45677777 66666666555554
No 9
>d1c4qa_ b.40.2.1 (A:) Verotoxin-1/shiga-toxin, B-pentamer {Escherichia coli [TaxId: 562]}
Probab=23.43 E-value=16 Score=24.57 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=21.9
Q ss_pred CCcceEE-----EecHHhHHHHHHHHHhHhHh
Q 028937 124 QFFAVTV-----TTVAENLAQLMYSVMMTGYM 150 (201)
Q Consensus 124 ~~F~VtI-----tTsrE~LArLLaSaMMTGYf 150 (201)
+.|.|.| -|+|-||--||.|+++||-.
T Consensus 18 dtftvkv~gkeywtnrwnlqpllqsaqltgmt 49 (69)
T d1c4qa_ 18 DTFTVKVGDKELATNRANLQSLLLSAQITGMT 49 (69)
T ss_dssp SCEEEEETTEEEEECCTTHHHHHHHHHHHTCE
T ss_pred CceEEeecCceehhcccchhhHHhhceecceE
Confidence 4565554 49999999999999999964
No 10
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}
Probab=23.30 E-value=17 Score=24.71 Aligned_cols=17 Identities=6% Similarity=0.288 Sum_probs=13.8
Q ss_pred CCchhHHHHHHHhcCch
Q 028937 77 KGRRDILLEYVKNVQPE 93 (201)
Q Consensus 77 ~~~~N~LleYLqsl~PE 93 (201)
.+.+.+|+.||++++||
T Consensus 104 ~~d~~dliAYLks~~~~ 120 (121)
T d1cota_ 104 GKNQADVVAFLAQNSPD 120 (121)
T ss_dssp CSCHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 34467899999999987
No 11
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}
Probab=22.12 E-value=12 Score=26.73 Aligned_cols=16 Identities=0% Similarity=0.250 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhcC
Q 028937 105 QVVDAMRQTVTNMIGT 120 (201)
Q Consensus 105 eV~eaM~qtV~gLLG~ 120 (201)
+..+..++.+..++|.
T Consensus 38 ~~~~~l~~~la~~~g~ 53 (345)
T d1v72a1 38 ELTAQVKRKFCEIFER 53 (345)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3445556677777773
Done!