BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028940
(201 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FUT3|AB23B_ARATH ABC transporter B family member 23, mitochondrial OS=Arabidopsis
thaliana GN=ABCB23 PE=2 SV=1
Length = 678
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 136 YFLNEKTKSLARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFF 192
Y LN +T +L R II G+ A IL ++V ++PT+L + ++T ++AY F
Sbjct: 204 YHLNRETGALNR--IIDRGSRAINTILSAMVFNVVPTIL-----EISMVTGILAYNF 253
>sp|Q09FX5|ATPF_NANDO ATP synthase subunit b, chloroplastic OS=Nandina domestica GN=atpF
PE=3 SV=1
Length = 184
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 35/71 (49%)
Query: 48 IEAAFEKLLMTSFRRRKKEKINLKSRLKKQVEESPPWFKNLLNFVELPPKDVIFRRLFLF 107
+E E ++ ++ ++EK+NL++ + K +E + + F + + + +R+F
Sbjct: 88 VEKEAEDYIVNGYQEIEREKLNLRNSIGKNLERLENYKNETIQFEQQRAINQVRQRVFQQ 147
Query: 108 AFMGGWSIMNS 118
A G +NS
Sbjct: 148 ALQGALGTLNS 158
>sp|Q291J4|CALYP_DROPS Ubiquitin carboxyl-terminal hydrolase calypso OS=Drosophila
pseudoobscura pseudoobscura GN=calypso PE=3 SV=1
Length = 475
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 116 MNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWI 161
MN A GGP A + AA F N S A+ + + LA GW+
Sbjct: 1 MNVAAGGPGTASASTTAANSIFNNSLLASATGATTMPMAQLADGWL 46
>sp|B4GAM2|CALYP_DROPE Ubiquitin carboxyl-terminal hydrolase calypso OS=Drosophila
persimilis GN=calypso PE=3 SV=1
Length = 475
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 116 MNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWI 161
MN A GGP A + AA F N S A+ + + LA GW+
Sbjct: 1 MNVAAGGPGTASASTTAANSIFNNSLLASATGATTMPMAQLADGWL 46
>sp|A5D1V4|KCY_PELTS Cytidylate kinase OS=Pelotomaculum thermopropionicum (strain DSM
13744 / JCM 10971 / SI) GN=cmk PE=3 SV=1
Length = 226
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 106 LFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSV 165
L F+ G + PA AVSL A + + E+ L RA G G + G +G+V
Sbjct: 78 LRVFLDGEDVTEEIRS-PAVSKAVSLVARVPAVRERLVELQRAMASGGGVVMEGRDIGTV 136
Query: 166 VVP 168
V+P
Sbjct: 137 VLP 139
>sp|Q56P07|ATPF_LACSA ATP synthase subunit b, chloroplastic OS=Lactuca sativa GN=atpF
PE=3 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 44 SEESIEAAFEKLLMTSFRRRK-----------------KEKINLKSRLKKQVEESPPWFK 86
SEE E A E+L R RK +EK+NL K +E+ +
Sbjct: 67 SEELREGAIEQLEKARARLRKVEIEADQFRVNGYSEIEREKLNLIDSTYKTLEQLENYKN 126
Query: 87 NLLNFVELPPKDVIFRRLFLFAFMGGWSIMNS 118
+NF + + + +R+F A G +NS
Sbjct: 127 ETINFEQQKASNQVRQRVFQQALQGALGTLNS 158
>sp|Q1KXW6|ATPF_HELAN ATP synthase subunit b, chloroplastic OS=Helianthus annuus GN=atpF
PE=3 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 44 SEESIEAAFEKLLMTSFRRRK-----------------KEKINLKSRLKKQVEESPPWFK 86
SEE E A E+L R RK +EK+NL K +E+ +
Sbjct: 67 SEELREGAIEQLEKARARLRKIEIEADEFRVNGYSEIEREKLNLIDSTYKTLEQLENYKN 126
Query: 87 NLLNFVELPPKDVIFRRLFLFAFMGGWSIMNS 118
+NF + + + +R+F A G +NS
Sbjct: 127 ETINFEQQKASNQVRQRVFQQALQGALGTLNS 158
>sp|B2LMI6|ATPF_GUIAB ATP synthase subunit b, chloroplastic OS=Guizotia abyssinica
GN=atpF PE=3 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 44 SEESIEAAFEKLLMTSFRRRK-----------------KEKINLKSRLKKQVEESPPWFK 86
SEE E A E+L R RK +EK+NL K +E+ +
Sbjct: 67 SEELREGAIEQLEKARARLRKVEIEADEFRVNGYSEIEREKLNLIDSTYKTLEQLENYKN 126
Query: 87 NLLNFVELPPKDVIFRRLFLFAFMGGWSIMNS 118
+NF + + + +R+F A G +NS
Sbjct: 127 ETINFEQQKASNQVRQRVFQQALQGALGTLNS 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,645,235
Number of Sequences: 539616
Number of extensions: 2772007
Number of successful extensions: 10826
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10820
Number of HSP's gapped (non-prelim): 13
length of query: 201
length of database: 191,569,459
effective HSP length: 112
effective length of query: 89
effective length of database: 131,132,467
effective search space: 11670789563
effective search space used: 11670789563
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)