Query 028938
Match_columns 201
No_of_seqs 164 out of 1278
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697 Protein phosphatase 1B 100.0 6.8E-33 1.5E-37 222.9 12.3 154 28-182 18-184 (379)
2 PLN03145 Protein phosphatase 2 100.0 1.5E-31 3.2E-36 229.1 18.4 152 30-182 63-225 (365)
3 KOG0698 Serine/threonine prote 100.0 4.5E-31 9.8E-36 224.1 20.2 159 32-192 40-210 (330)
4 PF00481 PP2C: Protein phospha 100.0 5.9E-30 1.3E-34 210.0 13.9 149 33-182 1-159 (254)
5 PTZ00224 protein phosphatase 2 100.0 1.7E-28 3.7E-33 211.0 19.6 145 28-182 18-164 (381)
6 COG0631 PTC1 Serine/threonine 100.0 6.7E-28 1.5E-32 198.7 16.8 143 29-172 5-157 (262)
7 PRK14559 putative protein seri 99.9 6.3E-25 1.4E-29 198.8 16.5 140 31-170 374-531 (645)
8 cd00143 PP2Cc Serine/threonine 99.9 6.5E-24 1.4E-28 172.4 17.7 146 33-180 2-156 (254)
9 smart00332 PP2Cc Serine/threon 99.9 2E-23 4.4E-28 170.0 20.3 148 31-181 5-160 (255)
10 KOG0699 Serine/threonine prote 99.9 1.6E-24 3.4E-29 180.2 12.4 65 122-187 327-393 (542)
11 KOG0700 Protein phosphatase 2C 99.9 2.2E-21 4.7E-26 163.9 13.6 129 45-176 83-260 (390)
12 KOG1323 Serine/threonine phosp 99.7 2.5E-17 5.4E-22 136.3 12.0 136 59-195 140-317 (493)
13 PF13672 PP2C_2: Protein phosp 99.6 5.4E-16 1.2E-20 123.5 7.6 125 37-166 3-139 (212)
14 KOG1379 Serine/threonine prote 99.2 1.1E-10 2.4E-15 96.6 11.6 109 46-164 90-208 (330)
15 smart00331 PP2C_SIG Sigma fact 99.2 8.9E-10 1.9E-14 86.3 15.8 123 32-166 4-129 (193)
16 KOG0618 Serine/threonine phosp 98.8 8.6E-09 1.9E-13 95.7 7.4 154 31-190 521-684 (1081)
17 TIGR02865 spore_II_E stage II 98.4 5.8E-06 1.2E-10 77.8 14.2 112 45-166 565-678 (764)
18 PF07228 SpoIIE: Stage II spor 97.8 0.00057 1.2E-08 53.1 12.7 99 62-166 3-105 (193)
19 PRK10693 response regulator of 61.9 94 0.002 25.9 11.4 97 64-166 164-266 (303)
20 cd03703 aeIF5B_II aeIF5B_II: T 38.7 86 0.0019 22.4 4.7 40 123-166 12-55 (110)
21 PF01383 CpcD: CpcD/allophycoc 33.5 38 0.00083 21.0 2.0 16 167-182 37-52 (56)
22 KOG3948 Mediator of U snRNA nu 31.2 56 0.0012 27.9 3.2 32 167-200 231-262 (369)
23 PF05785 CNF1: Rho-activating 31.1 55 0.0012 27.4 3.1 23 123-147 131-153 (281)
24 PF06574 FAD_syn: FAD syntheta 26.1 17 0.00037 27.6 -0.7 17 61-77 6-23 (157)
25 KOG3403 Translation initiation 25.1 98 0.0021 22.6 3.1 41 137-177 66-107 (145)
26 TIGR02276 beta_rpt_yvtn 40-res 24.1 1.1E+02 0.0023 16.6 2.7 18 136-153 3-20 (42)
27 PLN02388 phosphopantetheine ad 20.9 41 0.00089 26.2 0.6 17 61-77 20-37 (177)
No 1
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-33 Score=222.90 Aligned_cols=154 Identities=28% Similarity=0.448 Sum_probs=132.8
Q ss_pred CCCceEEEEEeeecCCCCCCCccEEEEEeec-CCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCC--------C
Q 028938 28 NVGLVKFGFSLVKGKANHPMEDYHVAKFVQL-QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV--------D 98 (201)
Q Consensus 28 ~~~~~~~~~~s~~G~rr~~neD~~~~~~~~~-~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~--------~ 98 (201)
..+.+.|+..|+||.| -+|||++.+..... +-.+|.||||||||.|.++|.+++.+|++++.++.++.. +
T Consensus 18 ~GNglryg~SSMQGWR-~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~ 96 (379)
T KOG0697|consen 18 EGNGLRYGVSSMQGWR-VEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVEN 96 (379)
T ss_pred cCCceeeeeccccchh-hhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHH
Confidence 3568999999999998 89999997754333 347899999999999999999999999999998766543 6
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--CCCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeeeeCCCCCCC--hhHHHHHH
Q 028938 99 PQRSISKAYEKTDQAILSHSS--DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIE 174 (201)
Q Consensus 99 ~~~~l~~a~~~~~~~i~~~~~--~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~--~~E~~RI~ 174 (201)
.+..|+..|.++|+.+..... .....+|+|.+++++...++|++|+||||++++|+|.++.-|.||+| |.|++||+
T Consensus 97 ~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIq 176 (379)
T KOG0697|consen 97 VEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQ 176 (379)
T ss_pred HHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHh
Confidence 788999999999998876332 11233777777889999999999999999999999999999999999 99999999
Q ss_pred hCCCEEEc
Q 028938 175 DKGGFVSN 182 (201)
Q Consensus 175 ~~gG~v~~ 182 (201)
.|||.|..
T Consensus 177 nAGGSVMI 184 (379)
T KOG0697|consen 177 NAGGSVMI 184 (379)
T ss_pred cCCCeEEE
Confidence 99998873
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.98 E-value=1.5e-31 Score=229.06 Aligned_cols=152 Identities=32% Similarity=0.482 Sum_probs=128.5
Q ss_pred CceEEEEEeeecCCCCCCCccEEEEEeec--------CCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCCCHHH
Q 028938 30 GLVKFGFSLVKGKANHPMEDYHVAKFVQL--------QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQR 101 (201)
Q Consensus 30 ~~~~~~~~s~~G~rr~~neD~~~~~~~~~--------~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~ 101 (201)
..+.++..|++|. |+.|||++++..... ...+..||+|||||||..++++++.++++.+.+...+...+++
T Consensus 63 ~~~~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGS-RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccC-CCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 3568999999997 599999987643221 1234689999999999999999999999999876555556788
Q ss_pred HHHHHHHHHHHHHHhcCC-CCCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeeeeCCCCCCC--hhHHHHHHhCCC
Q 028938 102 SISKAYEKTDQAILSHSS-DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGG 178 (201)
Q Consensus 102 ~l~~a~~~~~~~i~~~~~-~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~--~~E~~RI~~~gG 178 (201)
+|+++|.++|+.|.+... .....+|||++++++.++++|+||+||||+|+++++++.+||+||+| +.|++||+++||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 999999999999976432 23345888888889999999999999999999999999999999999 889999999999
Q ss_pred EEEc
Q 028938 179 FVSN 182 (201)
Q Consensus 179 ~v~~ 182 (201)
+|..
T Consensus 222 ~v~~ 225 (365)
T PLN03145 222 YVYD 225 (365)
T ss_pred ceec
Confidence 9853
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.98 E-value=4.5e-31 Score=224.13 Aligned_cols=159 Identities=42% Similarity=0.619 Sum_probs=131.6
Q ss_pred eEEEEEeeecCCCCCCCccEEEEEeec----CCC-ceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCCC---HHHHH
Q 028938 32 VKFGFSLVKGKANHPMEDYHVAKFVQL----QGH-ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVD---PQRSI 103 (201)
Q Consensus 32 ~~~~~~s~~G~rr~~neD~~~~~~~~~----~~~-~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~---~~~~l 103 (201)
...+..+.+|.+ ..|||++....... .+. +..||||||||||..+|+|+.++|+..+.++..+... .++++
T Consensus 40 ~~~~~~~~~~~r-~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~ 118 (330)
T KOG0698|consen 40 RLGSLLSIRGRR-RKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDAL 118 (330)
T ss_pred cceEEEecCCCC-CccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHH
Confidence 334555777776 78999987765432 233 5899999999999999999999999999988776653 78999
Q ss_pred HHHHH-HHHHHHHhcCCCCCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCC-eeeeCCCCCCC--hhHHHHHHhCCCE
Q 028938 104 SKAYE-KTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAG-VAVQMTTDHEP--NTERGSIEDKGGF 179 (201)
Q Consensus 104 ~~a~~-~~~~~i~~~~~~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g-~~~~LT~dH~~--~~E~~RI~~~gG~ 179 (201)
+++|. ++|..+.++.......|+||++++++.++++|+||+|||||+|++.+ .+++||.||+| +.|+.||+++||+
T Consensus 119 ~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~ 198 (330)
T KOG0698|consen 119 RRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGR 198 (330)
T ss_pred HHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCE
Confidence 99999 69999987633334566666666555566999999999999999765 89999999999 9999999999999
Q ss_pred EEccCCCcccccc
Q 028938 180 VSNMPGFHYRHGF 192 (201)
Q Consensus 180 v~~~~g~v~rv~~ 192 (201)
|..+.+ ++||+.
T Consensus 199 v~~~~~-~~Rv~G 210 (330)
T KOG0698|consen 199 VSNWGG-VWRVNG 210 (330)
T ss_pred EEEcCC-cceEec
Confidence 999888 888876
No 4
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.97 E-value=5.9e-30 Score=209.98 Aligned_cols=149 Identities=34% Similarity=0.536 Sum_probs=121.3
Q ss_pred EEEEEeeecCCCCCCCccEEEEEeec---CCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCC--CHHHHHHHHH
Q 028938 33 KFGFSLVKGKANHPMEDYHVAKFVQL---QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWV--DPQRSISKAY 107 (201)
Q Consensus 33 ~~~~~s~~G~rr~~neD~~~~~~~~~---~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~--~~~~~l~~a~ 107 (201)
.+++.+.+|.| ++|||++++..... ...+..+|+|||||||.++|++++.+++..+.+...... .+.++|..+|
T Consensus 1 ~~~~~~~~g~r-~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVR-KEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTS-SSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCC-CcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 37888999987 89999998876553 346789999999999999999999999977766544333 5889999999
Q ss_pred HH-HHHHHHhcCCC-CCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeee-eCCCCCCC--hhHHHHHHhCCCEEEc
Q 028938 108 EK-TDQAILSHSSD-LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAV-QMTTDHEP--NTERGSIEDKGGFVSN 182 (201)
Q Consensus 108 ~~-~~~~i~~~~~~-~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~-~LT~dH~~--~~E~~RI~~~gG~v~~ 182 (201)
.. +++.+...... ....+|||++++++.++++|+||+||||+|+++++... +||+||+| +.|+.||+++||.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 88888763211 34567777778899999999999999999999999888 99999999 8999999999999995
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.96 E-value=1.7e-28 Score=210.95 Aligned_cols=145 Identities=29% Similarity=0.471 Sum_probs=116.9
Q ss_pred CCCceEEEEEeeecCCCCCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 028938 28 NVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 107 (201)
Q Consensus 28 ~~~~~~~~~~s~~G~rr~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~a~ 107 (201)
....+.++..+++|.| ++|||++++... .+..+|+|||||+|+++|++++.+|.+.+.+.... ...+.|+++|
T Consensus 18 ~~~~~~~g~~s~~G~R-~~nED~~~v~~~----~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~l~~a~ 90 (381)
T PTZ00224 18 GNSIFRCASACVNGYR-ESMEDAHLLYLT----DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP--MTDERMEELC 90 (381)
T ss_pred CCccEEEEEEeCCCCC-CCCCCeeEeccC----CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHH
Confidence 4567999999999995 899999865322 34579999999999999999999998766543221 1246699999
Q ss_pred HHHHHHHHhcCCCCCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeeeeCCCCCCC--hhHHHHHHhCCCEEEc
Q 028938 108 EKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGGFVSN 182 (201)
Q Consensus 108 ~~~~~~i~~~~~~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~--~~E~~RI~~~gG~v~~ 182 (201)
..+|+.+.+... .+|+|+++++++.+.++|+|||||||+|++++|++++||+||+| +.|++||+++||.+..
T Consensus 91 ~~~d~~i~~~~~---~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~ 164 (381)
T PTZ00224 91 LEIDEEWMDSGR---EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVS 164 (381)
T ss_pred HHHHHHHHhccc---CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecc
Confidence 999999986543 23444444444556899999999999999999999999999999 7799999999999875
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=6.7e-28 Score=198.72 Aligned_cols=143 Identities=28% Similarity=0.283 Sum_probs=119.6
Q ss_pred CCceEEEEEeeecCCCCCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccC----CCC--HHHH
Q 028938 29 VGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF----WVD--PQRS 102 (201)
Q Consensus 29 ~~~~~~~~~s~~G~rr~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~----~~~--~~~~ 102 (201)
...+.+...++.|..|..|||++.+.+...... ..||+|||||||+++++++++.+.+.+.+.... ... +.+.
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~ 83 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEEL 83 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHH
Confidence 456788999999999999999997766433333 679999999999999999998888777665221 111 6799
Q ss_pred HHHHHHHHHHHHHhcCC--CCCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeeeeCCCCCCC--hhHHHH
Q 028938 103 ISKAYEKTDQAILSHSS--DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGS 172 (201)
Q Consensus 103 l~~a~~~~~~~i~~~~~--~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~--~~E~~R 172 (201)
|++++..+++.+..... .....+|||++++++.++++|+|||||||+|++++++++|||.||++ ..|+.+
T Consensus 84 l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~ 157 (262)
T COG0631 84 LKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRG 157 (262)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhc
Confidence 99999999999988653 44588999999999999999999999999999999999999999999 666666
No 7
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.93 E-value=6.3e-25 Score=198.82 Aligned_cols=140 Identities=24% Similarity=0.227 Sum_probs=103.1
Q ss_pred ceEEEEEeeecCCCCCCCccEEEEEee-----cCC---CceEEEEEEcCCCCChH----HHHHHHHHHHHHHhhccCCCC
Q 028938 31 LVKFGFSLVKGKANHPMEDYHVAKFVQ-----LQG---HELGLFAIYDGHLGETV----PAYLQKHLFSNILKEEEFWVD 98 (201)
Q Consensus 31 ~~~~~~~s~~G~rr~~neD~~~~~~~~-----~~~---~~~~~~~V~DGhgG~~~----a~~~~~~l~~~l~~~~~~~~~ 98 (201)
.+.++..|++|.+|+.|||++.+.... ..+ ....+|+|||||||+.. |+++++.+.+.+.+.......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 478899999999889999998654211 111 13579999999998664 445555554444332111123
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCCCccceEEEEEEeCCEEEEEEcccCcEEEE-cCCeeeeCCCCCCC-hhHH
Q 028938 99 PQRSISKAYEKTDQAILSHSSD----LGRGGSTAVTAILINGQRLWVANVGDSRAVLS-TAGVAVQMTTDHEP-NTER 170 (201)
Q Consensus 99 ~~~~l~~a~~~~~~~i~~~~~~----~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~-~~g~~~~LT~dH~~-~~E~ 170 (201)
.++.|+++|..+|+.|.+.... ....+|||++++++.++++|++||||||+|++ ++|++.+||+||++ ..+.
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv 531 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREI 531 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHH
Confidence 4678999999999999874321 23568999999999999999999999999988 57899999999999 4433
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.92 E-value=6.5e-24 Score=172.36 Aligned_cols=146 Identities=38% Similarity=0.523 Sum_probs=119.0
Q ss_pred EEEEEeeecCCCCCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccC-----CCCHHHHHHHHH
Q 028938 33 KFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEF-----WVDPQRSISKAY 107 (201)
Q Consensus 33 ~~~~~s~~G~rr~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~-----~~~~~~~l~~a~ 107 (201)
.++..+..|.| +.|||++.+...... .+..+|+|+|||||...+++++..+.+.+.+.... ...+.+.|+++|
T Consensus 2 ~~~~~~~~g~r-~~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDR-KTNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCC-CCCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 45666777776 799999876543211 25789999999999999999988888877664332 245678899999
Q ss_pred HHHHHHHHhcCC--CCCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeeeeCCCCCCC--hhHHHHHHhCCCEE
Q 028938 108 EKTDQAILSHSS--DLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGGFV 180 (201)
Q Consensus 108 ~~~~~~i~~~~~--~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~--~~E~~RI~~~gG~v 180 (201)
+.+++.+..... .....+|||++++++.+++++++|+||||+|++++++++++|.||++ +.|+.||...+|++
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~ 156 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRV 156 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcE
Confidence 999999987543 23456888888889999999999999999999999999999999999 68999999999973
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.92 E-value=2e-23 Score=170.00 Aligned_cols=148 Identities=39% Similarity=0.600 Sum_probs=122.5
Q ss_pred ceEEEEEeeecCCCCCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCC----CCHHHHHHHH
Q 028938 31 LVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFW----VDPQRSISKA 106 (201)
Q Consensus 31 ~~~~~~~s~~G~rr~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~----~~~~~~l~~a 106 (201)
.+.++..+..|.| .+|||++++.... ..+..+|+|||||||..+|.++++.+...+.+..... ..+.+.|+++
T Consensus 5 ~~~~~~~~~~~~r-~~neD~~~~~~~~--~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (255)
T smart00332 5 GLRYGLSSMQGVR-KPMEDAHVITPDL--SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKA 81 (255)
T ss_pred ceeEEEecCCCCC-CCCcceEEEeccC--CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHH
Confidence 4667776666655 8999998765432 2457899999999999999999999988877654333 2478899999
Q ss_pred HHHHHHHHHhcCCC--CCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeeeeCCCCCCC--hhHHHHHHhCCCEEE
Q 028938 107 YEKTDQAILSHSSD--LGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGGFVS 181 (201)
Q Consensus 107 ~~~~~~~i~~~~~~--~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~--~~E~~RI~~~gG~v~ 181 (201)
+..+++.+...... ....++||++++++.++++|++|+||||+|++++++..+||.||++ +.|..||...++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 82 FLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 99999999875443 2356899999989999999999999999999999999999999999 789999999998764
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-24 Score=180.23 Aligned_cols=65 Identities=43% Similarity=0.675 Sum_probs=58.0
Q ss_pred CCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeeeeCCCCCCC--hhHHHHHHhCCCEEEccCCCc
Q 028938 122 GRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEP--NTERGSIEDKGGFVSNMPGFH 187 (201)
Q Consensus 122 ~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~--~~E~~RI~~~gG~v~~~~g~v 187 (201)
...+|||.++.++.+++|||||.||||+++.|+|+++.|+.||+| ..|..||.++||.|. +.|+|
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vt-lDGRV 393 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVT-LDGRV 393 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEe-eccee
Confidence 356678888889999999999999999999999999999999999 789999999999998 35544
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.87 E-value=2.2e-21 Score=163.95 Aligned_cols=129 Identities=36% Similarity=0.501 Sum_probs=99.2
Q ss_pred CCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhc-------------c-----------------
Q 028938 45 HPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEE-------------E----------------- 94 (201)
Q Consensus 45 ~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~-------------~----------------- 94 (201)
+.-||++.+.... ++.+.|+||||||||.+++.|+..+|+.++..+. +
T Consensus 83 ~~~edrv~~~~s~--~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~ 160 (390)
T KOG0700|consen 83 KAEEDRVSVAVSE--ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLS 160 (390)
T ss_pred CcccCcceeeeec--cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccc
Confidence 4567776443322 4678999999999999999999999998877221 0
Q ss_pred ---C-CCCHHHHHHHHHHHHHHHHHhc-------CCCCCCCccceEEEEEEeCCEEEEEEcccCcEEEEc---CC---ee
Q 028938 95 ---F-WVDPQRSISKAYEKTDQAILSH-------SSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLST---AG---VA 157 (201)
Q Consensus 95 ---~-~~~~~~~l~~a~~~~~~~i~~~-------~~~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~---~g---~~ 157 (201)
. ...+.++|.+||.++++.|.+. ++.. ..+|+|+++.++.+..+||||+|||||+|.. ++ .+
T Consensus 161 ~~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~l-A~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A 239 (390)
T KOG0700|consen 161 SADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPEL-ALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVA 239 (390)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhh-hhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEE
Confidence 0 3457899999999999999753 2333 3444444455899999999999999999974 23 68
Q ss_pred eeCCCCCCC--hhHHHHHHhC
Q 028938 158 VQMTTDHEP--NTERGSIEDK 176 (201)
Q Consensus 158 ~~LT~dH~~--~~E~~RI~~~ 176 (201)
.|||.||+. ++|+.||+..
T Consensus 240 ~qLS~dHn~~ne~Ev~Rir~e 260 (390)
T KOG0700|consen 240 VQLSTDHNASNEDEVRRIRSE 260 (390)
T ss_pred EecChhhccccHHHHHHHHHh
Confidence 999999999 9999999753
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.74 E-value=2.5e-17 Score=136.28 Aligned_cols=136 Identities=22% Similarity=0.340 Sum_probs=95.6
Q ss_pred CCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhcc--------------------------------------CC--CC
Q 028938 59 QGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEE--------------------------------------FW--VD 98 (201)
Q Consensus 59 ~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~--------------------------------------~~--~~ 98 (201)
++.+..+|.+||||.|..+|-.++..+..++.++.. .. .-
T Consensus 140 ~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~L 219 (493)
T KOG1323|consen 140 PRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHL 219 (493)
T ss_pred CCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHh
Confidence 345778999999999988886666555444432100 00 01
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEEEEeCCEEEEEEcccCcEEEEcCCeeeeCCCCCCChhHHHHHHhCCC
Q 028938 99 PQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVLSTAGVAVQMTTDHEPNTERGSIEDKGG 178 (201)
Q Consensus 99 ~~~~l~~a~~~~~~~i~~~~~~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~~~E~~RI~~~gG 178 (201)
+.-+|..||+++|++|..+.......||||+++++.--+|+|+||+|||||++.|++++++|+++.+|..||+||+..+
T Consensus 220 ViGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~La- 298 (493)
T KOG1323|consen 220 VIGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELA- 298 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHh-
Confidence 3578999999999999876554444455554444444469999999999999999999999999999999999998753
Q ss_pred EEEc--cCCCcccccccee
Q 028938 179 FVSN--MPGFHYRHGFESS 195 (201)
Q Consensus 179 ~v~~--~~g~v~rv~~~~~ 195 (201)
+..+ +.++..|+-+++.
T Consensus 299 f~~PeLlgneFtrLEfprR 317 (493)
T KOG1323|consen 299 FRNPELLGNEFTRLEFPRR 317 (493)
T ss_pred hcChHhhcccccceecccc
Confidence 2222 2334455544443
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.64 E-value=5.4e-16 Score=123.46 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=68.8
Q ss_pred EeeecCCCCCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHH----HHHHHHHHHHhhccCCCC--HHHHHHHHHHHH
Q 028938 37 SLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAY----LQKHLFSNILKEEEFWVD--PQRSISKAYEKT 110 (201)
Q Consensus 37 ~s~~G~rr~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~----~~~~l~~~l~~~~~~~~~--~~~~l~~a~~~~ 110 (201)
.+++|.+ ++|||++.+... .+..+++|+||+|+...+.. ++..+.+.+.+....... ..+.++.+..++
T Consensus 3 ~sh~~~~-~~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRG-APNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTS-SS--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCC-CCCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 4678887 899999863322 33456699999997665544 444444444433322111 122233333333
Q ss_pred HHHH-----HhcCCCCCCCccceEEEEEEeCCEEEEEEcccCcEEE-EcCCeeeeCCCCCCC
Q 028938 111 DQAI-----LSHSSDLGRGGSTAVTAILINGQRLWVANVGDSRAVL-STAGVAVQMTTDHEP 166 (201)
Q Consensus 111 ~~~i-----~~~~~~~~~~ggTtl~~~~i~~~~l~~anvGDSRa~l-~~~g~~~~LT~dH~~ 166 (201)
...+ ..........++||++++++.++.++++|+||||+|+ .+++++.+++.+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~ 139 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG 139 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc
Confidence 3221 1111234466789999999999999999999999965 589999999999985
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-10 Score=96.55 Aligned_cols=109 Identities=24% Similarity=0.232 Sum_probs=73.3
Q ss_pred CCCccEEEEEeecCCCceEEEEEEcCCCCCh----HHHHHHHHHHHHH----HhhccCCCCHHHHHHHHHHHHHHHHHhc
Q 028938 46 PMEDYHVAKFVQLQGHELGLFAIYDGHLGET----VPAYLQKHLFSNI----LKEEEFWVDPQRSISKAYEKTDQAILSH 117 (201)
Q Consensus 46 ~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~----~a~~~~~~l~~~l----~~~~~~~~~~~~~l~~a~~~~~~~i~~~ 117 (201)
.-||++++..+ ....+.||+||-||+. -+...+.+|+... .+......+|...|..+|.++-++
T Consensus 90 ~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~---- 161 (330)
T KOG1379|consen 90 GGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ---- 161 (330)
T ss_pred CCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc----
Confidence 58999987644 3457999999988732 2233334444333 333334457888999988876421
Q ss_pred CCCCCCCccceEEEEEEe--CCEEEEEEcccCcEEEEcCCeeeeCCCCC
Q 028938 118 SSDLGRGGSTAVTAILIN--GQRLWVANVGDSRAVLSTAGVAVQMTTDH 164 (201)
Q Consensus 118 ~~~~~~~ggTtl~~~~i~--~~~l~~anvGDSRa~l~~~g~~~~LT~dH 164 (201)
+....+++|++++ .+. +.+||+||+|||-..++|+|++++-|...
T Consensus 162 -~~~~vGSSTAcI~-~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q 208 (330)
T KOG1379|consen 162 -KVPIVGSSTACIL-ALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQ 208 (330)
T ss_pred -CCCCCCcceeeee-eeecCCCeEEEeeccCcceEEEECCEEEEcCchh
Confidence 1222344455444 555 78999999999999999999888777654
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.22 E-value=8.9e-10 Score=86.33 Aligned_cols=123 Identities=20% Similarity=0.058 Sum_probs=84.5
Q ss_pred eEEEEEeeecCCCCCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 028938 32 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTD 111 (201)
Q Consensus 32 ~~~~~~s~~G~rr~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~a~~~~~ 111 (201)
+.++.....+. ...-|.+.+.... ++..+++|+||||++..|.+++..+...+.+...... .+.+.+..+|
T Consensus 4 ~~~~~~~~p~~--~~~GD~~~~~~~~---~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDAT--QVGGDFYDVVKLP---EGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLN 74 (193)
T ss_pred eEEEEEEcchH--hcCccEEEEEEeC---CCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHH
Confidence 44555555554 3688887543322 3468999999999999998888887777655432222 3556667778
Q ss_pred HHHHhcCCCCCCCccceEEEEEE--eCCEEEEEEcccCcEEEEc-CCeeeeCCCCCCC
Q 028938 112 QAILSHSSDLGRGGSTAVTAILI--NGQRLWVANVGDSRAVLST-AGVAVQMTTDHEP 166 (201)
Q Consensus 112 ~~i~~~~~~~~~~ggTtl~~~~i--~~~~l~~anvGDSRa~l~~-~g~~~~LT~dH~~ 166 (201)
+.+.... ....++|++++++ ..++++++|+||+|+|+++ ++...+++.+..+
T Consensus 75 ~~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~~ 129 (193)
T smart00331 75 RAIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLGA 129 (193)
T ss_pred HHHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCCc
Confidence 7776652 2335666666666 5789999999999999998 6666666666554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.83 E-value=8.6e-09 Score=95.71 Aligned_cols=154 Identities=21% Similarity=0.297 Sum_probs=115.7
Q ss_pred ceEEEEEeeecCCCCCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 028938 31 LVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKT 110 (201)
Q Consensus 31 ~~~~~~~s~~G~rr~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~a~~~~ 110 (201)
-..||++...|+|++ +-=+.+ .....-+++-..|+++||-+..+..+.+...+...+.++.....+-.+.|+.+|..+
T Consensus 521 ~~t~Gv~~~~gqrnk-~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~ 598 (1081)
T KOG0618|consen 521 LWTYGVAGVSGQRNK-VCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRL 598 (1081)
T ss_pred heeeccchhcccccc-hhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 455999999999843 322211 222223355689999999999999999999998888887665555667799999999
Q ss_pred HHHHHhcCCCCCCCccceEEEEEEeC-------CEEEEEEcccCcEEEEcCCeeeeCCCCCCC---hhHHHHHHhCCCEE
Q 028938 111 DQAILSHSSDLGRGGSTAVTAILING-------QRLWVANVGDSRAVLSTAGVAVQMTTDHEP---NTERGSIEDKGGFV 180 (201)
Q Consensus 111 ~~~i~~~~~~~~~~ggTtl~~~~i~~-------~~l~~anvGDSRa~l~~~g~~~~LT~dH~~---~~E~~RI~~~gG~v 180 (201)
++++.+..... |+..+++-+..+ .++.+||+|+|.++++++|+..++|+-... ++|.+||..++|+|
T Consensus 599 ~rklg~~g~~l---g~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i 675 (1081)
T KOG0618|consen 599 NRKLGEEGQVL---GGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFI 675 (1081)
T ss_pred hhhhhhhhccc---cchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCee
Confidence 99996654433 566555533322 378999999999999999999999877533 99999999999999
Q ss_pred EccCCCcccc
Q 028938 181 SNMPGFHYRH 190 (201)
Q Consensus 181 ~~~~g~v~rv 190 (201)
.. ++.+.+|
T Consensus 676 ~e-d~k~ngv 684 (1081)
T KOG0618|consen 676 TE-DNKLNGV 684 (1081)
T ss_pred cC-CCeeece
Confidence 96 5555554
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=98.43 E-value=5.8e-06 Score=77.77 Aligned_cols=112 Identities=13% Similarity=0.002 Sum_probs=74.9
Q ss_pred CCCCccEEEEEeecCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 028938 45 HPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRG 124 (201)
Q Consensus 45 ~~neD~~~~~~~~~~~~~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~ 124 (201)
..+.|.+.+.... ++..+++|+||+|.+..|...+....+.+.+.....-+ ...+++.+|..+..... ..
T Consensus 565 ~vsGD~y~~~~l~---~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~---~~ 634 (764)
T TIGR02865 565 LVSGDSYSFGKLS---AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRST---DE 634 (764)
T ss_pred cccCceEEEEEEC---CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCC---CC
Confidence 5789998543322 34578999999997777766554443332221111112 35667777877755422 23
Q ss_pred ccceEEEEEEe--CCEEEEEEcccCcEEEEcCCeeeeCCCCCCC
Q 028938 125 GSTAVTAILIN--GQRLWVANVGDSRAVLSTAGVAVQMTTDHEP 166 (201)
Q Consensus 125 ggTtl~~~~i~--~~~l~~anvGDSRa~l~~~g~~~~LT~dH~~ 166 (201)
..+|+..++++ .+++.++|+|+++.|+.+++++.+++..+.|
T Consensus 635 ~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP 678 (764)
T TIGR02865 635 KFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP 678 (764)
T ss_pred eEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce
Confidence 46776666664 6899999999999999999999999887766
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.85 E-value=0.00057 Score=53.07 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=62.1
Q ss_pred ceEEEEEEcCCCCChHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEEEEe--CCEE
Q 028938 62 ELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILIN--GQRL 139 (201)
Q Consensus 62 ~~~~~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~ggTtl~~~~i~--~~~l 139 (201)
+..++.|.|+.|.+-.|...+..+...+........+ ..+.+..+|+.+....... ...+|++++.+. .+++
T Consensus 3 ~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~l 76 (193)
T PF07228_consen 3 GRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGTL 76 (193)
T ss_dssp TEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceEE
Confidence 4678999999997777777666655544332222222 4555666676664432222 234444444544 6789
Q ss_pred EEEEcccCcEEEEcC--CeeeeCCCCCCC
Q 028938 140 WVANVGDSRAVLSTA--GVAVQMTTDHEP 166 (201)
Q Consensus 140 ~~anvGDSRa~l~~~--g~~~~LT~dH~~ 166 (201)
+++|+|+++++++++ +....+.....|
T Consensus 77 ~~~~aG~~~~l~~~~~~~~~~~~~~~~~~ 105 (193)
T PF07228_consen 77 TYANAGHPPPLLLRPGGREIEQLESEGPP 105 (193)
T ss_dssp EEEEESSSEEEEEETTCTEEEEETCSSBB
T ss_pred EEeCCCCCCEEEEeccccceeecccCccc
Confidence 999999999999998 455555554444
No 19
>PRK10693 response regulator of RpoS; Provisional
Probab=61.87 E-value=94 Score=25.92 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=51.8
Q ss_pred EEEEEE--cCCCC-ChHHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCccceEEEEEEe--CC
Q 028938 64 GLFAIY--DGHLG-ETVPAYLQKHLFSNILKEEEF-WVDPQRSISKAYEKTDQAILSHSSDLGRGGSTAVTAILIN--GQ 137 (201)
Q Consensus 64 ~~~~V~--DGhgG-~~~a~~~~~~l~~~l~~~~~~-~~~~~~~l~~a~~~~~~~i~~~~~~~~~~ggTtl~~~~i~--~~ 137 (201)
..|-++ -|||+ +..|..+...++..+++.... .........+.+..+|+.+....... .-|.+.+ +++ .+
T Consensus 164 ~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~---~~t~~~~-~~d~~~~ 239 (303)
T PRK10693 164 LAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG---QFPLLVG-YYHRELK 239 (303)
T ss_pred EEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc---eeeEEEE-EEEcCCC
Confidence 444444 47875 445555555656655544210 00000113555667777776653222 1244333 444 56
Q ss_pred EEEEEEcccCcEEEEcCCeeeeCCCCCCC
Q 028938 138 RLWVANVGDSRAVLSTAGVAVQMTTDHEP 166 (201)
Q Consensus 138 ~l~~anvGDSRa~l~~~g~~~~LT~dH~~ 166 (201)
.+.++|.|-...++..++++ .++ ...|
T Consensus 240 ~l~~~~AGhp~~~~~~~~~~-~~~-~g~p 266 (303)
T PRK10693 240 NLILVSAGLNATLNTGEHQV-QLS-NGVP 266 (303)
T ss_pred eEEEEeCCCCCEEecCCeEE-Eec-CCCc
Confidence 89999999999886545545 343 3555
No 20
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=38.65 E-value=86 Score=22.41 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=29.2
Q ss_pred CCccceEEEEEEeCCEEEEEEcccCcEEEEcCC----eeeeCCCCCCC
Q 028938 123 RGGSTAVTAILINGQRLWVANVGDSRAVLSTAG----VAVQMTTDHEP 166 (201)
Q Consensus 123 ~~ggTtl~~~~i~~~~l~~anvGDSRa~l~~~g----~~~~LT~dH~~ 166 (201)
.+.|+|+.+++.++ . .+.||.-++-..+| +++.|..++..
T Consensus 12 ~G~G~t~dvIl~~G-t---L~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~ 55 (110)
T cd03703 12 EGLGTTIDVILYDG-T---LREGDTIVVCGLNGPIVTKVRALLKPQPL 55 (110)
T ss_pred CCCceEEEEEEECC-e---EecCCEEEEccCCCCceEEEeEecCCCCc
Confidence 56788888855554 4 56899877766776 88888877764
No 21
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=33.53 E-value=38 Score=21.01 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.8
Q ss_pred hhHHHHHHhCCCEEEc
Q 028938 167 NTERGSIEDKGGFVSN 182 (201)
Q Consensus 167 ~~E~~RI~~~gG~v~~ 182 (201)
..|.+||.+.||.|..
T Consensus 37 s~~~q~I~r~GGkIvs 52 (56)
T PF01383_consen 37 SQEMQRINRQGGKIVS 52 (56)
T ss_dssp HHHHHHHHHCT-EEEE
T ss_pred HHHHHHHHHCCCEEEE
Confidence 7899999999999986
No 22
>KOG3948 consensus Mediator of U snRNA nuclear export PHAX [RNA processing and modification]
Probab=31.16 E-value=56 Score=27.93 Aligned_cols=32 Identities=31% Similarity=0.410 Sum_probs=27.1
Q ss_pred hhHHHHHHhCCCEEEccCCCccccccceeeeeec
Q 028938 167 NTERGSIEDKGGFVSNMPGFHYRHGFESSLLIVI 200 (201)
Q Consensus 167 ~~E~~RI~~~gG~v~~~~g~v~rv~~~~~~~~~~ 200 (201)
-.|..+|++.||.+.- +| ..|..|.++|+.++
T Consensus 231 ~nET~eIEqnGGm~ta-dG-sRRRTPGGVFlnLi 262 (369)
T KOG3948|consen 231 VNETVEIEQNGGMVTA-DG-SRRRTPGGVFLNLI 262 (369)
T ss_pred HHHHHHHHhcCCeEec-cC-ccccCCCceeeeec
Confidence 5788999999999985 67 78889999998764
No 23
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=31.11 E-value=55 Score=27.37 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.3
Q ss_pred CCccceEEEEEEeCCEEEEEEcccC
Q 028938 123 RGGSTAVTAILINGQRLWVANVGDS 147 (201)
Q Consensus 123 ~~ggTtl~~~~i~~~~l~~anvGDS 147 (201)
.+|||++++ ++++.+|..|+|-+
T Consensus 131 LSGCT~i~A--~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 131 LSGCTMIYA--RKDNYFYAYHTGKS 153 (281)
T ss_dssp BSS-EEEEE--EETTEEEEEEEEES
T ss_pred cCCCEEEEE--EcCCeEEEEEcCCC
Confidence 456666554 68899999999987
No 24
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=26.08 E-value=17 Score=27.56 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=9.8
Q ss_pred CceEEEEEEcC-CCCChH
Q 028938 61 HELGLFAIYDG-HLGETV 77 (201)
Q Consensus 61 ~~~~~~~V~DG-hgG~~~ 77 (201)
+....+|.||| |-|++.
T Consensus 6 ~~~v~iG~FDGvH~GHq~ 23 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQK 23 (157)
T ss_dssp -EEEEES--TT--HHHHH
T ss_pred CcEEEEeCCCCccHHHHH
Confidence 34577899999 888753
No 25
>KOG3403 consensus Translation initiation factor 1A (eIF-1A) [Translation, ribosomal structure and biogenesis]
Probab=25.14 E-value=98 Score=22.64 Aligned_cols=41 Identities=15% Similarity=-0.057 Sum_probs=31.5
Q ss_pred CEEEEEEcccCcEEEEcCCeeeeCCCCCCC-hhHHHHHHhCC
Q 028938 137 QRLWVANVGDSRAVLSTAGVAVQMTTDHEP-NTERGSIEDKG 177 (201)
Q Consensus 137 ~~l~~anvGDSRa~l~~~g~~~~LT~dH~~-~~E~~RI~~~g 177 (201)
.+-++.|.||--.+-.|+.+-.+--..++. |.|.+.+...|
T Consensus 66 rkkVwi~~GDIiLv~lRD~qd~kaDvilKY~~dEar~LK~~G 107 (145)
T KOG3403|consen 66 RKKVWINQGDIILVGLRDYQDDKADVILKYMPDEARILKAYG 107 (145)
T ss_pred eeeEeecCCCEEEEeeecccccccceehhhChHHHHHHHhcC
Confidence 356788999987777888877777888888 77776666544
No 26
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=24.11 E-value=1.1e+02 Score=16.63 Aligned_cols=18 Identities=28% Similarity=0.577 Sum_probs=14.2
Q ss_pred CCEEEEEEcccCcEEEEc
Q 028938 136 GQRLWVANVGDSRAVLST 153 (201)
Q Consensus 136 ~~~l~~anvGDSRa~l~~ 153 (201)
++.+|++|-|+..+.++.
T Consensus 3 ~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 567899998888887774
No 27
>PLN02388 phosphopantetheine adenylyltransferase
Probab=20.93 E-value=41 Score=26.16 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=13.6
Q ss_pred CceEEEEEEcC-CCCChH
Q 028938 61 HELGLFAIYDG-HLGETV 77 (201)
Q Consensus 61 ~~~~~~~V~DG-hgG~~~ 77 (201)
....+.|-||| |-|+..
T Consensus 20 ~~Vv~gGtFDgLH~GHq~ 37 (177)
T PLN02388 20 GAVVLGGTFDRLHDGHRL 37 (177)
T ss_pred CeEEEEecCCccCHHHHH
Confidence 34678899999 999764
Done!