Query 028939
Match_columns 201
No_of_seqs 171 out of 1002
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 07:35:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rgoa2 g.66.1.1 (A:187-220) B 48.8 2.2 0.00016 23.4 0.4 9 181-189 1-9 (34)
2 d1e7la1 a.140.4.1 (A:104-157) 41.7 5.1 0.00037 24.1 1.4 12 183-194 2-13 (54)
3 d1szwa_ d.265.1.4 (A:) tRNA ps 13.0 13 0.00095 29.7 -1.2 8 183-190 156-163 (341)
4 d1iakb2 d.19.1.1 (B:5-92) Clas 8.6 24 0.0017 23.1 -0.9 8 178-186 70-77 (87)
5 d3ctda1 a.80.1.2 (A:258-420) U 8.1 76 0.0056 22.7 1.8 19 80-98 23-41 (163)
6 d1ppjw_ f.23.14.1 (W:) Subunit 7.7 98 0.0071 18.6 1.9 37 141-183 21-57 (62)
7 d1pvda1 c.31.1.3 (A:182-360) P 7.1 37 0.0027 24.0 -0.5 9 181-189 73-81 (179)
8 d1x3zb1 a.189.1.1 (B:253-309) 6.5 83 0.0061 18.2 1.0 10 92-101 33-42 (57)
9 d1q60a_ d.288.1.1 (A:) General 5.9 52 0.0038 21.8 -0.2 22 169-190 41-64 (99)
10 d3cx5i1 f.23.14.1 (I:4-58) Sub 5.8 1.1E+02 0.0082 17.9 1.4 36 142-183 16-51 (55)
No 1
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.76 E-value=2.2 Score=23.42 Aligned_cols=9 Identities=56% Similarity=1.021 Sum_probs=6.6
Q ss_pred ccccchHHH
Q 028939 181 SRHPNYFGE 189 (201)
Q Consensus 181 sRHPNYfGE 189 (201)
||||+|=-+
T Consensus 1 ~rhpkyKT~ 9 (34)
T d1rgoa2 1 TRHPKYKTE 9 (34)
T ss_dssp CCCTTTTCS
T ss_pred CCCCCccch
Confidence 699998433
No 2
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=41.72 E-value=5.1 Score=24.09 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=9.8
Q ss_pred ccchHHHHHHHh
Q 028939 183 HPNYFGEVGPSL 194 (201)
Q Consensus 183 HPNYfGE~l~~l 194 (201)
||||.++..=+.
T Consensus 2 Hp~~~~D~~K~F 13 (54)
T d1e7la1 2 HPNFVGDKSKEF 13 (54)
T ss_dssp CTHHHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 999999986554
No 3
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD {Escherichia coli [TaxId: 562]}
Probab=12.99 E-value=13 Score=29.74 Aligned_cols=8 Identities=63% Similarity=1.219 Sum_probs=6.5
Q ss_pred ccchHHHH
Q 028939 183 HPNYFGEV 190 (201)
Q Consensus 183 HPNYfGE~ 190 (201)
-|||||++
T Consensus 156 fpNYfG~Q 163 (341)
T d1szwa_ 156 VPNYFGAQ 163 (341)
T ss_dssp EECCCCGG
T ss_pred Cccccccc
Confidence 58999875
No 4
>d1iakb2 d.19.1.1 (B:5-92) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
Probab=8.63 E-value=24 Score=23.07 Aligned_cols=8 Identities=50% Similarity=0.675 Sum_probs=5.3
Q ss_pred cccccccch
Q 028939 178 WKYSRHPNY 186 (201)
Q Consensus 178 w~ysRHPNY 186 (201)
-+|+|| ||
T Consensus 70 dt~CRh-NY 77 (87)
T d1iakb2 70 DTVCRH-NY 77 (87)
T ss_dssp HHTHHH-HH
T ss_pred cccccC-Cc
Confidence 357777 76
No 5
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=8.14 E-value=76 Score=22.68 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=12.1
Q ss_pred HHHHhhcCcCcchhHHHHH
Q 028939 80 FLLMRILNWGEDRRFDEMR 98 (201)
Q Consensus 80 ~l~~R~~~~~eD~Ry~~~r 98 (201)
|++.|.+..|||++|-.-|
T Consensus 23 y~larml~~Gedp~~i~RR 41 (163)
T d3ctda1 23 YWLANMVEAGEDPNFIFRR 41 (163)
T ss_dssp HHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHH
Confidence 3344555679999886544
No 6
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.72 E-value=98 Score=18.60 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccccc
Q 028939 141 GWIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRH 183 (201)
Q Consensus 141 g~~l~~~G~~~E~~AD~Ql~~Fr~~~~~~gk~~~~GLw~ysRH 183 (201)
-..++..++.+|..-|.--...=.. .|+|| +|+=.||
T Consensus 21 ~~tI~~gAf~fE~~fD~~~d~iwe~-~NkGK-----lWKDIk~ 57 (62)
T d1ppjw_ 21 ALTIVVGALFFERAFDQGADAIYEH-INEGK-----LWKHIKH 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HTTTT-----SHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccccc-----chHHHHH
Confidence 3456677788888877766554332 36676 5666666
No 7
>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.14 E-value=37 Score=23.97 Aligned_cols=9 Identities=44% Similarity=0.848 Sum_probs=7.1
Q ss_pred ccccchHHH
Q 028939 181 SRHPNYFGE 189 (201)
Q Consensus 181 sRHPNYfGE 189 (201)
.+||||.|.
T Consensus 73 e~hp~~~G~ 81 (179)
T d1pvda1 73 EQHPRYGGV 81 (179)
T ss_dssp TTSTTEEEE
T ss_pred ccccccccc
Confidence 569999873
No 8
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.46 E-value=83 Score=18.24 Aligned_cols=10 Identities=20% Similarity=0.730 Sum_probs=8.3
Q ss_pred hhHHHHHHhh
Q 028939 92 RRFDEMRSNL 101 (201)
Q Consensus 92 ~Ry~~~r~~~ 101 (201)
.||+++|++.
T Consensus 33 ~ryp~lre~i 42 (57)
T d1x3zb1 33 ARYPQLREHI 42 (57)
T ss_dssp TTCHHHHHHH
T ss_pred HhhHHHHHHH
Confidence 6999999864
No 9
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.91 E-value=52 Score=21.84 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=13.4
Q ss_pred CCccccccccc--cccccchHHHH
Q 028939 169 RGKWCNVGFWK--YSRHPNYFGEV 190 (201)
Q Consensus 169 ~gk~~~~GLw~--ysRHPNYfGE~ 190 (201)
.+.+...||=. =-||||++|--
T Consensus 41 P~~v~V~GLPegI~Fr~P~~ygi~ 64 (99)
T d1q60a_ 41 PEDFYVEGLPEGVPFRRPSTFGIP 64 (99)
T ss_dssp TTTEEEESCCTTCCSCCTTTSCHH
T ss_pred CCeEEEeeCCCCCcCCCCCccCHH
Confidence 34566666544 24899987743
No 10
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.75 E-value=1.1e+02 Score=17.85 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccccc
Q 028939 142 WIMWSVGVSIEAIADQQKLSFKNSPENRGKWCNVGFWKYSRH 183 (201)
Q Consensus 142 ~~l~~~G~~~E~~AD~Ql~~Fr~~~~~~gk~~~~GLw~ysRH 183 (201)
..++..++.+|..=|.--...=.. .|+|| +|+=.||
T Consensus 16 ~tI~~gAf~fe~~fD~~~d~~we~-~NkGK-----lWkDIk~ 51 (55)
T d3cx5i1 16 GTIFAGAFVFQTVFDTAITSWYEN-HNKGK-----LWKDVKA 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTTT-----SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccCcc-----cHHHHHH
Done!