BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028939
         (201 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
           (I4122)
          Length = 677

 Score = 28.9 bits (63), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 139 VIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWC-NVGFWKYSRHPN 185
           V+ WI    G  +     +Q+LS    P+NR +WC  +   K   HPN
Sbjct: 31  VLRWIHQDTGEQVAIKQCRQELS----PKNRERWCLEIQIMKKLNHPN 74


>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
 pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
 pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
 pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
 pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
 pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
 pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
 pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
          Length = 676

 Score = 28.9 bits (63), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 139 VIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWC-NVGFWKYSRHPN 185
           V+ WI    G  +     +Q+LS    P+NR +WC  +   K   HPN
Sbjct: 30  VLRWIHQDTGEQVAIKQCRQELS----PKNRERWCLEIQIMKKLNHPN 73


>pdb|3F6N|A Chain A, Crystal Structure Of The Virion-Associated Protein P3 From
           Caulimovirus
 pdb|3F6N|B Chain B, Crystal Structure Of The Virion-Associated Protein P3 From
           Caulimovirus
 pdb|3F6N|C Chain C, Crystal Structure Of The Virion-Associated Protein P3 From
           Caulimovirus
 pdb|3F6N|D Chain D, Crystal Structure Of The Virion-Associated Protein P3 From
           Caulimovirus
          Length = 129

 Score = 27.7 bits (60), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 151 IEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNY 186
           +EA+  Q K      P+ +GK  N+G + Y   PNY
Sbjct: 67  LEALGTQPKEQLIEQPKEKGKGLNLGKYSY---PNY 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,611,246
Number of Sequences: 62578
Number of extensions: 199819
Number of successful extensions: 520
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 6
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)