Query 028939
Match_columns 201
No_of_seqs 171 out of 1002
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:56:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3752 Steroid 5-alpha reduct 100.0 3E-54 6.4E-59 363.3 21.7 193 5-198 11-210 (272)
2 PF06966 DUF1295: Protein of u 100.0 1.3E-53 2.9E-58 362.6 17.9 175 25-199 2-182 (235)
3 KOG4650 Predicted steroid redu 100.0 7E-44 1.5E-48 300.3 15.0 163 36-198 65-241 (311)
4 PF01222 ERG4_ERG24: Ergostero 99.5 2.8E-14 6E-19 131.2 6.5 105 93-200 260-379 (432)
5 KOG1435 Sterol reductase/lamin 99.4 6.5E-14 1.4E-18 126.7 1.9 110 88-200 249-375 (428)
6 KOG1638 Steroid reductase [Lip 99.3 8.9E-12 1.9E-16 105.5 7.5 65 136-200 147-211 (257)
7 PLN02392 probable steroid redu 99.1 1.6E-10 3.5E-15 99.8 6.0 64 136-200 150-213 (260)
8 PF02544 Steroid_dh: 3-oxo-5-a 99.0 6.1E-10 1.3E-14 88.8 6.0 66 135-200 39-104 (150)
9 PLN02560 enoyl-CoA reductase 98.8 1.6E-08 3.4E-13 89.6 8.2 65 136-200 192-257 (308)
10 PLN03164 3-oxo-5-alpha-steroid 98.7 2.3E-08 4.9E-13 88.6 6.4 66 135-200 208-275 (323)
11 PF04191 PEMT: Phospholipid me 98.6 1E-07 2.2E-12 70.7 5.7 64 137-200 2-70 (106)
12 PF04140 ICMT: Isoprenylcystei 98.5 9.2E-08 2E-12 70.7 4.0 53 143-195 3-58 (94)
13 COG2020 STE14 Putative protein 98.4 2.1E-06 4.6E-11 70.8 8.6 64 135-198 67-133 (187)
14 COG1755 Uncharacterized protei 98.0 1.3E-05 2.8E-10 64.7 5.2 65 133-197 66-134 (172)
15 KOG2628 Farnesyl cysteine-carb 97.4 9.7E-05 2.1E-09 61.2 2.2 33 166-198 116-148 (201)
16 KOG1640 Predicted steroid redu 96.8 0.028 6.2E-07 49.4 12.0 62 136-197 192-255 (304)
17 KOG1639 Steroid reductase requ 95.3 0.018 3.8E-07 49.8 3.4 64 137-200 187-252 (297)
18 COG3162 Predicted membrane pro 61.4 67 0.0015 24.1 8.3 63 91-154 12-80 (102)
19 PRK02971 4-amino-4-deoxy-L-ara 46.7 68 0.0015 24.7 5.8 62 10-71 50-114 (129)
20 COG2510 Predicted membrane pro 44.1 1.6E+02 0.0035 23.3 7.9 56 16-71 75-131 (140)
21 PF07298 NnrU: NnrU protein; 41.9 38 0.00083 28.0 3.9 43 136-191 68-110 (191)
22 PF15113 TMEM117: TMEM117 prot 37.8 59 0.0013 29.9 4.6 62 57-119 61-122 (415)
23 PF03818 MadM: Malonate/sodium 37.5 70 0.0015 21.7 3.9 52 3-57 6-57 (60)
24 COG4757 Predicted alpha/beta h 33.3 11 0.00025 32.8 -0.5 11 179-189 191-201 (281)
25 TIGR00183 prok_nadp_idh isocit 30.6 48 0.001 30.9 3.0 14 185-198 303-316 (416)
26 PF06341 DUF1056: Protein of u 28.0 58 0.0012 22.4 2.3 22 137-159 39-60 (63)
27 PF04341 DUF485: Protein of un 28.0 2.3E+02 0.005 20.3 8.3 61 90-151 3-69 (91)
28 cd02552 PseudoU_synth_TruD_lik 26.2 23 0.0005 30.2 0.1 8 183-190 147-154 (232)
29 PF09124 Endonuc-dimeris: T4 r 25.8 43 0.00093 22.3 1.3 13 183-195 2-14 (54)
30 KOG1582 UDP-galactose transpor 25.6 88 0.0019 28.1 3.6 41 8-48 43-83 (367)
31 PRK08601 NADH dehydrogenase su 24.2 6.4E+02 0.014 24.2 13.4 24 56-80 374-397 (509)
32 PF05653 Mg_trans_NIPA: Magnes 23.1 1.7E+02 0.0037 25.7 5.0 53 138-197 5-58 (300)
33 PHA00728 hypothetical protein 21.3 21 0.00047 27.8 -0.9 13 178-190 78-90 (151)
34 KOG1231 Proteins containing th 21.2 60 0.0013 30.8 1.8 40 153-201 330-370 (505)
35 cd02575 PseudoU_synth_EcTruD P 21.1 24 0.00053 30.6 -0.7 8 183-190 140-147 (253)
36 PF10762 DUF2583: Protein of u 20.8 69 0.0015 23.4 1.7 9 33-41 66-74 (89)
37 PRK15051 4-amino-4-deoxy-L-ara 20.1 3.7E+02 0.008 19.8 6.3 49 18-66 47-96 (111)
No 1
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=100.00 E-value=3e-54 Score=363.30 Aligned_cols=193 Identities=28% Similarity=0.472 Sum_probs=179.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhccCcEeecccchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 028939 5 IDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMR 84 (201)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~iW~~RL~~~l~~R 84 (201)
..+++....+++.++++.+.|++|..+||.+++|..||.++++.++..+..+.++..|+++++.++++||+||+.|+.+|
T Consensus 11 ~~~~~~~v~al~~~v~~~~~w~vs~~tg~~~~VD~~Wg~~~~~~a~~~~l~~~~~~~r~~l~~~LvtlWs~RL~~hl~rR 90 (272)
T COG3752 11 SNLMVIVVVALALAVLFAVAWAVSRRTGNYSWVDAVWGGGFVAVAVVLALLGEGDPRRRWLLLFLVTLWSLRLGWHLYRR 90 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeehhccchHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778888899999999999999999999999999999999999999888877777899999999999999999999999
Q ss_pred hcCcCcchhHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 028939 85 ILNWGEDRRFDEMRSNLG-------KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQ 157 (201)
Q Consensus 85 ~~~~~eD~Ry~~~r~~~~-------~~~~~~~~Q~~~~~~~slP~~~~~~~~~~~~l~~~~~ig~~l~~~G~~~E~~AD~ 157 (201)
.+++|||+||.++|++++ +++.+|.+|++..+++++|+++++..+ +++..+.|++|++++++|+.+|+++|+
T Consensus 91 ~~~~geD~RY~~l~~~wg~t~~~~~~l~~vf~lQ~ll~~ilalpi~~a~~~~-~~~~~~~d~~g~~iwivg~~fE~lgD~ 169 (272)
T COG3752 91 TRGKGEDPRYVNLRQRWGKTIYPLKALFIVFGLQALLLFILALPIYLAALNG-PREFGWWDVIGLAIWIVGIVFEALGDA 169 (272)
T ss_pred hcCCCCChHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999876 356789999999999999999987653 556899999999999999999999999
Q ss_pred HHHHhcCCCCCCCccccccccccccccchHHHHHHHhhhhc
Q 028939 158 QKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNV 198 (201)
Q Consensus 158 Ql~~Fr~~~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l 198 (201)
|++.||++|+||||+|++||||||||||||||+|.|+++-+
T Consensus 170 QL~~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~L 210 (272)
T COG3752 170 QLWVFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYL 210 (272)
T ss_pred HHHHHHhChhhccccccccceecccCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754
No 2
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=100.00 E-value=1.3e-53 Score=362.56 Aligned_cols=175 Identities=38% Similarity=0.796 Sum_probs=164.3
Q ss_pred HHHHHHhccCcEeecccchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhHHHHHHhhh--
Q 028939 25 FVITALFKFDKVTDFAGSTNFIIIALLTLILKGSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLG-- 102 (201)
Q Consensus 25 ~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~iW~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~-- 102 (201)
|+++..+||+++||++||++++++++.++..+++.+.|++++++++++||+||+.|+++|..+++||+||+++|++++
T Consensus 2 w~~s~~~~n~s~vD~~ws~~~~~~a~~~~~~~~~~~~r~~lv~~lv~~W~~RL~~~l~~R~~~~~eD~R~~~~r~~~~~~ 81 (235)
T PF06966_consen 2 WIISLATRNESIVDILWSFGFVLVAWVYALFSDGFSPRQLLVAALVIVWGLRLGYFLFRRNLGWGEDWRYDDLRKKWGEW 81 (235)
T ss_pred eeehHhhCCCCEEECcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHhcCcc
Confidence 678999999999999999999999999988888889999999999999999999999999999899999999999863
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccccc
Q 028939 103 ----KLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFW 178 (201)
Q Consensus 103 ----~~~~~~~~Q~~~~~~~slP~~~~~~~~~~~~l~~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~~~~gk~~~~GLw 178 (201)
+++.+|++|+++++++++|+++++..+++++++..|++|++++++|+.+|++||.||++||++|+||||+|++|||
T Consensus 82 ~~~~~~~~~~~~q~~~~~~~~lP~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw 161 (235)
T PF06966_consen 82 FWPFSFFFIFLFQALLVWLISLPVYLANSSPPNPPLNWLDILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLW 161 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCee
Confidence 5677899999999999999999887555667899999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHhhhhcc
Q 028939 179 KYSRHPNYFGEVGPSLLLNVT 199 (201)
Q Consensus 179 ~ysRHPNYfGE~l~~l~~~l~ 199 (201)
+||||||||||+++|.+..+.
T Consensus 162 ~~sRHPNYfGE~l~W~g~~~~ 182 (235)
T PF06966_consen 162 RYSRHPNYFGEILFWWGIYLA 182 (235)
T ss_pred eeeeCchHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 3
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=100.00 E-value=7e-44 Score=300.28 Aligned_cols=163 Identities=56% Similarity=0.929 Sum_probs=142.6
Q ss_pred EeecccchHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHHHHHHHHHHh-hcCcC-cchhHHHHHHhhhh------HH
Q 028939 36 VTDFAGSTNFIIIALLTLIL--KGSWHFRQVVLTFLAVVWGLRLALFLLMR-ILNWG-EDRRFDEMRSNLGK------LA 105 (201)
Q Consensus 36 ~~D~~w~~~~~~~~~~~~~~--~~~~~~r~~l~~~l~~iW~~RL~~~l~~R-~~~~~-eD~Ry~~~r~~~~~------~~ 105 (201)
..|+.|...++..+...+.. .+-.+.|+++++.++++||+||++++++| ++.+| ||+||+++|++.++ ++
T Consensus 65 ~~d~~W~ilp~~~~~~f~~~~l~n~~~~R~mIl~~L~~vWs~RLt~ny~rr~~~~wG~ED~Rf~d~R~~~gK~~~~~~~f 144 (311)
T KOG4650|consen 65 TKDRLWHILPTAFSLHFLFYGLYNIASRRQMILTFLVVVWSLRLTYNYLRRGILQWGAEDRRFDDVRQNIGKWIYLFHLF 144 (311)
T ss_pred ecccceeechHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchhhhHHHHHHHhhhHHHHHHHH
Confidence 34777777766665554332 35556799999999999999999999999 67777 99999999999987 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCc-cccccccccc
Q 028939 106 IFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGWIMWSVGVSIEAIADQQKLSFK---NSPENRGK-WCNVGFWKYS 181 (201)
Q Consensus 106 ~~~~~Q~~~~~~~slP~~~~~~~~~~~~l~~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr---~~~~~~gk-~~~~GLw~ys 181 (201)
.+|.+|+++++.+++|+|+++++..+..+++.|++|..++++|+.+|+.||+||.+|+ ++++|+|| .|++|+||||
T Consensus 145 ~~~ifQ~v~l~~v~lPlyiv~~~d~~r~f~~wD~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwryS 224 (311)
T KOG4650|consen 145 YFWIFQAVWLWTVSLPLYIVNASDGGRAFGPWDVIGWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYS 224 (311)
T ss_pred HHHHHHHHHHHHhhcchheeeecCCccccChHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeec
Confidence 8899999999999999999987665556899999999999999999999999999999 67788888 9999999999
Q ss_pred cccchHHHHHHHhhhhc
Q 028939 182 RHPNYFGEVGPSLLLNV 198 (201)
Q Consensus 182 RHPNYfGE~l~~l~~~l 198 (201)
|||||+||++.|+|+-+
T Consensus 225 RHPNylgEqL~Wwglyv 241 (311)
T KOG4650|consen 225 RHPNYLGEQLLWWGLYV 241 (311)
T ss_pred cCccHHHHHHHHHHHHH
Confidence 99999999999998754
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.50 E-value=2.8e-14 Score=131.17 Aligned_cols=105 Identities=22% Similarity=0.250 Sum_probs=73.2
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---
Q 028939 93 RFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAV--DVIGWIMWSVGVSIEAIADQQKLSFKNSPE--- 167 (201)
Q Consensus 93 Ry~~~r~~~~~~~~~~~~Q~~~~~~~slP~~~~~~~~~~~~l~~~--~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~~--- 167 (201)
.+|...++.|-+..+..+-.+....++.+.|++.+ | .+++.. ...-.++.++|+.+...||.||.+||++|+
T Consensus 260 t~Di~~d~fGfml~~g~l~~vPf~Yt~~~~yl~~~-p--~~l~~~~~~~~i~~l~~~gy~i~r~sn~QK~~FR~~p~~p~ 336 (432)
T PF01222_consen 260 TMDITHDGFGFMLCFGDLVWVPFTYTLQARYLVDH-P--VELSWPTYAAAILALGLVGYYIFRGSNSQKNRFRRNPKDPK 336 (432)
T ss_pred eeeeeEcCccceeehhhHhhhhHhhhcceeEEEeC-C--ccCCcHHHHHHHHHHHHHHHHHHHHhchhHHHhcCCCCCCc
Confidence 35555666665544444443443333344445543 2 234444 233345779999999999999999997652
Q ss_pred ---------CC-CccccccccccccccchHHHHHHHhhhhccC
Q 028939 168 ---------NR-GKWCNVGFWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 168 ---------~~-gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
++ .|++.||.|+++|||||+||+++.++|++++
T Consensus 337 ~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~ 379 (432)
T PF01222_consen 337 VIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPC 379 (432)
T ss_pred ccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHH
Confidence 23 4799999999999999999999999999875
No 5
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.40 E-value=6.5e-14 Score=126.65 Aligned_cols=110 Identities=24% Similarity=0.358 Sum_probs=76.9
Q ss_pred cCcc---hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 028939 88 WGED---RRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNASDRDPSVQAVDVIGW-IMWSVGVSIEAIADQQKLSFK 163 (201)
Q Consensus 88 ~~eD---~Ry~~~r~~~~~~~~~~~~Q~~~~~~~slP~~~~~~~~~~~~l~~~~~ig~-~l~~~G~~~E~~AD~Ql~~Fr 163 (201)
+.|| .-+|.-++..|.+..++-+-.+....++.-.|+..+ | .++++....++ ++.+.|+.+...||.||.+||
T Consensus 249 w~E~~~l~TmDi~hd~FGfmL~fgd~v~vP~~Yt~~~~yL~~h-p--v~l~~~~a~~i~~l~l~gyyifr~an~QK~~FR 325 (428)
T KOG1435|consen 249 WNEELVLTTMDIAHDGFGFMLIFGDLVWVPFTYTLQALYLVSH-P--VELGWPMAVGILVLLLLGYYIFRGANAQKNEFR 325 (428)
T ss_pred hhhhhhcchhhhhccCcceeeeehhhcccceeeecceeeEEEC-c--cccchHHHHHHHHHHHhheeEeeccchhHHHHh
Confidence 4566 334444555555444444444443333333445544 2 24666554444 567999999999999999999
Q ss_pred CCC-------------CCCCccccccccccccccchHHHHHHHhhhhccC
Q 028939 164 NSP-------------ENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 164 ~~~-------------~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
++| .+.+|++.||.|+++|||||+||++..++|++++
T Consensus 326 kn~~~~~~~~i~~i~t~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~ 375 (428)
T KOG1435|consen 326 KNPGDPKLKNIKTIYTSTGSKLLVSGWWGVARHPNYLGDLIMALAWSLPC 375 (428)
T ss_pred cCCCCCccccccceEeccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhc
Confidence 974 2356899999999999999999999999999986
No 6
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=99.28 E-value=8.9e-12 Score=105.52 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccccccchHHHHHHHhhhhccC
Q 028939 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 136 ~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
+...+|..+|+.|++++..+|.-+.+-||+.+++.|+.+.||+.|+.+||||||+++|+|+++.+
T Consensus 147 ~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ 211 (257)
T KOG1638|consen 147 IRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALAS 211 (257)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999888888999999999999999999999999999865
No 7
>PLN02392 probable steroid reductase DET2
Probab=99.08 E-value=1.6e-10 Score=99.79 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccccccchHHHHHHHhhhhccC
Q 028939 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 136 ~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
+..++|+++++.|..++..+|.++.+.|+++ ++.++++.|+++|+.+||||||+++|+++++.|
T Consensus 150 ~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t 213 (260)
T PLN02392 150 WRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMT 213 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999864 456899999999999999999999999998754
No 8
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=99.00 E-value=6.1e-10 Score=88.76 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccccccchHHHHHHHhhhhccC
Q 028939 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 135 ~~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
....++|++++++|...+.-+|.++.+-|++.+++.++++.|+++|+.+||||+|+++|+++++.+
T Consensus 39 ~~~~~~g~~lf~~g~~~n~~~h~~L~~lr~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~ 104 (150)
T PF02544_consen 39 SPRFIIGLALFLIGSIGNFYSHLILANLRKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLT 104 (150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHH
Confidence 356789999999999999999999999988776777899999999999999999999999998754
No 9
>PLN02560 enoyl-CoA reductase
Probab=98.80 E-value=1.6e-08 Score=89.59 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCccccccccccccccchHHHHHHHhhhhccC
Q 028939 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNS-PENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 136 ~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~-~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
...++|++++++|...+..+|.++.+.|++ .+++.++...|+++++-+||||+|++.|+++++.|
T Consensus 192 ~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t 257 (308)
T PLN02560 192 TQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIAT 257 (308)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999986 55566799999999999999999999999999876
No 10
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=98.72 E-value=2.3e-08 Score=88.57 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCccccccccccccccchHHHHHHHhhhhccC
Q 028939 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP--ENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 135 ~~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~--~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
++..++|+++|++|...+..+|..+.+.|+++ +++.++++.|+++++-+||||+|+++|+++++.+
T Consensus 208 ~~~q~iGl~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t 275 (323)
T PLN03164 208 GWFQWIGAAIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIAS 275 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999543 3356799999999999999999999999998865
No 11
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=98.59 E-value=1e-07 Score=70.65 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---C--CCCCccccccccccccccchHHHHHHHhhhhccC
Q 028939 137 VDVIGWIMWSVGVSIEAIADQQKLSFKNS---P--ENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 137 ~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~---~--~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
..++|..+.++|+.+...+=.+....+.. + ++++++.++|.+||+|||=|+|.++..++.++.+
T Consensus 2 ~~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~ 70 (106)
T PF04191_consen 2 RFVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALML 70 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHh
Confidence 35789999999999998888887776542 1 3456799999999999999999999999988754
No 12
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=98.53 E-value=9.2e-08 Score=70.73 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCCCCccccccccccccccchHHHHHHHhh
Q 028939 143 IMWSVGVSIEAIADQQKLSFKNS---PENRGKWCNVGFWKYSRHPNYFGEVGPSLL 195 (201)
Q Consensus 143 ~l~~~G~~~E~~AD~Ql~~Fr~~---~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~ 195 (201)
+++++|..+...|-.++.++=.. ..++++++|+|.|||+|||||+|-++..++
T Consensus 3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~ 58 (94)
T PF04140_consen 3 GLFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELG 58 (94)
T ss_dssp --HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHH
Confidence 45788888889988888665432 134567999999999999999996554443
No 13
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.1e-06 Score=70.77 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCccccccccccccccchHHHHHHHhhhhc
Q 028939 135 QAVDVIGWIMWSVGVSIEAIADQQKLSFKN---SPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNV 198 (201)
Q Consensus 135 ~~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~---~~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l 198 (201)
.....+|+.+..+|..+...+..|..+... ++++++++.++|.|+++|||=|+|.++..+++++
T Consensus 67 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~ 133 (187)
T COG2020 67 SWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGL 133 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHH
Confidence 346678999999999999999999888632 2244667999999999999999999999999874
No 14
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.96 E-value=1.3e-05 Score=64.70 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCccccccccccccccchHH-HHHHHhhhh
Q 028939 133 SVQAVDVIGWIMWSVGVSIEAIADQQKLSFKNSP---ENRGKWCNVGFWKYSRHPNYFG-EVGPSLLLN 197 (201)
Q Consensus 133 ~l~~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~---~~~gk~~~~GLw~ysRHPNYfG-E~l~~l~~~ 197 (201)
..++..++|++++++...+-..+-.++.++=..+ -.+++..++|++|+.||||||= -+.+-.+.+
T Consensus 66 ~f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~ 134 (172)
T COG1755 66 FFNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLP 134 (172)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHH
Confidence 3566778899999999999999999998876533 2357899999999999999998 333333333
No 15
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=9.7e-05 Score=61.20 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=27.9
Q ss_pred CCCCCccccccccccccccchHHHHHHHhhhhc
Q 028939 166 PENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNV 198 (201)
Q Consensus 166 ~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l 198 (201)
+..+.++.++|.++|+|||-|+|-.+.+++-++
T Consensus 116 k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~ 148 (201)
T KOG2628|consen 116 KVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQT 148 (201)
T ss_pred cccCceeEeccchhheeCchHHHHHHHHHHHHH
Confidence 345667999999999999999999988877553
No 16
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=96.78 E-value=0.028 Score=49.36 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CCCccccccccccccccchHHHHHHHhhhh
Q 028939 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPE--NRGKWCNVGFWKYSRHPNYFGEVGPSLLLN 197 (201)
Q Consensus 136 ~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~~--~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~ 197 (201)
+..++|.+++..|-.=+.-+..|+.+-|++|. .+..+++.|+++++..|||++|++...+.+
T Consensus 192 i~q~~g~~iF~i~s~~Qy~~h~iL~nlrk~~~~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia 255 (304)
T KOG1640|consen 192 ILQWLGLGIFAIGSIHQYASHEILGNLRKYPRQAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIA 255 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhheecCCCCEeeecCChHHHHHHHHHHHHH
Confidence 37789999999999999999999999988764 234589999999999999999999988754
No 17
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.26 E-value=0.018 Score=49.82 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccc-ccc-ccccccccchHHHHHHHhhhhccC
Q 028939 137 VDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWC-NVG-FWKYSRHPNYFGEVGPSLLLNVTT 200 (201)
Q Consensus 137 ~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~~~~gk~~-~~G-Lw~ysRHPNYfGE~l~~l~~~l~~ 200 (201)
...+|++.++++-+.+.-...-+...|....+++++. ..| |+.++.+|||+-|+..|+++++.|
T Consensus 187 ~~~~~l~~fv~~el~NF~~HI~LR~lrp~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~F~i~t 252 (297)
T KOG1639|consen 187 QVKLGLGGFVLCELGNFSCHILLRNLRPAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIGFAIMT 252 (297)
T ss_pred hhhhhhHHHhhhhhcceeeEeehhhccCCcCccceeecCCccEEEEEecCCcceehHHHHHHHHHH
Confidence 4456655555533222222222222222222233332 445 999999999999999999998865
No 18
>COG3162 Predicted membrane protein [Function unknown]
Probab=61.39 E-value=67 Score=24.10 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=34.4
Q ss_pred chhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCCC-CcHHHHHHHHHHHHHHHHHHH
Q 028939 91 DRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNA-----SDRDPS-VQAVDVIGWIMWSVGVSIEAI 154 (201)
Q Consensus 91 D~Ry~~~r~~~~~~~~~~~~Q~~~~~~~slP~~~~~~-----~~~~~~-l~~~~~ig~~l~~~G~~~E~~ 154 (201)
.+||.|++++-.+|... +.-..+++.+++|+..+.. .|-.+. .++-..+|+..++.++++-.+
T Consensus 12 ~p~f~eLv~kr~~Fa~~-ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~I 80 (102)
T COG3162 12 NPRFRELVRKRRRFAVP-LTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGI 80 (102)
T ss_pred CHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHH
Confidence 47899999886654321 1222234445555544332 121222 455556777788777776654
No 19
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=46.72 E-value=68 Score=24.71 Aligned_cols=62 Identities=6% Similarity=0.074 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcEeecccchHHHHHHHHHH---HHhCCchhHHHHHHHHHH
Q 028939 10 LALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTL---ILKGSWHFRQVVLTFLAV 71 (201)
Q Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~---~~~~~~~~r~~l~~~l~~ 71 (201)
.....+++.+...+.|..+...-.-+..=..|+..++....... .+++..+.++++=.++++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi 114 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIM 114 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 55566777777888888777666666666888888766554443 467888888875444443
No 20
>COG2510 Predicted membrane protein [Function unknown]
Probab=44.05 E-value=1.6e+02 Score=23.32 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhccCcEeecccchHHHHHHHHHH-HHhCCchhHHHHHHHHHH
Q 028939 16 VTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTL-ILKGSWHFRQVVLTFLAV 71 (201)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~-~~~~~~~~r~~l~~~l~~ 71 (201)
++-++.++.|..+...++.|.|-+.=..+++++++++. .+++..+..+++=.++++
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~ 131 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIV 131 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45667777787788888888888887888888777764 346666666665544443
No 21
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=41.86 E-value=38 Score=27.98 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccccccchHHHHH
Q 028939 136 AVDVIGWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVG 191 (201)
Q Consensus 136 ~~~~ig~~l~~~G~~~E~~AD~Ql~~Fr~~~~~~gk~~~~GLw~ysRHPNYfGE~l 191 (201)
+.-.+...++..++++-..|-.+...|- +.+++|||-+.|-.+
T Consensus 68 ~~~~l~~~lm~~a~il~~~a~~~~~~~~-------------i~r~~RHP~l~g~~l 110 (191)
T PF07298_consen 68 WLRHLANLLMLLAFILLVAALFPPNPFS-------------IYRITRHPMLLGVLL 110 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCcchH-------------HHHHhcCchHHHHHH
Confidence 3445666777777776665443222111 999999999999765
No 22
>PF15113 TMEM117: TMEM117 protein family
Probab=37.78 E-value=59 Score=29.89 Aligned_cols=62 Identities=26% Similarity=0.496 Sum_probs=41.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCcCcchhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 028939 57 GSWHFRQVVLTFLAVVWGLRLALFLLMRILNWGEDRRFDEMRSNLGKLAIFWIFQAVWVWTVS 119 (201)
Q Consensus 57 ~~~~~r~~l~~~l~~iW~~RL~~~l~~R~~~~~eD~Ry~~~r~~~~~~~~~~~~Q~~~~~~~s 119 (201)
++...-+.++-++.+++|+|.+.|++.|.+ -+.+-|-+.+|++-|.....|+.--+..++.+
T Consensus 61 ~gw~~LKv~lwllai~~GL~~GKfl~H~~L-fg~~~rlkmf~ed~Gswm~mF~stil~lF~fs 122 (415)
T PF15113_consen 61 GGWRALKVLLWLLAIFTGLIAGKFLFHQRL-FGQLLRLKMFREDHGSWMTMFLSTILFLFIFS 122 (415)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHhhhhhcccCCceehHHHHHHHHHHHHH
Confidence 344556677777899999999999997743 24567778888887765544443333333333
No 23
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=37.45 E-value=70 Score=21.75 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=34.4
Q ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHhccCcEeecccchHHHHHHHHHHHHhC
Q 028939 3 TVIDSHFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTLILKG 57 (201)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~~~~~ 57 (201)
+++..|.|..++++.-+++++.+.+|...-+-++= +|.--++.++..++.++
T Consensus 6 ~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~Grih---GSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 6 KVLTKNGLITAFAVVGIIMWVSYWLSKKLTRGRIH---GSAIAIVLGLVLAYIGG 57 (60)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHHcc
Confidence 45677889999999999999999999766555543 33333333444444443
No 24
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=33.31 E-value=11 Score=32.75 Aligned_cols=11 Identities=36% Similarity=1.087 Sum_probs=8.8
Q ss_pred ccccccchHHH
Q 028939 179 KYSRHPNYFGE 189 (201)
Q Consensus 179 ~ysRHPNYfGE 189 (201)
+++|||||+.+
T Consensus 191 RwcR~p~y~fd 201 (281)
T COG4757 191 RWCRHPRYYFD 201 (281)
T ss_pred HHhcCcccccc
Confidence 58999998653
No 25
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=30.64 E-value=48 Score=30.85 Aligned_cols=14 Identities=21% Similarity=0.124 Sum_probs=9.4
Q ss_pred chHHHHHHHhhhhc
Q 028939 185 NYFGEVGPSLLLNV 198 (201)
Q Consensus 185 NYfGE~l~~l~~~l 198 (201)
|+||+++.=++=++
T Consensus 303 NlfGDILSDlaa~l 316 (416)
T TIGR00183 303 NLNGDYISDALAAQ 316 (416)
T ss_pred CcccchhhHHHHHh
Confidence 88888877554443
No 26
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=27.99 E-value=58 Score=22.39 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028939 137 VDVIGWIMWSVGVSIEAIADQQK 159 (201)
Q Consensus 137 ~~~ig~~l~~~G~~~E~~AD~Ql 159 (201)
...+|+.+.+.|++.|.+++ ||
T Consensus 39 ~i~i~I~l~l~G~isE~i~~-~K 60 (63)
T PF06341_consen 39 LISIGITLFLAGLISEFISK-QK 60 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhh-cc
Confidence 34578889999999999987 54
No 27
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=27.96 E-value=2.3e+02 Score=20.29 Aligned_cols=61 Identities=15% Similarity=0.005 Sum_probs=29.2
Q ss_pred cchhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh-----CCCC-CCCcHHHHHHHHHHHHHHHH
Q 028939 90 EDRRFDEMRSNLGKLAIFWIFQAVWVWTVSLPVTVVNA-----SDRD-PSVQAVDVIGWIMWSVGVSI 151 (201)
Q Consensus 90 eD~Ry~~~r~~~~~~~~~~~~Q~~~~~~~slP~~~~~~-----~~~~-~~l~~~~~ig~~l~~~G~~~ 151 (201)
+|++|++++++-.++.... .-..++.++..|+....+ .+-. ..++.-...|++++++++.+
T Consensus 3 ~~p~f~~L~r~r~r~~~~l-~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l 69 (91)
T PF04341_consen 3 RSPEFQELVRRRRRLAWPL-SAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVL 69 (91)
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHH
Confidence 5789999987655432221 111122223334333221 1111 13666666777666555544
No 28
>cd02552 PseudoU_synth_TruD_like PseudoU_synth_TruD_like: Pseudouridine synthase, TruD family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruD and Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD and S. cerevisiae Pus7 make psi13 in cytoplasmic tRNAs. In addition S. cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA) and psi35 in pre-tRNATyr. Psi35 in U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35.
Probab=26.15 E-value=23 Score=30.21 Aligned_cols=8 Identities=63% Similarity=1.182 Sum_probs=7.1
Q ss_pred ccchHHHH
Q 028939 183 HPNYFGEV 190 (201)
Q Consensus 183 HPNYfGE~ 190 (201)
-|||||++
T Consensus 147 fpNYFG~Q 154 (232)
T cd02552 147 FPNYFGLQ 154 (232)
T ss_pred cccccchh
Confidence 79999986
No 29
>PF09124 Endonuc-dimeris: T4 recombination endonuclease VII, dimerisation; InterPro: IPR015208 This entry represents a dimerisation domain predominantly found in Bacteriophage T4 recombination endonuclease VII. It adopts a helical secondary structure, with three alpha helices oriented parallel to each other. As well as mediating dimerisation of the protein, this domain is also involved in binding to the DNA major groove []. ; PDB: 1EN7_B 1E7L_B 2QNF_A 2QNC_A 1E7D_A.
Probab=25.83 E-value=43 Score=22.32 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=9.5
Q ss_pred ccchHHHHHHHhh
Q 028939 183 HPNYFGEVGPSLL 195 (201)
Q Consensus 183 HPNYfGE~l~~l~ 195 (201)
||||-+|..-+.+
T Consensus 2 HP~fv~D~~K~FS 14 (54)
T PF09124_consen 2 HPQFVPDKVKWFS 14 (54)
T ss_dssp -THHHHHHHHHHH
T ss_pred CccchhHHHHHHH
Confidence 9999999876653
No 30
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=25.62 E-value=88 Score=28.05 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCcEeecccchHHHHH
Q 028939 8 HFLALTAIVTVGYQLLFFVITALFKFDKVTDFAGSTNFIII 48 (201)
Q Consensus 8 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~ 48 (201)
+++.-++.+-+.+-.-+++=..+.+.+++-...|-++++=-
T Consensus 43 QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf 83 (367)
T KOG1582|consen 43 QFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQF 83 (367)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHH
Confidence 34445555555555555665678888888888898876543
No 31
>PRK08601 NADH dehydrogenase subunit 5; Validated
Probab=24.24 E-value=6.4e+02 Score=24.16 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=15.3
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHH
Q 028939 56 KGSWHFRQVVLTFLAVVWGLRLALF 80 (201)
Q Consensus 56 ~~~~~~r~~l~~~l~~iW~~RL~~~ 80 (201)
..+.+.-+++ ++++..|++=.+.+
T Consensus 374 ~~~~~~~~~~-s~~~l~~~~~~~~~ 397 (509)
T PRK08601 374 SSPGEGYQLL-SALILGWSLYVSWN 397 (509)
T ss_pred cCCCchHHHH-HHHHHHHHHHHHHH
Confidence 3444455544 88999998766653
No 32
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=23.05 E-value=1.7e+02 Score=25.72 Aligned_cols=53 Identities=21% Similarity=0.058 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCccccccccccccccchHHHHHHHhhhh
Q 028939 138 DVIGWIMWSVGVSIEAIADQ-QKLSFKNSPENRGKWCNVGFWKYSRHPNYFGEVGPSLLLN 197 (201)
Q Consensus 138 ~~ig~~l~~~G~~~E~~AD~-Ql~~Fr~~~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~ 197 (201)
.++|+.+.+.|-++...++. ||...++.++++-+ -.++. ..|+-+-.+|.|+.
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~-~~~~~------~~~l~~~~W~~G~~ 58 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLR-AGSGG------RSYLRRPLWWIGLL 58 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-ccchh------hHHHhhHHHHHHHH
Confidence 35788888888777766665 88888876541111 11222 24666666666654
No 33
>PHA00728 hypothetical protein
Probab=21.32 E-value=21 Score=27.77 Aligned_cols=13 Identities=46% Similarity=1.132 Sum_probs=11.1
Q ss_pred cccccccchHHHH
Q 028939 178 WKYSRHPNYFGEV 190 (201)
Q Consensus 178 w~ysRHPNYfGE~ 190 (201)
+.+.|-|-||||=
T Consensus 78 fEfarLP~YFgEe 90 (151)
T PHA00728 78 FEFARLPAYFGEE 90 (151)
T ss_pred HHHhhchhhhCCc
Confidence 6788999999983
No 34
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=21.23 E-value=60 Score=30.81 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCC-CCCCCccccccccccccccchHHHHHHHhhhhccCC
Q 028939 153 AIADQQKLSFKNS-PENRGKWCNVGFWKYSRHPNYFGEVGPSLLLNVTTS 201 (201)
Q Consensus 153 ~~AD~Ql~~Fr~~-~~~~gk~~~~GLw~ysRHPNYfGE~l~~l~~~l~~~ 201 (201)
.-.|.|...|... ...+.|.-..|||+ .||| |+.+.++.|
T Consensus 330 ~~~~v~y~~fldrv~~ae~klrskgLWe-vphp--------WlnL~vpks 370 (505)
T KOG1231|consen 330 VEQDVQYHDFLDRVHFAEDKLRSKGLWE-VPHP--------WLNLAVPKS 370 (505)
T ss_pred hhhhhHHHHhhhHhhhcccchhhccccc-CCCc--------hheeecccc
Confidence 4457787777641 12245677889999 5999 777777764
No 35
>cd02575 PseudoU_synth_EcTruD PseudoU_synth_EcTruD: Pseudouridine synthase, TruD family. This group consists of bacterial pseudouridine synthases similar to Escherichia coli TruD. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD makes the highly phylogenetically conserved psi13 in tRNAs.
Probab=21.11 E-value=24 Score=30.59 Aligned_cols=8 Identities=63% Similarity=1.198 Sum_probs=7.0
Q ss_pred ccchHHHH
Q 028939 183 HPNYFGEV 190 (201)
Q Consensus 183 HPNYfGE~ 190 (201)
-|||||++
T Consensus 140 fpNYFG~Q 147 (253)
T cd02575 140 VPNYFGPQ 147 (253)
T ss_pred ccCCCcCC
Confidence 79999975
No 36
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=20.80 E-value=69 Score=23.36 Aligned_cols=9 Identities=33% Similarity=0.076 Sum_probs=3.5
Q ss_pred cCcEeeccc
Q 028939 33 FDKVTDFAG 41 (201)
Q Consensus 33 ~~~~~D~~w 41 (201)
.|++-|.+|
T Consensus 66 rE~VaDRYw 74 (89)
T PF10762_consen 66 REKVADRYW 74 (89)
T ss_pred cchhhhhHH
Confidence 334444433
No 37
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=20.09 E-value=3.7e+02 Score=19.84 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhccCcEeecccchHHHHHHHHHH-HHhCCchhHHHHH
Q 028939 18 VGYQLLFFVITALFKFDKVTDFAGSTNFIIIALLTL-ILKGSWHFRQVVL 66 (201)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~D~~w~~~~~~~~~~~~-~~~~~~~~r~~l~ 66 (201)
++.....+..+...-+-+..=..|+.+++.....+. .+++..+.++++=
T Consensus 47 ~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~G 96 (111)
T PRK15051 47 LGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCG 96 (111)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 344444444444333445555667777766666553 3455666666543
Done!