BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028939
         (201 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O74507|YJD4_SCHPO Uncharacterized protein C594.04c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPCC594.04c PE=3 SV=2
          Length = 344

 Score = 32.7 bits (73), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 27/155 (17%)

Query: 62  RQVVLTFLAVVWGLRLAL-FLLMRILNWG-EDRRFDEMRSNLGK-----LAIFWI--FQA 112
           R +++ FL  +W  RL   +      N G ED R+  +R  + K        F+I  FQ 
Sbjct: 108 RLMIMAFLQTLWSARLTYNYYRKGGYNRGAEDYRWVRVRQIMPKWIYPLFHYFYIHIFQV 167

Query: 113 VWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENR--- 169
           + ++ ++ P  +   +  + +  A D I   ++     +E +ADQQ+  +  +  +    
Sbjct: 168 LHLYLLASPTYIAMLAGNERAFGAWDWIALELFMFMFVLEMLADQQQWDYYEARNHYNVD 227

Query: 170 --------------GKWCNV-GFWKYSRHPNYFGE 189
                         G+  N  G +++SRHPN+  E
Sbjct: 228 KTVPPRFKYDLLSLGRGFNATGLFRWSRHPNFLAE 262


>sp|Q9LDR4|ERG24_ARATH Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2
          Length = 369

 Score = 31.6 bits (70), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 139 VIGWIMWSVGVSIEAIADQQKLSFKNSPENR----------GKWCNVGFWKYSRHPNYFG 188
           V+  +++ +G  +   A++QK  FK +P+            GK    G+W  +RH NY G
Sbjct: 245 VVNCLVFLIGYMVFRGANKQKHIFKKNPKTPIWGKPPVVVGGKLLVSGYWGIARHCNYLG 304

Query: 189 EV 190
           ++
Sbjct: 305 DL 306


>sp|P23913|LBR_CHICK Lamin-B receptor OS=Gallus gallus GN=LBR PE=1 SV=1
          Length = 637

 Score = 30.8 bits (68), Expect = 5.9,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 26/84 (30%)

Query: 133 SVQAVDVIGW---IMWSVGVSIEAI----------ADQQKLSFKNSPEN----------- 168
           S+QA  ++G    I W V  +I  +          A+ QK +F+ +P +           
Sbjct: 462 SLQAFYLVGHPIAISWPVAAAITILNCIGYYIFRSANSQKNNFRRNPADPKLSYLKVIPT 521

Query: 169 -RGKWCNV-GFWKYSRHPNYFGEV 190
             GK   V G+W + RHPNY G++
Sbjct: 522 ATGKGLLVTGWWGFVRHPNYLGDI 545


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.140    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,589,808
Number of Sequences: 539616
Number of extensions: 2684446
Number of successful extensions: 6552
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 6538
Number of HSP's gapped (non-prelim): 45
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.9 bits)